. . . . . "* MS:$sequence(7,0,9999999)$"^^ . "* PEFF:$sequence(7,0,9999999)$"^^ . "OBO-Edit 2.3.1"^^ . "01:04:2022 12:51"^^ . "MS"^^ . "1.2"^^ . "Joshua Klein"^^ . "For any queries contact psidev-ms-vocab@lists.sourceforge.net"^^ . "This work is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license."^^ . "To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA."^^ . "URL: https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo"^^ . "When appropriate the definition and synonyms of a term are reported exactly as in the chapter 12 of IUPAC orange book. See http://www.iupac.org/projects/2003/2003-056-2-500.html and http://mass-spec.lsu.edu/msterms/index.php/Main_Page"^^ . "coverage of namespace-id: MS:$sequence(7,4000000,4999999)$: Mass spectrometry quality control metrics"^^ . "coverage: Mass spectrometer output files and spectra interpretation"^^ . "creator: Andreas Bertsch informatik.uni-tuebingen.de>"^^ . "creator: Chris Bielow fu-berlin.de>"^^ . "creator: Eric Deutsch systemsbiology.org>"^^ . "creator: Fredrik Levander immun.lth.se>"^^ . "creator: Gerhard Mayer rub.de>"^^ . "creator: Joshua Klein bu.edu>"^^ . "creator: Julian Uszkoreit ruhr-uni-bochum.de>"^^ . "creator: Marius Kallhardt bdal.de>"^^ . "creator: Mathias Walzer ebi.ac.uk>"^^ . "creator: Matt Chambers vanderbilt.edu>"^^ . "creator: Nils Hoffmann < nils.hoffmann <-at-> cebitec.uni-bielefeld.de>"^^ . "creator: Pierre-Alain Binz chuv.ch>"^^ . "creator: Wout Bittremieux health.ucsd.edu>"^^ . "creator: Yasset Perez-Riverol ebi.ac.uk>"^^ . "namespace: MS"^^ . "namespace: PEFF"^^ . "publisher: HUPO Proteomics Standards Initiative Mass Spectrometry Standards Working Group and HUPO Proteomics Standards Initiative Proteomics Informatics Working Group"^^ . . "definition"^^ . . "term replaced by"^^ . . . "namespace-id-rule"^^ . . . . . "database_cross_reference"^^ . . "has_exact_synonym"^^ . . "has_narrow_synonym"^^ . . "has_obo_format_version"^^ . . "has_obo_namespace"^^ . . "has_related_synonym"^^ . . . "in_subset"^^ . . . . . . . . . "MS"^^ . "has_column"^^ . "has_column"^^ . . "MS"^^ . "has_domain"^^ . "has_domain"^^ . . "MS"^^ . "has_metric_category"^^ . "has_metric_category"^^ . . "MS"^^ . "has_optional_column"^^ . "has_optional_column"^^ . . "MS"^^ . "has_order"^^ . "has_order"^^ . . "MS"^^ . "has_regexp"^^ . "has regexp"^^ . . . "The term is encoded in the structure of the named file format rather than as an explicit parameter, and should not be used as one in that format."^^ . "MS"^^ . "has_structured_representation_in_format"^^ . "has structured representation in format"^^ . . "MS"^^ . "has_units"^^ . "has_units"^^ . . "MS"^^ . "has_value_concept"^^ . "has_value_concept"^^ . . "'Entity A' has value type 'Entity B', such as xsd:float."^^ . "MS"^^ . "has_value_type"^^ . "has value type"^^ . . . "MS"^^ . "part_of"^^ . "part_of"^^ . . "Proteomics Standards Initiative Mass Spectrometry Vocabularies."^^ . "MS"^^ . "MS:0000000"^^ . "Proteomics Standards Initiative Mass Spectrometry Vocabularies"^^ . _:genid1 . _:genid1 . _:genid1 . _:genid1 "Proteomics Standards Initiative Mass Spectrometry Vocabularies."^^ . _:genid1 "PSI:MS"^^ . . . _:genid2 . _:genid2 . _:genid2 . _:genid2 . "A reference number relevant to the sample under study."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000001"^^ . "sample number"^^ . _:genid3 . _:genid3 . _:genid3 . _:genid3 "A reference number relevant to the sample under study."^^ . _:genid3 "PSI:MS"^^ . _:genid4 . _:genid4 . _:genid4 . _:genid4 "value-type:xsd:string"^^ . _:genid4 "The allowed value-type for this CV term."^^ . . . _:genid5 . _:genid5 . _:genid5 . _:genid5 . "A reference string relevant to the sample under study."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000002"^^ . "sample name"^^ . _:genid6 . _:genid6 . _:genid6 . _:genid6 "A reference string relevant to the sample under study."^^ . _:genid6 "PSI:MS"^^ . _:genid7 . _:genid7 . _:genid7 . _:genid7 "value-type:xsd:string"^^ . _:genid7 "The allowed value-type for this CV term."^^ . . . "The chemical phase of a pure sample, or the state of a mixed sample."^^ . "MS"^^ . "MS:1000003"^^ . "sample state"^^ . _:genid8 . _:genid8 . _:genid8 . _:genid8 "The chemical phase of a pure sample, or the state of a mixed sample."^^ . _:genid8 "PSI:MS"^^ . . . _:genid9 . _:genid9 . _:genid9 . _:genid9 . _:genid10 . _:genid10 . _:genid10 . _:genid10 . "Total mass of sample used."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000004"^^ . "sample mass"^^ . _:genid11 . _:genid11 . _:genid11 . _:genid11 "Total mass of sample used."^^ . _:genid11 "PSI:MS"^^ . _:genid12 . _:genid12 . _:genid12 . _:genid12 "value-type:xsd:float"^^ . _:genid12 "The allowed value-type for this CV term."^^ . . . _:genid13 . _:genid13 . _:genid13 . _:genid13 . _:genid14 . _:genid14 . _:genid14 . _:genid14 . "Total volume of solution used."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000005"^^ . "sample volume"^^ . _:genid15 . _:genid15 . _:genid15 . _:genid15 "Total volume of solution used."^^ . _:genid15 "PSI:MS"^^ . _:genid16 . _:genid16 . _:genid16 . _:genid16 "value-type:xsd:float"^^ . _:genid16 "The allowed value-type for this CV term."^^ . . . _:genid17 . _:genid17 . _:genid17 . _:genid17 . _:genid18 . _:genid18 . _:genid18 . _:genid18 . "Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000006"^^ . "sample concentration"^^ . _:genid19 . _:genid19 . _:genid19 . _:genid19 "Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used."^^ . _:genid19 "PSI:MS"^^ . _:genid20 . _:genid20 . _:genid20 . _:genid20 "value-type:xsd:float"^^ . _:genid20 "The allowed value-type for this CV term."^^ . . _:genid21 . _:genid21 . _:genid21 . _:genid21 . "The nature of the sample inlet."^^ . "MS"^^ . "MS:1000007"^^ . "inlet type"^^ . _:genid22 . _:genid22 . _:genid22 . _:genid22 "The nature of the sample inlet."^^ . _:genid22 "PSI:MS"^^ . . _:genid23 . _:genid23 . _:genid23 . _:genid23 . "The method by which gas phase ions are generated from the sample."^^ . "MS"^^ . "MS:1000008"^^ . "ionization type"^^ . _:genid24 . _:genid24 . _:genid24 . _:genid24 "The method by which gas phase ions are generated from the sample."^^ . _:genid24 "PSI:MS"^^ . . "OBSOLETE Whether positive or negative ions are selected for analysis by the spectrometer."^^ . "MS"^^ . "MS:1000009"^^ . "This term was made obsolete because it was replaced by scan polarity (MS:1000465)."^^ . "ionization mode"^^ . "true"^^ . _:genid25 . _:genid25 . _:genid25 . _:genid25 "OBSOLETE Whether positive or negative ions are selected for analysis by the spectrometer."^^ . _:genid25 "PSI:MS"^^ . . "OBSOLETE The common name of the particular analyzer stage being described. Synonym of mass analyzer, should be obsoleted."^^ . "MS"^^ . "MS:1000010"^^ . "This former purgatory term was made obsolete."^^ . "analyzer type"^^ . "true"^^ . _:genid26 . _:genid26 . _:genid26 . _:genid26 "OBSOLETE The common name of the particular analyzer stage being described. Synonym of mass analyzer, should be obsoleted."^^ . _:genid26 "PSI:MS"^^ . . . _:genid27 . _:genid27 . _:genid27 . _:genid27 . "Smallest mass difference between two equal magnitude peaks so that the valley between them is a specified fraction of the peak height."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000011"^^ . "mass resolution"^^ . _:genid28 . _:genid28 . _:genid28 . _:genid28 "Smallest mass difference between two equal magnitude peaks so that the valley between them is a specified fraction of the peak height."^^ . _:genid28 "PSI:MS"^^ . _:genid29 . _:genid29 . _:genid29 . _:genid29 "value-type:xsd:string"^^ . _:genid29 "The allowed value-type for this CV term."^^ . . . "Which of the available standard measures is used to define whether two peaks are separate."^^ . "MS"^^ . "MS:1000012"^^ . "resolution measurement method"^^ . _:genid30 . _:genid30 . _:genid30 . _:genid30 "Which of the available standard measures is used to define whether two peaks are separate."^^ . _:genid30 "PSI:MS"^^ . . "OBSOLETE Specify the nature of resolution for the mass analyzer. Resolution is usually either constant with respect to m/z or proportional to m/z."^^ . "MS"^^ . "MS:1000013"^^ . "This former purgatory term was made obsolete."^^ . "resolution type"^^ . "true"^^ . _:genid31 . _:genid31 . _:genid31 . _:genid31 "OBSOLETE Specify the nature of resolution for the mass analyzer. Resolution is usually either constant with respect to m/z or proportional to m/z."^^ . _:genid31 "PSI:MS"^^ . . . _:genid32 . _:genid32 . _:genid32 . _:genid32 . _:genid33 . _:genid33 . _:genid33 . _:genid33 . _:genid34 . _:genid34 . _:genid34 . _:genid34 . "Accuracy is the degree of conformity of a measured mass to its actual value."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000014"^^ . "accuracy"^^ . _:genid35 . _:genid35 . _:genid35 . _:genid35 "Accuracy is the degree of conformity of a measured mass to its actual value."^^ . _:genid35 "PSI:MS"^^ . _:genid36 . _:genid36 . _:genid36 . _:genid36 "value-type:xsd:float"^^ . _:genid36 "The allowed value-type for this CV term."^^ . . . _:genid37 . _:genid37 . _:genid37 . _:genid37 . _:genid38 . _:genid38 . _:genid38 . _:genid38 . "Rate in Th/sec for scanning analyzers."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000015"^^ . "scan rate"^^ . _:genid39 . _:genid39 . _:genid39 . _:genid39 "Rate in Th/sec for scanning analyzers."^^ . _:genid39 "PSI:MS"^^ . _:genid40 . _:genid40 . _:genid40 . _:genid40 "value-type:xsd:float"^^ . _:genid40 "The allowed value-type for this CV term."^^ . . . . _:genid41 . _:genid41 . _:genid41 . _:genid41 . _:genid42 . _:genid42 . _:genid42 . _:genid42 . _:genid43 . _:genid43 . _:genid43 . _:genid43 . "The time that an analyzer started a scan, relative to the start of the MS run."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000016"^^ . "scan start time"^^ . _:genid44 . _:genid44 . _:genid44 . _:genid44 "The time that an analyzer started a scan, relative to the start of the MS run."^^ . _:genid44 "PSI:MS"^^ . _:genid45 . _:genid45 . _:genid45 . _:genid45 "value-type:xsd:float"^^ . _:genid45 "The allowed value-type for this CV term."^^ . . "OBSOLETE Describes the type of mass analysis being performed. Two primary modes are: typical acquisition over a range of masses (Mass Scan), and Selected Ion Detection. The primary difference is that Selected Ion Detection produces a single value for the signal at the selected mass rather than producing a mass spectrum."^^ . "MS"^^ . "MS:1000017"^^ . "OBSOLETE This former purgatory term was made obsolete."^^ . "Scan Function"^^ . "true"^^ . _:genid46 . _:genid46 . _:genid46 . _:genid46 "OBSOLETE Describes the type of mass analysis being performed. Two primary modes are: typical acquisition over a range of masses (Mass Scan), and Selected Ion Detection. The primary difference is that Selected Ion Detection produces a single value for the signal at the selected mass rather than producing a mass spectrum."^^ . _:genid46 "PSI:MS"^^ . . _:genid47 . _:genid47 . _:genid47 . _:genid47 . "Direction in terms of m/z of the scan for scanning analyzers (low to high, or high to low)."^^ . "MS"^^ . "MS:1000018"^^ . "scan direction"^^ . _:genid48 . _:genid48 . _:genid48 . _:genid48 "Direction in terms of m/z of the scan for scanning analyzers (low to high, or high to low)."^^ . _:genid48 "PSI:MS"^^ . . _:genid49 . _:genid49 . _:genid49 . _:genid49 . "Describes the function in control of the m/z scan (for scanning instruments). Commonly the scan function is linear, but in principle any function can be used."^^ . "MS"^^ . "MS:1000019"^^ . "scan law"^^ . _:genid50 . _:genid50 . _:genid50 . _:genid50 "Describes the function in control of the m/z scan (for scanning instruments). Commonly the scan function is linear, but in principle any function can be used."^^ . _:genid50 "PSI:MS"^^ . . "Describes the acquisition data type produced by a tandem mass spectrometry experiment."^^ . "MS"^^ . "Tandem Scanning Method"^^ . "MS:1000020"^^ . "OBSOLETE This former purgatory term was made obsolete."^^ . "scanning method"^^ . "true"^^ . _:genid51 . _:genid51 . _:genid51 . _:genid51 "Describes the acquisition data type produced by a tandem mass spectrometry experiment."^^ . _:genid51 "PSI:MS"^^ . . . "Status of the reflectron, turned on or off."^^ . "MS"^^ . "MS:1000021"^^ . "reflectron state"^^ . _:genid52 . _:genid52 . _:genid52 . _:genid52 "Status of the reflectron, turned on or off."^^ . _:genid52 "PSI:MS"^^ . . . _:genid53 . _:genid53 . _:genid53 . _:genid53 . _:genid54 . _:genid54 . _:genid54 . _:genid54 . "The length of the field free drift space in a time of flight mass spectrometer."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000022"^^ . "TOF Total Path Length"^^ . _:genid55 . _:genid55 . _:genid55 . _:genid55 "The length of the field free drift space in a time of flight mass spectrometer."^^ . _:genid55 "PSI:MS"^^ . _:genid56 . _:genid56 . _:genid56 . _:genid56 "value-type:xsd:float"^^ . _:genid56 "The allowed value-type for this CV term."^^ . . _:genid57 . _:genid57 . _:genid57 . _:genid57 . _:genid58 . _:genid58 . _:genid58 . _:genid58 . "OBSOLETE The total width (i.e. not half for plus-or-minus) of the gate applied around a selected precursor ion."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000023"^^ . "This former purgatory term was made obsolete."^^ . "isolation width"^^ . "true"^^ . _:genid59 . _:genid59 . _:genid59 . _:genid59 "OBSOLETE The total width (i.e. not half for plus-or-minus) of the gate applied around a selected precursor ion."^^ . _:genid59 "PSI:MS"^^ . _:genid60 . _:genid60 . _:genid60 . _:genid60 "value-type:xsd:float"^^ . _:genid60 "The allowed value-type for this CV term."^^ . . . _:genid61 . _:genid61 . _:genid61 . _:genid61 . "Final MS level achieved when performing PFF with the ion trap (e.g. MS E10)."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1000024"^^ . "final MS exponent"^^ . _:genid62 . _:genid62 . _:genid62 . _:genid62 "Final MS level achieved when performing PFF with the ion trap (e.g. MS E10)."^^ . _:genid62 "PSI:MS"^^ . _:genid63 . _:genid63 . _:genid63 . _:genid63 "value-type:xsd:int"^^ . _:genid63 "The allowed value-type for this CV term."^^ . . . _:genid64 . _:genid64 . _:genid64 . _:genid64 . _:genid65 . _:genid65 . _:genid65 . _:genid65 . "A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity."^^ . "value-type:xsd:float"^^ . "B"^^ . "MS"^^ . "Magnetic Field"^^ . "MS:1000025"^^ . "magnetic field strength"^^ . _:genid66 . _:genid66 . _:genid66 . _:genid66 "A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity."^^ . _:genid66 "PSI:MS"^^ . _:genid67 . _:genid67 . _:genid67 . _:genid67 "value-type:xsd:float"^^ . _:genid67 "The allowed value-type for this CV term."^^ . . _:genid68 . _:genid68 . _:genid68 . _:genid68 . "Type of detector used in the mass spectrometer."^^ . "MS"^^ . "MS:1000026"^^ . "detector type"^^ . _:genid69 . _:genid69 . _:genid69 . _:genid69 "Type of detector used in the mass spectrometer."^^ . _:genid69 "PSI:MS"^^ . . _:genid70 . _:genid70 . _:genid70 . _:genid70 . "Method by which detector signal is acquired by the data system."^^ . "MS"^^ . "MS:1000027"^^ . "detector acquisition mode"^^ . _:genid71 . _:genid71 . _:genid71 . _:genid71 "Method by which detector signal is acquired by the data system."^^ . _:genid71 "PSI:MS"^^ . . . _:genid72 . _:genid72 . _:genid72 . _:genid72 . "The resolving power of the detector to detect the smallest difference between two ions so that the valley between them is a specified fraction of the peak height."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000028"^^ . "detector resolution"^^ . _:genid73 . _:genid73 . _:genid73 . _:genid73 "The resolving power of the detector to detect the smallest difference between two ions so that the valley between them is a specified fraction of the peak height."^^ . _:genid73 "PSI:MS"^^ . _:genid74 . _:genid74 . _:genid74 . _:genid74 "value-type:xsd:float"^^ . _:genid74 "The allowed value-type for this CV term."^^ . . . _:genid75 . _:genid75 . _:genid75 . _:genid75 . _:genid76 . _:genid76 . _:genid76 . _:genid76 . "The rate of signal sampling (measurement) with respect to time."^^ . "value-type:xsd:float"^^ . "ADC Sampling Frequency"^^ . "MS"^^ . "MS:1000029"^^ . "sampling frequency"^^ . _:genid77 . _:genid77 . _:genid77 . _:genid77 "The rate of signal sampling (measurement) with respect to time."^^ . _:genid77 "PSI:MS"^^ . _:genid78 . _:genid78 . _:genid78 . _:genid78 "value-type:xsd:float"^^ . _:genid78 "The allowed value-type for this CV term."^^ . . "OBSOLETE Name of instrument vendor."^^ . "MS"^^ . "MS:1000030"^^ . "This term was made obsolete because it was replaced by instrument model (MS:1000031)."^^ . "vendor"^^ . "true"^^ . _:genid79 . _:genid79 . _:genid79 . _:genid79 "OBSOLETE Name of instrument vendor."^^ . _:genid79 "PSI:MS"^^ . . _:genid80 . _:genid80 . _:genid80 . _:genid80 . "Instrument model name not including the vendor's name."^^ . "MS"^^ . "MS:1000031"^^ . "instrument model"^^ . _:genid81 . _:genid81 . _:genid81 . _:genid81 "Instrument model name not including the vendor's name."^^ . _:genid81 "PSI:MS"^^ . . . _:genid82 . _:genid82 . _:genid82 . _:genid82 . "Free text description of a single customization made to the instrument; for several modifications, use several entries."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000032"^^ . "customization"^^ . _:genid83 . _:genid83 . _:genid83 . _:genid83 "Free text description of a single customization made to the instrument; for several modifications, use several entries."^^ . _:genid83 "PSI:MS"^^ . _:genid84 . _:genid84 . _:genid84 . _:genid84 "value-type:xsd:string"^^ . _:genid84 "The allowed value-type for this CV term."^^ . . . "The removal of isotope peaks to represent the fragment ion as one data point and is commonly done to reduce complexity. It is done in conjunction with the charge state deconvolution."^^ . "MS"^^ . "MS:1000033"^^ . "deisotoping"^^ . _:genid85 . _:genid85 . _:genid85 . _:genid85 "The removal of isotope peaks to represent the fragment ion as one data point and is commonly done to reduce complexity. It is done in conjunction with the charge state deconvolution."^^ . _:genid85 "PSI:MS"^^ . . . "The determination of the mass of an ion based on the mass spectral peaks that represent multiple-charge ions."^^ . "MS"^^ . "MS:1000034"^^ . "charge deconvolution"^^ . _:genid86 . _:genid86 . _:genid86 . _:genid86 "The determination of the mass of an ion based on the mass spectral peaks that represent multiple-charge ions."^^ . _:genid86 "PSI:MS"^^ . . . "Spectral peak processing conducted on the acquired data to convert profile data to centroided data."^^ . "MS"^^ . "MS:1000035"^^ . "peak picking"^^ . _:genid87 . _:genid87 . _:genid87 . _:genid87 "Spectral peak processing conducted on the acquired data to convert profile data to centroided data."^^ . _:genid87 "PSI:MS"^^ . . "OBSOLETE."^^ . "MS"^^ . "MS:1000036"^^ . "This term was made obsolete because ."^^ . "scan mode"^^ . "true"^^ . _:genid88 . _:genid88 . _:genid88 . _:genid88 "OBSOLETE."^^ . _:genid88 "PSI:MS"^^ . . "OBSOLETE Terms to describe the polarity setting of the instrument."^^ . "MS"^^ . "MS:1000037"^^ . "This term was made obsolete because it was redundant with the Pato Ontology term polarity (UO:0002186)."^^ . "polarity"^^ . "true"^^ . _:genid89 . _:genid89 . _:genid89 . _:genid89 "OBSOLETE Terms to describe the polarity setting of the instrument."^^ . _:genid89 "PSI:MS"^^ . . "OBSOLETE Acquisition time in minutes."^^ . "MS"^^ . "MS:1000038"^^ . "This term was made obsolete because it was redundant with Unit Ontology minute (UO:0000031)."^^ . "minute"^^ . "true"^^ . _:genid90 . _:genid90 . _:genid90 . _:genid90 "OBSOLETE Acquisition time in minutes."^^ . _:genid90 "PSI:MS"^^ . . "OBSOLETE Acquisition time in seconds."^^ . "MS"^^ . "MS:1000039"^^ . "This term was made obsolete because it was redundant with Unit Ontology second (UO:0000010)."^^ . "second"^^ . "true"^^ . _:genid91 . _:genid91 . _:genid91 . _:genid91 "OBSOLETE Acquisition time in seconds."^^ . _:genid91 "PSI:MS"^^ . . . "Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated."^^ . "Th"^^ . "mass-to-charge ratio"^^ . "thomson"^^ . "MS"^^ . "MS:1000040"^^ . "m/z"^^ . _:genid92 . _:genid92 . _:genid92 . _:genid92 "Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated."^^ . _:genid92 "PSI:MS"^^ . . . . _:genid93 . _:genid93 . _:genid93 . _:genid93 . "Number of net charges, positive or negative, on an ion."^^ . "value-type:xsd:int"^^ . "z"^^ . "MS"^^ . "MS:1000041"^^ . "charge state"^^ . _:genid94 . _:genid94 . _:genid94 . _:genid94 "Number of net charges, positive or negative, on an ion."^^ . _:genid94 "PSI:MS"^^ . _:genid95 . _:genid95 . _:genid95 . _:genid95 "value-type:xsd:int"^^ . _:genid95 "The allowed value-type for this CV term."^^ . . . _:genid96 . _:genid96 . _:genid96 . _:genid96 . _:genid97 . _:genid97 . _:genid97 . _:genid97 . _:genid98 . _:genid98 . _:genid98 . _:genid98 . _:genid99 . _:genid99 . _:genid99 . _:genid99 . _:genid100 . _:genid100 . _:genid100 . _:genid100 . _:genid101 . _:genid101 . _:genid101 . _:genid101 . _:genid102 . _:genid102 . _:genid102 . _:genid102 . "Intensity of ions as measured by the height or area of a peak in a mass spectrum."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000042"^^ . "peak intensity"^^ . _:genid103 . _:genid103 . _:genid103 . _:genid103 "Intensity of ions as measured by the height or area of a peak in a mass spectrum."^^ . _:genid103 "PSI:MS"^^ . _:genid104 . _:genid104 . _:genid104 . _:genid104 "value-type:xsd:float"^^ . _:genid104 "The allowed value-type for this CV term."^^ . . . "Intensity units are commonly arbitrary. Detected in counts per second (cps) when using counting detectors, but measured in volts when using analog detectors."^^ . "MS"^^ . "MS:1000043"^^ . "intensity unit"^^ . _:genid105 . _:genid105 . _:genid105 . _:genid105 "Intensity units are commonly arbitrary. Detected in counts per second (cps) when using counting detectors, but measured in volts when using analog detectors."^^ . _:genid105 "PSI:MS"^^ . . _:genid106 . _:genid106 . _:genid106 . _:genid106 . "Fragmentation method used for dissociation or fragmentation."^^ . "MS"^^ . "Activation Method"^^ . "MS:1000044"^^ . "dissociation method"^^ . _:genid107 . _:genid107 . _:genid107 . _:genid107 "Fragmentation method used for dissociation or fragmentation."^^ . _:genid107 "PSI:MS"^^ . . . _:genid108 . _:genid108 . _:genid108 . _:genid108 . _:genid109 . _:genid109 . _:genid109 . _:genid109 . "Energy for an ion experiencing collision with a stationary gas particle resulting in dissociation of the ion."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000045"^^ . "collision energy"^^ . _:genid110 . _:genid110 . _:genid110 . _:genid110 "Energy for an ion experiencing collision with a stationary gas particle resulting in dissociation of the ion."^^ . _:genid110 "PSI:MS"^^ . _:genid111 . _:genid111 . _:genid111 . _:genid111 "value-type:xsd:float"^^ . _:genid111 "The allowed value-type for this CV term."^^ . . . "OBSOLETE Energy units are represented in either eV or Joules."^^ . "MS"^^ . "MS:1000046"^^ . "This term was made obsolete because it was redundant with the Unit Ontology term energy unit (UO:0000111)."^^ . "energy unit"^^ . "true"^^ . _:genid112 . _:genid112 . _:genid112 . _:genid112 "OBSOLETE Energy units are represented in either eV or Joules."^^ . _:genid112 "PSI:MS"^^ . . . "State if the sample is in emulsion form."^^ . "MS"^^ . "MS:1000047"^^ . "emulsion"^^ . _:genid113 . _:genid113 . _:genid113 . _:genid113 "State if the sample is in emulsion form."^^ . _:genid113 "PSI:MS"^^ . . . "State if the sample is in gaseous form."^^ . "MS"^^ . "MS:1000048"^^ . "gaseous sample state"^^ . _:genid114 . _:genid114 . _:genid114 . _:genid114 "State if the sample is in gaseous form."^^ . _:genid114 "PSI:MS"^^ . . . "State if the sample is in liquid form."^^ . "MS"^^ . "MS:1000049"^^ . "liquid sample state"^^ . _:genid115 . _:genid115 . _:genid115 . _:genid115 "State if the sample is in liquid form."^^ . _:genid115 "PSI:MS"^^ . . . "State if the sample is in solid form."^^ . "MS"^^ . "MS:1000050"^^ . "solid sample state"^^ . _:genid116 . _:genid116 . _:genid116 . _:genid116 "State if the sample is in solid form."^^ . _:genid116 "PSI:MS"^^ . . . "State if the sample is in solution form."^^ . "MS"^^ . "MS:1000051"^^ . "solution"^^ . _:genid117 . _:genid117 . _:genid117 . _:genid117 "State if the sample is in solution form."^^ . _:genid117 "PSI:MS"^^ . . . "State if the sample is in suspension form."^^ . "MS"^^ . "MS:1000052"^^ . "suspension"^^ . _:genid118 . _:genid118 . _:genid118 . _:genid118 "State if the sample is in suspension form."^^ . _:genid118 "PSI:MS"^^ . . . _:genid119 . _:genid119 . _:genid119 . _:genid119 . "Sample batch lot identifier."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000053"^^ . "sample batch"^^ . _:genid120 . _:genid120 . _:genid120 . _:genid120 "Sample batch lot identifier."^^ . _:genid120 "PSI:MS"^^ . _:genid121 . _:genid121 . _:genid121 . _:genid121 "value-type:xsd:string"^^ . _:genid121 "The allowed value-type for this CV term."^^ . . "OBSOLETE Chromatographic conditions used to obtain the sample."^^ . "MS"^^ . "MS:1000054"^^ . "This former purgatory term was made obsolete."^^ . "chromatography"^^ . "true"^^ . _:genid122 . _:genid122 . _:genid122 . _:genid122 "OBSOLETE Chromatographic conditions used to obtain the sample."^^ . _:genid122 "PSI:MS"^^ . . . "Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix."^^ . "CF-FAB"^^ . "MS"^^ . "MS:1000055"^^ . "continuous flow fast atom bombardment"^^ . _:genid123 . _:genid123 . _:genid123 . _:genid123 "Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix."^^ . _:genid123 "PSI:MS"^^ . . . "The sample is directly inserted into the ion source, usually on the end of a heatable probe."^^ . "MS"^^ . "MS:1000056"^^ . "direct inlet"^^ . _:genid124 . _:genid124 . _:genid124 . _:genid124 "The sample is directly inserted into the ion source, usually on the end of a heatable probe."^^ . _:genid124 "PSI:MS"^^ . . . "Inlet used for introducing the liquid sample into an electrospray ionization source."^^ . "MS"^^ . "MS:1000057"^^ . "electrospray inlet"^^ . _:genid125 . _:genid125 . _:genid125 . _:genid125 "Inlet used for introducing the liquid sample into an electrospray ionization source."^^ . _:genid125 "PSI:MS"^^ . . . "Sample is directly injected or infused into the ionization source."^^ . "MS"^^ . "MS:1000058"^^ . "flow injection analysis"^^ . _:genid126 . _:genid126 . _:genid126 . _:genid126 "Sample is directly injected or infused into the ionization source."^^ . _:genid126 "PSI:MS"^^ . . . "A gas discharge ion source in which the energy to the plasma is supplied by electromagnetic induction."^^ . "MS"^^ . "MS:1000059"^^ . "inductively coupled plasma"^^ . _:genid127 . _:genid127 . _:genid127 . _:genid127 "A gas discharge ion source in which the energy to the plasma is supplied by electromagnetic induction."^^ . _:genid127 "PSI:MS"^^ . . . "The continuous flow of solution of a sample into the ionization source."^^ . "MS"^^ . "MS:1000060"^^ . "infusion"^^ . _:genid128 . _:genid128 . _:genid128 . _:genid128 "The continuous flow of solution of a sample into the ionization source."^^ . _:genid128 "PSI:MS"^^ . . . "A device that separates carrier gas from gaseous analyte molecules on the basis of diffusivity."^^ . "MS"^^ . "MS:1000061"^^ . "jet separator"^^ . _:genid129 . _:genid129 . _:genid129 . _:genid129 "A device that separates carrier gas from gaseous analyte molecules on the basis of diffusivity."^^ . _:genid129 "PSI:MS"^^ . . . "A device to separate carrier molecules from analyte molecules on the basis of ease of diffusion across a semipermeable membrane."^^ . "MS"^^ . "MS:1000062"^^ . "membrane separator"^^ . _:genid130 . _:genid130 . _:genid130 . _:genid130 "A device to separate carrier molecules from analyte molecules on the basis of ease of diffusion across a semipermeable membrane."^^ . _:genid130 "PSI:MS"^^ . . . "Continuous moving surface in the form of a belt which passes through an ion source carrying analyte molecules."^^ . "MS"^^ . "MS:1000063"^^ . "moving belt"^^ . _:genid131 . _:genid131 . _:genid131 . _:genid131 "Continuous moving surface in the form of a belt which passes through an ion source carrying analyte molecules."^^ . _:genid131 "PSI:MS"^^ . . . "Continuous moving surface in the form of a wire which passes through an ion source carrying analyte molecules."^^ . "MS"^^ . "MS:1000064"^^ . "moving wire"^^ . _:genid132 . _:genid132 . _:genid132 . _:genid132 "Continuous moving surface in the form of a wire which passes through an ion source carrying analyte molecules."^^ . _:genid132 "PSI:MS"^^ . . . "A division of flowing stream of liquid into two streams."^^ . "MS"^^ . "MS:1000065"^^ . "open split"^^ . _:genid133 . _:genid133 . _:genid133 . _:genid133 "A division of flowing stream of liquid into two streams."^^ . _:genid133 "PSI:MS"^^ . . . "Method for generating ions from a solution of an analyte."^^ . "MS"^^ . "MS:1000066"^^ . "particle beam"^^ . _:genid134 . _:genid134 . _:genid134 . _:genid134 "Method for generating ions from a solution of an analyte."^^ . _:genid134 "PSI:MS"^^ . . . "A sample inlet method involving a reservoir."^^ . "MS"^^ . "MS:1000067"^^ . "reservoir"^^ . _:genid135 . _:genid135 . _:genid135 . _:genid135 "A sample inlet method involving a reservoir."^^ . _:genid135 "PSI:MS"^^ . . . "A disc composed of a flexible material that seals the entrance to the reservoir. Can also be entrance to the vacuum chamber."^^ . "MS"^^ . "MS:1000068"^^ . "septum"^^ . _:genid136 . _:genid136 . _:genid136 . _:genid136 "A disc composed of a flexible material that seals the entrance to the reservoir. Can also be entrance to the vacuum chamber."^^ . _:genid136 "PSI:MS"^^ . . . "A method for generating gas phase ions from a solution of an analyte by rapid heating of the sample."^^ . "MS"^^ . "MS:1000069"^^ . "thermospray inlet"^^ . _:genid137 . _:genid137 . _:genid137 . _:genid137 "A method for generating gas phase ions from a solution of an analyte by rapid heating of the sample."^^ . _:genid137 "PSI:MS"^^ . . . "Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization."^^ . "APCI"^^ . "MS"^^ . "MS:1000070"^^ . "atmospheric pressure chemical ionization"^^ . _:genid138 . _:genid138 . _:genid138 . _:genid138 "Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization."^^ . _:genid138 "PSI:MS"^^ . . . "The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization."^^ . "CI"^^ . "MS"^^ . "MS:1000071"^^ . "chemical ionization"^^ . _:genid139 . _:genid139 . _:genid139 . _:genid139 "The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization."^^ . _:genid139 "PSI:MS"^^ . . "OBSOLETE The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended."^^ . "EI"^^ . "MS"^^ . "MS:1000072"^^ . "This term was made obsolete because it was replaced by electron ionization (MS:1000389)."^^ . "Electronic Ionization"^^ . "true"^^ . _:genid140 . _:genid140 . _:genid140 . _:genid140 "OBSOLETE The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended."^^ . _:genid140 "PSI:MS"^^ . . . "A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended."^^ . "ESI"^^ . "MS"^^ . "MS:1000073"^^ . "electrospray ionization"^^ . _:genid141 . _:genid141 . _:genid141 . _:genid141 "A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended."^^ . _:genid141 "PSI:MS"^^ . . . "The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization."^^ . "FAB"^^ . "MS"^^ . "MS:1000074"^^ . "fast atom bombardment ionization"^^ . _:genid142 . _:genid142 . _:genid142 . _:genid142 "The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization."^^ . _:genid142 "PSI:MS"^^ . . . "The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization."^^ . "MALDI"^^ . "MS"^^ . "MS:1000075"^^ . "matrix-assisted laser desorption ionization"^^ . _:genid143 . _:genid143 . _:genid143 . _:genid143 "The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization."^^ . _:genid143 "PSI:MS"^^ . . "OBSOLETE."^^ . "MS"^^ . "MS:1000076"^^ . "This term was made obsolete because it was replaced by negative scan (MS:1000129)."^^ . "negative ion mode"^^ . "true"^^ . _:genid144 . _:genid144 . _:genid144 . _:genid144 "OBSOLETE."^^ . _:genid144 "PSI:MS"^^ . . "OBSOLETE."^^ . "MS"^^ . "MS:1000077"^^ . "This term was made obsolete because it was replaced by positive scan (MS:1000130)."^^ . "positive ion mode"^^ . "true"^^ . _:genid145 . _:genid145 . _:genid145 . _:genid145 "OBSOLETE."^^ . _:genid145 "PSI:MS"^^ . . . "A linear ion trap mass spectrometer where ions are ejected along the axis of the analyzer."^^ . "MS"^^ . "MS:1000078"^^ . "axial ejection linear ion trap"^^ . _:genid146 . _:genid146 . _:genid146 . _:genid146 "A linear ion trap mass spectrometer where ions are ejected along the axis of the analyzer."^^ . _:genid146 "PSI:MS"^^ . . . "A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z."^^ . "FT_ICR"^^ . "MS"^^ . "MS:1000079"^^ . "fourier transform ion cyclotron resonance mass spectrometer"^^ . _:genid147 . _:genid147 . _:genid147 . _:genid147 "A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z."^^ . _:genid147 "PSI:MS"^^ . . . "A device that produces a magnetic field perpendicular to a charged particle beam that deflects the beam to an extent that is proportional to the particle momentum per unit charge. For a monoenergetic beam, the deflection is proportional to m/z."^^ . "MS"^^ . "MS:1000080"^^ . "magnetic sector"^^ . _:genid148 . _:genid148 . _:genid148 . _:genid148 "A device that produces a magnetic field perpendicular to a charged particle beam that deflects the beam to an extent that is proportional to the particle momentum per unit charge. For a monoenergetic beam, the deflection is proportional to m/z."^^ . _:genid148 "PSI:MS"^^ . . . "A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis."^^ . "MS"^^ . "MS:1000081"^^ . "quadrupole"^^ . _:genid149 . _:genid149 . _:genid149 . _:genid149 "A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis."^^ . _:genid149 "PSI:MS"^^ . . . "Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials."^^ . "Paul Ion trap"^^ . "QIT"^^ . "Quistor"^^ . "MS"^^ . "MS:1000082"^^ . "quadrupole ion trap"^^ . _:genid150 . _:genid150 . _:genid150 . _:genid150 "Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials."^^ . _:genid150 "PSI:MS"^^ . . . "A linear ion trap mass spectrometer where ions are ejected along the radius of the analyzer."^^ . "MS"^^ . "MS:1000083"^^ . "radial ejection linear ion trap"^^ . _:genid151 . _:genid151 . _:genid151 . _:genid151 "A linear ion trap mass spectrometer where ions are ejected along the radius of the analyzer."^^ . _:genid151 "PSI:MS"^^ . . . "Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy."^^ . "TOF"^^ . "MS"^^ . "MS:1000084"^^ . "time-of-flight"^^ . _:genid152 . _:genid152 . _:genid152 . _:genid152 "Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy."^^ . _:genid152 "PSI:MS"^^ . . . "An attribute of resolution when recording the detector response in absence of the analyte."^^ . "MS"^^ . "MS:1000085"^^ . "baseline"^^ . _:genid153 . _:genid153 . _:genid153 . _:genid153 "An attribute of resolution when recording the detector response in absence of the analyte."^^ . _:genid153 "PSI:MS"^^ . . . "A measure of resolution represented as width of the peak at half peak height."^^ . "FWHM"^^ . "MS"^^ . "MS:1000086"^^ . "full width at half-maximum"^^ . _:genid154 . _:genid154 . _:genid154 . _:genid154 "A measure of resolution represented as width of the peak at half peak height."^^ . _:genid154 "PSI:MS"^^ . . . "An attribute of resolution when the ratio between adjacent signals is 10% of the signal height."^^ . "MS"^^ . "MS:1000087"^^ . "ten percent valley"^^ . _:genid155 . _:genid155 . _:genid155 . _:genid155 "An attribute of resolution when the ratio between adjacent signals is 10% of the signal height."^^ . _:genid155 "PSI:MS"^^ . . "OBSOLETE When resolution is constant with respect to m/z."^^ . "MS"^^ . "MS:1000088"^^ . "This child of the former purgatory term resolution type was made obsolete."^^ . "constant"^^ . "true"^^ . _:genid156 . _:genid156 . _:genid156 . _:genid156 "OBSOLETE When resolution is constant with respect to m/z."^^ . _:genid156 "PSI:MS"^^ . . "OBSOLETE When resolution is proportional with respect to m/z."^^ . "MS"^^ . "MS:1000089"^^ . "This child of the former purgatory term resolution type was made obsolete."^^ . "proportional"^^ . "true"^^ . _:genid157 . _:genid157 . _:genid157 . _:genid157 "OBSOLETE When resolution is proportional with respect to m/z."^^ . _:genid157 "PSI:MS"^^ . . "OBSOLETE A variation of instrument where a selected mass is scanned."^^ . "MS"^^ . "MS:1000090"^^ . "This child of the former purgatory term Scan Function was made obsolete."^^ . "mass scan"^^ . "true"^^ . _:genid158 . _:genid158 . _:genid158 . _:genid158 "OBSOLETE A variation of instrument where a selected mass is scanned."^^ . _:genid158 "PSI:MS"^^ . . "OBSOLETE Please see Single Ion Monitoring."^^ . "MS"^^ . "MS:1000091"^^ . "This child of the former purgatory term Scan Function was made obsolete."^^ . "selected ion detection"^^ . "true"^^ . _:genid159 . _:genid159 . _:genid159 . _:genid159 "OBSOLETE Please see Single Ion Monitoring."^^ . _:genid159 "PSI:MS"^^ . . . "High to low direction in terms of m/z of the scan for scanning analyzers."^^ . "MS"^^ . "MS:1000092"^^ . "decreasing m/z scan"^^ . _:genid160 . _:genid160 . _:genid160 . _:genid160 "High to low direction in terms of m/z of the scan for scanning analyzers."^^ . _:genid160 "PSI:MS"^^ . . . "Low to high direction in terms of m/z of the scan for scanning analyzers."^^ . "MS"^^ . "MS:1000093"^^ . "increasing m/z scan"^^ . _:genid161 . _:genid161 . _:genid161 . _:genid161 "Low to high direction in terms of m/z of the scan for scanning analyzers."^^ . _:genid161 "PSI:MS"^^ . . . "The mass scan is done in exponential mode."^^ . "MS"^^ . "MS:1000094"^^ . "exponential"^^ . _:genid162 . _:genid162 . _:genid162 . _:genid162 "The mass scan is done in exponential mode."^^ . _:genid162 "PSI:MS"^^ . . . "OBSOLETE The mass scan is done in linear mode."^^ . "MS"^^ . "MS:1000095"^^ . "This term was made obsolete because it was redundant with the Pato Ontology term linear (UO:0001199)."^^ . "linear"^^ . "true"^^ . _:genid163 . _:genid163 . _:genid163 . _:genid163 "OBSOLETE The mass scan is done in linear mode."^^ . _:genid163 "PSI:MS"^^ . . . "The mass scan is done in quadratic mode."^^ . "MS"^^ . "MS:1000096"^^ . "quadratic"^^ . _:genid164 . _:genid164 . _:genid164 . _:genid164 "The mass scan is done in quadratic mode."^^ . _:genid164 "PSI:MS"^^ . . "OBSOLETE A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum."^^ . "MS"^^ . "MS:1000097"^^ . "This former purgatory term was made obsolete."^^ . "constant neutral mass loss"^^ . "true"^^ . _:genid165 . _:genid165 . _:genid165 . _:genid165 "OBSOLETE A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum."^^ . _:genid165 "PSI:MS"^^ . . "OBSOLETE Data acquired when monitoring the ion current of a few specific m/z values. Remap to MS:1000205 -Selected Ion Monitoring."^^ . "MS"^^ . "MS:1000098"^^ . "This former purgatory term was made obsolete."^^ . "multiple ion monitoring"^^ . "true"^^ . _:genid166 . _:genid166 . _:genid166 . _:genid166 "OBSOLETE Data acquired when monitoring the ion current of a few specific m/z values. Remap to MS:1000205 -Selected Ion Monitoring."^^ . _:genid166 "PSI:MS"^^ . . "OBSOLETE This term is not recommended. See Selected Reaction Monitoring."^^ . "MRM"^^ . "MS"^^ . "MS:1000099"^^ . "This term was made obsolete because it was merged with selected reaction monitoring (MS:1000206)."^^ . "multiple reaction monitoring"^^ . "true"^^ . _:genid167 . _:genid167 . _:genid167 . _:genid167 "OBSOLETE This term is not recommended. See Selected Reaction Monitoring."^^ . _:genid167 "PSI:MS"^^ . . "OBSOLETE The specific scan function or process that will record a precursor ion spectrum."^^ . "MS"^^ . "MS:1000100"^^ . "This former purgatory term was made obsolete."^^ . "precursor ion scan"^^ . "true"^^ . _:genid168 . _:genid168 . _:genid168 . _:genid168 "OBSOLETE The specific scan function or process that will record a precursor ion spectrum."^^ . _:genid168 "PSI:MS"^^ . . "OBSOLETE The specific scan function or process that records product ion spectrum."^^ . "MS"^^ . "MS:1000101"^^ . "This former purgatory term was made obsolete."^^ . "product ion scan"^^ . "true"^^ . _:genid169 . _:genid169 . _:genid169 . _:genid169 "OBSOLETE The specific scan function or process that records product ion spectrum."^^ . _:genid169 "PSI:MS"^^ . . "OBSOLETE The operation of a mass spectrometer to monitor a single ion rather than scanning entire mass spectrum."^^ . "MS"^^ . "MS:1000102"^^ . "This term was made obsolete because it was replaced by single ion monitoring (MS:100205)."^^ . "single ion monitoring"^^ . "true"^^ . _:genid170 . _:genid170 . _:genid170 . _:genid170 "OBSOLETE The operation of a mass spectrometer to monitor a single ion rather than scanning entire mass spectrum."^^ . _:genid170 "PSI:MS"^^ . . "OBSOLETE This term is not recommended. See Selected Reaction Monitoring."^^ . "MS"^^ . "MS:1000103"^^ . "This term was made obsolete because it was replaced by selected reaction monitoring (MS:1000206)."^^ . "single reaction monitoring"^^ . "true"^^ . _:genid171 . _:genid171 . _:genid171 . _:genid171 "OBSOLETE This term is not recommended. See Selected Reaction Monitoring."^^ . _:genid171 "PSI:MS"^^ . . "OBSOLETE None."^^ . "MS"^^ . "MS:1000104"^^ . "This term was made obsolete because ."^^ . "None ??"^^ . "true"^^ . _:genid172 . _:genid172 . _:genid172 . _:genid172 "OBSOLETE None."^^ . _:genid172 "PSI:MS"^^ . . . "Reflectron is off."^^ . "MS"^^ . "MS:1000105"^^ . "reflectron off"^^ . _:genid173 . _:genid173 . _:genid173 . _:genid173 "Reflectron is off."^^ . _:genid173 "PSI:MS"^^ . . . "Reflectron is on."^^ . "MS"^^ . "MS:1000106"^^ . "reflectron on"^^ . _:genid174 . _:genid174 . _:genid174 . _:genid174 "Reflectron is on."^^ . _:genid174 "PSI:MS"^^ . . . "A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse."^^ . "Channeltron Detector"^^ . "MS"^^ . "MS:1000107"^^ . "channeltron"^^ . _:genid175 . _:genid175 . _:genid175 . _:genid175 "A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse."^^ . _:genid175 "PSI:MS"^^ . . . "A surface that is held at high potential so that ions striking the surface produce electrons that are subsequently detected."^^ . "MS"^^ . "MS:1000108"^^ . "conversion dynode electron multiplier"^^ . _:genid176 . _:genid176 . _:genid176 . _:genid176 "A surface that is held at high potential so that ions striking the surface produce electrons that are subsequently detected."^^ . _:genid176 "PSI:MS"^^ . . . "A detector in which ions strike a conversion dynode to produce electrons that in turn generate photons through a phosphorescent screen that are detected by a photomultiplier."^^ . "MS"^^ . "ion-to-photon detector"^^ . "MS:1000109"^^ . "conversion dynode photomultiplier"^^ . _:genid177 . _:genid177 . _:genid177 . _:genid177 "A detector in which ions strike a conversion dynode to produce electrons that in turn generate photons through a phosphorescent screen that are detected by a photomultiplier."^^ . _:genid177 "PSI:MS"^^ . . . "Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector."^^ . "Daly"^^ . "MS"^^ . "MS:1000110"^^ . "daly detector"^^ . _:genid178 . _:genid178 . _:genid178 . _:genid178 "Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector."^^ . _:genid178 "PSI:MS"^^ . . . "A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons."^^ . "EMT"^^ . "MS"^^ . "MS:1000111"^^ . "electron multiplier tube"^^ . _:genid179 . _:genid179 . _:genid179 . _:genid179 "A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons."^^ . _:genid179 "PSI:MS"^^ . . . "A conducting cup or chamber that intercepts a charged particle beam and is electrically connected to a current measuring device."^^ . "MS"^^ . "MS:1000112"^^ . "faraday cup"^^ . _:genid180 . _:genid180 . _:genid180 . _:genid180 "A conducting cup or chamber that intercepts a charged particle beam and is electrically connected to a current measuring device."^^ . _:genid180 "PSI:MS"^^ . . . "An array of detectors for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane."^^ . "MS"^^ . "MS:1000113"^^ . "focal plane array"^^ . _:genid181 . _:genid181 . _:genid181 . _:genid181 "An array of detectors for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane."^^ . _:genid181 "PSI:MS"^^ . . . "A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate."^^ . "multichannel plate"^^ . "MS"^^ . "MS:1000114"^^ . "microchannel plate detector"^^ . _:genid182 . _:genid182 . _:genid182 . _:genid182 "A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate."^^ . _:genid182 "PSI:MS"^^ . . . "A detector system commonly used in inductively coupled plasma mass spectrometers."^^ . "MS"^^ . "MS:1000115"^^ . "multi-collector"^^ . _:genid183 . _:genid183 . _:genid183 . _:genid183 "A detector system commonly used in inductively coupled plasma mass spectrometers."^^ . _:genid183 "PSI:MS"^^ . . . "A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected."^^ . "PMT"^^ . "MS"^^ . "MS:1000116"^^ . "photomultiplier"^^ . _:genid184 . _:genid184 . _:genid184 . _:genid184 "A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected."^^ . _:genid184 "PSI:MS"^^ . . . "Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers."^^ . "ADC"^^ . "MS"^^ . "MS:1000117"^^ . "analog-digital converter"^^ . _:genid185 . _:genid185 . _:genid185 . _:genid185 "Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers."^^ . _:genid185 "PSI:MS"^^ . . . "Definition to do."^^ . "MS"^^ . "MS:1000118"^^ . "pulse counting"^^ . _:genid186 . _:genid186 . _:genid186 . _:genid186 "Definition to do."^^ . _:genid186 "PSI:MS"^^ . . . "A device for converting a signal of sporadic pluses into a digital representation of their time indices."^^ . "TDC"^^ . "MS"^^ . "MS:1000119"^^ . "time-digital converter"^^ . _:genid187 . _:genid187 . _:genid187 . _:genid187 "A device for converting a signal of sporadic pluses into a digital representation of their time indices."^^ . _:genid187 "PSI:MS"^^ . . . "A detector acquisition mode used for detecting transient signals."^^ . "MS"^^ . "MS:1000120"^^ . "transient recorder"^^ . _:genid188 . _:genid188 . _:genid188 . _:genid188 "A detector acquisition mode used for detecting transient signals."^^ . _:genid188 "PSI:MS"^^ . . . "The brand of instruments from the joint venture between Applied Biosystems and MDS Analytical Technologies (formerly MDS SCIEX). Previously branded as \"Applied Biosystems|MDS SCIEX\"."^^ . "MS"^^ . "Applied Biosystems|MDS SCIEX"^^ . "MS:1000121"^^ . "SCIEX instrument model"^^ . _:genid189 . _:genid189 . _:genid189 . _:genid189 "The brand of instruments from the joint venture between Applied Biosystems and MDS Analytical Technologies (formerly MDS SCIEX). Previously branded as \"Applied Biosystems|MDS SCIEX\"."^^ . _:genid189 "PSI:MS"^^ . . . "Bruker Daltonics' instrument model."^^ . "MS"^^ . "MS:1000122"^^ . "Bruker Daltonics instrument model"^^ . _:genid190 . _:genid190 . _:genid190 . _:genid190 "Bruker Daltonics' instrument model."^^ . _:genid190 "PSI:MS"^^ . . . "IonSpec corporation instrument model."^^ . "MS"^^ . "MS:1000123"^^ . "IonSpec instrument model"^^ . _:genid191 . _:genid191 . _:genid191 . _:genid191 "IonSpec corporation instrument model."^^ . _:genid191 "PSI:MS"^^ . . . "Shimadzu corporation instrument model."^^ . "MS"^^ . "MS:1000124"^^ . "Shimadzu instrument model"^^ . _:genid192 . _:genid192 . _:genid192 . _:genid192 "Shimadzu corporation instrument model."^^ . _:genid192 "PSI:MS"^^ . . . "ThermoFinnigan from Thermo Electron Corporation instrument model."^^ . "MS"^^ . "MS:1000125"^^ . "Thermo Finnigan instrument model"^^ . _:genid193 . _:genid193 . _:genid193 . _:genid193 "ThermoFinnigan from Thermo Electron Corporation instrument model."^^ . _:genid193 "PSI:MS"^^ . . . "Waters Corporation instrument model."^^ . "MS"^^ . "MS:1000126"^^ . "Waters instrument model"^^ . _:genid194 . _:genid194 . _:genid194 . _:genid194 "Waters Corporation instrument model."^^ . _:genid194 "PSI:MS"^^ . . . "Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset."^^ . "Discrete Mass Spectrum"^^ . "MS"^^ . "MS:1000127"^^ . "centroid spectrum"^^ . _:genid195 . _:genid195 . _:genid195 . _:genid195 "Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset."^^ . _:genid195 "PSI:MS"^^ . . . "A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis."^^ . "Continuum Mass Spectrum"^^ . "continuous mass spectrum"^^ . "MS"^^ . "MS:1000128"^^ . "profile spectrum"^^ . _:genid196 . _:genid196 . _:genid196 . _:genid196 "A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis."^^ . _:genid196 "PSI:MS"^^ . . . . "Polarity of the scan is negative."^^ . "MS"^^ . "MS:1000129"^^ . "negative scan"^^ . _:genid197 . _:genid197 . _:genid197 . _:genid197 "Polarity of the scan is negative."^^ . _:genid197 "PSI:MS"^^ . . . . "Polarity of the scan is positive."^^ . "MS"^^ . "MS:1000130"^^ . "positive scan"^^ . _:genid198 . _:genid198 . _:genid198 . _:genid198 "Polarity of the scan is positive."^^ . _:genid198 "PSI:MS"^^ . . . "The number of counted events observed in one or a group of elements of a detector."^^ . "MS"^^ . "MS:1000131"^^ . "number of detector counts"^^ . _:genid199 . _:genid199 . _:genid199 . _:genid199 "The number of counted events observed in one or a group of elements of a detector."^^ . _:genid199 "PSI:MS"^^ . . . _:genid200 . _:genid200 . _:genid200 . _:genid200 . "The magnitude of a peak or measurement element expressed in terms of the percentage of the magnitude of the base peak intensity."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000132"^^ . "percent of base peak"^^ . _:genid201 . _:genid201 . _:genid201 . _:genid201 "The magnitude of a peak or measurement element expressed in terms of the percentage of the magnitude of the base peak intensity."^^ . _:genid201 "PSI:MS"^^ . _:genid202 . _:genid202 . _:genid202 . _:genid202 "value-type:xsd:float"^^ . _:genid202 "The allowed value-type for this CV term."^^ . . . "The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended."^^ . "CAD"^^ . "CID"^^ . "collisionally activated dissociation"^^ . "MS"^^ . "MS:1000133"^^ . "collision-induced dissociation"^^ . _:genid203 . _:genid203 . _:genid203 . _:genid203 "The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended."^^ . _:genid203 "PSI:MS"^^ . . . "The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization."^^ . "PD"^^ . "MS"^^ . "MS:1000134"^^ . "plasma desorption"^^ . _:genid204 . _:genid204 . _:genid204 . _:genid204 "The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization."^^ . _:genid204 "PSI:MS"^^ . . . "A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra."^^ . "PSD"^^ . "MS"^^ . "MS:1000135"^^ . "post-source decay"^^ . _:genid205 . _:genid205 . _:genid205 . _:genid205 "A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra."^^ . _:genid205 "PSI:MS"^^ . . . "Fragmentation that results from the collision of an ion with a surface."^^ . "SID"^^ . "MS"^^ . "MS:1000136"^^ . "surface-induced dissociation"^^ . _:genid206 . _:genid206 . _:genid206 . _:genid206 "Fragmentation that results from the collision of an ion with a surface."^^ . _:genid206 "PSI:MS"^^ . . "OBSOLETE A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J."^^ . "MS"^^ . "MS:1000137"^^ . "This term was made obsolete because it was redundant with the Unit Ontology term electron volt (UO:0000266)."^^ . "electron volt"^^ . "true"^^ . _:genid207 . _:genid207 . _:genid207 . _:genid207 "OBSOLETE A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J."^^ . _:genid207 "PSI:MS"^^ . . . _:genid208 . _:genid208 . _:genid208 . _:genid208 . _:genid209 . _:genid209 . _:genid209 . _:genid209 . "Instrument setting, expressed in percent, for adjusting collisional energies of ions in an effort to provide equivalent excitation of all ions."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000138"^^ . "normalized collision energy"^^ . _:genid210 . _:genid210 . _:genid210 . _:genid210 "Instrument setting, expressed in percent, for adjusting collisional energies of ions in an effort to provide equivalent excitation of all ions."^^ . _:genid210 "PSI:PI"^^ . _:genid211 . _:genid211 . _:genid211 . _:genid211 "value-type:xsd:float"^^ . _:genid211 "The allowed value-type for this CV term."^^ . . . "Applied Biosystems/MDS SCIEX Q 4000 TRAP MS."^^ . "MS"^^ . "MS:1000139"^^ . "4000 QTRAP"^^ . _:genid212 . _:genid212 . _:genid212 . _:genid212 "Applied Biosystems/MDS SCIEX Q 4000 TRAP MS."^^ . _:genid212 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS."^^ . "MS"^^ . "MS:1000140"^^ . "4700 Proteomics Analyzer"^^ . _:genid213 . _:genid213 . _:genid213 . _:genid213 "Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS."^^ . _:genid213 "PSI:MS"^^ . . . "Bruker Daltonics' apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR."^^ . "MS"^^ . "MS:1000141"^^ . "apex IV"^^ . _:genid214 . _:genid214 . _:genid214 . _:genid214 "Bruker Daltonics' apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR."^^ . _:genid214 "PSI:MS"^^ . . . "Bruker Daltonics' apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR."^^ . "MS"^^ . "MS:1000142"^^ . "apex Q"^^ . _:genid215 . _:genid215 . _:genid215 . _:genid215 "Bruker Daltonics' apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR."^^ . _:genid215 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX API 150EX MS."^^ . "MS"^^ . "MS:1000143"^^ . "API 150EX"^^ . _:genid216 . _:genid216 . _:genid216 . _:genid216 "Applied Biosystems/MDS SCIEX API 150EX MS."^^ . _:genid216 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX API 150EX Prep MS."^^ . "MS"^^ . "MS:1000144"^^ . "API 150EX Prep"^^ . _:genid217 . _:genid217 . _:genid217 . _:genid217 "Applied Biosystems/MDS SCIEX API 150EX Prep MS."^^ . _:genid217 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX API 2000 MS."^^ . "MS"^^ . "MS:1000145"^^ . "API 2000"^^ . _:genid218 . _:genid218 . _:genid218 . _:genid218 "Applied Biosystems/MDS SCIEX API 2000 MS."^^ . _:genid218 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX API 3000 MS."^^ . "MS"^^ . "MS:1000146"^^ . "API 3000"^^ . _:genid219 . _:genid219 . _:genid219 . _:genid219 "Applied Biosystems/MDS SCIEX API 3000 MS."^^ . _:genid219 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX API 4000 MS."^^ . "MS"^^ . "MS:1000147"^^ . "API 4000"^^ . _:genid220 . _:genid220 . _:genid220 . _:genid220 "Applied Biosystems/MDS SCIEX API 4000 MS."^^ . _:genid220 "PSI:MS"^^ . . . "Bruker Daltonics' autoflex II: MALDI TOF."^^ . "MS"^^ . "MS:1000148"^^ . "autoflex II"^^ . _:genid221 . _:genid221 . _:genid221 . _:genid221 "Bruker Daltonics' autoflex II: MALDI TOF."^^ . _:genid221 "PSI:MS"^^ . . . "Bruker Daltonics' autoflex TOF/TOF MS: MALDI TOF."^^ . "MS"^^ . "MS:1000149"^^ . "autoflex TOF/TOF"^^ . _:genid222 . _:genid222 . _:genid222 . _:genid222 "Bruker Daltonics' autoflex TOF/TOF MS: MALDI TOF."^^ . _:genid222 "PSI:MS"^^ . . . "Waters magnetic sector based AutoSpec Ultima NT MS."^^ . "MS"^^ . "MS:1000150"^^ . "Auto Spec Ultima NT"^^ . _:genid223 . _:genid223 . _:genid223 . _:genid223 "Waters magnetic sector based AutoSpec Ultima NT MS."^^ . _:genid223 "PSI:MS"^^ . . . "Bruker Daltonics' BioTOF II: ESI TOF."^^ . "MS"^^ . "MS:1000151"^^ . "BioTOF II"^^ . _:genid224 . _:genid224 . _:genid224 . _:genid224 "Bruker Daltonics' BioTOF II: ESI TOF."^^ . _:genid224 "PSI:MS"^^ . . . "Bruker Daltonics' BioTOF-Q: ESI Q-TOF."^^ . "MS"^^ . "MS:1000152"^^ . "BioTOF-Q"^^ . _:genid225 . _:genid225 . _:genid225 . _:genid225 "Bruker Daltonics' BioTOF-Q: ESI Q-TOF."^^ . _:genid225 "PSI:MS"^^ . . . "ThermoFinnigan DELTA plusAdvantage MS."^^ . "MS"^^ . "MS:1000153"^^ . "DELTA plusAdvantage"^^ . _:genid226 . _:genid226 . _:genid226 . _:genid226 "ThermoFinnigan DELTA plusAdvantage MS."^^ . _:genid226 "PSI:MS"^^ . . . "ThermoFinnigan DELTAplusXP MS."^^ . "MS"^^ . "MS:1000154"^^ . "DELTAplusXP"^^ . _:genid227 . _:genid227 . _:genid227 . _:genid227 "ThermoFinnigan DELTAplusXP MS."^^ . _:genid227 "PSI:MS"^^ . . "OBSOLETE ThermoFinnigan ELEMENT2 MS."^^ . "MS"^^ . "MS:1000155"^^ . "This former purgatory term was made obsolete."^^ . "ELEMENT2"^^ . "true"^^ . _:genid228 . _:genid228 . _:genid228 . _:genid228 "OBSOLETE ThermoFinnigan ELEMENT2 MS."^^ . _:genid228 "PSI:MS"^^ . . . "Bruker Daltonics' esquire 4000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI."^^ . "MS"^^ . "MS:1000156"^^ . "esquire 4000"^^ . _:genid229 . _:genid229 . _:genid229 . _:genid229 "Bruker Daltonics' esquire 4000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI."^^ . _:genid229 "PSI:MS"^^ . . . "Bruker Daltonics' esquire 6000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI."^^ . "MS"^^ . "MS:1000157"^^ . "esquire 6000"^^ . _:genid230 . _:genid230 . _:genid230 . _:genid230 "Bruker Daltonics' esquire 6000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI."^^ . _:genid230 "PSI:MS"^^ . . . "IonSpec Explorer MS."^^ . "MS"^^ . "MS:1000158"^^ . "explorer"^^ . _:genid231 . _:genid231 . _:genid231 . _:genid231 "IonSpec Explorer MS."^^ . _:genid231 "PSI:MS"^^ . . . "Waters oa-ToF based GCT."^^ . "MS"^^ . "MS:1000159"^^ . "GCT"^^ . _:genid232 . _:genid232 . _:genid232 . _:genid232 "Waters oa-ToF based GCT."^^ . _:genid232 "PSI:MS"^^ . . . "Bruker Daltonics' HCT: ESI Q-TOF, Nanospray, APCI, APPI."^^ . "MS"^^ . "MS:1000160"^^ . "HCT"^^ . _:genid233 . _:genid233 . _:genid233 . _:genid233 "Bruker Daltonics' HCT: ESI Q-TOF, Nanospray, APCI, APPI."^^ . _:genid233 "PSI:MS"^^ . . . "Bruker Daltonics' HCTplus: ESI Q-TOF, Nanospray, APCI, APPI."^^ . "MS"^^ . "MS:1000161"^^ . "HCTplus"^^ . _:genid234 . _:genid234 . _:genid234 . _:genid234 "Bruker Daltonics' HCTplus: ESI Q-TOF, Nanospray, APCI, APPI."^^ . _:genid234 "PSI:MS"^^ . . . "IonSpec HiResESI MS."^^ . "MS"^^ . "MS:1000162"^^ . "HiRes ESI"^^ . _:genid235 . _:genid235 . _:genid235 . _:genid235 "IonSpec HiResESI MS."^^ . _:genid235 "PSI:MS"^^ . . . "IonSpec HiResMALDI MS."^^ . "MS"^^ . "MS:1000163"^^ . "HiRes MALDI"^^ . _:genid236 . _:genid236 . _:genid236 . _:genid236 "IonSpec HiResMALDI MS."^^ . _:genid236 "PSI:MS"^^ . . . "Waters IsoPrime MS."^^ . "MS"^^ . "MS:1000164"^^ . "IsoPrime"^^ . _:genid237 . _:genid237 . _:genid237 . _:genid237 "Waters IsoPrime MS."^^ . _:genid237 "PSI:MS"^^ . . . "Waters IsoProbe MS."^^ . "MS"^^ . "MS:1000165"^^ . "IsoProbe"^^ . _:genid238 . _:genid238 . _:genid238 . _:genid238 "Waters IsoProbe MS."^^ . _:genid238 "PSI:MS"^^ . . . "Waters IsoProbe T MS."^^ . "MS"^^ . "MS:1000166"^^ . "IsoProbe T"^^ . _:genid239 . _:genid239 . _:genid239 . _:genid239 "Waters IsoProbe T MS."^^ . _:genid239 "PSI:MS"^^ . . . "ThermoFinnigan LCQ Advantage MS."^^ . "MS"^^ . "MS:1000167"^^ . "LCQ Advantage"^^ . _:genid240 . _:genid240 . _:genid240 . _:genid240 "ThermoFinnigan LCQ Advantage MS."^^ . _:genid240 "PSI:MS"^^ . . . "ThermoFinnigan LCQ Classic MS."^^ . "MS"^^ . "MS:1000168"^^ . "LCQ Classic"^^ . _:genid241 . _:genid241 . _:genid241 . _:genid241 "ThermoFinnigan LCQ Classic MS."^^ . _:genid241 "PSI:MS"^^ . . . "ThermoFinnigan LCQ Deca XP Plus MS."^^ . "MS"^^ . "MS:1000169"^^ . "LCQ Deca XP Plus"^^ . _:genid242 . _:genid242 . _:genid242 . _:genid242 "ThermoFinnigan LCQ Deca XP Plus MS."^^ . _:genid242 "PSI:MS"^^ . . . "Waters oa-ToF based MALDI L."^^ . "MS"^^ . "MS:1000170"^^ . "M@LDI L"^^ . _:genid243 . _:genid243 . _:genid243 . _:genid243 "Waters oa-ToF based MALDI L."^^ . _:genid243 "PSI:MS"^^ . . . "Waters oa-ToF based MALDI LR."^^ . "MS"^^ . "MS:1000171"^^ . "M@LDI LR"^^ . _:genid244 . _:genid244 . _:genid244 . _:genid244 "Waters oa-ToF based MALDI LR."^^ . _:genid244 "PSI:MS"^^ . . . "ThermoFinnigan MAT253 MS."^^ . "MS"^^ . "MS:1000172"^^ . "MAT253"^^ . _:genid245 . _:genid245 . _:genid245 . _:genid245 "ThermoFinnigan MAT253 MS."^^ . _:genid245 "PSI:MS"^^ . . . "ThermoFinnigan MAT900XP MS."^^ . "MS"^^ . "MS:1000173"^^ . "MAT900XP"^^ . _:genid246 . _:genid246 . _:genid246 . _:genid246 "ThermoFinnigan MAT900XP MS."^^ . _:genid246 "PSI:MS"^^ . . . "ThermoFinnigan MAT900XP Trap MS."^^ . "MS"^^ . "MS:1000174"^^ . "MAT900XP Trap"^^ . _:genid247 . _:genid247 . _:genid247 . _:genid247 "ThermoFinnigan MAT900XP Trap MS."^^ . _:genid247 "PSI:MS"^^ . . . "ThermoFinnigan MAT95XP MS."^^ . "MS"^^ . "MS:1000175"^^ . "MAT95XP"^^ . _:genid248 . _:genid248 . _:genid248 . _:genid248 "ThermoFinnigan MAT95XP MS."^^ . _:genid248 "PSI:MS"^^ . . . "ThermoFinnigan MAT95XP Trap MS."^^ . "MS"^^ . "MS:1000176"^^ . "MAT95XP Trap"^^ . _:genid249 . _:genid249 . _:genid249 . _:genid249 "ThermoFinnigan MAT95XP Trap MS."^^ . _:genid249 "PSI:MS"^^ . . . "Bruker Daltonics' microflex: MALDI TOF."^^ . "MS"^^ . "MS:1000177"^^ . "microflex"^^ . _:genid250 . _:genid250 . _:genid250 . _:genid250 "Bruker Daltonics' microflex: MALDI TOF."^^ . _:genid250 "PSI:MS"^^ . . . "Bruker Daltonics' microTOF LC: ESI TOF, Nanospray, APCI, APPI."^^ . "MS"^^ . "MS:1000178"^^ . "microTOF LC"^^ . _:genid251 . _:genid251 . _:genid251 . _:genid251 "Bruker Daltonics' microTOF LC: ESI TOF, Nanospray, APCI, APPI."^^ . _:genid251 "PSI:MS"^^ . . . "ThermoFinnigan NEPTUNE MS."^^ . "MS"^^ . "MS:1000179"^^ . "neptune"^^ . _:genid252 . _:genid252 . _:genid252 . _:genid252 "ThermoFinnigan NEPTUNE MS."^^ . _:genid252 "PSI:MS"^^ . . . "Waters NG-5400 MS."^^ . "MS"^^ . "MS:1000180"^^ . "NG-5400"^^ . _:genid253 . _:genid253 . _:genid253 . _:genid253 "Waters NG-5400 MS."^^ . _:genid253 "PSI:MS"^^ . . . "IonSpec OMEGA MS."^^ . "MS"^^ . "MS:1000181"^^ . "OMEGA"^^ . _:genid254 . _:genid254 . _:genid254 . _:genid254 "IonSpec OMEGA MS."^^ . _:genid254 "PSI:MS"^^ . . . "IonSpec OMEGA-2001 MS."^^ . "MS"^^ . "MS:1000182"^^ . "OMEGA-2001"^^ . _:genid255 . _:genid255 . _:genid255 . _:genid255 "IonSpec OMEGA-2001 MS."^^ . _:genid255 "PSI:MS"^^ . . . "Bruker Daltonics' OmniFlex: MALDI TOF."^^ . "MS"^^ . "MS:1000183"^^ . "OmniFlex"^^ . _:genid256 . _:genid256 . _:genid256 . _:genid256 "Bruker Daltonics' OmniFlex: MALDI TOF."^^ . _:genid256 "PSI:MS"^^ . . . "Waters Platform ICP MS."^^ . "MS"^^ . "MS:1000184"^^ . "Platform ICP"^^ . _:genid257 . _:genid257 . _:genid257 . _:genid257 "Waters Platform ICP MS."^^ . _:genid257 "PSI:MS"^^ . . . "ThermoFinnigan PolarisQ MS."^^ . "MS"^^ . "MS:1000185"^^ . "PolarisQ"^^ . _:genid258 . _:genid258 . _:genid258 . _:genid258 "ThermoFinnigan PolarisQ MS."^^ . _:genid258 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS."^^ . "MS"^^ . "MS:1000186"^^ . "proteomics solution 1"^^ . _:genid259 . _:genid259 . _:genid259 . _:genid259 "Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS."^^ . _:genid259 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX Q TRAP MS."^^ . "MS"^^ . "MS:1000187"^^ . "Q TRAP"^^ . _:genid260 . _:genid260 . _:genid260 . _:genid260 "Applied Biosystems/MDS SCIEX Q TRAP MS."^^ . _:genid260 "PSI:MS"^^ . . . "Waters oa-ToF based Q-Tof micro."^^ . "MS"^^ . "MS:1000188"^^ . "Q-Tof micro"^^ . _:genid261 . _:genid261 . _:genid261 . _:genid261 "Waters oa-ToF based Q-Tof micro."^^ . _:genid261 "PSI:MS"^^ . . . "Waters oa-ToF based Q-Tof Ultima."^^ . "MS"^^ . "MS:1000189"^^ . "Q-Tof Ultima"^^ . _:genid262 . _:genid262 . _:genid262 . _:genid262 "Waters oa-ToF based Q-Tof Ultima."^^ . _:genid262 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX QSTAR MS."^^ . "MS"^^ . "MS:1000190"^^ . "QSTAR"^^ . _:genid263 . _:genid263 . _:genid263 . _:genid263 "Applied Biosystems/MDS SCIEX QSTAR MS."^^ . _:genid263 "PSI:MS"^^ . . . "Waters (triple) quadrupole based micro."^^ . "MS"^^ . "MS:1000191"^^ . "quattro micro"^^ . _:genid264 . _:genid264 . _:genid264 . _:genid264 "Waters (triple) quadrupole based micro."^^ . _:genid264 "PSI:MS"^^ . . . "Waters (triple) quadrupole based Ultima."^^ . "MS"^^ . "MS:1000192"^^ . "Quattro Ultima"^^ . _:genid265 . _:genid265 . _:genid265 . _:genid265 "Waters (triple) quadrupole based Ultima."^^ . _:genid265 "PSI:MS"^^ . . . "ThermoFinnigan Surveyor MSQ MS."^^ . "MS"^^ . "MS:1000193"^^ . "Surveyor MSQ"^^ . _:genid266 . _:genid266 . _:genid266 . _:genid266 "ThermoFinnigan Surveyor MSQ MS."^^ . _:genid266 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX SymBiot I MS."^^ . "MS"^^ . "MS:1000194"^^ . "SymBiot I"^^ . _:genid267 . _:genid267 . _:genid267 . _:genid267 "Applied Biosystems/MDS SCIEX SymBiot I MS."^^ . _:genid267 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX SymBiot XVI MS."^^ . "MS"^^ . "MS:1000195"^^ . "SymBiot XVI"^^ . _:genid268 . _:genid268 . _:genid268 . _:genid268 "Applied Biosystems/MDS SCIEX SymBiot XVI MS."^^ . _:genid268 "PSI:MS"^^ . . . "ThermoFinnigan TEMPUS TOF MS."^^ . "MS"^^ . "MS:1000196"^^ . "TEMPUS TOF"^^ . _:genid269 . _:genid269 . _:genid269 . _:genid269 "ThermoFinnigan TEMPUS TOF MS."^^ . _:genid269 "PSI:MS"^^ . . . "ThermoFinnigan TRACE DSQ MS."^^ . "MS"^^ . "MS:1000197"^^ . "TRACE DSQ"^^ . _:genid270 . _:genid270 . _:genid270 . _:genid270 "ThermoFinnigan TRACE DSQ MS."^^ . _:genid270 "PSI:MS"^^ . . . "ThermoFinnigan TRITON MS."^^ . "MS"^^ . "MS:1000198"^^ . "TRITON"^^ . _:genid271 . _:genid271 . _:genid271 . _:genid271 "ThermoFinnigan TRITON MS."^^ . _:genid271 "PSI:MS"^^ . . . "ThermoFinnigan TSQ Quantum MS."^^ . "MS"^^ . "MS:1000199"^^ . "TSQ Quantum"^^ . _:genid272 . _:genid272 . _:genid272 . _:genid272 "ThermoFinnigan TSQ Quantum MS."^^ . _:genid272 "PSI:MS"^^ . . . "IonSpec Ultima MS."^^ . "MS"^^ . "MS:1000200"^^ . "ultima"^^ . _:genid273 . _:genid273 . _:genid273 . _:genid273 "IonSpec Ultima MS."^^ . _:genid273 "PSI:MS"^^ . . . "Bruker Daltonics' ultraflex: MALDI TOF."^^ . "MS"^^ . "MS:1000201"^^ . "ultraflex"^^ . _:genid274 . _:genid274 . _:genid274 . _:genid274 "Bruker Daltonics' ultraflex: MALDI TOF."^^ . _:genid274 "PSI:MS"^^ . . . "Bruker Daltonics' ultraflex TOF/TOF: MALDI TOF."^^ . "MS"^^ . "MS:1000202"^^ . "ultraflex TOF/TOF"^^ . _:genid275 . _:genid275 . _:genid275 . _:genid275 "Bruker Daltonics' ultraflex TOF/TOF: MALDI TOF."^^ . _:genid275 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX Voyager-DE PRO MS."^^ . "MS"^^ . "MS:1000203"^^ . "Voyager-DE PRO"^^ . _:genid276 . _:genid276 . _:genid276 . _:genid276 "Applied Biosystems/MDS SCIEX Voyager-DE PRO MS."^^ . _:genid276 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX Voyager-DE STR MS."^^ . "MS"^^ . "MS:1000204"^^ . "Voyager-DE STR"^^ . _:genid277 . _:genid277 . _:genid277 . _:genid277 "Applied Biosystems/MDS SCIEX Voyager-DE STR MS."^^ . _:genid277 "PSI:MS"^^ . . . . "The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum."^^ . "Multiple Ion Monitoring"^^ . "SIM"^^ . "MS"^^ . "MIM"^^ . "MS:1000205"^^ . "selected ion monitoring"^^ . _:genid278 . _:genid278 . _:genid278 . _:genid278 "The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum."^^ . _:genid278 "PSI:MS"^^ . . . . "Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space."^^ . "SRM"^^ . "MS"^^ . "MRM"^^ . "Multiple Reaction Monitoring"^^ . "MS:1000206"^^ . "selected reaction monitoring"^^ . _:genid279 . _:genid279 . _:genid279 . _:genid279 "Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space."^^ . _:genid279 "PSI:MS"^^ . . _:genid280 . _:genid280 . _:genid280 . _:genid280 . _:genid281 . _:genid281 . _:genid281 . _:genid281 . "OBSOLETE An experimentally determined mass that is can be to determine a unique elemental formula. For ions less than 200 u, a measurement with 5 ppm accuracy is sufficient to determine the elemental composition."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000207"^^ . "This child of the former purgatory term ion attribute was made obsolete."^^ . "accurate mass"^^ . "true"^^ . _:genid282 . _:genid282 . _:genid282 . _:genid282 "OBSOLETE An experimentally determined mass that is can be to determine a unique elemental formula. For ions less than 200 u, a measurement with 5 ppm accuracy is sufficient to determine the elemental composition."^^ . _:genid282 "PSI:MS"^^ . _:genid283 . _:genid283 . _:genid283 . _:genid283 "value-type:xsd:float"^^ . _:genid283 "The allowed value-type for this CV term."^^ . . _:genid284 . _:genid284 . _:genid284 . _:genid284 . _:genid285 . _:genid285 . _:genid285 . _:genid285 . "OBSOLETE The mass of an ion or molecule calculated using the average mass of each element weighted for its natural isotopic abundance."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000208"^^ . "This child of the former purgatory term ion attribute was made obsolete."^^ . "average mass"^^ . "true"^^ . _:genid286 . _:genid286 . _:genid286 . _:genid286 "OBSOLETE The mass of an ion or molecule calculated using the average mass of each element weighted for its natural isotopic abundance."^^ . _:genid286 "PSI:MS"^^ . _:genid287 . _:genid287 . _:genid287 . _:genid287 "value-type:xsd:float"^^ . _:genid287 "The allowed value-type for this CV term."^^ . . _:genid288 . _:genid288 . _:genid288 . _:genid288 . _:genid289 . _:genid289 . _:genid289 . _:genid289 . "OBSOLETE The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended."^^ . "value-type:xsd:float"^^ . "AE"^^ . "MS"^^ . "MS:1000209"^^ . "This child of the former purgatory term ion attribute was made obsolete."^^ . "appearance energy"^^ . "true"^^ . _:genid290 . _:genid290 . _:genid290 . _:genid290 "OBSOLETE The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended."^^ . _:genid290 "PSI:MS"^^ . _:genid291 . _:genid291 . _:genid291 . _:genid291 "value-type:xsd:float"^^ . _:genid291 "The allowed value-type for this CV term."^^ . . . "The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures."^^ . "BP"^^ . "MS"^^ . "MS:1000210"^^ . "base peak"^^ . _:genid292 . _:genid292 . _:genid292 . _:genid292 "The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures."^^ . _:genid292 "PSI:MS"^^ . . _:genid293 . _:genid293 . _:genid293 . _:genid293 . "OBSOLETE The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1000211"^^ . "OBSOLETE charge number"^^ . "true"^^ . _:genid294 . _:genid294 . _:genid294 . _:genid294 "OBSOLETE The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state."^^ . _:genid294 "PSI:MS"^^ . _:genid295 . _:genid295 . _:genid295 . _:genid295 "value-type:xsd:int"^^ . _:genid295 "The allowed value-type for this CV term."^^ . . "OBSOLETE A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg."^^ . "MS"^^ . "MS:1000212"^^ . "This term was made obsolete because it was redundant with the Unit Ontology term dalton (UO:0000221)."^^ . "dalton"^^ . "true"^^ . _:genid296 . _:genid296 . _:genid296 . _:genid296 "OBSOLETE A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg."^^ . _:genid296 "PSI:MS"^^ . . _:genid297 . _:genid297 . _:genid297 . _:genid297 . "OBSOLETE The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy."^^ . "value-type:xsd:float"^^ . "EA"^^ . "MS"^^ . "MS:1000213"^^ . "This child of the former purgatory term ion attribute was made obsolete."^^ . "electron affinity"^^ . "true"^^ . _:genid298 . _:genid298 . _:genid298 . _:genid298 "OBSOLETE The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy."^^ . _:genid298 "PSI:MS"^^ . _:genid299 . _:genid299 . _:genid299 . _:genid299 "value-type:xsd:float"^^ . _:genid299 "The allowed value-type for this CV term."^^ . . "OBSOLETE The potential difference through which electrons are accelerated before they are used to bring about electron ionization."^^ . "MS"^^ . "MS:1000214"^^ . "This former purgatory term was made obsolete."^^ . "electron energy obsolete"^^ . "true"^^ . _:genid300 . _:genid300 . _:genid300 . _:genid300 "OBSOLETE The potential difference through which electrons are accelerated before they are used to bring about electron ionization."^^ . _:genid300 "PSI:MS"^^ . . _:genid301 . _:genid301 . _:genid301 . _:genid301 . _:genid302 . _:genid302 . _:genid302 . _:genid302 . "OBSOLETE The calculated mass of an ion or molecule containing a single isotope of each atom."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000215"^^ . "This child of the former purgatory term ion attribute was made obsolete."^^ . "exact mass"^^ . "true"^^ . _:genid303 . _:genid303 . _:genid303 . _:genid303 "OBSOLETE The calculated mass of an ion or molecule containing a single isotope of each atom."^^ . _:genid303 "PSI:MS"^^ . _:genid304 . _:genid304 . _:genid304 . _:genid304 "value-type:xsd:float"^^ . _:genid304 "The allowed value-type for this CV term."^^ . . . "A section of a mass spectrometer in which there are no electric or magnetic fields."^^ . "FFR"^^ . "MS"^^ . "MS:1000216"^^ . "field-free region"^^ . _:genid305 . _:genid305 . _:genid305 . _:genid305 "A section of a mass spectrometer in which there are no electric or magnetic fields."^^ . _:genid305 "PSI:MS"^^ . . "OBSOLETE A measure of the probability that a given ionization process will occur when an atom or molecule interacts with a photon, electron, atom or molecule."^^ . "MS"^^ . "MS:1000217"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "ionization cross section"^^ . "true"^^ . _:genid306 . _:genid306 . _:genid306 . _:genid306 "OBSOLETE A measure of the probability that a given ionization process will occur when an atom or molecule interacts with a photon, electron, atom or molecule."^^ . _:genid306 "PSI:MS"^^ . . _:genid307 . _:genid307 . _:genid307 . _:genid307 . "OBSOLETE The ratio of the number of ions formed to the number of electrons, molecules or photons used."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000218"^^ . "This term was made obsolete because it was replaced by ionization efficiency (MS:1000392)."^^ . "ionization efficiency"^^ . "true"^^ . _:genid308 . _:genid308 . _:genid308 . _:genid308 "OBSOLETE The ratio of the number of ions formed to the number of electrons, molecules or photons used."^^ . _:genid308 "PSI:MS"^^ . _:genid309 . _:genid309 . _:genid309 . _:genid309 "value-type:xsd:float"^^ . _:genid309 "The allowed value-type for this CV term."^^ . . _:genid310 . _:genid310 . _:genid310 . _:genid310 . _:genid311 . _:genid311 . _:genid311 . _:genid311 . "OBSOLETE The minimum energy required to remove an electron from an atom or molecule to produce a positive ion."^^ . "value-type:xsd:float"^^ . "IE"^^ . "MS"^^ . "MS:1000219"^^ . "This child of the former purgatory term ion attribute was made obsolete."^^ . "ionization energy"^^ . "true"^^ . _:genid312 . _:genid312 . _:genid312 . _:genid312 "OBSOLETE The minimum energy required to remove an electron from an atom or molecule to produce a positive ion."^^ . _:genid312 "PSI:MS"^^ . _:genid313 . _:genid313 . _:genid313 . _:genid313 "value-type:xsd:float"^^ . _:genid313 "The allowed value-type for this CV term."^^ . . "OBSOLETE A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard."^^ . "IDMS"^^ . "MS"^^ . "MS:1000220"^^ . "This child of the former purgatory term mass spectrometry was made obsolete."^^ . "isotope dilution mass spectrometry"^^ . "true"^^ . _:genid314 . _:genid314 . _:genid314 . _:genid314 "OBSOLETE A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard."^^ . _:genid314 "PSI:MS"^^ . . . "The deflection of charged particles in a magnetic field due to a force equal to qvxB where q is the particle charge, v its velocity and B the magnetic field. Magnetic deflection of an ion beam is used for m/z separation in a magnetic sector mass spectrometer."^^ . "MS"^^ . "MS:1000221"^^ . "magnetic deflection"^^ . _:genid315 . _:genid315 . _:genid315 . _:genid315 "The deflection of charged particles in a magnetic field due to a force equal to qvxB where q is the particle charge, v its velocity and B the magnetic field. Magnetic deflection of an ion beam is used for m/z separation in a magnetic sector mass spectrometer."^^ . _:genid315 "PSI:MS"^^ . . _:genid316 . _:genid316 . _:genid316 . _:genid316 . _:genid317 . _:genid317 . _:genid317 . _:genid317 . "OBSOLETE The difference between the monoisotopic and nominal mass of a molecule or atom."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000222"^^ . "This child of the former purgatory term ion attribute was made obsolete."^^ . "mass defect"^^ . "true"^^ . _:genid318 . _:genid318 . _:genid318 . _:genid318 "OBSOLETE The difference between the monoisotopic and nominal mass of a molecule or atom."^^ . _:genid318 "PSI:MS"^^ . _:genid319 . _:genid319 . _:genid319 . _:genid319 "value-type:xsd:float"^^ . _:genid319 "The allowed value-type for this CV term."^^ . . _:genid320 . _:genid320 . _:genid320 . _:genid320 . "OBSOLETE The sum of the protons and neutrons in an atom, molecule or ion."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1000223"^^ . "This child of the former purgatory term ion attribute was made obsolete."^^ . "mass number"^^ . "true"^^ . _:genid321 . _:genid321 . _:genid321 . _:genid321 "OBSOLETE The sum of the protons and neutrons in an atom, molecule or ion."^^ . _:genid321 "PSI:MS"^^ . _:genid322 . _:genid322 . _:genid322 . _:genid322 "value-type:xsd:int"^^ . _:genid322 "The allowed value-type for this CV term."^^ . . . _:genid323 . _:genid323 . _:genid323 . _:genid323 . _:genid324 . _:genid324 . _:genid324 . _:genid324 . "Mass of a molecule measured in unified atomic mass units (u or Da)."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000224"^^ . "molecular mass"^^ . _:genid325 . _:genid325 . _:genid325 . _:genid325 "Mass of a molecule measured in unified atomic mass units (u or Da)."^^ . _:genid325 "https://en.wikipedia.org/wiki/Molecular_mass"^^ . _:genid326 . _:genid326 . _:genid326 . _:genid326 "value-type:xsd:float"^^ . _:genid326 "The allowed value-type for this CV term."^^ . . _:genid327 . _:genid327 . _:genid327 . _:genid327 . _:genid328 . _:genid328 . _:genid328 . _:genid328 . "OBSOLETE The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000225"^^ . "This child of the former purgatory term ion attribute was made obsolete."^^ . "monoisotopic mass"^^ . "true"^^ . _:genid329 . _:genid329 . _:genid329 . _:genid329 "OBSOLETE The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element."^^ . _:genid329 "PSI:MS"^^ . _:genid330 . _:genid330 . _:genid330 . _:genid330 "value-type:xsd:float"^^ . _:genid330 "The allowed value-type for this CV term."^^ . . "OBSOLETE A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam."^^ . "MBMS"^^ . "MS"^^ . "MS:1000226"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "molecular beam mass spectrometry"^^ . "true"^^ . _:genid331 . _:genid331 . _:genid331 . _:genid331 "OBSOLETE A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam."^^ . _:genid331 "PSI:MS"^^ . . . "Photoionization of an atom or molecule in which in two or more photons are absorbed."^^ . "MPI"^^ . "MS"^^ . "MS:1000227"^^ . "multiphoton ionization"^^ . _:genid332 . _:genid332 . _:genid332 . _:genid332 "Photoionization of an atom or molecule in which in two or more photons are absorbed."^^ . _:genid332 "PSI:MS"^^ . . "OBSOLETE An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nominal mass if it contains an odd number of nitrogen atoms."^^ . "MS"^^ . "MS:1000228"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "nitrogen rule"^^ . "true"^^ . _:genid333 . _:genid333 . _:genid333 . _:genid333 "OBSOLETE An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nominal mass if it contains an odd number of nitrogen atoms."^^ . _:genid333 "PSI:MS"^^ . . _:genid334 . _:genid334 . _:genid334 . _:genid334 . _:genid335 . _:genid335 . _:genid335 . _:genid335 . "OBSOLETE The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element rounded to the nearest integer value."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000229"^^ . "This child of the former purgatory term ion attribute was made obsolete."^^ . "nominal mass"^^ . "true"^^ . _:genid336 . _:genid336 . _:genid336 . _:genid336 "OBSOLETE The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element rounded to the nearest integer value."^^ . _:genid336 "PSI:MS"^^ . _:genid337 . _:genid337 . _:genid337 . _:genid337 "value-type:xsd:float"^^ . _:genid337 "The allowed value-type for this CV term."^^ . . "OBSOLETE Odd-electron ions may dissociate to form either odd or even-electron ions, whereas even-electron ions generally form even-electron fragment ions."^^ . "MS"^^ . "MS:1000230"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "odd-electron rule"^^ . "true"^^ . _:genid338 . _:genid338 . _:genid338 . _:genid338 "OBSOLETE Odd-electron ions may dissociate to form either odd or even-electron ions, whereas even-electron ions generally form even-electron fragment ions."^^ . _:genid338 "PSI:MS"^^ . . _:genid339 . _:genid339 . _:genid339 . _:genid339 . "A localized region of relatively large ion signal in a mass spectrum. Although peaks are often associated with particular ions, the terms peak and ion should not be used interchangeably."^^ . "MS"^^ . "MS:1000231"^^ . "peak"^^ . _:genid340 . _:genid340 . _:genid340 . _:genid340 "A localized region of relatively large ion signal in a mass spectrum. Although peaks are often associated with particular ions, the terms peak and ion should not be used interchangeably."^^ . _:genid340 "PSI:MS"^^ . . "OBSOLETE The height or area of a peak in a mass spectrum."^^ . "MS"^^ . "MS:1000232"^^ . "This term was made obsolete because it was replaced by base peak intensity (MS:1000505)."^^ . "peak intensity"^^ . "true"^^ . _:genid341 . _:genid341 . _:genid341 . _:genid341 "OBSOLETE The height or area of a peak in a mass spectrum."^^ . _:genid341 "PSI:MS"^^ . . _:genid342 . _:genid342 . _:genid342 . _:genid342 . "OBSOLETE The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states."^^ . "value-type:xsd:float"^^ . "PA"^^ . "MS"^^ . "MS:1000233"^^ . "This child of the former purgatory term ion attribute was made obsolete."^^ . "proton affinity"^^ . "true"^^ . _:genid343 . _:genid343 . _:genid343 . _:genid343 "OBSOLETE The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states."^^ . _:genid343 "PSI:MS"^^ . _:genid344 . _:genid344 . _:genid344 . _:genid344 "value-type:xsd:float"^^ . _:genid344 "The allowed value-type for this CV term."^^ . _:genid345 . _:genid345 . _:genid345 . _:genid345 "PA"^^ . _:genid345 "PSI:MS"^^ . . _:genid346 . _:genid346 . _:genid346 . _:genid346 . "OBSOLETE In a mass spectrum, the observed mass divided by the difference between two masses that can be separated. The method by which delta m was obtained and the mass at which the measurement was made should be reported."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000234"^^ . "This term was made obsolete because it was replaced by mass resolving power (MS:1000800)."^^ . "mass resolving power"^^ . "true"^^ . _:genid347 . _:genid347 . _:genid347 . _:genid347 "OBSOLETE In a mass spectrum, the observed mass divided by the difference between two masses that can be separated. The method by which delta m was obtained and the mass at which the measurement was made should be reported."^^ . _:genid347 "PSI:MS"^^ . _:genid348 . _:genid348 . _:genid348 . _:genid348 "value-type:xsd:float"^^ . _:genid348 "The allowed value-type for this CV term."^^ . . . "Representation of the total ion current detected in each of a series of mass spectra versus time."^^ . "TIC chromatogram"^^ . "MS"^^ . "MS:1000235"^^ . "total ion current chromatogram"^^ . _:genid349 . _:genid349 . _:genid349 . _:genid349 "Representation of the total ion current detected in each of a series of mass spectra versus time."^^ . _:genid349 "PSI:MS"^^ . . . _:genid350 . _:genid350 . _:genid350 . _:genid350 . "The ratio of the number of ions leaving a region of a mass spectrometer to the number entering that region."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000236"^^ . "transmission"^^ . _:genid351 . _:genid351 . _:genid351 . _:genid351 "The ratio of the number of ions leaving a region of a mass spectrometer to the number entering that region."^^ . _:genid351 "PSI:MS"^^ . _:genid352 . _:genid352 . _:genid352 . _:genid352 "value-type:xsd:float"^^ . _:genid352 "The allowed value-type for this CV term."^^ . . "OBSOLETE A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg."^^ . "u"^^ . "MS"^^ . "MS:1000237"^^ . "This term was made obsolete because it was redundant with Unit Ontology dalton (UO:0000221)."^^ . "unified atomic mass unit"^^ . "true"^^ . _:genid353 . _:genid353 . _:genid353 . _:genid353 "OBSOLETE A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg."^^ . _:genid353 "PSI:MS"^^ . . "OBSOLETE A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy."^^ . "AMS"^^ . "MS"^^ . "MS:1000238"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "accelerator mass spectrometry"^^ . "true"^^ . _:genid354 . _:genid354 . _:genid354 . _:genid354 "OBSOLETE A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy."^^ . _:genid354 "PSI:MS"^^ . . . "Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer."^^ . "AP MALDI"^^ . "MS"^^ . "MS:1000239"^^ . "atmospheric pressure matrix-assisted laser desorption ionization"^^ . _:genid355 . _:genid355 . _:genid355 . _:genid355 "Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer."^^ . _:genid355 "PSI:MS"^^ . . . "Any ionization process in which ions are formed in the gas phase at atmospheric pressure."^^ . "API"^^ . "MS"^^ . "MS:1000240"^^ . "atmospheric pressure ionization"^^ . _:genid356 . _:genid356 . _:genid356 . _:genid356 "Any ionization process in which ions are formed in the gas phase at atmospheric pressure."^^ . _:genid356 "PSI:MS"^^ . . "OBSOLETE Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization."^^ . "APPI"^^ . "MS"^^ . "MS:1000241"^^ . "This term was made obsolete because it was replaced by atmospheric pressure photoionization (MS:1000382)."^^ . "Atmostpheric Pressure Photoionization"^^ . "true"^^ . _:genid357 . _:genid357 . _:genid357 . _:genid357 "OBSOLETE Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization."^^ . _:genid357 "PSI:MS"^^ . . . "A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation."^^ . "BIRD"^^ . "MS"^^ . "MS:1000242"^^ . "blackbody infrared radiative dissociation"^^ . _:genid358 . _:genid358 . _:genid358 . _:genid358 "A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation."^^ . _:genid358 "PSI:MS"^^ . . "OBSOLETE A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site."^^ . "CRF"^^ . "MS"^^ . "MS:1000243"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "charge-remote fragmentation"^^ . "true"^^ . _:genid359 . _:genid359 . _:genid359 . _:genid359 "OBSOLETE A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site."^^ . _:genid359 "PSI:MS"^^ . . "OBSOLETE MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored."^^ . "CRM"^^ . "MS"^^ . "MS:1000244"^^ . "This former purgatory term was made obsolete."^^ . "consecutive reaction monitoring"^^ . "true"^^ . _:genid360 . _:genid360 . _:genid360 . _:genid360 "OBSOLETE MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored."^^ . _:genid360 "PSI:MS"^^ . . . "The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion."^^ . "CS"^^ . "MS"^^ . "MS:1000245"^^ . "charge stripping"^^ . _:genid361 . _:genid361 . _:genid361 . _:genid361 "The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion."^^ . _:genid361 "PSI:MS"^^ . . . "The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer."^^ . "DE"^^ . "MS"^^ . "MS:1000246"^^ . "delayed extraction"^^ . _:genid362 . _:genid362 . _:genid362 . _:genid362 "The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer."^^ . _:genid362 "PSI:MS"^^ . . . "The formation of ions from a solid or liquid material after the rapid vaporization of that sample."^^ . "DI"^^ . "MS"^^ . "MS:1000247"^^ . "desorption ionization"^^ . _:genid363 . _:genid363 . _:genid363 . _:genid363 "The formation of ions from a solid or liquid material after the rapid vaporization of that sample."^^ . _:genid363 "PSI:MS"^^ . . . "A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization."^^ . "DIP"^^ . "MS"^^ . "MS:1000248"^^ . "direct insertion probe"^^ . _:genid364 . _:genid364 . _:genid364 . _:genid364 "A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization."^^ . _:genid364 "PSI:MS"^^ . . . "The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization."^^ . "DLI"^^ . "MS"^^ . "MS:1000249"^^ . "direct liquid introduction"^^ . _:genid365 . _:genid365 . _:genid365 . _:genid365 "The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization."^^ . _:genid365 "PSI:MS"^^ . . . "A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments."^^ . "ECD"^^ . "MS"^^ . "MS:1000250"^^ . "electron capture dissociation"^^ . _:genid366 . _:genid366 . _:genid366 . _:genid366 "A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments."^^ . _:genid366 "PSI:MS"^^ . . "OBSOLETE An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state."^^ . "EE"^^ . "MS"^^ . "MS:1000251"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "even-electron ion"^^ . "true"^^ . _:genid367 . _:genid367 . _:genid367 . _:genid367 "OBSOLETE An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state."^^ . _:genid367 "PSI:MS"^^ . . "OBSOLETE The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion."^^ . "EIEIO"^^ . "MS"^^ . "MS:1000252"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "electron-induced excitation in organics"^^ . "true"^^ . _:genid368 . _:genid368 . _:genid368 . _:genid368 "OBSOLETE The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion."^^ . _:genid368 "PSI:MS"^^ . . . "A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons."^^ . "EM"^^ . "MS"^^ . "MS:1000253"^^ . "electron multiplier"^^ . _:genid369 . _:genid369 . _:genid369 . _:genid369 "A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons."^^ . _:genid369 "PSI:MS"^^ . . . "A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time."^^ . "ESA"^^ . "MS"^^ . "MS:1000254"^^ . "electrostatic energy analyzer"^^ . _:genid370 . _:genid370 . _:genid370 . _:genid370 "A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time."^^ . _:genid370 "PSI:MS"^^ . . . "An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa."^^ . "FA"^^ . "MS"^^ . "MS:1000255"^^ . "flowing afterglow"^^ . _:genid371 . _:genid371 . _:genid371 . _:genid371 "An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa."^^ . _:genid371 "PSI:MS"^^ . . "OBSOLETE The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion."^^ . "FAIMS"^^ . "MS"^^ . "MS:1000256"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "high-field asymmetric waveform ion mobility spectrometry"^^ . "true"^^ . _:genid372 . _:genid372 . _:genid372 . _:genid372 "OBSOLETE The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion."^^ . _:genid372 "PSI:MS"^^ . . . "The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization."^^ . "FD"^^ . "MS"^^ . "MS:1000257"^^ . "field desorption"^^ . _:genid373 . _:genid373 . _:genid373 . _:genid373 "The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization."^^ . _:genid373 "PSI:MS"^^ . . . "The removal of electrons from any species by interaction with a high electric field."^^ . "FI"^^ . "MS"^^ . "MS:1000258"^^ . "field ionization"^^ . _:genid374 . _:genid374 . _:genid374 . _:genid374 "The removal of electrons from any species by interaction with a high electric field."^^ . _:genid374 "PSI:MS"^^ . . . "The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas."^^ . "GD-MS"^^ . "MS"^^ . "MS:1000259"^^ . "glow discharge ionization"^^ . _:genid375 . _:genid375 . _:genid375 . _:genid375 "The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas."^^ . _:genid375 "PSI:MS"^^ . . "OBSOLETE A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge."^^ . "IKES"^^ . "MS"^^ . "MS:1000260"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "ion kinetic energy spectrometry"^^ . "true"^^ . _:genid376 . _:genid376 . _:genid376 . _:genid376 "OBSOLETE A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge."^^ . _:genid376 "PSI:MS"^^ . . "OBSOLETE The separation of ions according to their velocity through a buffer gas under the influence of an electric field."^^ . "IMS"^^ . "MS"^^ . "MS:1000261"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "ion mobility spectrometry"^^ . "true"^^ . _:genid377 . _:genid377 . _:genid377 . _:genid377 "OBSOLETE The separation of ions according to their velocity through a buffer gas under the influence of an electric field."^^ . _:genid377 "PSI:MS"^^ . . . "Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons."^^ . "IRMPD"^^ . "MS"^^ . "MS:1000262"^^ . "infrared multiphoton dissociation"^^ . _:genid378 . _:genid378 . _:genid378 . _:genid378 "Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons."^^ . _:genid378 "PSI:MS"^^ . . "OBSOLETE The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer."^^ . "IRMS"^^ . "MS"^^ . "MS:1000263"^^ . "This child of the former purgatory term mass spectrometry was made obsolete."^^ . "isotope ratio mass spectrometry"^^ . "true"^^ . _:genid379 . _:genid379 . _:genid379 . _:genid379 "OBSOLETE The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer."^^ . _:genid379 "PSI:MS"^^ . . . "A device for spatially confining ions using electric and magnetic fields alone or in combination."^^ . "IT"^^ . "MS"^^ . "MS:1000264"^^ . "ion trap"^^ . _:genid380 . _:genid380 . _:genid380 . _:genid380 "A device for spatially confining ions using electric and magnetic fields alone or in combination."^^ . _:genid380 "PSI:MS"^^ . . "OBSOLETE Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction."^^ . "KERD"^^ . "MS"^^ . "MS:1000265"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "kinetic energy release distribution"^^ . "true"^^ . _:genid381 . _:genid381 . _:genid381 . _:genid381 "OBSOLETE Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction."^^ . _:genid381 "PSI:MS"^^ . . "OBSOLETE The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules."^^ . "MS:1000393"^^ . "LD"^^ . "Laser Ionization MERGE"^^ . "MS"^^ . "MS:1000266"^^ . "This term was made obsolete because it was replaced by laser desorption ionization (MS:1000393)."^^ . "Laser Desorption"^^ . "true"^^ . _:genid382 . _:genid382 . _:genid382 . _:genid382 "OBSOLETE The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules."^^ . _:genid382 "PSI:MS"^^ . . "OBSOLETE Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process."^^ . "MIKES"^^ . "MS"^^ . "MS:1000267"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "mass analyzed ion kinetic energy spectrometry"^^ . "true"^^ . _:genid383 . _:genid383 . _:genid383 . _:genid383 "OBSOLETE Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process."^^ . _:genid383 "PSI:MS"^^ . . "OBSOLETE The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments."^^ . "MS"^^ . "MS"^^ . "MS:1000268"^^ . "This former purgatory term was made obsolete."^^ . "mass spectrometry"^^ . "true"^^ . _:genid384 . _:genid384 . _:genid384 . _:genid384 "OBSOLETE The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments."^^ . _:genid384 "PSI:MS"^^ . . "OBSOLETE The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions."^^ . "MS/MS"^^ . "MS"^^ . "MS:1000269"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "mass spectrometry/mass spectrometry"^^ . "true"^^ . _:genid385 . _:genid385 . _:genid385 . _:genid385 "OBSOLETE The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions."^^ . _:genid385 "PSI:MS"^^ . . "OBSOLETE Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions."^^ . "MSn"^^ . "MS"^^ . "MS:1000270"^^ . "This child of the former purgatory term m/z Separation Method was made obsolete."^^ . "multiple stage mass spectrometry"^^ . "true"^^ . _:genid386 . _:genid386 . _:genid386 . _:genid386 "OBSOLETE Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions."^^ . _:genid386 "PSI:MS"^^ . . . "Chemical ionization that results in the formation of negative ions."^^ . "NICI"^^ . "MS"^^ . "MS:1000271"^^ . "Negative Ion chemical ionization"^^ . _:genid387 . _:genid387 . _:genid387 . _:genid387 "Chemical ionization that results in the formation of negative ions."^^ . _:genid387 "PSI:MS"^^ . . . "With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species."^^ . "NRMS"^^ . "MS"^^ . "MS:1000272"^^ . "neutralization reionization mass spectrometry"^^ . _:genid388 . _:genid388 . _:genid388 . _:genid388 "With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species."^^ . _:genid388 "PSI:MS"^^ . . . "The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended."^^ . "PI"^^ . "MS"^^ . "MS:1000273"^^ . "photoionization"^^ . _:genid389 . _:genid389 . _:genid389 . _:genid389 "The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended."^^ . _:genid389 "PSI:MS"^^ . . . "A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source."^^ . "PyMS"^^ . "MS"^^ . "MS:1000274"^^ . "pyrolysis mass spectrometry"^^ . _:genid390 . _:genid390 . _:genid390 . _:genid390 "A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source."^^ . _:genid390 "PSI:MS"^^ . . . "A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation."^^ . "q"^^ . "MS"^^ . "MS:1000275"^^ . "collision quadrupole"^^ . _:genid391 . _:genid391 . _:genid391 . _:genid391 "A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation."^^ . _:genid391 "PSI:MS"^^ . . . "Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species."^^ . "REMPI"^^ . "MS"^^ . "MS:1000276"^^ . "resonance enhanced multiphoton ionization"^^ . _:genid392 . _:genid392 . _:genid392 . _:genid392 "Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species."^^ . _:genid392 "PSI:MS"^^ . . "OBSOLETE A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber."^^ . "RGA"^^ . "MS"^^ . "MS:1000277"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "residual gas analyzer"^^ . "true"^^ . _:genid393 . _:genid393 . _:genid393 . _:genid393 "OBSOLETE A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber."^^ . _:genid393 "PSI:MS"^^ . . . "The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization."^^ . "SELDI"^^ . "MS"^^ . "MS:1000278"^^ . "surface enhanced laser desorption ionization"^^ . _:genid394 . _:genid394 . _:genid394 . _:genid394 "The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization."^^ . _:genid394 "PSI:MS"^^ . . . "Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface."^^ . "SEND"^^ . "MS"^^ . "MS:1000279"^^ . "surface enhanced neat desorption"^^ . _:genid395 . _:genid395 . _:genid395 . _:genid395 "Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface."^^ . _:genid395 "PSI:MS"^^ . . "OBSOLETE The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature."^^ . "SI"^^ . "MS"^^ . "MS:1000280"^^ . "This term was made obsolete because it was replaced by surface ionization (MS:1000406)."^^ . "suface ionization"^^ . "true"^^ . _:genid396 . _:genid396 . _:genid396 . _:genid396 "OBSOLETE The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature."^^ . _:genid396 "PSI:MS"^^ . . . "A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions."^^ . "SIFT"^^ . "MS"^^ . "MS:1000281"^^ . "selected ion flow tube"^^ . _:genid397 . _:genid397 . _:genid397 . _:genid397 "A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions."^^ . _:genid397 "PSI:MS"^^ . . . "A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time."^^ . "SORI"^^ . "MS"^^ . "MS:1000282"^^ . "sustained off-resonance irradiation"^^ . _:genid398 . _:genid398 . _:genid398 . _:genid398 "A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time."^^ . _:genid398 "PSI:MS"^^ . . "OBSOLETE Mass spectrometry using spark ionization."^^ . "SSMS"^^ . "MS"^^ . "MS:1000283"^^ . "This term was made obsolete because it was replaced by spark ionization (MS:1000404)."^^ . "Spark Source Mass Spectrometry"^^ . "true"^^ . _:genid399 . _:genid399 . _:genid399 . _:genid399 "OBSOLETE Mass spectrometry using spark ionization."^^ . _:genid399 "PSI:MS"^^ . . . "A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS2 experiments."^^ . "SWIFT"^^ . "MS"^^ . "MS:1000284"^^ . "stored waveform inverse fourier transform"^^ . _:genid400 . _:genid400 . _:genid400 . _:genid400 "A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS2 experiments."^^ . _:genid400 "PSI:MS"^^ . . . _:genid401 . _:genid401 . _:genid401 . _:genid401 . "The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum."^^ . "value-type:xsd:float"^^ . "TIC"^^ . "MS"^^ . "MS:1000285"^^ . "total ion current"^^ . _:genid402 . _:genid402 . _:genid402 . _:genid402 "The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum."^^ . _:genid402 "PSI:MS"^^ . _:genid403 . _:genid403 . _:genid403 . _:genid403 "value-type:xsd:float"^^ . _:genid403 "The allowed value-type for this CV term."^^ . . . "Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse."^^ . "TLF"^^ . "MS"^^ . "MS:1000286"^^ . "time lag focusing"^^ . _:genid404 . _:genid404 . _:genid404 . _:genid404 "Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse."^^ . _:genid404 "PSI:MS"^^ . . "OBSOLETE An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy."^^ . "TOF-MS"^^ . "MS"^^ . "MS:1000287"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "time-of-flight mass spectrometer"^^ . "true"^^ . _:genid405 . _:genid405 . _:genid405 . _:genid405 "OBSOLETE An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy."^^ . _:genid405 "PSI:MS"^^ . . . "A device that uses an oscillating electric field and magnetic field to accelerate charged particles."^^ . "MS"^^ . "MS:1000288"^^ . "cyclotron"^^ . _:genid406 . _:genid406 . _:genid406 . _:genid406 "A device that uses an oscillating electric field and magnetic field to accelerate charged particles."^^ . _:genid406 "PSI:MS"^^ . . "OBSOLETE A mass spectrometer that uses a magnetic sector for m/z focusing and an electric sector for energy focusing of an ion beam."^^ . "MS"^^ . "MS:1000289"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "double-focusing mass spectrometer"^^ . "true"^^ . _:genid407 . _:genid407 . _:genid407 . _:genid407 "OBSOLETE A mass spectrometer that uses a magnetic sector for m/z focusing and an electric sector for energy focusing of an ion beam."^^ . _:genid407 "PSI:MS"^^ . . "OBSOLETE A mass spectrometer that combines m/z analyzers of different types to perform tandem mass spectrometry."^^ . "MS"^^ . "MS:1000290"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "hybrid mass spectrometer"^^ . "true"^^ . _:genid408 . _:genid408 . _:genid408 . _:genid408 "OBSOLETE A mass spectrometer that combines m/z analyzers of different types to perform tandem mass spectrometry."^^ . _:genid408 "PSI:MS"^^ . . . "A two dimensional Paul ion trap in which ions are confined in the axial dimension by means of an electric field at the ends of the trap."^^ . "MS"^^ . "MS:1000291"^^ . "linear ion trap"^^ . _:genid409 . _:genid409 . _:genid409 . _:genid409 "A two dimensional Paul ion trap in which ions are confined in the axial dimension by means of an electric field at the ends of the trap."^^ . _:genid409 "PSI:MS"^^ . . "OBSOLETE An instrument that separates a beam of ions according to their mass-to-charge ratio in which the ions are directed onto a focal plane detector such as a photographic plate."^^ . "MS"^^ . "MS:1000292"^^ . "This former purgatory term was made obsolete."^^ . "mass spectrograph obsolete"^^ . "true"^^ . _:genid410 . _:genid410 . _:genid410 . _:genid410 "OBSOLETE An instrument that separates a beam of ions according to their mass-to-charge ratio in which the ions are directed onto a focal plane detector such as a photographic plate."^^ . _:genid410 "PSI:MS"^^ . . "OBSOLETE An instrument that measures the mass-to-charge ratio and relative abundances of ions."^^ . "MS"^^ . "MS:1000293"^^ . "This former purgatory term was made obsolete."^^ . "mass spectrometer"^^ . "true"^^ . _:genid411 . _:genid411 . _:genid411 . _:genid411 "OBSOLETE An instrument that measures the mass-to-charge ratio and relative abundances of ions."^^ . _:genid411 "PSI:MS"^^ . . . . "A plot of the relative abundance of a beam or other collection of ions as a function of the mass-to-charge ratio (m/z)."^^ . "MS"^^ . "MS:1000294"^^ . "mass spectrum"^^ . _:genid412 . _:genid412 . _:genid412 . _:genid412 "A plot of the relative abundance of a beam or other collection of ions as a function of the mass-to-charge ratio (m/z)."^^ . _:genid412 "PSI:MS"^^ . . "OBSOLETE An arrangement for a double-focusing mass spectrometer in which a deflection of ?/(4 ?(2)) radians in a radial electric field is followed by a magnetic deflection of ?/2 radians."^^ . "MS"^^ . "MS:1000295"^^ . "This former purgatory term was made obsolete."^^ . "mattauch-herzog geometry"^^ . "true"^^ . _:genid413 . _:genid413 . _:genid413 . _:genid413 "OBSOLETE An arrangement for a double-focusing mass spectrometer in which a deflection of ?/(4 ?(2)) radians in a radial electric field is followed by a magnetic deflection of ?/2 radians."^^ . _:genid413 "PSI:MS"^^ . . "OBSOLETE An arrangement for a double-focusing mass spectrometer in which a deflection of ?/2 radians in a radial electric field analyzer is followed by a magnetic deflection of ?/3 radians."^^ . "MS"^^ . "MS:1000296"^^ . "This former purgatory term was made obsolete."^^ . "nier-johnson geometry"^^ . "true"^^ . _:genid414 . _:genid414 . _:genid414 . _:genid414 "OBSOLETE An arrangement for a double-focusing mass spectrometer in which a deflection of ?/2 radians in a radial electric field analyzer is followed by a magnetic deflection of ?/3 radians."^^ . _:genid414 "PSI:MS"^^ . . "OBSOLETE A device that permits the trapping of ions by means of an alternating current voltage. The ejection of ions with a m/z less than a prescribed value and retention of those with higher mass depends on the application of radio frequency voltages between a ring electrode and two end-cap electrodes to confine the ions in a circular path. The choice of these voltages determines the m/z below which ions are ejected."^^ . "MS"^^ . "quadrupole ion trap"^^ . "MS:1000297"^^ . "This term was made obsolete because it is redundant to quadrupole ion trap."^^ . "paul ion trap"^^ . "true"^^ . _:genid415 . _:genid415 . _:genid415 . _:genid415 "OBSOLETE A device that permits the trapping of ions by means of an alternating current voltage. The ejection of ions with a m/z less than a prescribed value and retention of those with higher mass depends on the application of radio frequency voltages between a ring electrode and two end-cap electrodes to confine the ions in a circular path. The choice of these voltages determines the m/z below which ions are ejected."^^ . _:genid415 "PSI:MS"^^ . . "OBSOLETE A mass spectrometer in which the ions of different m/z are separated by means of crossed electric and magnetic fields in such a way that the selected ions follow a prolate trochoidal path."^^ . "MS"^^ . "MS:1000298"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "prolate traochoidal mass spectrometer"^^ . "true"^^ . _:genid416 . _:genid416 . _:genid416 . _:genid416 "OBSOLETE A mass spectrometer in which the ions of different m/z are separated by means of crossed electric and magnetic fields in such a way that the selected ions follow a prolate trochoidal path."^^ . _:genid416 "PSI:MS"^^ . . "OBSOLETE An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap. If so then add a synonym to paul and obsolete this term."^^ . "MS"^^ . "MS:1000299"^^ . "This former purgatory term was made obsolete."^^ . "quistor"^^ . "true"^^ . _:genid417 . _:genid417 . _:genid417 . _:genid417 "OBSOLETE An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap. If so then add a synonym to paul and obsolete this term."^^ . _:genid417 "PSI:MS"^^ . . . "A time-of-flight mass spectrometer that uses a static electric field to reverse the direction of travel of the ions entering it. A reflectron improves mass resolution by assuring that ions of the same m/z but different kinetic energy arrive at the detector at the same time."^^ . "MS"^^ . "MS:1000300"^^ . "reflectron"^^ . _:genid418 . _:genid418 . _:genid418 . _:genid418 "A time-of-flight mass spectrometer that uses a static electric field to reverse the direction of travel of the ions entering it. A reflectron improves mass resolution by assuring that ions of the same m/z but different kinetic energy arrive at the detector at the same time."^^ . _:genid418 "PSI:MS"^^ . . "OBSOLETE A mass spectrometer consisting of one or more magnetic sectors for m/z selection in a beam of ions. Such instruments may also have one or more electric sectors for energy selection."^^ . "MS"^^ . "MS:1000301"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "sector mass spectrometer"^^ . "true"^^ . _:genid419 . _:genid419 . _:genid419 . _:genid419 "OBSOLETE A mass spectrometer consisting of one or more magnetic sectors for m/z selection in a beam of ions. Such instruments may also have one or more electric sectors for energy selection."^^ . _:genid419 "PSI:MS"^^ . . "OBSOLETE A mass spectrometer designed for mass spectrometry/mass spectrometry."^^ . "MS"^^ . "MS:1000302"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "tandem mass spectrometer"^^ . "true"^^ . _:genid420 . _:genid420 . _:genid420 . _:genid420 "OBSOLETE A mass spectrometer designed for mass spectrometry/mass spectrometry."^^ . _:genid420 "PSI:MS"^^ . . "OBSOLETE A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis."^^ . "MS"^^ . "MS:1000303"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "transmission quadrupole mass spectrometer"^^ . "true"^^ . _:genid421 . _:genid421 . _:genid421 . _:genid421 "OBSOLETE A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis."^^ . _:genid421 "PSI:MS"^^ . . . _:genid422 . _:genid422 . _:genid422 . _:genid422 . _:genid423 . _:genid423 . _:genid423 . _:genid423 . "The electrical potential used to impart kinetic energy to ions in a mass spectrometer."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000304"^^ . "accelerating voltage"^^ . _:genid424 . _:genid424 . _:genid424 . _:genid424 "The electrical potential used to impart kinetic energy to ions in a mass spectrometer."^^ . _:genid424 "PSI:MS"^^ . _:genid425 . _:genid425 . _:genid425 . _:genid425 "value-type:xsd:float"^^ . _:genid425 "The allowed value-type for this CV term."^^ . . "OBSOLETE The circular motion of a charged particle moving at velocity v in a magnetic field B that results from the force qvB."^^ . "MS"^^ . "MS:1000305"^^ . "This child of the former purgatory term m/z Separation Method was made obsolete."^^ . "cyclotron motion"^^ . "true"^^ . _:genid426 . _:genid426 . _:genid426 . _:genid426 "OBSOLETE The circular motion of a charged particle moving at velocity v in a magnetic field B that results from the force qvB."^^ . _:genid426 "PSI:MS"^^ . . "OBSOLETE A mass spectrometer in which m/z separation using one or more electric fields that vary with time."^^ . "MS"^^ . "MS:1000306"^^ . "This child of the former purgatory term mass spectrometer was made obsolete."^^ . "dynamic mass spectrometry"^^ . "true"^^ . _:genid427 . _:genid427 . _:genid427 . _:genid427 "OBSOLETE A mass spectrometer in which m/z separation using one or more electric fields that vary with time."^^ . _:genid427 "PSI:MS"^^ . . . "Three element charged particle lens in which the first and third elements are held at the same voltage. Such a lens produces focusing without changing the translational energy of the particle."^^ . "MS"^^ . "MS:1000307"^^ . "einzel lens"^^ . _:genid428 . _:genid428 . _:genid428 . _:genid428 "Three element charged particle lens in which the first and third elements are held at the same voltage. Such a lens produces focusing without changing the translational energy of the particle."^^ . _:genid428 "PSI:MS"^^ . . . _:genid429 . _:genid429 . _:genid429 . _:genid429 . _:genid430 . _:genid430 . _:genid430 . _:genid430 . "The magnitude of the force per unit charge at a given point in space."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000308"^^ . "electric field strength"^^ . _:genid431 . _:genid431 . _:genid431 . _:genid431 "The magnitude of the force per unit charge at a given point in space."^^ . _:genid431 "PSI:MS"^^ . _:genid432 . _:genid432 . _:genid432 . _:genid432 "value-type:xsd:float"^^ . _:genid432 "The allowed value-type for this CV term."^^ . . . "The region of a Mathieu stability diagram closest to the origin. Ions within this region can traverse the full length of a transmission quadrupole."^^ . "MS"^^ . "MS:1000309"^^ . "first stability region"^^ . _:genid433 . _:genid433 . _:genid433 . _:genid433 "The region of a Mathieu stability diagram closest to the origin. Ions within this region can traverse the full length of a transmission quadrupole."^^ . _:genid433 "PSI:MS"^^ . . . "The electric or magnetic field that extends from the edge of a sector, lens or other ion optics element."^^ . "MS"^^ . "MS:1000310"^^ . "fringing field"^^ . _:genid434 . _:genid434 . _:genid434 . _:genid434 "The electric or magnetic field that extends from the edge of a sector, lens or other ion optics element."^^ . _:genid434 "PSI:MS"^^ . . . "A device for measuring the kinetic energy of charged particles using a retarding field, time-of-flight, or the extent of deflection in an electric or magnetic field."^^ . "MS"^^ . "MS:1000311"^^ . "kinetic energy analyzer"^^ . _:genid435 . _:genid435 . _:genid435 . _:genid435 "A device for measuring the kinetic energy of charged particles using a retarding field, time-of-flight, or the extent of deflection in an electric or magnetic field."^^ . _:genid435 "PSI:MS"^^ . . "OBSOLETE The m/z value above which ions cannot be detected in a mass spectrometer."^^ . "MS"^^ . "MS:1000312"^^ . "This former purgatory term was made obsolete."^^ . "mass limit"^^ . "true"^^ . _:genid436 . _:genid436 . _:genid436 . _:genid436 "OBSOLETE The m/z value above which ions cannot be detected in a mass spectrometer."^^ . _:genid436 "PSI:MS"^^ . . "OBSOLETE The limit of m/z over which a mass spectrometer can detect ions."^^ . "MS"^^ . "MS:1000313"^^ . "This former purgatory term was made obsolete."^^ . "scan m/z range?"^^ . "true"^^ . _:genid437 . _:genid437 . _:genid437 . _:genid437 "OBSOLETE The limit of m/z over which a mass spectrometer can detect ions."^^ . _:genid437 "PSI:MS"^^ . . "OBSOLETE The use of mass selective instability to eject ions of selected m/z values from an ion trap."^^ . "MS"^^ . "MS:1000314"^^ . "This child of the former purgatory term m/z Separation Method was made obsolete."^^ . "mass selective axial ejection"^^ . "true"^^ . _:genid438 . _:genid438 . _:genid438 . _:genid438 "OBSOLETE The use of mass selective instability to eject ions of selected m/z values from an ion trap."^^ . _:genid438 "PSI:MS"^^ . . "OBSOLETE A method for selective ejection of ions according to their m/z value in an ion trap."^^ . "MS"^^ . "MS:1000315"^^ . "This child of the former purgatory term m/z Separation Method was made obsolete."^^ . "mass selective instability"^^ . "true"^^ . _:genid439 . _:genid439 . _:genid439 . _:genid439 "OBSOLETE A method for selective ejection of ions according to their m/z value in an ion trap."^^ . _:genid439 "PSI:MS"^^ . . "OBSOLETE A graphical representation expressed in terms of reduced coordinates that describes charged particle motion in a quadrupole mass filter or quadrupole ion trap mass spectrometer."^^ . "MS"^^ . "MS:1000316"^^ . "This child of the former purgatory term m/z Separation Method was made obsolete."^^ . "mathieu stability diagram"^^ . "true"^^ . _:genid440 . _:genid440 . _:genid440 . _:genid440 "OBSOLETE A graphical representation expressed in terms of reduced coordinates that describes charged particle motion in a quadrupole mass filter or quadrupole ion trap mass spectrometer."^^ . _:genid440 "PSI:MS"^^ . . "OBSOLETE The pulsed acceleration of ions perpendicular to their direction of travel into a time-of-flight mass spectrometer. Ions may be extracted from a directional ion source, drift tube or m/z separation stage."^^ . "MS"^^ . "MS:1000317"^^ . "This child of the former purgatory term m/z Separation Method was made obsolete."^^ . "orthogonal extraction"^^ . "true"^^ . _:genid441 . _:genid441 . _:genid441 . _:genid441 "OBSOLETE The pulsed acceleration of ions perpendicular to their direction of travel into a time-of-flight mass spectrometer. Ions may be extracted from a directional ion source, drift tube or m/z separation stage."^^ . _:genid441 "PSI:MS"^^ . . "OBSOLETE A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary radio frequency voltage that is applied to the end-cap electrodes. The voltage is tuned to the secular frequency of a particular ion to eject it."^^ . "MS"^^ . "MS:1000318"^^ . "This child of the former purgatory term m/z Separation Method was made obsolete."^^ . "resonance ion ejection"^^ . "true"^^ . _:genid442 . _:genid442 . _:genid442 . _:genid442 "OBSOLETE A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary radio frequency voltage that is applied to the end-cap electrodes. The voltage is tuned to the secular frequency of a particular ion to eject it."^^ . _:genid442 "PSI:MS"^^ . . . "The mutual repulsion of particles of like charge that limits the current in a charged-particle beam and causes beams or packets of charged particles to expand radially over time."^^ . "MS"^^ . "MS:1000319"^^ . "space charge effect"^^ . _:genid443 . _:genid443 . _:genid443 . _:genid443 "The mutual repulsion of particles of like charge that limits the current in a charged-particle beam and causes beams or packets of charged particles to expand radially over time."^^ . _:genid443 "PSI:MS"^^ . . . "An electric or magnetic field that does not change in time."^^ . "MS"^^ . "MS:1000320"^^ . "static field"^^ . _:genid444 . _:genid444 . _:genid444 . _:genid444 "An electric or magnetic field that does not change in time."^^ . _:genid444 "PSI:MS"^^ . . "OBSOLETE A mass spectrum obtained by setting the electric sector field E to twice the value required to transmit the main ion-beam thereby allowing ions with a kinetic energy-to-charge ratio twice that of the main ion-beam to be transmitted. Product ions resulting from partial charge transfer reactions such as m^2+ + N ? m^+ + N^+ that occur in a collision cell (containing a gas, N) located in a field-free region preceding a magnetic and electric sector combination are detected. When the magnetic sector field B is scanned, a mass spectrum of singly charged product ions of doubly charged precursor ions is obtained."^^ . "MS"^^ . "MS:1000321"^^ . "This child of the former purgatory term m/z Separation Method was made obsolete."^^ . "2E Mass Spectrum"^^ . "true"^^ . _:genid445 . _:genid445 . _:genid445 . _:genid445 "OBSOLETE A mass spectrum obtained by setting the electric sector field E to twice the value required to transmit the main ion-beam thereby allowing ions with a kinetic energy-to-charge ratio twice that of the main ion-beam to be transmitted. Product ions resulting from partial charge transfer reactions such as m^2+ + N ? m^+ + N^+ that occur in a collision cell (containing a gas, N) located in a field-free region preceding a magnetic and electric sector combination are detected. When the magnetic sector field B is scanned, a mass spectrum of singly charged product ions of doubly charged precursor ions is obtained."^^ . _:genid445 "PSI:MS"^^ . . . "The measurement of the relative abundance of ions that result from a charge inversion reaction as a function of m/z."^^ . "MS"^^ . "MS:1000322"^^ . "charge inversion mass spectrum"^^ . _:genid446 . _:genid446 . _:genid446 . _:genid446 "The measurement of the relative abundance of ions that result from a charge inversion reaction as a function of m/z."^^ . _:genid446 "PSI:MS"^^ . . "OBSOLETE Spectrum of all precursor ions that undergo a selected m/z decrement."^^ . "MS"^^ . "constant neutral mass loss scan"^^ . "fixed neutral fragment scan"^^ . "MS:1000323"^^ . "This former purgatory term was made obsolete."^^ . "constant neutral loss scan"^^ . "true"^^ . _:genid447 . _:genid447 . _:genid447 . _:genid447 "OBSOLETE Spectrum of all precursor ions that undergo a selected m/z decrement."^^ . _:genid447 "PSI:MS"^^ . . "OBSOLETE Spectrum of all precursor ions that undergo a selected m/z increment."^^ . "Constant Neutral Mass Gain Scan"^^ . "MS"^^ . "MS:1000324"^^ . "This former purgatory term was made obsolete."^^ . "constant neutral gain scan"^^ . "true"^^ . _:genid448 . _:genid448 . _:genid448 . _:genid448 "OBSOLETE Spectrum of all precursor ions that undergo a selected m/z increment."^^ . _:genid448 "PSI:MS"^^ . . . "A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell."^^ . "constant neutral mass gain spectrum"^^ . "MS"^^ . "MS:1000325"^^ . "constant neutral gain spectrum"^^ . _:genid449 . _:genid449 . _:genid449 . _:genid449 "A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell."^^ . _:genid449 "PSI:MS"^^ . . . "A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum."^^ . "constant neutral mass loss spectrum"^^ . "MS"^^ . "MS:1000326"^^ . "constant neutral loss spectrum"^^ . _:genid450 . _:genid450 . _:genid450 . _:genid450 "A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum."^^ . _:genid450 "PSI:MS"^^ . . "OBSOLETE A type of MS2 experiments with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored."^^ . "MS"^^ . "MS:1000327"^^ . "This term was made obsolete because it was replaced by consecutive reaction monitoring (MS:1000244)."^^ . "consecutive reaction monitoring"^^ . "true"^^ . _:genid451 . _:genid451 . _:genid451 . _:genid451 "OBSOLETE A type of MS2 experiments with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored."^^ . _:genid451 "PSI:MS"^^ . . . "A mass spectrum obtained using a sector mass spectrometer in which the electric sector field E is set to half the value required to transmit the main ion-beam. This spectrum records the signal from doubly charged product ions of charge-stripping reactions."^^ . "MS"^^ . "MS:1000328"^^ . "e/2 mass spectrum"^^ . _:genid452 . _:genid452 . _:genid452 . _:genid452 "A mass spectrum obtained using a sector mass spectrometer in which the electric sector field E is set to half the value required to transmit the main ion-beam. This spectrum records the signal from doubly charged product ions of charge-stripping reactions."^^ . _:genid452 "PSI:MS"^^ . . "OBSOLETE A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer that incorporates at least one magnetic sector and one electric sector. Two or more of the analyzers are scanned simultaneously so as to preserve a predetermined relationship between scan parameters to produce a product ion, precursor ion or constant neutral loss spectrum."^^ . "MS"^^ . "MS:1000329"^^ . "This former purgatory term was made obsolete."^^ . "linked scan"^^ . "true"^^ . _:genid453 . _:genid453 . _:genid453 . _:genid453 "OBSOLETE A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer that incorporates at least one magnetic sector and one electric sector. Two or more of the analyzers are scanned simultaneously so as to preserve a predetermined relationship between scan parameters to produce a product ion, precursor ion or constant neutral loss spectrum."^^ . _:genid453 "PSI:MS"^^ . . "OBSOLETE A linked scan at constant B/E may be performed on a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector. The magnetic field B and the electric field E are scanned simultaneously while the accelerating voltage V is held constant, so as to maintain the ratio of the two fields constant. This linked scan may record a product ion spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors."^^ . "MS"^^ . "MS:1000330"^^ . "This child of the former purgatory term linked scan was made obsolete."^^ . "linked scan at constant b/e"^^ . "true"^^ . _:genid454 . _:genid454 . _:genid454 . _:genid454 "OBSOLETE A linked scan at constant B/E may be performed on a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector. The magnetic field B and the electric field E are scanned simultaneously while the accelerating voltage V is held constant, so as to maintain the ratio of the two fields constant. This linked scan may record a product ion spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors."^^ . _:genid454 "PSI:MS"^^ . . "OBSOLETE A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector. The electric sector field, E, and the accelerating voltage, V, are scanned simultaneously, so as to maintain the ratio E2/V at a constant value. This linked scan recordss a product ion spectrum of dissociation or other reactions occurring in a field free region (FFR) preceding the two sectors."^^ . "MS"^^ . "MS:1000331"^^ . "This child of the former purgatory term linked scan was made obsolete."^^ . "Linked Scan at Constant E2/V"^^ . "true"^^ . _:genid455 . _:genid455 . _:genid455 . _:genid455 "OBSOLETE A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector. The electric sector field, E, and the accelerating voltage, V, are scanned simultaneously, so as to maintain the ratio E2/V at a constant value. This linked scan recordss a product ion spectrum of dissociation or other reactions occurring in a field free region (FFR) preceding the two sectors."^^ . _:genid455 "PSI:MS"^^ . . "OBSOLETE A linked scan performed on a sector mass spectrometer that incorporates at least one electric sector plus one magnetic sector in either order. The accelerating voltage is fixed and the magnetic field, B, and the electric field, E, are scanned simultaneously so as to maintain the ratio B2/E at a constant value. This linked scan records a precursor ion spectrum of dissociation or other reactions occurring in the field free region preceding the two sectors. The term B2/E linked scan is not recommended."^^ . "MS"^^ . "MS:1000332"^^ . "This child of the former purgatory term linked scan was made obsolete."^^ . "Linked Scan at Constant B2/E"^^ . "true"^^ . _:genid456 . _:genid456 . _:genid456 . _:genid456 "OBSOLETE A linked scan performed on a sector mass spectrometer that incorporates at least one electric sector plus one magnetic sector in either order. The accelerating voltage is fixed and the magnetic field, B, and the electric field, E, are scanned simultaneously so as to maintain the ratio B2/E at a constant value. This linked scan records a precursor ion spectrum of dissociation or other reactions occurring in the field free region preceding the two sectors. The term B2/E linked scan is not recommended."^^ . _:genid456 "PSI:MS"^^ . . "OBSOLETE A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector placed in either order. The accelerating voltage is fixed while scanning the magnetic field, B, and electric field, E, simultaneously, so as to maintain the quantity B[1-(E/E0)]1/2/E at a constant value. This linked scan records a constant neutral mass loss (or gain) spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors. E0 is the electric field required to transmit the singly charged analog of the desired neutral fragment. The term B[1-(E/E0)]1/2/E linked scan."^^ . "MS"^^ . "MS:1000333"^^ . "This child of the former purgatory term linked scan was made obsolete."^^ . "Linked Scan at Constant B[1-(E/E0)]^1/2 / E"^^ . "true"^^ . _:genid457 . _:genid457 . _:genid457 . _:genid457 "OBSOLETE A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector placed in either order. The accelerating voltage is fixed while scanning the magnetic field, B, and electric field, E, simultaneously, so as to maintain the quantity B[1-(E/E0)]1/2/E at a constant value. This linked scan records a constant neutral mass loss (or gain) spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors. E0 is the electric field required to transmit the singly charged analog of the desired neutral fragment. The term B[1-(E/E0)]1/2/E linked scan."^^ . _:genid457 "PSI:MS"^^ . . "OBSOLETE A tandem mass spectrometry method in which product ion spectra are recorded in a single m/z analyzer (such as a Paul Ion Trap or FTMS) in discreet steps over time. Ions in a specific m/z range are selected, dissociated, and the product ions analyzed sequentially in time."^^ . "MS"^^ . "MS:1000334"^^ . "This child of the former purgatory term m/z Separation Method was made obsolete."^^ . "MS/MS in Time"^^ . "true"^^ . _:genid458 . _:genid458 . _:genid458 . _:genid458 "OBSOLETE A tandem mass spectrometry method in which product ion spectra are recorded in a single m/z analyzer (such as a Paul Ion Trap or FTMS) in discreet steps over time. Ions in a specific m/z range are selected, dissociated, and the product ions analyzed sequentially in time."^^ . _:genid458 "PSI:MS"^^ . . "OBSOLETE A tandem mass spectrometry method in which product ion spectra are recorded in m/z analyzers separated in space. Specific m/z separation functions are designed such that in one section of the instrument ions are selected, dissociated in an intermediate region, and the product ions are then transmitted to another analyser for m/z separation and data acquisition."^^ . "MS"^^ . "MS:1000335"^^ . "This child of the former purgatory term m/z Separation Method was made obsolete."^^ . "MS/MS in Space"^^ . "true"^^ . _:genid459 . _:genid459 . _:genid459 . _:genid459 "OBSOLETE A tandem mass spectrometry method in which product ion spectra are recorded in m/z analyzers separated in space. Specific m/z separation functions are designed such that in one section of the instrument ions are selected, dissociated in an intermediate region, and the product ions are then transmitted to another analyser for m/z separation and data acquisition."^^ . _:genid459 "PSI:MS"^^ . . . _:genid460 . _:genid460 . _:genid460 . _:genid460 . "The loss of an uncharged species during a rearrangement process. The value slot holds the molecular formula in Hill notation of the neutral loss molecule, see PMID: 21182243. This term must be used in conjunction with a child of the term MS:1002307 (fragmentation ion type)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000336"^^ . "neutral loss"^^ . _:genid461 . _:genid461 . _:genid461 . _:genid461 "The loss of an uncharged species during a rearrangement process. The value slot holds the molecular formula in Hill notation of the neutral loss molecule, see PMID: 21182243. This term must be used in conjunction with a child of the term MS:1002307 (fragmentation ion type)."^^ . _:genid461 "PSI:MS"^^ . _:genid462 . _:genid462 . _:genid462 . _:genid462 "value-type:xsd:string"^^ . _:genid462 "The allowed value-type for this CV term."^^ . . "OBSOLETE Serial product ions from dissociation of selected precursor ions where n refers to the number of stages of dissociation. The term granddaughter ion is deprecated."^^ . "MS"^^ . "granddaughter ion"^^ . "MS:1000337"^^ . "This child of the former purgatory term product ion was made obsolete."^^ . "nth generation product ion"^^ . "true"^^ . _:genid463 . _:genid463 . _:genid463 . _:genid463 "OBSOLETE Serial product ions from dissociation of selected precursor ions where n refers to the number of stages of dissociation. The term granddaughter ion is deprecated."^^ . _:genid463 "PSI:MS"^^ . . "OBSOLETE The specific scan functions or processes that record the appropriate generation of product ion or ions of any m/z selected precursor ions."^^ . "MS"^^ . "MS:1000338"^^ . "This former purgatory term was made obsolete."^^ . "nth generation product ion scan"^^ . "true"^^ . _:genid464 . _:genid464 . _:genid464 . _:genid464 "OBSOLETE The specific scan functions or processes that record the appropriate generation of product ion or ions of any m/z selected precursor ions."^^ . _:genid464 "PSI:MS"^^ . . "OBSOLETE The mass spectrum recorded from any mass spectrometer in which the appropriate scan function can be set to record the appropriate generation product ion or ions of m/z selected precursor ions."^^ . "MS"^^ . "MS:1000339"^^ . "This term was made obsolete because it was merged with MSn spectrum (MS:1000580)."^^ . "nth generation product ion spectrum"^^ . "true"^^ . _:genid465 . _:genid465 . _:genid465 . _:genid465 "OBSOLETE The mass spectrum recorded from any mass spectrometer in which the appropriate scan function can be set to record the appropriate generation product ion or ions of m/z selected precursor ions."^^ . _:genid465 "PSI:MS"^^ . . "OBSOLETE An ion that reacts to form particular product ions. The reaction can be unimolecular dissociation, ion/molecule reaction, isomerization, or change in charge state. The term parent ion is deprecated."^^ . "MS"^^ . "parent ion"^^ . "MS:1000340"^^ . "This child of the former purgatory term ion role was made obsolete."^^ . "precursor ion"^^ . "true"^^ . _:genid466 . _:genid466 . _:genid466 . _:genid466 "OBSOLETE An ion that reacts to form particular product ions. The reaction can be unimolecular dissociation, ion/molecule reaction, isomerization, or change in charge state. The term parent ion is deprecated."^^ . _:genid466 "PSI:MS"^^ . . . "Spectrum generated by scanning precursor m/z while monitoring a fixed product m/z."^^ . "MS"^^ . "MS:1000341"^^ . "precursor ion spectrum"^^ . _:genid467 . _:genid467 . _:genid467 . _:genid467 "Spectrum generated by scanning precursor m/z while monitoring a fixed product m/z."^^ . _:genid467 "PSI:MS"^^ . . "OBSOLETE An ion formed as the product of a reaction involving a particular precursor ion. The reaction can be unimolecular dissociation to form fragment ions, an ion/molecule reaction, or simply involve a change in the number of charges. The term fragment ion is deprecated. The term daughter ion is deprecated."^^ . "MS"^^ . "daughter ion"^^ . "MS:1000342"^^ . "This child of the former purgatory term ion role was made obsolete."^^ . "product ion"^^ . "true"^^ . _:genid468 . _:genid468 . _:genid468 . _:genid468 "OBSOLETE An ion formed as the product of a reaction involving a particular precursor ion. The reaction can be unimolecular dissociation to form fragment ions, an ion/molecule reaction, or simply involve a change in the number of charges. The term fragment ion is deprecated. The term daughter ion is deprecated."^^ . _:genid468 "PSI:MS"^^ . . . "OBSOLETE A mass spectrum recorded from any spectrometer in which the appropriate m/z separation scan function is set to record the product ion or ions of selected precursor ions."^^ . "MS"^^ . "MS:1000343"^^ . "This term was made obsolete because it was merged with MSn spectrum (MS:1000580)."^^ . "product ion spectrum"^^ . "true"^^ . _:genid469 . _:genid469 . _:genid469 . _:genid469 "OBSOLETE A mass spectrum recorded from any spectrometer in which the appropriate m/z separation scan function is set to record the product ion or ions of selected precursor ions."^^ . _:genid469 "PSI:MS"^^ . . "OBSOLETE A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+."^^ . "Progeny Fragment Ion"^^ . "MS"^^ . "MS:1000344"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "progeny ion"^^ . "true"^^ . _:genid470 . _:genid470 . _:genid470 . _:genid470 "OBSOLETE A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+."^^ . _:genid470 "PSI:MS"^^ . . . "Detector comprising several ion collection elements, arranged in a line or grid where each element is an individual detector."^^ . "MS"^^ . "MS:1000345"^^ . "array detector"^^ . _:genid471 . _:genid471 . _:genid471 . _:genid471 "Detector comprising several ion collection elements, arranged in a line or grid where each element is an individual detector."^^ . _:genid471 "PSI:MS"^^ . . . "A surface that is held at high potential such that ions striking the surface produce electrons that are subsequently detected."^^ . "MS"^^ . "MS:1000346"^^ . "conversion dynode"^^ . _:genid472 . _:genid472 . _:genid472 . _:genid472 "A surface that is held at high potential such that ions striking the surface produce electrons that are subsequently detected."^^ . _:genid472 "PSI:MS"^^ . . . "One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to amplify the current emitted by the photocathode."^^ . "MS"^^ . "MS:1000347"^^ . "dynode"^^ . _:genid473 . _:genid473 . _:genid473 . _:genid473 "One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to amplify the current emitted by the photocathode."^^ . _:genid473 "PSI:MS"^^ . . . "A detector for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane."^^ . "MS"^^ . "MS:1000348"^^ . "focal plane collector"^^ . _:genid474 . _:genid474 . _:genid474 . _:genid474 "A detector for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane."^^ . _:genid474 "PSI:MS"^^ . . . "A detector in which ions strike a conversion dynode to produce electrons that in turn strike a phosphor and the resulting photons are detected by a photomultiplier."^^ . "MS"^^ . "MS:1000349"^^ . "ion-to-photon detector"^^ . _:genid475 . _:genid475 . _:genid475 . _:genid475 "A detector in which ions strike a conversion dynode to produce electrons that in turn strike a phosphor and the resulting photons are detected by a photomultiplier."^^ . _:genid475 "PSI:MS"^^ . . . "A detector in which the ion beam is focused onto a point and the individual ions arrive sequentially."^^ . "MS"^^ . "MS:1000350"^^ . "point collector"^^ . _:genid476 . _:genid476 . _:genid476 . _:genid476 "A detector in which the ion beam is focused onto a point and the individual ions arrive sequentially."^^ . _:genid476 "PSI:MS"^^ . . . "A detector in which the charged particles are accelerated to a high velocity and impinge on a conversion dynode, emitting secondary electrons. The electrons are accelerated onto a phosphor screen, which emits photons that are in turn detected using a photomultiplier or other photon detector."^^ . "MS"^^ . "MS:1000351"^^ . "postacceleration detector"^^ . _:genid477 . _:genid477 . _:genid477 . _:genid477 "A detector in which the charged particles are accelerated to a high velocity and impinge on a conversion dynode, emitting secondary electrons. The electrons are accelerated onto a phosphor screen, which emits photons that are in turn detected using a photomultiplier or other photon detector."^^ . _:genid477 "PSI:MS"^^ . . "OBSOLETE Electrons that are ejected from a sample surface as a result of bombardment by a primary beam of atoms, ions or photons. WAS IN DETECTOR TYPE. Where should it go."^^ . "MS"^^ . "MS:1000352"^^ . "This former purgatory term was made obsolete."^^ . "secondary electron"^^ . "true"^^ . _:genid478 . _:genid478 . _:genid478 . _:genid478 "OBSOLETE Electrons that are ejected from a sample surface as a result of bombardment by a primary beam of atoms, ions or photons. WAS IN DETECTOR TYPE. Where should it go."^^ . _:genid478 "PSI:MS"^^ . . . "Ion formed by the interaction of an ion with one or more atoms or molecules to form an ion containing all the constituent atoms of the precursor ion as well as the additional atoms from the associated atoms or molecules."^^ . "MS"^^ . "MS:1000353"^^ . "adduct ion"^^ . _:genid479 . _:genid479 . _:genid479 . _:genid479 "Ion formed by the interaction of an ion with one or more atoms or molecules to form an ion containing all the constituent atoms of the precursor ion as well as the additional atoms from the associated atoms or molecules."^^ . _:genid479 "PSI:MS"^^ . . "OBSOLETE A planar cyclic ion that obeys the Hueckel (4n + 2) rule where n is a positive integer representing the number of conjugated Pi electrons. Charge delocalization leads to greater stability compared to a hypothetical localized structure."^^ . "MS"^^ . "MS:1000354"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "aromatic ion"^^ . "true"^^ . _:genid480 . _:genid480 . _:genid480 . _:genid480 "OBSOLETE A planar cyclic ion that obeys the Hueckel (4n + 2) rule where n is a positive integer representing the number of conjugated Pi electrons. Charge delocalization leads to greater stability compared to a hypothetical localized structure."^^ . _:genid480 "PSI:MS"^^ . . "OBSOLETE Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the thioacetyl cation CH3-CS+."^^ . "MS"^^ . "MS:1000355"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "analog ion"^^ . "true"^^ . _:genid481 . _:genid481 . _:genid481 . _:genid481 "OBSOLETE Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the thioacetyl cation CH3-CS+."^^ . _:genid481 "PSI:MS"^^ . . "OBSOLETE A planar cyclic ion with 4n ? electrons and is therefore not aromatic."^^ . "MS"^^ . "MS:1000356"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "anti-aromatic ion"^^ . "true"^^ . _:genid482 . _:genid482 . _:genid482 . _:genid482 "OBSOLETE A planar cyclic ion with 4n ? electrons and is therefore not aromatic."^^ . _:genid482 "PSI:MS"^^ . . "OBSOLETE An ion formed by the association of a cation with a neutral molecule, M, for example [M+ Na]+ and [M + K]+. The terms quasi-molecular ion and pseudo-molecular ion should not be used."^^ . "MS"^^ . "MS:1000357"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "cationized molecule"^^ . "true"^^ . _:genid483 . _:genid483 . _:genid483 . _:genid483 "OBSOLETE An ion formed by the association of a cation with a neutral molecule, M, for example [M+ Na]+ and [M + K]+. The terms quasi-molecular ion and pseudo-molecular ion should not be used."^^ . _:genid483 "PSI:MS"^^ . . "OBSOLETE An ion formed by a multi-component atomic or molecular assembly of one or more ions with atoms or molecules, such as [(H20)nH]+, [(NaCl)nNa]+ and [(H3PO3)nHPO3]-."^^ . "MS"^^ . "MS:1000358"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "cluster ion"^^ . "true"^^ . _:genid484 . _:genid484 . _:genid484 . _:genid484 "OBSOLETE An ion formed by a multi-component atomic or molecular assembly of one or more ions with atoms or molecules, such as [(H20)nH]+, [(NaCl)nNa]+ and [(H3PO3)nHPO3]-."^^ . _:genid484 "PSI:MS"^^ . . "OBSOLETE A radical cation or anion in which the charge site and the unpaired electron spin are both formally located in the same atom or group of atoms, as opposed to the spatially separate electronic configuration of distonic ions. The radical cation of methanol, CH3OH+, in which the charge and spin sites are formally located at the O atom is an example of a conventional ion, whereas .CH2-OH2+ is a distonic ion."^^ . "MS"^^ . "MS:1000359"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "Conventional ion"^^ . "true"^^ . _:genid485 . _:genid485 . _:genid485 . _:genid485 "OBSOLETE A radical cation or anion in which the charge site and the unpaired electron spin are both formally located in the same atom or group of atoms, as opposed to the spatially separate electronic configuration of distonic ions. The radical cation of methanol, CH3OH+, in which the charge and spin sites are formally located at the O atom is an example of a conventional ion, whereas .CH2-OH2+ is a distonic ion."^^ . _:genid485 "PSI:MS"^^ . . "OBSOLETE A product ion whose formation reveals structural or compositional information of its precursor. For instance, the phenyl cation in an electron ionization mass spectrum is a diagnostic ion for benzene and derivatives."^^ . "MS"^^ . "MS:1000360"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "diagnostic ion"^^ . "true"^^ . _:genid486 . _:genid486 . _:genid486 . _:genid486 "OBSOLETE A product ion whose formation reveals structural or compositional information of its precursor. For instance, the phenyl cation in an electron ionization mass spectrum is a diagnostic ion for benzene and derivatives."^^ . _:genid486 "PSI:MS"^^ . . "OBSOLETE An ion formed by ionization of a dimer or by the association of an ion with its neutral counterpart such as [M2]+ or [M-H-M]+."^^ . "MS"^^ . "MS:1000361"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "dimeric ion"^^ . "true"^^ . _:genid487 . _:genid487 . _:genid487 . _:genid487 "OBSOLETE An ion formed by ionization of a dimer or by the association of an ion with its neutral counterpart such as [M2]+ or [M-H-M]+."^^ . _:genid487 "PSI:MS"^^ . . "OBSOLETE A radical cation or anion in which the charge site and the unpaired electron spin cannot be both formally located in the same atom or group of atoms as it can be with a conventional ion. For example, CH2-OH2+ is a distonic ion whereas the radical cation of methanol, CH3OH+ is a conventional ion."^^ . "MS"^^ . "MS:1000362"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "distonic ion"^^ . "true"^^ . _:genid488 . _:genid488 . _:genid488 . _:genid488 "OBSOLETE A radical cation or anion in which the charge site and the unpaired electron spin cannot be both formally located in the same atom or group of atoms as it can be with a conventional ion. For example, CH2-OH2+ is a distonic ion whereas the radical cation of methanol, CH3OH+ is a conventional ion."^^ . _:genid488 "PSI:MS"^^ . . "OBSOLETE A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is CH3+. Other examples are the oxenium, sulfenium, nitrenium, phosphenium, and halenium ions."^^ . "MS"^^ . "MS:1000363"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "enium ion"^^ . "true"^^ . _:genid489 . _:genid489 . _:genid489 . _:genid489 "OBSOLETE A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is CH3+. Other examples are the oxenium, sulfenium, nitrenium, phosphenium, and halenium ions."^^ . _:genid489 "PSI:MS"^^ . . "OBSOLETE A product ion that results from the dissociation of a precursor ion."^^ . "MS"^^ . "MS:1000364"^^ . "This term was made obsolete because it was replaced by product ion (MS:1000342)."^^ . "fragment ion"^^ . "true"^^ . _:genid490 . _:genid490 . _:genid490 . _:genid490 "OBSOLETE A product ion that results from the dissociation of a precursor ion."^^ . _:genid490 "PSI:MS"^^ . . "OBSOLETE An atomic or molecular species having a net positive or negative electric charge."^^ . "MS"^^ . "MS:1000365"^^ . "This former purgatory term was made obsolete."^^ . "ion?"^^ . "true"^^ . _:genid491 . _:genid491 . _:genid491 . _:genid491 "OBSOLETE An atomic or molecular species having a net positive or negative electric charge."^^ . _:genid491 "PSI:MS"^^ . . "OBSOLETE An ion that differs only in the isotopic composition of one or more of its constituent atoms. For example CH4+ and CH3D+ or 10BF3 and 11BF3. The term isotopologue is a contraction of isotopic homologue."^^ . "MS"^^ . "MS:1000366"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "Isotopologue ion"^^ . "true"^^ . _:genid492 . _:genid492 . _:genid492 . _:genid492 "OBSOLETE An ion that differs only in the isotopic composition of one or more of its constituent atoms. For example CH4+ and CH3D+ or 10BF3 and 11BF3. The term isotopologue is a contraction of isotopic homologue."^^ . _:genid492 "PSI:MS"^^ . . "OBSOLETE Isomeric ion having the same numbers of each isotopic atom but differing in their positions. Isotopomeric ions can be either configurational isomers in which two atomic isotopes exchange positions or isotopic stereoisomers. The term isotopomer is a shortening of isotopic isomer."^^ . "MS"^^ . "MS:1000367"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "Isotopomeric ion"^^ . "true"^^ . _:genid493 . _:genid493 . _:genid493 . _:genid493 "OBSOLETE Isomeric ion having the same numbers of each isotopic atom but differing in their positions. Isotopomeric ions can be either configurational isomers in which two atomic isotopes exchange positions or isotopic stereoisomers. The term isotopomer is a shortening of isotopic isomer."^^ . _:genid493 "PSI:MS"^^ . . "OBSOLETE An ion that is formed with internal energy higher than the threshold for dissociation but with a lifetime great enough to allow it to exit the ion source and enter the mass spectrometer where it dissociates before detection."^^ . "MS"^^ . "MS:1000368"^^ . "This child of the former purgatory term ion stability type was made obsolete."^^ . "metastable ion"^^ . "true"^^ . _:genid494 . _:genid494 . _:genid494 . _:genid494 "OBSOLETE An ion that is formed with internal energy higher than the threshold for dissociation but with a lifetime great enough to allow it to exit the ion source and enter the mass spectrometer where it dissociates before detection."^^ . _:genid494 "PSI:MS"^^ . . "OBSOLETE An ion formed by the removal of one or more electrons to form a positive ion or the addition off one or more electrons to form a negative ion."^^ . "MS"^^ . "MS:1000369"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "molecular ion"^^ . "true"^^ . _:genid495 . _:genid495 . _:genid495 . _:genid495 "OBSOLETE An ion formed by the removal of one or more electrons to form a positive ion or the addition off one or more electrons to form a negative ion."^^ . _:genid495 "PSI:MS"^^ . . "OBSOLETE An atomic or molecular species having a net negative electric charge."^^ . "MS"^^ . "MS:1000370"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "negative ion"^^ . "true"^^ . _:genid496 . _:genid496 . _:genid496 . _:genid496 "OBSOLETE An atomic or molecular species having a net negative electric charge."^^ . _:genid496 "PSI:MS"^^ . . "OBSOLETE Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation. Note: Tri-coordinated carbenium ions are termed classical ions."^^ . "MS"^^ . "MS:1000371"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "non-classical ion"^^ . "true"^^ . _:genid497 . _:genid497 . _:genid497 . _:genid497 "OBSOLETE Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation. Note: Tri-coordinated carbenium ions are termed classical ions."^^ . _:genid497 "PSI:MS"^^ . . "OBSOLETE A positively charged hypervalent ion of the nonmetallic elements. Examples are the methonium ion CH5+, the hydrogenonium ion H3+ and the hydronium ion H3O+. Other examples are the carbonium, oxonium, sulfonium, nitronium, diazonium, phosphonium, and halonium ions. Onium ions are not limited to monopositive ions; multiply-charged onium ions exist such as the gitonic (proximal) oxonium dication H4O2+ and the distonic oxonium dication H2O+-CH2-CH2-OH2+."^^ . "MS"^^ . "MS:1000372"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "onium ion"^^ . "true"^^ . _:genid498 . _:genid498 . _:genid498 . _:genid498 "OBSOLETE A positively charged hypervalent ion of the nonmetallic elements. Examples are the methonium ion CH5+, the hydrogenonium ion H3+ and the hydronium ion H3O+. Other examples are the carbonium, oxonium, sulfonium, nitronium, diazonium, phosphonium, and halonium ions. Onium ions are not limited to monopositive ions; multiply-charged onium ions exist such as the gitonic (proximal) oxonium dication H4O2+ and the distonic oxonium dication H2O+-CH2-CH2-OH2+."^^ . _:genid498 "PSI:MS"^^ . . "OBSOLETE Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of the cluster of isotopologue molecular ions of BBr3. The term principal ion has also been used to describe ions that have been artificially isotopically enriched in one or more positions such as CH3 13CH3+ or CH2D2 +, but those are best defined as isotopologue ions."^^ . "MS"^^ . "MS:1000373"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "principal ion"^^ . "true"^^ . _:genid499 . _:genid499 . _:genid499 . _:genid499 "OBSOLETE Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of the cluster of isotopologue molecular ions of BBr3. The term principal ion has also been used to describe ions that have been artificially isotopically enriched in one or more positions such as CH3 13CH3+ or CH2D2 +, but those are best defined as isotopologue ions."^^ . _:genid499 "PSI:MS"^^ . . "OBSOLETE An atomic or molecular species having a net positive electric charge."^^ . "MS"^^ . "MS:1000374"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "positive ion"^^ . "true"^^ . _:genid500 . _:genid500 . _:genid500 . _:genid500 "OBSOLETE An atomic or molecular species having a net positive electric charge."^^ . _:genid500 "PSI:MS"^^ . . "OBSOLETE An ion formed by interaction of a neutral molecule with a proton and represented by the symbol [M + H]+, where M is the neutral molecule. The term 'protonated molecular ion,' 'quasi-molecular ion' and 'pseudo-molecular ion' are not recommended."^^ . "MS"^^ . "MS:1000375"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "protonated molecule"^^ . "true"^^ . _:genid501 . _:genid501 . _:genid501 . _:genid501 "OBSOLETE An ion formed by interaction of a neutral molecule with a proton and represented by the symbol [M + H]+, where M is the neutral molecule. The term 'protonated molecular ion,' 'quasi-molecular ion' and 'pseudo-molecular ion' are not recommended."^^ . _:genid501 "PSI:MS"^^ . . "OBSOLETE An ion, either a cation or anion, containing unpaired electrons in its ground state. The unpaired electron is denoted by a superscript dot alongside the superscript symbol for charge, such as for the molecular ion of a molecule M, that is, M+. Radical ions with more than one charge and/or more than one unpaired electron are denoted such as M(2+)(2). Unless the positions of the unpaired electron and charge can be associated with specific atoms, superscript charge designation should be placed before the superscript dot designation."^^ . "MS"^^ . "MS:1000376"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "radical ion"^^ . "true"^^ . _:genid502 . _:genid502 . _:genid502 . _:genid502 "OBSOLETE An ion, either a cation or anion, containing unpaired electrons in its ground state. The unpaired electron is denoted by a superscript dot alongside the superscript symbol for charge, such as for the molecular ion of a molecule M, that is, M+. Radical ions with more than one charge and/or more than one unpaired electron are denoted such as M(2+)(2). Unless the positions of the unpaired electron and charge can be associated with specific atoms, superscript charge designation should be placed before the superscript dot designation."^^ . _:genid502 "PSI:MS"^^ . . "OBSOLETE A stable ion whose structure is known with certainty. These ions are usually formed by direct ionization of a neutral molecule of known structure and are used to verify by comparison the structure of an unknown ion."^^ . "MS"^^ . "MS:1000377"^^ . "This child of the former purgatory term ion chemical type was made obsolete."^^ . "reference ion"^^ . "true"^^ . _:genid503 . _:genid503 . _:genid503 . _:genid503 "OBSOLETE A stable ion whose structure is known with certainty. These ions are usually formed by direct ionization of a neutral molecule of known structure and are used to verify by comparison the structure of an unknown ion."^^ . _:genid503 "PSI:MS"^^ . . "OBSOLETE An ion with internal energy sufficiently low that it does not rearrange or dissociate prior to detection in a mass spectrometer."^^ . "MS"^^ . "MS:1000378"^^ . "This child of the former purgatory term ion stability type was made obsolete."^^ . "stable ion"^^ . "true"^^ . _:genid504 . _:genid504 . _:genid504 . _:genid504 "OBSOLETE An ion with internal energy sufficiently low that it does not rearrange or dissociate prior to detection in a mass spectrometer."^^ . _:genid504 "PSI:MS"^^ . . "OBSOLETE An ion with sufficient energy to dissociate within the ion source."^^ . "MS"^^ . "MS:1000379"^^ . "This child of the former purgatory term ion stability type was made obsolete."^^ . "unstable ion"^^ . "true"^^ . _:genid505 . _:genid505 . _:genid505 . _:genid505 "OBSOLETE An ion with sufficient energy to dissociate within the ion source."^^ . _:genid505 "PSI:MS"^^ . . . "A process whereby an electron is removed from an atom, ion, or molecule to produce an ion in its lowest energy state."^^ . "MS"^^ . "MS:1000380"^^ . "adiabatic ionization"^^ . _:genid506 . _:genid506 . _:genid506 . _:genid506 "A process whereby an electron is removed from an atom, ion, or molecule to produce an ion in its lowest energy state."^^ . _:genid506 "PSI:MS"^^ . . . "An ionization process in which two excited atoms or molecules react to form a single positive ion and an electron."^^ . "MS"^^ . "MS:1000381"^^ . "associative ionization"^^ . _:genid507 . _:genid507 . _:genid507 . _:genid507 "An ionization process in which two excited atoms or molecules react to form a single positive ion and an electron."^^ . _:genid507 "PSI:MS"^^ . . . "Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization."^^ . "MS"^^ . "MS:1000382"^^ . "atmospheric pressure photoionization"^^ . _:genid508 . _:genid508 . _:genid508 . _:genid508 "Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization."^^ . _:genid508 "PSI:MS"^^ . . . "The formation of a neutral when a negative ion in a discrete state with an energy greater than the detachment threshold loses an electron spontaneously without further interaction with an energy source."^^ . "MS"^^ . "MS:1000383"^^ . "autodetachment"^^ . _:genid509 . _:genid509 . _:genid509 . _:genid509 "The formation of a neutral when a negative ion in a discrete state with an energy greater than the detachment threshold loses an electron spontaneously without further interaction with an energy source."^^ . _:genid509 "PSI:MS"^^ . . . "The formation of an ion when an atom or molecule in a discrete state with an energy greater than the ionization threshold loses an electron spontaneously without further interaction with an energy source."^^ . "MS"^^ . "MS:1000384"^^ . "autoionization"^^ . _:genid510 . _:genid510 . _:genid510 . _:genid510 "The formation of an ion when an atom or molecule in a discrete state with an energy greater than the ionization threshold loses an electron spontaneously without further interaction with an energy source."^^ . _:genid510 "PSI:MS"^^ . . . "The interaction of an ion with an atom or molecule in which the charge on the ion is transferred to the neutral without the dissociation of either. Synonymous with charge transfer ionization."^^ . "MS"^^ . "MS:1000385"^^ . "charge exchange ionization"^^ . _:genid511 . _:genid511 . _:genid511 . _:genid511 "The interaction of an ion with an atom or molecule in which the charge on the ion is transferred to the neutral without the dissociation of either. Synonymous with charge transfer ionization."^^ . _:genid511 "PSI:MS"^^ . . . "The reaction of a neutral molecule with an internally excited molecule to form an ion. Note that this term is not synonymous with chemical ionization."^^ . "MS"^^ . "MS:1000386"^^ . "chemi-ionization"^^ . _:genid512 . _:genid512 . _:genid512 . _:genid512 "The reaction of a neutral molecule with an internally excited molecule to form an ion. Note that this term is not synonymous with chemical ionization."^^ . _:genid512 "PSI:MS"^^ . . . "The formation of ions by laser desorption ionization of a sample deposited on a porous silicon surface."^^ . "MS"^^ . "MS:1000387"^^ . "desorption/ionization on silicon"^^ . _:genid513 . _:genid513 . _:genid513 . _:genid513 "The formation of ions by laser desorption ionization of a sample deposited on a porous silicon surface."^^ . _:genid513 "PSI:MS"^^ . . . "The reaction of a gas-phase molecule that results in its decomposition to form products, one of which is an ion."^^ . "MS"^^ . "MS:1000388"^^ . "dissociative ionization"^^ . _:genid514 . _:genid514 . _:genid514 . _:genid514 "The reaction of a gas-phase molecule that results in its decomposition to form products, one of which is an ion."^^ . _:genid514 "PSI:MS"^^ . . . "The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended."^^ . "MS"^^ . "MS:1000389"^^ . "electron ionization"^^ . _:genid515 . _:genid515 . _:genid515 . _:genid515 "The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended."^^ . _:genid515 "PSI:MS"^^ . . "OBSOLETE The removal of solvent molecules clustered around a gas-phase ion by means of heating and/or collisions with gas molecules."^^ . "MS"^^ . "MS:1000390"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "ion desolvation"^^ . "true"^^ . _:genid516 . _:genid516 . _:genid516 . _:genid516 "OBSOLETE The removal of solvent molecules clustered around a gas-phase ion by means of heating and/or collisions with gas molecules."^^ . _:genid516 "PSI:MS"^^ . . "OBSOLETE The reaction of a molecule to form both a positive ion and negative ion fragment among the products."^^ . "MS"^^ . "MS:1000391"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "ion-pair formation"^^ . "true"^^ . _:genid517 . _:genid517 . _:genid517 . _:genid517 "OBSOLETE The reaction of a molecule to form both a positive ion and negative ion fragment among the products."^^ . _:genid517 "PSI:MS"^^ . . . _:genid518 . _:genid518 . _:genid518 . _:genid518 . "The ratio of the number of ions formed to the number of electrons, molecules or photons used."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000392"^^ . "ionization efficiency"^^ . _:genid519 . _:genid519 . _:genid519 . _:genid519 "The ratio of the number of ions formed to the number of electrons, molecules or photons used."^^ . _:genid519 "PSI:MS"^^ . _:genid520 . _:genid520 . _:genid520 . _:genid520 "value-type:xsd:float"^^ . _:genid520 "The allowed value-type for this CV term."^^ . . . "The formation of gas-phase ions by the interaction of a pulsed laser with a solid or liquid material."^^ . "MS"^^ . "MS:1000393"^^ . "laser desorption ionization"^^ . _:genid521 . _:genid521 . _:genid521 . _:genid521 "The formation of gas-phase ions by the interaction of a pulsed laser with a solid or liquid material."^^ . _:genid521 "PSI:MS"^^ . . . "The ionization of any species by the interaction of a focused beam of ions with a sample that is dissolved in a solvent matrix. See also fast atom bombardment and secondary ionization."^^ . "MS"^^ . "MS:1000395"^^ . "liquid secondary ionization"^^ . _:genid522 . _:genid522 . _:genid522 . _:genid522 "The ionization of any species by the interaction of a focused beam of ions with a sample that is dissolved in a solvent matrix. See also fast atom bombardment and secondary ionization."^^ . _:genid522 "PSI:MS"^^ . . . "A semi-permeable membrane separator that permits the passage of gas sample directly to the mass spectrometer ion source."^^ . "MS"^^ . "MS:1000396"^^ . "membrane inlet"^^ . _:genid523 . _:genid523 . _:genid523 . _:genid523 "A semi-permeable membrane separator that permits the passage of gas sample directly to the mass spectrometer ion source."^^ . _:genid523 "PSI:MS"^^ . . . "Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is a result of a mechanical pump. See nanoelectrospray."^^ . "MS"^^ . "MS:1000397"^^ . "microelectrospray"^^ . _:genid524 . _:genid524 . _:genid524 . _:genid524 "Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is a result of a mechanical pump. See nanoelectrospray."^^ . _:genid524 "PSI:MS"^^ . . . "Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray."^^ . "nanospray"^^ . "MS"^^ . "MS:1000398"^^ . "nanoelectrospray"^^ . _:genid525 . _:genid525 . _:genid525 . _:genid525 "Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray."^^ . _:genid525 "PSI:MS"^^ . . . "Ionization that occurs through the interaction of two or more neutral gaseous species, at least one of which is internally excited."^^ . "MS"^^ . "MS:1000399"^^ . "penning ionization"^^ . _:genid526 . _:genid526 . _:genid526 . _:genid526 "Ionization that occurs through the interaction of two or more neutral gaseous species, at least one of which is internally excited."^^ . _:genid526 "PSI:MS"^^ . . . "The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization."^^ . "MS"^^ . "MS:1000400"^^ . "plasma desorption ionization"^^ . _:genid527 . _:genid527 . _:genid527 . _:genid527 "The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization."^^ . _:genid527 "PSI:MS"^^ . . "OBSOLETE An electronic state capable of undergoing auto-Ionization."^^ . "MS"^^ . "MS:1000401"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "pre-ionization state"^^ . "true"^^ . _:genid528 . _:genid528 . _:genid528 . _:genid528 "OBSOLETE An electronic state capable of undergoing auto-Ionization."^^ . _:genid528 "PSI:MS"^^ . . . "The process in which ions are ejected from a sample surface as a result of bombardment by a primary beam of atoms or ions."^^ . "MS"^^ . "MS:1000402"^^ . "secondary ionization"^^ . _:genid529 . _:genid529 . _:genid529 . _:genid529 "The process in which ions are ejected from a sample surface as a result of bombardment by a primary beam of atoms or ions."^^ . _:genid529 "PSI:MS"^^ . . . "The formation of gas-phase ions without extensive fragmentation."^^ . "MS"^^ . "MS:1000403"^^ . "soft ionization"^^ . _:genid530 . _:genid530 . _:genid530 . _:genid530 "The formation of gas-phase ions without extensive fragmentation."^^ . _:genid530 "PSI:MS"^^ . . . "The formation of ions from a solid material by an intermittent electrical discharge."^^ . "MS"^^ . "MS:1000404"^^ . "spark ionization"^^ . _:genid531 . _:genid531 . _:genid531 . _:genid531 "The formation of ions from a solid material by an intermittent electrical discharge."^^ . _:genid531 "PSI:MS"^^ . . . "The formation of gas-phase ions from molecules that are deposited on a particular surface substrate that is irradiated with a pulsed laser. See also matrix-assisted laser desorption ionization."^^ . "MS"^^ . "MS:1000405"^^ . "surface-assisted laser desorption ionization"^^ . _:genid532 . _:genid532 . _:genid532 . _:genid532 "The formation of gas-phase ions from molecules that are deposited on a particular surface substrate that is irradiated with a pulsed laser. See also matrix-assisted laser desorption ionization."^^ . _:genid532 "PSI:MS"^^ . . . "The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature."^^ . "MS"^^ . "MS:1000406"^^ . "surface ionization"^^ . _:genid533 . _:genid533 . _:genid533 . _:genid533 "The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature."^^ . _:genid533 "PSI:MS"^^ . . . "The ionization of a neutral species through contact with a high temperature surface."^^ . "MS"^^ . "MS:1000407"^^ . "thermal ionization"^^ . _:genid534 . _:genid534 . _:genid534 . _:genid534 "The ionization of a neutral species through contact with a high temperature surface."^^ . _:genid534 "PSI:MS"^^ . . . "A process in which an electron is removed from or added to a molecule without a change in the positions of the atoms. The resulting ion is typically in an excited vibrational state."^^ . "MS"^^ . "MS:1000408"^^ . "vertical ionization"^^ . _:genid535 . _:genid535 . _:genid535 . _:genid535 "A process in which an electron is removed from or added to a molecule without a change in the positions of the atoms. The resulting ion is typically in an excited vibrational state."^^ . _:genid535 "PSI:MS"^^ . . "OBSOLETE The reaction of an ion with a neutral species in which the reactants combine to form a single ion."^^ . "MS"^^ . "MS:1000409"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "association reaction"^^ . "true"^^ . _:genid536 . _:genid536 . _:genid536 . _:genid536 "OBSOLETE The reaction of an ion with a neutral species in which the reactants combine to form a single ion."^^ . _:genid536 "PSI:MS"^^ . . "OBSOLETE A homolytic cleavage where the bond fission occurs between at the atom adjacent to the atom at the apparent charge site and an atom removed from the aparent charge site by two bonds."^^ . "MS"^^ . "MS:1000410"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "alpha-cleavage"^^ . "true"^^ . _:genid537 . _:genid537 . _:genid537 . _:genid537 "OBSOLETE A homolytic cleavage where the bond fission occurs between at the atom adjacent to the atom at the apparent charge site and an atom removed from the aparent charge site by two bonds."^^ . _:genid537 "PSI:MS"^^ . . "OBSOLETE A homolytic cleavage where the bond fission occurs between at an atom removed from the apparent charge site atom by two bonds and an atom adjacent to that atom and removed from the aparent charge site by three bonds."^^ . "MS"^^ . "MS:1000411"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "beta-cleavage"^^ . "true"^^ . _:genid538 . _:genid538 . _:genid538 . _:genid538 "OBSOLETE A homolytic cleavage where the bond fission occurs between at an atom removed from the apparent charge site atom by two bonds and an atom adjacent to that atom and removed from the aparent charge site by three bonds."^^ . _:genid538 "PSI:MS"^^ . . . _:genid539 . _:genid539 . _:genid539 . _:genid539 . "An inert gas used for collisional deactivation of internally excited ions."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000412"^^ . "buffer gas"^^ . _:genid540 . _:genid540 . _:genid540 . _:genid540 "An inert gas used for collisional deactivation of internally excited ions."^^ . _:genid540 "PSI:MS"^^ . _:genid541 . _:genid541 . _:genid541 . _:genid541 "value-type:xsd:string"^^ . _:genid541 "The allowed value-type for this CV term."^^ . . "OBSOLETE Fragmentation of an odd electron ion in which the cleaved bond is adjacent to the apparent charge site. Synonymous with charge mediated fragmentation."^^ . "MS"^^ . "MS:1000413"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "charge-induced fragmentation"^^ . "true"^^ . _:genid542 . _:genid542 . _:genid542 . _:genid542 "OBSOLETE Fragmentation of an odd electron ion in which the cleaved bond is adjacent to the apparent charge site. Synonymous with charge mediated fragmentation."^^ . _:genid542 "PSI:MS"^^ . . "OBSOLETE Reaction of an ion with a neutral species in which the charge on the product ion is reversed in sign with respect to the reactant ion."^^ . "MS"^^ . "MS:1000414"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "charge inversion reaction"^^ . "true"^^ . _:genid543 . _:genid543 . _:genid543 . _:genid543 "OBSOLETE Reaction of an ion with a neutral species in which the charge on the product ion is reversed in sign with respect to the reactant ion."^^ . _:genid543 "PSI:MS"^^ . . "OBSOLETE The reaction of an ion with a neutral species with a resulting change in the magnitude or sign of the charge on the reactant ion."^^ . "MS"^^ . "MS:1000415"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "charge permutation reaction"^^ . "true"^^ . _:genid544 . _:genid544 . _:genid544 . _:genid544 "OBSOLETE The reaction of an ion with a neutral species with a resulting change in the magnitude or sign of the charge on the reactant ion."^^ . _:genid544 "PSI:MS"^^ . . "OBSOLETE Reaction of a positive ion with a neutral species in which the positive charge on the product ion is greater than that on the reactant ion."^^ . "MS"^^ . "MS:1000416"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "charge stripping reaction"^^ . "true"^^ . _:genid545 . _:genid545 . _:genid545 . _:genid545 "OBSOLETE Reaction of a positive ion with a neutral species in which the positive charge on the product ion is greater than that on the reactant ion."^^ . _:genid545 "PSI:MS"^^ . . "OBSOLETE The reaction of an ion with a neutral species in which some or all of the charge of the reactant ion is transferred to the neutral species."^^ . "MS"^^ . "MS:1000417"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "charge transfer reaction"^^ . "true"^^ . _:genid546 . _:genid546 . _:genid546 . _:genid546 "OBSOLETE The reaction of an ion with a neutral species in which some or all of the charge of the reactant ion is transferred to the neutral species."^^ . _:genid546 "PSI:MS"^^ . . "OBSOLETE The reaction of an ion with a neutral species in which the translational energy of the collision is converted into internal energy of the ion."^^ . "MS"^^ . "MS:1000418"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "collisional excitation"^^ . "true"^^ . _:genid547 . _:genid547 . _:genid547 . _:genid547 "OBSOLETE The reaction of an ion with a neutral species in which the translational energy of the collision is converted into internal energy of the ion."^^ . _:genid547 "PSI:MS"^^ . . . _:genid548 . _:genid548 . _:genid548 . _:genid548 . "An inert gas used for collisional excitation. The term target gas is not recommended."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000419"^^ . "collision gas"^^ . _:genid549 . _:genid549 . _:genid549 . _:genid549 "An inert gas used for collisional excitation. The term target gas is not recommended."^^ . _:genid549 "PSI:MS"^^ . _:genid550 . _:genid550 . _:genid550 . _:genid550 "value-type:xsd:string"^^ . _:genid550 "The allowed value-type for this CV term."^^ . . "OBSOLETE Fragmentation of a molecule or ion in which both electrons forming the single bond that is broken remain on one of the atoms that were originally bonded. This term is synonymous with heterolysis."^^ . "MS"^^ . "heterolysis"^^ . "MS:1000420"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "heterolytic cleavage"^^ . "true"^^ . _:genid551 . _:genid551 . _:genid551 . _:genid551 "OBSOLETE Fragmentation of a molecule or ion in which both electrons forming the single bond that is broken remain on one of the atoms that were originally bonded. This term is synonymous with heterolysis."^^ . _:genid551 "PSI:MS"^^ . . "OBSOLETE Collision-induced dissociation process wherein the projectile ion has laboratory-frame translational energy higher than 1 keV."^^ . "MS"^^ . "MS:1000421"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "high energy collision"^^ . "true"^^ . _:genid552 . _:genid552 . _:genid552 . _:genid552 "OBSOLETE Collision-induced dissociation process wherein the projectile ion has laboratory-frame translational energy higher than 1 keV."^^ . _:genid552 "PSI:MS"^^ . . . "A collision-induced dissociation process that occurs in a beam-type collision cell."^^ . "HCD"^^ . "MS"^^ . "MS:1000422"^^ . "beam-type collision-induced dissociation"^^ . _:genid553 . _:genid553 . _:genid553 . _:genid553 "A collision-induced dissociation process that occurs in a beam-type collision cell."^^ . _:genid553 "PSI:MS"^^ . . "OBSOLETE Fragmentation of an odd electron ion that results from one of a pair of electrons that form a bond between two atoms moving to form a pair with the odd electron on the atom at the apparent charge site. Fragmentation results in the formation of an even electron ion and a radical. This reaction involves the movement of a single electron and is symbolized by a single-barbed arrow. Synonymous with Homolysis."^^ . "MS"^^ . "homolysis"^^ . "MS:1000423"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "homolytic cleavage"^^ . "true"^^ . _:genid554 . _:genid554 . _:genid554 . _:genid554 "OBSOLETE Fragmentation of an odd electron ion that results from one of a pair of electrons that form a bond between two atoms moving to form a pair with the odd electron on the atom at the apparent charge site. Fragmentation results in the formation of an even electron ion and a radical. This reaction involves the movement of a single electron and is symbolized by a single-barbed arrow. Synonymous with Homolysis."^^ . _:genid554 "PSI:MS"^^ . . "OBSOLETE Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-formed ion in solution prior to introduction into a mass spectrometer, or by reaction of an ion with a deuterated collision gas inside a mass spectrometer."^^ . "MS"^^ . "MS:1000424"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "hydrogen/deuterium exchange"^^ . "true"^^ . _:genid555 . _:genid555 . _:genid555 . _:genid555 "OBSOLETE Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-formed ion in solution prior to introduction into a mass spectrometer, or by reaction of an ion with a deuterated collision gas inside a mass spectrometer."^^ . _:genid555 "PSI:MS"^^ . . "OBSOLETE A plot of the relative abundance of a beam or other collection of ions as a function their loss of translational energy in reactions with neutral species."^^ . "MS"^^ . "MS:1000425"^^ . "This former purgatory term was made obsolete."^^ . "ion energy loss spectrum"^^ . "true"^^ . _:genid556 . _:genid556 . _:genid556 . _:genid556 "OBSOLETE A plot of the relative abundance of a beam or other collection of ions as a function their loss of translational energy in reactions with neutral species."^^ . _:genid556 "PSI:MS"^^ . . "OBSOLETE The reaction of an ion with a neutral species in which one or more electrons are removed from either the ion or neutral."^^ . "MS"^^ . "MS:1000426"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "ionizing collision"^^ . "true"^^ . _:genid557 . _:genid557 . _:genid557 . _:genid557 "OBSOLETE The reaction of an ion with a neutral species in which one or more electrons are removed from either the ion or neutral."^^ . _:genid557 "PSI:MS"^^ . . "OBSOLETE The reaction of an ion with a neutral molecule. The term ion-molecule reaction is not recommended because the hyphen suggests a single species that is that is both an ion and a molecule."^^ . "MS"^^ . "MS:1000427"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "ion/molecule reaction"^^ . "true"^^ . _:genid558 . _:genid558 . _:genid558 . _:genid558 "OBSOLETE The reaction of an ion with a neutral molecule. The term ion-molecule reaction is not recommended because the hyphen suggests a single species that is that is both an ion and a molecule."^^ . _:genid558 "PSI:MS"^^ . . "OBSOLETE A particular type of transition state that lies between precursor and product ions on the reaction coordinate of some ion reactions."^^ . "MS"^^ . "MS:1000428"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "ion/neutral complex"^^ . "true"^^ . _:genid559 . _:genid559 . _:genid559 . _:genid559 "OBSOLETE A particular type of transition state that lies between precursor and product ions on the reaction coordinate of some ion reactions."^^ . _:genid559 "PSI:MS"^^ . . "OBSOLETE A process wherein a charged species interacts with a neutral reactant to produce either chemically different species or changes in the internal energy of one or both of the reactants."^^ . "MS"^^ . "MS:1000429"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "ion/neutral species reaction"^^ . "true"^^ . _:genid560 . _:genid560 . _:genid560 . _:genid560 "OBSOLETE A process wherein a charged species interacts with a neutral reactant to produce either chemically different species or changes in the internal energy of one or both of the reactants."^^ . _:genid560 "PSI:MS"^^ . . "OBSOLETE In this reaction an association reaction is accompanied by the subsequent or simultaneous liberation of a different neutral species as a product."^^ . "MS"^^ . "MS:1000430"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "ion/neutral species exchange reaction"^^ . "true"^^ . _:genid561 . _:genid561 . _:genid561 . _:genid561 "OBSOLETE In this reaction an association reaction is accompanied by the subsequent or simultaneous liberation of a different neutral species as a product."^^ . _:genid561 "PSI:MS"^^ . . "OBSOLETE An approach to determination of ion thermodynamic quantities by a bracketing procedure in which the relative probabilities of competing ion fragmentations are measured via the relative abundances of the reaction products. The extended kinetic method takes the associated entropy changes into account."^^ . "MS"^^ . "MS:1000431"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "kinetic method"^^ . "true"^^ . _:genid562 . _:genid562 . _:genid562 . _:genid562 "OBSOLETE An approach to determination of ion thermodynamic quantities by a bracketing procedure in which the relative probabilities of competing ion fragmentations are measured via the relative abundances of the reaction products. The extended kinetic method takes the associated entropy changes into account."^^ . _:genid562 "PSI:MS"^^ . . "OBSOLETE A collision between an ion and neutral species with translational energy approximately 1000 eV or lower."^^ . "MS"^^ . "MS:1000432"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "low energy collisions"^^ . "true"^^ . _:genid563 . _:genid563 . _:genid563 . _:genid563 "OBSOLETE A collision between an ion and neutral species with translational energy approximately 1000 eV or lower."^^ . _:genid563 "PSI:MS"^^ . . . "A collision-induced dissociation process wherein the precursor ion has the translational energy lower than approximately 1000 eV. This process typically requires multiple collisions and the collisional excitation is cumulative."^^ . "MS"^^ . "MS:1000433"^^ . "low-energy collision-induced dissociation"^^ . _:genid564 . _:genid564 . _:genid564 . _:genid564 "A collision-induced dissociation process wherein the precursor ion has the translational energy lower than approximately 1000 eV. This process typically requires multiple collisions and the collisional excitation is cumulative."^^ . _:genid564 "PSI:MS"^^ . . "OBSOLETE A dissociation reaction triggered by transfer of a hydrogen atom via a 6-member transition state to the formal radical/charge site from a carbon atom four atoms removed from the charge/radical site (the gamma-carbon); subsequent rearrangement of electron density leads to expulsion of an olefin molecule. This term was originally applied to ketone ions where the charge/radical site is the carbonyl oxygen, but it is now more widely applied."^^ . "MS"^^ . "MS:1000434"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "McLafferty Rearrangement"^^ . "true"^^ . _:genid565 . _:genid565 . _:genid565 . _:genid565 "OBSOLETE A dissociation reaction triggered by transfer of a hydrogen atom via a 6-member transition state to the formal radical/charge site from a carbon atom four atoms removed from the charge/radical site (the gamma-carbon); subsequent rearrangement of electron density leads to expulsion of an olefin molecule. This term was originally applied to ketone ions where the charge/radical site is the carbonyl oxygen, but it is now more widely applied."^^ . _:genid565 "PSI:MS"^^ . . . "A process wherein the reactant ion is dissociated as a result of absorption of one or more photons."^^ . "MPD"^^ . "multiphoton dissociation"^^ . "MS"^^ . "MS:1000435"^^ . "photodissociation"^^ . _:genid566 . _:genid566 . _:genid566 . _:genid566 "A process wherein the reactant ion is dissociated as a result of absorption of one or more photons."^^ . _:genid566 "PSI:MS"^^ . . "OBSOLETE Reaction of an ion with a neutral species in which some but not all of the ion charge is transferred to the neutral."^^ . "MS"^^ . "MS:1000436"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "partial charge transfer reaction"^^ . "true"^^ . _:genid567 . _:genid567 . _:genid567 . _:genid567 "OBSOLETE Reaction of an ion with a neutral species in which some but not all of the ion charge is transferred to the neutral."^^ . _:genid567 "PSI:MS"^^ . . "OBSOLETE Chemical transformation involving an ion."^^ . "MS"^^ . "MS:1000437"^^ . "This child of the former purgatory term ion was made obsolete."^^ . "ion reaction"^^ . "true"^^ . _:genid568 . _:genid568 . _:genid568 . _:genid568 "OBSOLETE Chemical transformation involving an ion."^^ . _:genid568 "PSI:MS"^^ . . "OBSOLETE Collision in which the translational energy of the fast-moving collision partner is increased at the expense of internal energy of one or both collision partners."^^ . "MS"^^ . "MS:1000438"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "superelastic collision"^^ . "true"^^ . _:genid569 . _:genid569 . _:genid569 . _:genid569 "OBSOLETE Collision in which the translational energy of the fast-moving collision partner is increased at the expense of internal energy of one or both collision partners."^^ . _:genid569 "PSI:MS"^^ . . "OBSOLETE A process wherein a reactant ion interacts with a surface to produce either chemically different species or a change in the internal energy of the reactant ion."^^ . "MS"^^ . "MS:1000439"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "surface-induced reaction"^^ . "true"^^ . _:genid570 . _:genid570 . _:genid570 . _:genid570 "OBSOLETE A process wherein a reactant ion interacts with a surface to produce either chemically different species or a change in the internal energy of the reactant ion."^^ . _:genid570 "PSI:MS"^^ . . "OBSOLETE Fragmentation reaction in which the molecularity is treated as one, irrespective of whether the dissociative state is that of a metastable ion produced in the ion source or results from collisional excitation of a stable ion."^^ . "MS"^^ . "MS:1000440"^^ . "This child of the former purgatory term ion reaction was made obsolete."^^ . "unimolecular dissociation"^^ . "true"^^ . _:genid571 . _:genid571 . _:genid571 . _:genid571 "OBSOLETE Fragmentation reaction in which the molecularity is treated as one, irrespective of whether the dissociative state is that of a metastable ion produced in the ion source or results from collisional excitation of a stable ion."^^ . _:genid571 "PSI:MS"^^ . . _:genid572 . _:genid572 . _:genid572 . _:genid572 . "Function or process of the mass spectrometer where it records a spectrum."^^ . "MS"^^ . "MS:1000441"^^ . "scan"^^ . _:genid573 . _:genid573 . _:genid573 . _:genid573 "Function or process of the mass spectrometer where it records a spectrum."^^ . _:genid573 "PSI:MS"^^ . . _:genid574 . _:genid574 . _:genid574 . _:genid574 . "Representation of intensity values corresponding to a range of measurement space."^^ . "MS"^^ . "MS:1000442"^^ . "spectrum"^^ . _:genid575 . _:genid575 . _:genid575 . _:genid575 "Representation of intensity values corresponding to a range of measurement space."^^ . _:genid575 "PSI:MS"^^ . . _:genid576 . _:genid576 . _:genid576 . _:genid576 . "Mass analyzer separates the ions according to their mass-to-charge ratio."^^ . "MS"^^ . "MS:1000443"^^ . "mass analyzer type"^^ . _:genid577 . _:genid577 . _:genid577 . _:genid577 "Mass analyzer separates the ions according to their mass-to-charge ratio."^^ . _:genid577 "PSI:MS"^^ . . "OBSOLETE Mass/charge separation Method."^^ . "MS"^^ . "MS:1000444"^^ . "This former purgatory term was made obsolete."^^ . "m/z Separation Method"^^ . "true"^^ . _:genid578 . _:genid578 . _:genid578 . _:genid578 "OBSOLETE Mass/charge separation Method."^^ . _:genid578 "PSI:MS"^^ . . "OBSOLETE Sequential m/z separation method."^^ . "MS"^^ . "MS:1000445"^^ . "This former purgatory term was made obsolete."^^ . "sequential m/z separation method"^^ . "true"^^ . _:genid579 . _:genid579 . _:genid579 . _:genid579 "OBSOLETE Sequential m/z separation method."^^ . _:genid579 "PSI:MS"^^ . . . "The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample."^^ . "FIB"^^ . "MS"^^ . "MS:1000446"^^ . "fast ion bombardment"^^ . _:genid580 . _:genid580 . _:genid580 . _:genid580 "The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample."^^ . _:genid580 "PSI:MS"^^ . . . "Finnigan LTQ MS."^^ . "MS"^^ . "MS:1000447"^^ . "LTQ"^^ . _:genid581 . _:genid581 . _:genid581 . _:genid581 "Finnigan LTQ MS."^^ . _:genid581 "PSI:MS"^^ . . . "Finnigan LTQ FT MS."^^ . "MS"^^ . "MS:1000448"^^ . "LTQ FT"^^ . _:genid582 . _:genid582 . _:genid582 . _:genid582 "Finnigan LTQ FT MS."^^ . _:genid582 "PSI:MS"^^ . . . "Finnigan LTQ Orbitrap MS."^^ . "MS"^^ . "MS:1000449"^^ . "LTQ Orbitrap"^^ . _:genid583 . _:genid583 . _:genid583 . _:genid583 "Finnigan LTQ Orbitrap MS."^^ . _:genid583 "PSI:MS"^^ . . . "Finnigan LXQ MS."^^ . "MS"^^ . "MS:1000450"^^ . "LXQ"^^ . _:genid584 . _:genid584 . _:genid584 . _:genid584 "Finnigan LXQ MS."^^ . _:genid584 "PSI:MS"^^ . . _:genid585 . _:genid585 . _:genid585 . _:genid585 . "Terms used to describe the Analyzer."^^ . "analyzer"^^ . "MS"^^ . "MS:1000451"^^ . "mass analyzer"^^ . _:genid586 . _:genid586 . _:genid586 . _:genid586 "Terms used to describe the Analyzer."^^ . _:genid586 "PSI:MS"^^ . . _:genid587 . _:genid587 . _:genid587 . _:genid587 . "Terms used to describe types of data processing."^^ . "data processing"^^ . "MS"^^ . "MS:1000452"^^ . "data transformation"^^ . _:genid588 . _:genid588 . _:genid588 . _:genid588 "Terms used to describe types of data processing."^^ . _:genid588 "PSI:MS"^^ . . _:genid589 . _:genid589 . _:genid589 . _:genid589 . "The device that detects ions."^^ . "MS"^^ . "MS:1000453"^^ . "detector"^^ . _:genid590 . _:genid590 . _:genid590 . _:genid590 "The device that detects ions."^^ . _:genid590 "PSI:MS"^^ . . "OBSOLETE Additional terms to describe the instrument as outlined in the mass spec doc, Appendix 1, section 1.5."^^ . "MS"^^ . "MS:1000454"^^ . "This former purgatory term was made obsolete."^^ . "instrument additional description"^^ . "true"^^ . _:genid591 . _:genid591 . _:genid591 . _:genid591 "OBSOLETE Additional terms to describe the instrument as outlined in the mass spec doc, Appendix 1, section 1.5."^^ . _:genid591 "PSI:MS"^^ . . . _:genid592 . _:genid592 . _:genid592 . _:genid592 . "Ion selection properties that are associated with a value."^^ . "MS"^^ . "MS:1000455"^^ . "ion selection attribute"^^ . _:genid593 . _:genid593 . _:genid593 . _:genid593 "Ion selection properties that are associated with a value."^^ . _:genid593 "PSI:MS"^^ . . _:genid594 . _:genid594 . _:genid594 . _:genid594 . "Terms to describe the precursor activation."^^ . "activation"^^ . "MS"^^ . "MS:1000456"^^ . "precursor activation"^^ . _:genid595 . _:genid595 . _:genid595 . _:genid595 "Terms to describe the precursor activation."^^ . _:genid595 "PSI:MS"^^ . . _:genid596 . _:genid596 . _:genid596 . _:genid596 . "Terms to describe the sample."^^ . "MS"^^ . "MS:1000457"^^ . "sample"^^ . _:genid597 . _:genid597 . _:genid597 . _:genid597 "Terms to describe the sample."^^ . _:genid597 "PSI:MS"^^ . . _:genid598 . _:genid598 . _:genid598 . _:genid598 . "Terms to describe the source."^^ . "MS"^^ . "MS:1000458"^^ . "source"^^ . _:genid599 . _:genid599 . _:genid599 . _:genid599 "Terms to describe the source."^^ . _:genid599 "PSI:MS"^^ . . "OBSOLETE Terms used to describe the spectrum."^^ . "MS"^^ . "MS:1000459"^^ . "This former purgatory term was made obsolete."^^ . "spectrum instrument description"^^ . "true"^^ . _:genid600 . _:genid600 . _:genid600 . _:genid600 "OBSOLETE Terms used to describe the spectrum."^^ . _:genid600 "PSI:MS"^^ . . _:genid601 . _:genid601 . _:genid601 . _:genid601 . "OBSOLETE Terms to describe units."^^ . "MS"^^ . "MS:1000460"^^ . "This term was made obsolete because it was redundant with the Unit Ontology term unit (UO:0000000)."^^ . "unit"^^ . "true"^^ . _:genid602 . _:genid602 . _:genid602 . _:genid602 "OBSOLETE Terms to describe units."^^ . _:genid602 "PSI:MS"^^ . . "OBSOLETE Terms to describe Additional."^^ . "MS"^^ . "MS:1000461"^^ . "This former purgatory term was made obsolete."^^ . "additional description"^^ . "true"^^ . _:genid603 . _:genid603 . _:genid603 . _:genid603 "OBSOLETE Terms to describe Additional."^^ . _:genid603 "PSI:MS"^^ . . _:genid604 . _:genid604 . _:genid604 . _:genid604 . "Device used in the construction of a mass spectrometer to focus, contain or otherwise manipulate ions."^^ . "MS"^^ . "MS:1000462"^^ . "ion optics"^^ . _:genid605 . _:genid605 . _:genid605 . _:genid605 "Device used in the construction of a mass spectrometer to focus, contain or otherwise manipulate ions."^^ . _:genid605 "PSI:MS"^^ . . _:genid606 . _:genid606 . _:genid606 . _:genid606 . "Description of the instrument or the mass spectrometer."^^ . "instrument configuration"^^ . "MS"^^ . "MS:1000463"^^ . "instrument"^^ . _:genid607 . _:genid607 . _:genid607 . _:genid607 "Description of the instrument or the mass spectrometer."^^ . _:genid607 "PSI:MS"^^ . . "OBSOLETE A unit of measurement for mass."^^ . "MS"^^ . "MS:1000464"^^ . "This term was made obsolete because it was redundant with Unit Ontology mass unit (UO:0000002)."^^ . "mass unit"^^ . "true"^^ . _:genid608 . _:genid608 . _:genid608 . _:genid608 "OBSOLETE A unit of measurement for mass."^^ . _:genid608 "PSI:MS"^^ . . _:genid609 . _:genid609 . _:genid609 . _:genid609 . "Relative orientation of the electromagnetic field during the selection and detection of ions in the mass spectrometer."^^ . "MS"^^ . "MS:1000465"^^ . "scan polarity"^^ . _:genid610 . _:genid610 . _:genid610 . _:genid610 "Relative orientation of the electromagnetic field during the selection and detection of ions in the mass spectrometer."^^ . _:genid610 "PSI:MS"^^ . . "OBSOLETE Alternating."^^ . "MS"^^ . "MS:1000466"^^ . "This term was made obsolete because ."^^ . "alternating"^^ . "true"^^ . _:genid611 . _:genid611 . _:genid611 . _:genid611 "OBSOLETE Alternating."^^ . _:genid611 "PSI:MS"^^ . . . "The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap family. It provides fast polarity switching and multisignal data acquisition capabilities in a single run while also providing 5 stages of automated data dependent MS2 and 11 stages of manual MS2."^^ . "MS"^^ . "MS:1000467"^^ . "1200 series LC/MSD SL"^^ . _:genid612 . _:genid612 . _:genid612 . _:genid612 "The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap family. It provides fast polarity switching and multisignal data acquisition capabilities in a single run while also providing 5 stages of automated data dependent MS2 and 11 stages of manual MS2."^^ . _:genid612 "PSI:MS"^^ . . . "The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with an entry level single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6110 Quadrupole mass spectrometer has m/z range of 10-1500 and 2500 u/s scan speed. It proves useful for wide range of SIM quantitative applications."^^ . "MS"^^ . "MS:1000468"^^ . "6110 Quadrupole LC/MS"^^ . _:genid613 . _:genid613 . _:genid613 . _:genid613 "The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with an entry level single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6110 Quadrupole mass spectrometer has m/z range of 10-1500 and 2500 u/s scan speed. It proves useful for wide range of SIM quantitative applications."^^ . _:genid613 "PSI:MS"^^ . . . "The 6120A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers. 6120 quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan speed and utilizes multiple signal acquisition."^^ . "MS"^^ . "MS:1000469"^^ . "6120A Quadrupole LC/MS"^^ . _:genid614 . _:genid614 . _:genid614 . _:genid614 "The 6120A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers. 6120 quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan speed and utilizes multiple signal acquisition."^^ . _:genid614 "PSI:MS"^^ . . . "The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 series of Agilent mass spectrometers. The 6130 quadrupole mass spectrometer has m/z range of 2-3000, 2500 u/s scan speed in standard mode and 5250 u/s speed in fast-scan mode. It also uses multiple signal acquisition."^^ . "MS"^^ . "MS:1000470"^^ . "6130 Quadrupole LC/MS"^^ . _:genid615 . _:genid615 . _:genid615 . _:genid615 "The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 series of Agilent mass spectrometers. The 6130 quadrupole mass spectrometer has m/z range of 2-3000, 2500 u/s scan speed in standard mode and 5250 u/s speed in fast-scan mode. It also uses multiple signal acquisition."^^ . _:genid615 "PSI:MS"^^ . . . "The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6140 Quadrupole mass spectrometer has m/z range of 10-1350, 2500 u/s scan speed in standard mode and 10000 u/s speed in fast-scan mode. It also uses multiple signal acquisition."^^ . "MS"^^ . "MS:1000471"^^ . "6140 Quadrupole LC/MS"^^ . _:genid616 . _:genid616 . _:genid616 . _:genid616 "The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6140 Quadrupole mass spectrometer has m/z range of 10-1350, 2500 u/s scan speed in standard mode and 10000 u/s speed in fast-scan mode. It also uses multiple signal acquisition."^^ . _:genid616 "PSI:MS"^^ . . . "The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^ . "MS"^^ . "MS:1000472"^^ . "6210 Time-of-Flight LC/MS"^^ . _:genid617 . _:genid617 . _:genid617 . _:genid617 "The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^ . _:genid617 "PSI:MS"^^ . . . "The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.35 resolution and mass range of 200-4000 with resolution of 3-4. The scan speed varies from 1650-27000 for the respective mass ranges."^^ . "MS"^^ . "MS:1000473"^^ . "6310 Ion Trap LC/MS"^^ . _:genid618 . _:genid618 . _:genid618 . _:genid618 "The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.35 resolution and mass range of 200-4000 with resolution of 3-4. The scan speed varies from 1650-27000 for the respective mass ranges."^^ . _:genid618 "PSI:MS"^^ . . . "The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges."^^ . "MS"^^ . "MS:1000474"^^ . "6320 Ion Trap LC/MS"^^ . _:genid619 . _:genid619 . _:genid619 . _:genid619 "The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges."^^ . _:genid619 "PSI:MS"^^ . . . "The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges."^^ . "MS"^^ . "MS:1000475"^^ . "6330 Ion Trap LC/MS"^^ . _:genid620 . _:genid620 . _:genid620 . _:genid620 "The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges."^^ . _:genid620 "PSI:MS"^^ . . . "The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges."^^ . "MS"^^ . "MS:1000476"^^ . "6340 Ion Trap LC/MS"^^ . _:genid621 . _:genid621 . _:genid621 . _:genid621 "The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges."^^ . _:genid621 "PSI:MS"^^ . . . "The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration."^^ . "6410 Triple Quad LC/MS"^^ . "MS"^^ . "MS:1000477"^^ . "6410 Triple Quadrupole LC/MS"^^ . _:genid622 . _:genid622 . _:genid622 . _:genid622 "The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration."^^ . _:genid622 "PSI:MS"^^ . . . "The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrometers. It has ESI, APCI and APPI ion sources and is a useful ion trap when the amount of sample is not the limiting factor."^^ . "MS"^^ . "MS:1000478"^^ . "1200 series LC/MSD VL"^^ . _:genid623 . _:genid623 . _:genid623 . _:genid623 "The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrometers. It has ESI, APCI and APPI ion sources and is a useful ion trap when the amount of sample is not the limiting factor."^^ . _:genid623 "PSI:MS"^^ . . "OBSOLETE Terms that will likely become obsolete unless there are wails of dissent."^^ . "MS"^^ . "MS:1000479"^^ . "The whole branch purgatory term was made obsolete."^^ . "purgatory"^^ . "true"^^ . _:genid624 . _:genid624 . _:genid624 . _:genid624 "OBSOLETE Terms that will likely become obsolete unless there are wails of dissent."^^ . _:genid624 "PSI:MS"^^ . . _:genid625 . _:genid625 . _:genid625 . _:genid625 . "Analyzer properties that are associated with a value."^^ . "MS"^^ . "MS:1000480"^^ . "mass analyzer attribute"^^ . _:genid626 . _:genid626 . _:genid626 . _:genid626 "Analyzer properties that are associated with a value."^^ . _:genid626 "PSI:MS"^^ . . _:genid627 . _:genid627 . _:genid627 . _:genid627 . "Detector attribute recognized as a value."^^ . "MS"^^ . "MS:1000481"^^ . "detector attribute"^^ . _:genid628 . _:genid628 . _:genid628 . _:genid628 "Detector attribute recognized as a value."^^ . _:genid628 "PSI:MS"^^ . . _:genid629 . _:genid629 . _:genid629 . _:genid629 . "Property of a source device that need a value."^^ . "MS"^^ . "MS:1000482"^^ . "source attribute"^^ . _:genid630 . _:genid630 . _:genid630 . _:genid630 "Property of a source device that need a value."^^ . _:genid630 "PSI:MS"^^ . . . "Thermo Fisher Scientific instrument model. The company has gone through several names including Thermo Finnigan, Thermo Scientific."^^ . "MS"^^ . "Thermo Scientific"^^ . "MS:1000483"^^ . "Thermo Fisher Scientific instrument model"^^ . _:genid631 . _:genid631 . _:genid631 . _:genid631 "Thermo Fisher Scientific instrument model. The company has gone through several names including Thermo Finnigan, Thermo Scientific."^^ . _:genid631 "PSI:MS"^^ . . . "An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner spindle-like electrode that form an electrostatic field with quadro-logarithmic potential distribution. The frequency of harmonic oscillations of the orbitally trapped ions along the axis of the electrostatic field is independent of the ion velocity and is inversely proportional to the square root of m/z so that the trap can be used as a mass analyzer."^^ . "MS"^^ . "MS:1000484"^^ . "orbitrap"^^ . _:genid632 . _:genid632 . _:genid632 . _:genid632 "An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner spindle-like electrode that form an electrostatic field with quadro-logarithmic potential distribution. The frequency of harmonic oscillations of the orbitally trapped ions along the axis of the electrostatic field is independent of the ion velocity and is inversely proportional to the square root of m/z so that the trap can be used as a mass analyzer."^^ . _:genid632 "PSI:MS"^^ . . . "Nanospray Inlet."^^ . "MS"^^ . "MS:1000485"^^ . "nanospray inlet"^^ . _:genid633 . _:genid633 . _:genid633 . _:genid633 "Nanospray Inlet."^^ . _:genid633 "PSI:MS"^^ . . . _:genid634 . _:genid634 . _:genid634 . _:genid634 . _:genid635 . _:genid635 . _:genid635 . _:genid635 . "Potential difference at the MS source in volts."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000486"^^ . "source potential"^^ . _:genid636 . _:genid636 . _:genid636 . _:genid636 "Potential difference at the MS source in volts."^^ . _:genid636 "PSI:MS"^^ . _:genid637 . _:genid637 . _:genid637 . _:genid637 "value-type:xsd:float"^^ . _:genid637 "The allowed value-type for this CV term."^^ . . . "Ion optics involves components that help focus ion streams in mass spectrometry."^^ . "MS"^^ . "MS:1000487"^^ . "ion optics attribute"^^ . _:genid638 . _:genid638 . _:genid638 . _:genid638 "Ion optics involves components that help focus ion streams in mass spectrometry."^^ . _:genid638 "PSI:MS"^^ . . . "Hitachi instrument model."^^ . "MS"^^ . "MS:1000488"^^ . "Hitachi instrument model"^^ . _:genid639 . _:genid639 . _:genid639 . _:genid639 "Hitachi instrument model."^^ . _:genid639 "PSI:MS"^^ . . . "Varian instrument model."^^ . "MS"^^ . "MS:1000489"^^ . "Varian instrument model"^^ . _:genid640 . _:genid640 . _:genid640 . _:genid640 "Varian instrument model."^^ . _:genid640 "PSI:MS"^^ . . . "Agilent instrument model."^^ . "MS"^^ . "MS:1000490"^^ . "Agilent instrument model"^^ . _:genid641 . _:genid641 . _:genid641 . _:genid641 "Agilent instrument model."^^ . _:genid641 "PSI:MS"^^ . . . "Dionex instrument model."^^ . "MS"^^ . "MS:1000491"^^ . "Dionex instrument model"^^ . _:genid642 . _:genid642 . _:genid642 . _:genid642 "Dionex instrument model."^^ . _:genid642 "PSI:MS"^^ . . . "Thermo Electron Corporation instrument model."^^ . "MS"^^ . "MS:1000492"^^ . "Thermo Electron instrument model"^^ . _:genid643 . _:genid643 . _:genid643 . _:genid643 "Thermo Electron Corporation instrument model."^^ . _:genid643 "PSI:MS"^^ . . . "Finnigan MAT instrument model."^^ . "MS"^^ . "MS:1000493"^^ . "Finnigan MAT instrument model"^^ . _:genid644 . _:genid644 . _:genid644 . _:genid644 "Finnigan MAT instrument model."^^ . _:genid644 "PSI:MS"^^ . . . "Thermo Scientific instrument model."^^ . "MS"^^ . "MS:1000494"^^ . "Thermo Scientific instrument model"^^ . _:genid645 . _:genid645 . _:genid645 . _:genid645 "Thermo Scientific instrument model."^^ . _:genid645 "PSI:MS"^^ . . . "Applied Biosystems instrument model."^^ . "ABI"^^ . "MS"^^ . "MS:1000495"^^ . "Applied Biosystems instrument model"^^ . _:genid646 . _:genid646 . _:genid646 . _:genid646 "Applied Biosystems instrument model."^^ . _:genid646 "PSI:MS"^^ . . . _:genid647 . _:genid647 . _:genid647 . _:genid647 . "Instrument properties that are associated with a value."^^ . "MS"^^ . "MS:1000496"^^ . "instrument attribute"^^ . _:genid648 . _:genid648 . _:genid648 . _:genid648 "Instrument properties that are associated with a value."^^ . _:genid648 "PSI:MS"^^ . . . "Special scan mode where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate."^^ . "enhanced resolution scan"^^ . "MS"^^ . "MS:1000497"^^ . "zoom scan"^^ . _:genid649 . _:genid649 . _:genid649 . _:genid649 "Special scan mode where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate."^^ . _:genid649 "PSI:MS"^^ . . "OBSOLETE Feature of the ion trap mass spectrometer where MS data is acquired over a mass range."^^ . "MS"^^ . "MS:1000498"^^ . "This former purgatory term was made obsolete."^^ . "full scan"^^ . "true"^^ . _:genid650 . _:genid650 . _:genid650 . _:genid650 "OBSOLETE Feature of the ion trap mass spectrometer where MS data is acquired over a mass range."^^ . _:genid650 "PSI:MS"^^ . . _:genid651 . _:genid651 . _:genid651 . _:genid651 . "Nonphysical characteristic attributed to a spectrum."^^ . "MS"^^ . "MS:1000499"^^ . "spectrum attribute"^^ . _:genid652 . _:genid652 . _:genid652 . _:genid652 "Nonphysical characteristic attributed to a spectrum."^^ . _:genid652 "PSI:MS"^^ . . . _:genid653 . _:genid653 . _:genid653 . _:genid653 . _:genid654 . _:genid654 . _:genid654 . _:genid654 . "The lower m/z bound of a mass spectrometer scan window."^^ . "value-type:xsd:float"^^ . "MS"^^ . "mzRangeStop"^^ . "MS:1000500"^^ . "scan window upper limit"^^ . _:genid655 . _:genid655 . _:genid655 . _:genid655 "The lower m/z bound of a mass spectrometer scan window."^^ . _:genid655 "PSI:MS"^^ . _:genid656 . _:genid656 . _:genid656 . _:genid656 "value-type:xsd:float"^^ . _:genid656 "The allowed value-type for this CV term."^^ . . . _:genid657 . _:genid657 . _:genid657 . _:genid657 . _:genid658 . _:genid658 . _:genid658 . _:genid658 . "The upper m/z bound of a mass spectrometer scan window."^^ . "value-type:xsd:float"^^ . "MS"^^ . "mzRangeStart"^^ . "MS:1000501"^^ . "scan window lower limit"^^ . _:genid659 . _:genid659 . _:genid659 . _:genid659 "The upper m/z bound of a mass spectrometer scan window."^^ . _:genid659 "PSI:MS"^^ . _:genid660 . _:genid660 . _:genid660 . _:genid660 "value-type:xsd:float"^^ . _:genid660 "The allowed value-type for this CV term."^^ . . . _:genid661 . _:genid661 . _:genid661 . _:genid661 . _:genid662 . _:genid662 . _:genid662 . _:genid662 . _:genid663 . _:genid663 . _:genid663 . _:genid663 . "The time spent gathering data across a peak."^^ . "value-type:xsd:float"^^ . "MS"^^ . "Scan Duration"^^ . "MS:1000502"^^ . "dwell time"^^ . _:genid664 . _:genid664 . _:genid664 . _:genid664 "The time spent gathering data across a peak."^^ . _:genid664 "PSI:MS"^^ . _:genid665 . _:genid665 . _:genid665 . _:genid665 "value-type:xsd:float"^^ . _:genid665 "The allowed value-type for this CV term."^^ . . . _:genid666 . _:genid666 . _:genid666 . _:genid666 . "Nonphysical characteristic attributed to a spectrum acquisition scan."^^ . "MS"^^ . "MS:1000503"^^ . "scan attribute"^^ . _:genid667 . _:genid667 . _:genid667 . _:genid667 "Nonphysical characteristic attributed to a spectrum acquisition scan."^^ . _:genid667 "PSI:MS"^^ . . . _:genid668 . _:genid668 . _:genid668 . _:genid668 . _:genid669 . _:genid669 . _:genid669 . _:genid669 . "M/z value of the signal of highest intensity in the mass spectrum."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000504"^^ . "base peak m/z"^^ . _:genid670 . _:genid670 . _:genid670 . _:genid670 "M/z value of the signal of highest intensity in the mass spectrum."^^ . _:genid670 "PSI:MS"^^ . _:genid671 . _:genid671 . _:genid671 . _:genid671 "value-type:xsd:float"^^ . _:genid671 "The allowed value-type for this CV term."^^ . . . _:genid672 . _:genid672 . _:genid672 . _:genid672 . _:genid673 . _:genid673 . _:genid673 . _:genid673 . _:genid674 . _:genid674 . _:genid674 . _:genid674 . _:genid675 . _:genid675 . _:genid675 . _:genid675 . _:genid676 . _:genid676 . _:genid676 . _:genid676 . _:genid677 . _:genid677 . _:genid677 . _:genid677 . "The intensity of the greatest peak in the mass spectrum."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000505"^^ . "base peak intensity"^^ . _:genid678 . _:genid678 . _:genid678 . _:genid678 "The intensity of the greatest peak in the mass spectrum."^^ . _:genid678 "PSI:MS"^^ . _:genid679 . _:genid679 . _:genid679 . _:genid679 "value-type:xsd:float"^^ . _:genid679 "The allowed value-type for this CV term."^^ . . "OBSOLETE Ion Role."^^ . "MS"^^ . "MS:1000506"^^ . "This child of the former purgatory term ion was made obsolete."^^ . "ion role"^^ . "true"^^ . _:genid680 . _:genid680 . _:genid680 . _:genid680 "OBSOLETE Ion Role."^^ . _:genid680 "PSI:MS"^^ . . _:genid681 . _:genid681 . _:genid681 . _:genid681 . "Nonphysical characteristic attributed to an ion."^^ . "MS"^^ . "MS:1000507"^^ . "ion property"^^ . _:genid682 . _:genid682 . _:genid682 . _:genid682 "Nonphysical characteristic attributed to an ion."^^ . _:genid682 "PSI:MS"^^ . . "OBSOLETE Ion Type."^^ . "MS"^^ . "MS:1000508"^^ . "This child of the former purgatory term ion was made obsolete."^^ . "ion chemical type"^^ . "true"^^ . _:genid683 . _:genid683 . _:genid683 . _:genid683 "OBSOLETE Ion Type."^^ . _:genid683 "PSI:MS"^^ . . . _:genid684 . _:genid684 . _:genid684 . _:genid684 . _:genid685 . _:genid685 . _:genid685 . _:genid685 . "Activation Energy."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000509"^^ . "activation energy"^^ . _:genid686 . _:genid686 . _:genid686 . _:genid686 "Activation Energy."^^ . _:genid686 "PSI:MS"^^ . _:genid687 . _:genid687 . _:genid687 . _:genid687 "value-type:xsd:float"^^ . _:genid687 "The allowed value-type for this CV term."^^ . . _:genid688 . _:genid688 . _:genid688 . _:genid688 . "Precursor Activation Attribute."^^ . "MS"^^ . "MS:1000510"^^ . "precursor activation attribute"^^ . _:genid689 . _:genid689 . _:genid689 . _:genid689 "Precursor Activation Attribute."^^ . _:genid689 "PSI:MS"^^ . . . _:genid690 . _:genid690 . _:genid690 . _:genid690 . "Stage number achieved in a multi stage mass spectrometry acquisition."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1000511"^^ . "ms level"^^ . _:genid691 . _:genid691 . _:genid691 . _:genid691 "Stage number achieved in a multi stage mass spectrometry acquisition."^^ . _:genid691 "PSI:MS"^^ . _:genid692 . _:genid692 . _:genid692 . _:genid692 "value-type:xsd:int"^^ . _:genid692 "The allowed value-type for this CV term."^^ . . . _:genid693 . _:genid693 . _:genid693 . _:genid693 . "A string unique to Thermo instrument describing instrument settings for the scan."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000512"^^ . "filter string"^^ . _:genid694 . _:genid694 . _:genid694 . _:genid694 "A string unique to Thermo instrument describing instrument settings for the scan."^^ . _:genid694 "PSI:MS"^^ . _:genid695 . _:genid695 . _:genid695 . _:genid695 "value-type:xsd:string"^^ . _:genid695 "The allowed value-type for this CV term."^^ . . _:genid696 . _:genid696 . _:genid696 . _:genid696 . _:genid697 . _:genid697 . _:genid697 . _:genid697 . "A data array of values."^^ . "MS"^^ . "MS:1000513"^^ . "binary data array"^^ . _:genid698 . _:genid698 . _:genid698 . _:genid698 "A data array of values."^^ . _:genid698 "PSI:MS"^^ . . . _:genid699 . _:genid699 . _:genid699 . _:genid699 . "A data array of m/z values."^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000523"^^ . "MS"^^ . "MS:1000514"^^ . "m/z array"^^ . _:genid700 . _:genid700 . _:genid700 . _:genid700 "A data array of m/z values."^^ . _:genid700 "PSI:MS"^^ . _:genid701 . _:genid701 . _:genid701 . _:genid701 "binary-data-type:MS:1000521"^^ . _:genid701 "32-bit float"^^ . _:genid702 . _:genid702 . _:genid702 . _:genid702 "binary-data-type:MS:1000523"^^ . _:genid702 "64-bit float"^^ . . . _:genid703 . _:genid703 . _:genid703 . _:genid703 . _:genid704 . _:genid704 . _:genid704 . _:genid704 . _:genid705 . _:genid705 . _:genid705 . _:genid705 . _:genid706 . _:genid706 . _:genid706 . _:genid706 . _:genid707 . _:genid707 . _:genid707 . _:genid707 . "A data array of intensity values."^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000523"^^ . "MS"^^ . "MS:1000515"^^ . "intensity array"^^ . _:genid708 . _:genid708 . _:genid708 . _:genid708 "A data array of intensity values."^^ . _:genid708 "PSI:MS"^^ . _:genid709 . _:genid709 . _:genid709 . _:genid709 "binary-data-type:MS:1000521"^^ . _:genid709 "32-bit float"^^ . _:genid710 . _:genid710 . _:genid710 . _:genid710 "binary-data-type:MS:1000523"^^ . _:genid710 "64-bit float"^^ . . . "A data array of charge values."^^ . "binary-data-type:MS:1000519"^^ . "MS"^^ . "MS:1000516"^^ . "charge array"^^ . _:genid711 . _:genid711 . _:genid711 . _:genid711 "A data array of charge values."^^ . _:genid711 "PSI:MS"^^ . _:genid712 . _:genid712 . _:genid712 . _:genid712 "binary-data-type:MS:1000519"^^ . _:genid712 "32-bit integer"^^ . . . "A data array of signal-to-noise values."^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000523"^^ . "MS"^^ . "MS:1000517"^^ . "signal to noise array"^^ . _:genid713 . _:genid713 . _:genid713 . _:genid713 "A data array of signal-to-noise values."^^ . _:genid713 "PSI:MS"^^ . _:genid714 . _:genid714 . _:genid714 . _:genid714 "binary-data-type:MS:1000521"^^ . _:genid714 "32-bit float"^^ . _:genid715 . _:genid715 . _:genid715 . _:genid715 "binary-data-type:MS:1000523"^^ . _:genid715 "64-bit float"^^ . . _:genid716 . _:genid716 . _:genid716 . _:genid716 . _:genid717 . _:genid717 . _:genid717 . _:genid717 . "Encoding type of binary data specifying the binary representation and precision, e.g. 64-bit float."^^ . "MS"^^ . "MS:1000518"^^ . "binary data type"^^ . _:genid718 . _:genid718 . _:genid718 . _:genid718 "Encoding type of binary data specifying the binary representation and precision, e.g. 64-bit float."^^ . _:genid718 "PSI:MS"^^ . . . "Signed 32-bit little-endian integer."^^ . "MS"^^ . "MS:1000519"^^ . "32-bit integer"^^ . _:genid719 . _:genid719 . _:genid719 . _:genid719 "Signed 32-bit little-endian integer."^^ . _:genid719 "PSI:MS"^^ . . . "OBSOLETE Signed 16-bit float."^^ . "MS"^^ . "MS:1000520"^^ . "16-bit float"^^ . "true"^^ . _:genid720 . _:genid720 . _:genid720 . _:genid720 "OBSOLETE Signed 16-bit float."^^ . _:genid720 "PSI:MS"^^ . . . "32-bit precision little-endian floating point conforming to IEEE-754."^^ . "MS"^^ . "MS:1000521"^^ . "32-bit float"^^ . _:genid721 . _:genid721 . _:genid721 . _:genid721 "32-bit precision little-endian floating point conforming to IEEE-754."^^ . _:genid721 "PSI:MS"^^ . . . "Signed 64-bit little-endian integer."^^ . "MS"^^ . "MS:1000522"^^ . "64-bit integer"^^ . _:genid722 . _:genid722 . _:genid722 . _:genid722 "Signed 64-bit little-endian integer."^^ . _:genid722 "PSI:MS"^^ . . . "64-bit precision little-endian floating point conforming to IEEE-754."^^ . "MS"^^ . "MS:1000523"^^ . "64-bit float"^^ . _:genid723 . _:genid723 . _:genid723 . _:genid723 "64-bit precision little-endian floating point conforming to IEEE-754."^^ . _:genid723 "PSI:MS"^^ . . _:genid724 . _:genid724 . _:genid724 . _:genid724 . "Describes the data content on the file."^^ . "MS"^^ . "MS:1000524"^^ . "data file content"^^ . _:genid725 . _:genid725 . _:genid725 . _:genid725 "Describes the data content on the file."^^ . _:genid725 "PSI:MS"^^ . . _:genid726 . _:genid726 . _:genid726 . _:genid726 . "Way in which the spectrum is represented, either with regularly spaced data points or with a list of centroided peaks."^^ . "MS"^^ . "MS:1000525"^^ . "spectrum representation"^^ . _:genid727 . _:genid727 . _:genid727 . _:genid727 "Way in which the spectrum is represented, either with regularly spaced data points or with a list of centroided peaks."^^ . _:genid727 "PSI:MS"^^ . . . "Waters data file format found in a Waters RAW directory, generated from an MS acquisition."^^ . "MS"^^ . "MS:1000526"^^ . "Waters raw format"^^ . _:genid728 . _:genid728 . _:genid728 . _:genid728 "Waters data file format found in a Waters RAW directory, generated from an MS acquisition."^^ . _:genid728 "PSI:MS"^^ . . . . _:genid729 . _:genid729 . _:genid729 . _:genid729 . _:genid730 . _:genid730 . _:genid730 . _:genid730 . "Highest m/z value observed in the m/z array."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000527"^^ . "highest observed m/z"^^ . _:genid731 . _:genid731 . _:genid731 . _:genid731 "Highest m/z value observed in the m/z array."^^ . _:genid731 "PSI:MS"^^ . _:genid732 . _:genid732 . _:genid732 . _:genid732 "value-type:xsd:float"^^ . _:genid732 "The allowed value-type for this CV term."^^ . . . . _:genid733 . _:genid733 . _:genid733 . _:genid733 . _:genid734 . _:genid734 . _:genid734 . _:genid734 . "Lowest m/z value observed in the m/z array."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000528"^^ . "lowest observed m/z"^^ . _:genid735 . _:genid735 . _:genid735 . _:genid735 "Lowest m/z value observed in the m/z array."^^ . _:genid735 "PSI:MS"^^ . _:genid736 . _:genid736 . _:genid736 . _:genid736 "value-type:xsd:float"^^ . _:genid736 "The allowed value-type for this CV term."^^ . . . _:genid737 . _:genid737 . _:genid737 . _:genid737 . "Serial Number of the instrument."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000529"^^ . "instrument serial number"^^ . _:genid738 . _:genid738 . _:genid738 . _:genid738 "Serial Number of the instrument."^^ . _:genid738 "PSI:MS"^^ . _:genid739 . _:genid739 . _:genid739 . _:genid739 "value-type:xsd:string"^^ . _:genid739 "The allowed value-type for this CV term."^^ . . . "Conversion of one file format to another."^^ . "MS"^^ . "MS:1000530"^^ . "file format conversion"^^ . _:genid740 . _:genid740 . _:genid740 . _:genid740 "Conversion of one file format to another."^^ . _:genid740 "PSI:MS"^^ . . _:genid741 . _:genid741 . _:genid741 . _:genid741 . "Software related to the recording or transformation of spectra."^^ . "MS"^^ . "MS:1000531"^^ . "software"^^ . _:genid742 . _:genid742 . _:genid742 . _:genid742 "Software related to the recording or transformation of spectra."^^ . _:genid742 "PSI:MS"^^ . . . . . . "Thermo Finnigan software for data acquisition and analysis."^^ . "MS"^^ . "MS:1000532"^^ . "Xcalibur"^^ . _:genid743 . _:genid743 . _:genid743 . _:genid743 "Thermo Finnigan software for data acquisition and analysis."^^ . _:genid743 "PSI:MS"^^ . . . . . "Thermo Finnigan software for data analysis of peptides and proteins."^^ . "MS"^^ . "Bioworks Browser"^^ . "MS:1000533"^^ . "Bioworks"^^ . _:genid744 . _:genid744 . _:genid744 . _:genid744 "Thermo Finnigan software for data analysis of peptides and proteins."^^ . _:genid744 "PSI:MS"^^ . . . . . . "Micromass software for data acquisition and analysis."^^ . "MS"^^ . "MS:1000534"^^ . "MassLynx"^^ . _:genid745 . _:genid745 . _:genid745 . _:genid745 "Micromass software for data acquisition and analysis."^^ . _:genid745 "PSI:MS"^^ . . . . . "Bruker software for data analysis."^^ . "MS"^^ . "MS:1000535"^^ . "FlexAnalysis"^^ . _:genid746 . _:genid746 . _:genid746 . _:genid746 "Bruker software for data analysis."^^ . _:genid746 "PSI:MS"^^ . . . . . . "Applied Biosystems software for data acquisition and analysis."^^ . "MS"^^ . "MS:1000536"^^ . "Data Explorer"^^ . _:genid747 . _:genid747 . _:genid747 . _:genid747 "Applied Biosystems software for data acquisition and analysis."^^ . _:genid747 "PSI:MS"^^ . . . . . . "Applied Biosystems software for data acquisition and analysis."^^ . "MS"^^ . "MS:1000537"^^ . "4700 Explorer"^^ . _:genid748 . _:genid748 . _:genid748 . _:genid748 "Applied Biosystems software for data acquisition and analysis."^^ . _:genid748 "PSI:MS"^^ . . . "A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology."^^ . "wolf"^^ . "MS"^^ . "MS:1000538"^^ . "massWolf"^^ . _:genid749 . _:genid749 . _:genid749 . _:genid749 "A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology."^^ . _:genid749 "PSI:MS"^^ . . . . . . "Applied Biosystems MALDI-TOF data acquisition and analysis system."^^ . "MS"^^ . "MS:1000539"^^ . "Voyager Biospectrometry Workstation System"^^ . _:genid750 . _:genid750 . _:genid750 . _:genid750 "Applied Biosystems MALDI-TOF data acquisition and analysis system."^^ . _:genid750 "PSI:MS"^^ . . . . "Bruker software for data acquisition."^^ . "MS"^^ . "MS:1000540"^^ . "FlexControl"^^ . _:genid751 . _:genid751 . _:genid751 . _:genid751 "Bruker software for data acquisition."^^ . _:genid751 "PSI:MS"^^ . . . "A software program for converting Thermo Finnigan RAW file format to mzXML or mzML. ReAdW was originally developed at the Institute for Systems Biology. Its whimsical interleaved spelling and capitalization is pronounced \"readraw\"."^^ . "MS"^^ . "MS:1000541"^^ . "ReAdW"^^ . _:genid752 . _:genid752 . _:genid752 . _:genid752 "A software program for converting Thermo Finnigan RAW file format to mzXML or mzML. ReAdW was originally developed at the Institute for Systems Biology. Its whimsical interleaved spelling and capitalization is pronounced \"readraw\"."^^ . _:genid752 "PSI:MS"^^ . . . "A software program for converting Applied Biosystems wiff file format to mzXML format. MzStar was originally developed at the Institute for Systems Biology. It is now obsoleted by the MzWiff program."^^ . "MS"^^ . "MS:1000542"^^ . "MzStar"^^ . _:genid753 . _:genid753 . _:genid753 . _:genid753 "A software program for converting Applied Biosystems wiff file format to mzXML format. MzStar was originally developed at the Institute for Systems Biology. It is now obsoleted by the MzWiff program."^^ . _:genid753 "PSI:MS"^^ . . . "Data processing attribute used to describe the type of data processing performed on the data file."^^ . "MS"^^ . "MS:1000543"^^ . "data processing action"^^ . _:genid754 . _:genid754 . _:genid754 . _:genid754 "Data processing attribute used to describe the type of data processing performed on the data file."^^ . _:genid754 "PSI:MS"^^ . . . "Conversion of a file format to Proteomics Standards Initiative mzML file format."^^ . "MS"^^ . "MS:1000544"^^ . "Conversion to mzML"^^ . _:genid755 . _:genid755 . _:genid755 . _:genid755 "Conversion of a file format to Proteomics Standards Initiative mzML file format."^^ . _:genid755 "PSI:MS"^^ . . . "Conversion of a file format to Institute of Systems Biology mzXML file format."^^ . "MS"^^ . "MS:1000545"^^ . "Conversion to mzXML"^^ . _:genid756 . _:genid756 . _:genid756 . _:genid756 "Conversion of a file format to Institute of Systems Biology mzXML file format."^^ . _:genid756 "PSI:MS"^^ . . . "Conversion of a file format to Proteomics Standards Initiative mzData file format."^^ . "MS"^^ . "MS:1000546"^^ . "Conversion to mzData"^^ . _:genid757 . _:genid757 . _:genid757 . _:genid757 "Conversion of a file format to Proteomics Standards Initiative mzData file format."^^ . _:genid757 "PSI:MS"^^ . . _:genid758 . _:genid758 . _:genid758 . _:genid758 . "Object Attribute."^^ . "MS"^^ . "MS:1000547"^^ . "object attribute"^^ . _:genid759 . _:genid759 . _:genid759 . _:genid759 "Object Attribute."^^ . _:genid759 "PSI:MS"^^ . . . _:genid760 . _:genid760 . _:genid760 . _:genid760 . "Sample properties that are associated with a value."^^ . "MS"^^ . "MS:1000548"^^ . "sample attribute"^^ . _:genid761 . _:genid761 . _:genid761 . _:genid761 "Sample properties that are associated with a value."^^ . _:genid761 "PSI:MS"^^ . . . _:genid762 . _:genid762 . _:genid762 . _:genid762 . "Selection window properties that are associated with a value."^^ . "MS"^^ . "MS:1000549"^^ . "selection window attribute"^^ . _:genid763 . _:genid763 . _:genid763 . _:genid763 "Selection window properties that are associated with a value."^^ . _:genid763 "PSI:MS"^^ . . "OBSOLETE Time Unit."^^ . "MS"^^ . "MS:1000550"^^ . "This term was made obsolete because it was redundant with the Unit Ontology term time unit (UO:0000003)."^^ . "time unit"^^ . "true"^^ . _:genid764 . _:genid764 . _:genid764 . _:genid764 "OBSOLETE Time Unit."^^ . _:genid764 "PSI:MS"^^ . . . . . . "SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition."^^ . "MS"^^ . "MS:1000551"^^ . "Analyst"^^ . _:genid765 . _:genid765 . _:genid765 . _:genid765 "SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition."^^ . _:genid765 "PSI:MS"^^ . . "OBSOLETE Maldi Spot Identifier."^^ . "MS"^^ . "MS:1000552"^^ . "This former purgatory term was made obsolete."^^ . "maldi spot identifier"^^ . "true"^^ . _:genid766 . _:genid766 . _:genid766 . _:genid766 "OBSOLETE Maldi Spot Identifier."^^ . _:genid766 "PSI:MS"^^ . . . "A software program for converting Agilent MassHunter format to mzXML or mzML. Trapper was originally developed at the Institute for Systems Biology."^^ . "MS"^^ . "MS:1000553"^^ . "Trapper"^^ . _:genid767 . _:genid767 . _:genid767 . _:genid767 "A software program for converting Agilent MassHunter format to mzXML or mzML. Trapper was originally developed at the Institute for Systems Biology."^^ . _:genid767 "PSI:MS"^^ . . . "ThermoFinnigan LCQ Deca."^^ . "MS"^^ . "MS:1000554"^^ . "LCQ Deca"^^ . _:genid768 . _:genid768 . _:genid768 . _:genid768 "ThermoFinnigan LCQ Deca."^^ . _:genid768 "PSI:MS"^^ . . . "LTQ Orbitrap Discovery."^^ . "MS"^^ . "MS:1000555"^^ . "LTQ Orbitrap Discovery"^^ . _:genid769 . _:genid769 . _:genid769 . _:genid769 "LTQ Orbitrap Discovery."^^ . _:genid769 "PSI:MS"^^ . . . "LTQ Orbitrap XL."^^ . "MS"^^ . "MS:1000556"^^ . "LTQ Orbitrap XL"^^ . _:genid770 . _:genid770 . _:genid770 . _:genid770 "LTQ Orbitrap XL."^^ . _:genid770 "PSI:MS"^^ . . . "LTQ FT Ultra."^^ . "MS"^^ . "MS:1000557"^^ . "LTQ FT Ultra"^^ . _:genid771 . _:genid771 . _:genid771 . _:genid771 "LTQ FT Ultra."^^ . _:genid771 "PSI:MS"^^ . . . "GC Quantum."^^ . "MS"^^ . "MS:1000558"^^ . "GC Quantum"^^ . _:genid772 . _:genid772 . _:genid772 . _:genid772 "GC Quantum."^^ . _:genid772 "PSI:MS"^^ . . _:genid773 . _:genid773 . _:genid773 . _:genid773 . "Spectrum type."^^ . "MS"^^ . "MS:1000559"^^ . "spectrum type"^^ . _:genid774 . _:genid774 . _:genid774 . _:genid774 "Spectrum type."^^ . _:genid774 "PSI:MS"^^ . . . "The format of the file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format."^^ . "MS"^^ . "MS:1000560"^^ . "mass spectrometer file format"^^ . _:genid775 . _:genid775 . _:genid775 . _:genid775 "The format of the file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format."^^ . _:genid775 "PSI:MS"^^ . . _:genid776 . _:genid776 . _:genid776 . _:genid776 . "Checksum is a form of redundancy check, a simple way to protect the integrity of data by detecting errors in data."^^ . "MS"^^ . "MS:1000561"^^ . "data file checksum type"^^ . _:genid777 . _:genid777 . _:genid777 . _:genid777 "Checksum is a form of redundancy check, a simple way to protect the integrity of data by detecting errors in data."^^ . _:genid777 "PSI:MS"^^ . . . "Applied Biosystems WIFF file format."^^ . "MS"^^ . "MS:1000562"^^ . "ABI WIFF format"^^ . _:genid778 . _:genid778 . _:genid778 . _:genid778 "Applied Biosystems WIFF file format."^^ . _:genid778 "PSI:MS"^^ . . . "Thermo Scientific RAW file format."^^ . "MS"^^ . "MS:1000563"^^ . "Thermo RAW format"^^ . _:genid779 . _:genid779 . _:genid779 . _:genid779 "Thermo Scientific RAW file format."^^ . _:genid779 "PSI:MS"^^ . . . "Proteomics Standards Inititative mzData file format."^^ . "MS"^^ . "MS:1000564"^^ . "PSI mzData format"^^ . _:genid780 . _:genid780 . _:genid780 . _:genid780 "Proteomics Standards Inititative mzData file format."^^ . _:genid780 "PSI:MS"^^ . . . "Micromass PKL file format."^^ . "MS"^^ . "MS:1000565"^^ . "Micromass PKL format"^^ . _:genid781 . _:genid781 . _:genid781 . _:genid781 "Micromass PKL file format."^^ . _:genid781 "PSI:MS"^^ . . . "Institute of Systems Biology mzXML file format."^^ . "MS"^^ . "MS:1000566"^^ . "ISB mzXML format"^^ . _:genid782 . _:genid782 . _:genid782 . _:genid782 "Institute of Systems Biology mzXML file format."^^ . _:genid782 "PSI:MS"^^ . . . "Bruker/Agilent YEP file format."^^ . "MS"^^ . "MS:1000567"^^ . "Bruker/Agilent YEP format"^^ . _:genid783 . _:genid783 . _:genid783 . _:genid783 "Bruker/Agilent YEP file format."^^ . _:genid783 "PSI:MS"^^ . . . _:genid784 . _:genid784 . _:genid784 . _:genid784 . "MD5 (Message-Digest algorithm 5) is a (now deprecated) cryptographic hash function with a 128-bit hash value used to check the integrity of files."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000568"^^ . "MD5"^^ . _:genid785 . _:genid785 . _:genid785 . _:genid785 "MD5 (Message-Digest algorithm 5) is a (now deprecated) cryptographic hash function with a 128-bit hash value used to check the integrity of files."^^ . _:genid785 "PSI:MS"^^ . _:genid786 . _:genid786 . _:genid786 . _:genid786 "value-type:xsd:string"^^ . _:genid786 "The allowed value-type for this CV term."^^ . . . _:genid787 . _:genid787 . _:genid787 . _:genid787 . "SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Security Agency (NSA). It is also used to verify file integrity. Since 2011 it has been deprecated by the NIST as a U. S. government standard."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000569"^^ . "SHA-1"^^ . _:genid788 . _:genid788 . _:genid788 . _:genid788 "SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Security Agency (NSA). It is also used to verify file integrity. Since 2011 it has been deprecated by the NIST as a U. S. government standard."^^ . _:genid788 "PSI:MS"^^ . _:genid789 . _:genid789 . _:genid789 . _:genid789 "value-type:xsd:string"^^ . _:genid789 "The allowed value-type for this CV term."^^ . . _:genid790 . _:genid790 . _:genid790 . _:genid790 . "Method used to combine the mass spectra."^^ . "MS"^^ . "MS:1000570"^^ . "spectra combination"^^ . _:genid791 . _:genid791 . _:genid791 . _:genid791 "Method used to combine the mass spectra."^^ . _:genid791 "PSI:MS"^^ . . . "Spectra Sum."^^ . "MS"^^ . "MS:1000571"^^ . "sum of spectra"^^ . _:genid792 . _:genid792 . _:genid792 . _:genid792 "Spectra Sum."^^ . _:genid792 "PSI:MS"^^ . . _:genid793 . _:genid793 . _:genid793 . _:genid793 . _:genid794 . _:genid794 . _:genid794 . _:genid794 . "Compression Type."^^ . "MS"^^ . "MS:1000572"^^ . "binary data compression type"^^ . _:genid795 . _:genid795 . _:genid795 . _:genid795 "Compression Type."^^ . _:genid795 "PSI:MS"^^ . . . "Spectra is combined by calculating the median of the spectra."^^ . "MS"^^ . "MS:1000573"^^ . "median of spectra"^^ . _:genid796 . _:genid796 . _:genid796 . _:genid796 "Spectra is combined by calculating the median of the spectra."^^ . _:genid796 "PSI:MS"^^ . . . "Zlib."^^ . "MS"^^ . "MS:1000574"^^ . "zlib compression"^^ . _:genid797 . _:genid797 . _:genid797 . _:genid797 "Zlib."^^ . _:genid797 "PSI:MS"^^ . . . "Spectra is combined by calculating the mean of the spectra."^^ . "MS"^^ . "MS:1000575"^^ . "mean of spectra"^^ . _:genid798 . _:genid798 . _:genid798 . _:genid798 "Spectra is combined by calculating the mean of the spectra."^^ . _:genid798 "PSI:MS"^^ . . . "No Compression."^^ . "MS"^^ . "MS:1000576"^^ . "no compression"^^ . _:genid799 . _:genid799 . _:genid799 . _:genid799 "No Compression."^^ . _:genid799 "PSI:MS"^^ . . . _:genid800 . _:genid800 . _:genid800 . _:genid800 . "Data file from which an entity is sourced."^^ . "source file"^^ . "MS"^^ . "MS:1000577"^^ . "source data file"^^ . _:genid801 . _:genid801 . _:genid801 . _:genid801 "Data file from which an entity is sourced."^^ . _:genid801 "PSI:MS"^^ . . . "LCQ Fleet."^^ . "MS"^^ . "MS:1000578"^^ . "LCQ Fleet"^^ . _:genid802 . _:genid802 . _:genid802 . _:genid802 "LCQ Fleet."^^ . _:genid802 "PSI:MS"^^ . . . "Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment."^^ . "Q1 spectrum"^^ . "Q3 spectrum"^^ . "Single-Stage Mass Spectrometry"^^ . "full spectrum"^^ . "MS"^^ . "MS:1000579"^^ . "MS1 spectrum"^^ . _:genid803 . _:genid803 . _:genid803 . _:genid803 "Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment."^^ . _:genid803 "PSI:MS"^^ . . . "MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n."^^ . "multiple-stage mass spectrometry spectrum"^^ . "nth generation product ion spectrum"^^ . "product ion spectrum"^^ . "MS"^^ . "MS:1000580"^^ . "MSn spectrum"^^ . _:genid804 . _:genid804 . _:genid804 . _:genid804 "MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n."^^ . _:genid804 "PSI:MS"^^ . . . "Spectrum generated from MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored."^^ . "MS"^^ . "MS:1000581"^^ . "CRM spectrum"^^ . _:genid805 . _:genid805 . _:genid805 . _:genid805 "Spectrum generated from MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored."^^ . _:genid805 "PSI:MS"^^ . . . "Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring)."^^ . "MIM spectrum"^^ . "multiple ion monitoring spectrum"^^ . "selected ion monitoring spectrum"^^ . "MS"^^ . "MS:1000582"^^ . "SIM spectrum"^^ . _:genid806 . _:genid806 . _:genid806 . _:genid806 "Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring)."^^ . _:genid806 "PSI:MS"^^ . . . "Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space."^^ . "MRM spectrum"^^ . "multiple reaction monitoring spectrum"^^ . "selected reaction monitoring spectrum"^^ . "MS"^^ . "MS:1000583"^^ . "SRM spectrum"^^ . _:genid807 . _:genid807 . _:genid807 . _:genid807 "Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space."^^ . _:genid807 "PSI:MS"^^ . . . "Proteomics Standards Inititative mzML file format."^^ . "MS"^^ . "MS:1000584"^^ . "mzML format"^^ . _:genid808 . _:genid808 . _:genid808 . _:genid808 "Proteomics Standards Inititative mzML file format."^^ . _:genid808 "PSI:MS"^^ . . . _:genid809 . _:genid809 . _:genid809 . _:genid809 . "Details about a person or organization to contact in case of concern or discussion about the file."^^ . "MS"^^ . "MS:1000585"^^ . "contact attribute"^^ . _:genid810 . _:genid810 . _:genid810 . _:genid810 "Details about a person or organization to contact in case of concern or discussion about the file."^^ . _:genid810 "PSI:MS"^^ . . . _:genid811 . _:genid811 . _:genid811 . _:genid811 . "Name of the contact person or organization."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000586"^^ . "contact name"^^ . _:genid812 . _:genid812 . _:genid812 . _:genid812 "Name of the contact person or organization."^^ . _:genid812 "PSI:MS"^^ . _:genid813 . _:genid813 . _:genid813 . _:genid813 "value-type:xsd:string"^^ . _:genid813 "The allowed value-type for this CV term."^^ . . . _:genid814 . _:genid814 . _:genid814 . _:genid814 . "Postal address of the contact person or organization."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000587"^^ . "contact address"^^ . _:genid815 . _:genid815 . _:genid815 . _:genid815 "Postal address of the contact person or organization."^^ . _:genid815 "PSI:MS"^^ . _:genid816 . _:genid816 . _:genid816 . _:genid816 "value-type:xsd:string"^^ . _:genid816 "The allowed value-type for this CV term."^^ . . . _:genid817 . _:genid817 . _:genid817 . _:genid817 . "Uniform Resource Locator related to the contact person or organization."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000588"^^ . "contact URL"^^ . _:genid818 . _:genid818 . _:genid818 . _:genid818 "Uniform Resource Locator related to the contact person or organization."^^ . _:genid818 "PSI:MS"^^ . _:genid819 . _:genid819 . _:genid819 . _:genid819 "value-type:xsd:string"^^ . _:genid819 "The allowed value-type for this CV term."^^ . . . _:genid820 . _:genid820 . _:genid820 . _:genid820 . "Email address of the contact person or organization."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000589"^^ . "contact email"^^ . _:genid821 . _:genid821 . _:genid821 . _:genid821 "Email address of the contact person or organization."^^ . _:genid821 "PSI:MS"^^ . _:genid822 . _:genid822 . _:genid822 . _:genid822 "value-type:xsd:string"^^ . _:genid822 "The allowed value-type for this CV term."^^ . . . _:genid823 . _:genid823 . _:genid823 . _:genid823 . "Home institution of the contact person."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000590"^^ . "contact affiliation"^^ . _:genid824 . _:genid824 . _:genid824 . _:genid824 "Home institution of the contact person."^^ . _:genid824 "PSI:MS"^^ . _:genid825 . _:genid825 . _:genid825 . _:genid825 "value-type:xsd:string"^^ . _:genid825 "The allowed value-type for this CV term."^^ . . . "A software program for converting Applied Biosystems wiff file format to the mzXML or mzML format. MzWiff is currently maintained at the Institute for Systems Biology. It replaces the slower mzStar program."^^ . "MS"^^ . "MS:1000591"^^ . "MzWiff"^^ . _:genid826 . _:genid826 . _:genid826 . _:genid826 "A software program for converting Applied Biosystems wiff file format to the mzXML or mzML format. MzWiff is currently maintained at the Institute for Systems Biology. It replaces the slower mzStar program."^^ . _:genid826 "PSI:MS"^^ . . . "A process of reducing spikes of intensity in order to reduce noise while preserving real peak signal. Many algorithms can be applied for this process."^^ . "MS"^^ . "MS:1000592"^^ . "smoothing"^^ . _:genid827 . _:genid827 . _:genid827 . _:genid827 "A process of reducing spikes of intensity in order to reduce noise while preserving real peak signal. Many algorithms can be applied for this process."^^ . _:genid827 "PSI:MS"^^ . . . "A process of removal of varying intensities generated due to variable energy absorption before further processing can take place. Baseline reduction facilitates meaningful comparision between intensities of m/z values."^^ . "MS"^^ . "MS:1000593"^^ . "baseline reduction"^^ . _:genid828 . _:genid828 . _:genid828 . _:genid828 "A process of removal of varying intensities generated due to variable energy absorption before further processing can take place. Baseline reduction facilitates meaningful comparision between intensities of m/z values."^^ . _:genid828 "PSI:MS"^^ . . . "The removal of very low intensity data points that are likely to be spurious noise rather than real signal."^^ . "thresholding"^^ . "MS"^^ . "MS:1000594"^^ . "low intensity data point removal"^^ . _:genid829 . _:genid829 . _:genid829 . _:genid829 "The removal of very low intensity data points that are likely to be spurious noise rather than real signal."^^ . _:genid829 "PSI:MS"^^ . . . _:genid830 . _:genid830 . _:genid830 . _:genid830 . _:genid831 . _:genid831 . _:genid831 . _:genid831 . "A data array of relative time offset values from a reference time."^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000523"^^ . "MS"^^ . "MS:1000595"^^ . "time array"^^ . _:genid832 . _:genid832 . _:genid832 . _:genid832 "A data array of relative time offset values from a reference time."^^ . _:genid832 "PSI:MS"^^ . _:genid833 . _:genid833 . _:genid833 . _:genid833 "binary-data-type:MS:1000521"^^ . _:genid833 "32-bit float"^^ . _:genid834 . _:genid834 . _:genid834 . _:genid834 "binary-data-type:MS:1000523"^^ . _:genid834 "64-bit float"^^ . . _:genid835 . _:genid835 . _:genid835 . _:genid835 . "An attribute of resolution when recording the detector response in absence of the analyte."^^ . "MS"^^ . "MS:1000596"^^ . "measurement method"^^ . _:genid836 . _:genid836 . _:genid836 . _:genid836 "An attribute of resolution when recording the detector response in absence of the analyte."^^ . _:genid836 "PSI:MS"^^ . . . "The electrical potential used to impart kinetic energy to ions in a mass spectrometer."^^ . "MS"^^ . "MS:1000597"^^ . "ion optics type"^^ . _:genid837 . _:genid837 . _:genid837 . _:genid837 "The electrical potential used to impart kinetic energy to ions in a mass spectrometer."^^ . _:genid837 "PSI:MS"^^ . . . "A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons from radical-anions."^^ . "ETD"^^ . "MS"^^ . "MS:1000598"^^ . "electron transfer dissociation"^^ . _:genid838 . _:genid838 . _:genid838 . _:genid838 "A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons from radical-anions."^^ . _:genid838 "DOI:10.1073/pnas.0402700101"^^ . _:genid838 "PMID:15210983"^^ . _:genid838 "PSI:MS"^^ . . . "A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected."^^ . "PQD"^^ . "MS"^^ . "MS:1000599"^^ . "pulsed q dissociation"^^ . _:genid839 . _:genid839 . _:genid839 . _:genid839 "A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected."^^ . _:genid839 "PSI:MS"^^ . . . . "Database application and analysis platform for proteomics."^^ . "MS"^^ . "MS:1000600"^^ . "Proteios"^^ . _:genid840 . _:genid840 . _:genid840 . _:genid840 "Database application and analysis platform for proteomics."^^ . _:genid840 "PSI:MS"^^ . _:genid840 "source:http://www.proteios.org"^^ . . . . . "Waters software for data analysis."^^ . "MS"^^ . "MS:1000601"^^ . "ProteinLynx Global Server"^^ . _:genid841 . _:genid841 . _:genid841 . _:genid841 "Waters software for data analysis."^^ . _:genid841 "PSI:MS"^^ . . . "Shimadzu MALDI-TOF instrument model."^^ . "MS"^^ . "MS:1000602"^^ . "Shimadzu MALDI-TOF instrument model"^^ . _:genid842 . _:genid842 . _:genid842 . _:genid842 "Shimadzu MALDI-TOF instrument model."^^ . _:genid842 "PSI:MS"^^ . . . "Shimadzu Scientific Instruments instrument model."^^ . "MS"^^ . "MS:1000603"^^ . "Shimadzu Scientific Instruments instrument model"^^ . _:genid843 . _:genid843 . _:genid843 . _:genid843 "Shimadzu Scientific Instruments instrument model."^^ . _:genid843 "PSI:MS"^^ . . . "Shimadzu Scientific Instruments LCMS-IT-TOF MS."^^ . "MS"^^ . "MS:1000604"^^ . "LCMS-IT-TOF"^^ . _:genid844 . _:genid844 . _:genid844 . _:genid844 "Shimadzu Scientific Instruments LCMS-IT-TOF MS."^^ . _:genid844 "PSI:MS"^^ . . . "Shimadzu Scientific Instruments LCMS-2010EV MS."^^ . "MS"^^ . "MS:1000605"^^ . "LCMS-2010EV"^^ . _:genid845 . _:genid845 . _:genid845 . _:genid845 "Shimadzu Scientific Instruments LCMS-2010EV MS."^^ . _:genid845 "PSI:MS"^^ . . . "Shimadzu Scientific Instruments LCMS-2010A MS."^^ . "MS"^^ . "MS:1000606"^^ . "LCMS-2010A"^^ . _:genid846 . _:genid846 . _:genid846 . _:genid846 "Shimadzu Scientific Instruments LCMS-2010A MS."^^ . _:genid846 "PSI:MS"^^ . . . "Shimadzu Biotech AXIMA CFR MALDI-TOF MS."^^ . "MS"^^ . "MS:1000607"^^ . "AXIMA CFR MALDI-TOF"^^ . _:genid847 . _:genid847 . _:genid847 . _:genid847 "Shimadzu Biotech AXIMA CFR MALDI-TOF MS."^^ . _:genid847 "PSI:MS"^^ . . . "Shimadzu Biotech AXIMA-QIT MS."^^ . "MS"^^ . "MS:1000608"^^ . "AXIMA-QIT"^^ . _:genid848 . _:genid848 . _:genid848 . _:genid848 "Shimadzu Biotech AXIMA-QIT MS."^^ . _:genid848 "PSI:MS"^^ . . . "Shimadzu Biotech AXIMA-CFR plus MS."^^ . "MS"^^ . "MS:1000609"^^ . "AXIMA-CFR plus"^^ . _:genid849 . _:genid849 . _:genid849 . _:genid849 "Shimadzu Biotech AXIMA-CFR plus MS."^^ . _:genid849 "PSI:MS"^^ . . . "Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS."^^ . "MS"^^ . "MS:1000610"^^ . "AXIMA Performance MALDI-TOF/TOF"^^ . _:genid850 . _:genid850 . _:genid850 . _:genid850 "Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS."^^ . _:genid850 "PSI:MS"^^ . . . "Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS."^^ . "MS"^^ . "MS:1000611"^^ . "AXIMA Confidence MALDI-TOF"^^ . _:genid851 . _:genid851 . _:genid851 . _:genid851 "Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS."^^ . _:genid851 "PSI:MS"^^ . . . "Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS."^^ . "MS"^^ . "MS:1000612"^^ . "AXIMA Assurance Linear MALDI-TOF"^^ . _:genid852 . _:genid852 . _:genid852 . _:genid852 "Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS."^^ . _:genid852 "PSI:MS"^^ . . . "SEQUEST DTA file format."^^ . "MS"^^ . "MS:1000613"^^ . "DTA format"^^ . _:genid853 . _:genid853 . _:genid853 . _:genid853 "SEQUEST DTA file format."^^ . _:genid853 "PSI:MS"^^ . . . "Peak list file format used by ProteinLynx Global Server."^^ . "MS"^^ . "MS:1000614"^^ . "ProteinLynx Global Server mass spectrum XML format"^^ . _:genid854 . _:genid854 . _:genid854 . _:genid854 "Peak list file format used by ProteinLynx Global Server."^^ . _:genid854 "PSI:MS"^^ . . . . "ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb."^^ . "pwiz"^^ . "MS"^^ . "MS:1000615"^^ . "ProteoWizard software"^^ . _:genid855 . _:genid855 . _:genid855 . _:genid855 "ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb."^^ . _:genid855 "PSI:MS"^^ . . . _:genid856 . _:genid856 . _:genid856 . _:genid856 . "A user-defined scan configuration that specifies the instrumental settings in which a spectrum is acquired. An instrument may cycle through a list of preset scan configurations to acquire data. This is a more generic term for the Thermo \"scan event\", which is defined in the Thermo Xcalibur glossary as: a mass spectrometer scan that is defined by choosing the necessary scan parameter settings. Multiple scan events can be defined for each segment of time."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000616"^^ . "preset scan configuration"^^ . _:genid857 . _:genid857 . _:genid857 . _:genid857 "A user-defined scan configuration that specifies the instrumental settings in which a spectrum is acquired. An instrument may cycle through a list of preset scan configurations to acquire data. This is a more generic term for the Thermo \"scan event\", which is defined in the Thermo Xcalibur glossary as: a mass spectrometer scan that is defined by choosing the necessary scan parameter settings. Multiple scan events can be defined for each segment of time."^^ . _:genid857 "PSI:MS"^^ . _:genid858 . _:genid858 . _:genid858 . _:genid858 "value-type:xsd:string"^^ . _:genid858 "The allowed value-type for this CV term."^^ . . . _:genid859 . _:genid859 . _:genid859 . _:genid859 . "A data array of electromagnetic radiation wavelength values."^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000523"^^ . "MS"^^ . "MS:1000617"^^ . "wavelength array"^^ . _:genid860 . _:genid860 . _:genid860 . _:genid860 "A data array of electromagnetic radiation wavelength values."^^ . _:genid860 "PSI:MS"^^ . _:genid861 . _:genid861 . _:genid861 . _:genid861 "binary-data-type:MS:1000521"^^ . _:genid861 "32-bit float"^^ . _:genid862 . _:genid862 . _:genid862 . _:genid862 "binary-data-type:MS:1000523"^^ . _:genid862 "64-bit float"^^ . . . . _:genid863 . _:genid863 . _:genid863 . _:genid863 . _:genid864 . _:genid864 . _:genid864 . _:genid864 . "Highest wavelength observed in an EMR spectrum."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000618"^^ . "highest observed wavelength"^^ . _:genid865 . _:genid865 . _:genid865 . _:genid865 "Highest wavelength observed in an EMR spectrum."^^ . _:genid865 "PSI:MS"^^ . _:genid866 . _:genid866 . _:genid866 . _:genid866 "value-type:xsd:float"^^ . _:genid866 "The allowed value-type for this CV term."^^ . . . . _:genid867 . _:genid867 . _:genid867 . _:genid867 . _:genid868 . _:genid868 . _:genid868 . _:genid868 . "Lowest wavelength observed in an EMR spectrum."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000619"^^ . "lowest observed wavelength"^^ . _:genid869 . _:genid869 . _:genid869 . _:genid869 "Lowest wavelength observed in an EMR spectrum."^^ . _:genid869 "PSI:MS"^^ . _:genid870 . _:genid870 . _:genid870 . _:genid870 "value-type:xsd:float"^^ . _:genid870 "The allowed value-type for this CV term."^^ . . . . "OBSOLETE Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum)."^^ . "MS"^^ . "MS:1000620"^^ . "This term was made obsolete because it was replaced by absorption spectrum (MS:1000806)."^^ . "PDA spectrum"^^ . "true"^^ . _:genid871 . _:genid871 . _:genid871 . _:genid871 "OBSOLETE Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum)."^^ . _:genid871 "PSI:MS"^^ . . . "An array detector used to record spectra in the ultraviolet and visible region of light."^^ . "PDA"^^ . "MS"^^ . "MS:1000621"^^ . "photodiode array detector"^^ . _:genid872 . _:genid872 . _:genid872 . _:genid872 "An array detector used to record spectra in the ultraviolet and visible region of light."^^ . _:genid872 "PSI:MS"^^ . . . "Surveyor PDA."^^ . "MS"^^ . "MS:1000622"^^ . "Surveyor PDA"^^ . _:genid873 . _:genid873 . _:genid873 . _:genid873 "Surveyor PDA."^^ . _:genid873 "PSI:MS"^^ . . . "Accela PDA."^^ . "MS"^^ . "MS:1000623"^^ . "Accela PDA"^^ . _:genid874 . _:genid874 . _:genid874 . _:genid874 "Accela PDA."^^ . _:genid874 "PSI:MS"^^ . . . "Inductive detector."^^ . "image current detector"^^ . "MS"^^ . "MS:1000624"^^ . "inductive detector"^^ . _:genid875 . _:genid875 . _:genid875 . _:genid875 "Inductive detector."^^ . _:genid875 "PSI:MS"^^ . . _:genid876 . _:genid876 . _:genid876 . _:genid876 . "Representation of a chromatographic separation attribute measurement versus time."^^ . "MS"^^ . "MS:1000625"^^ . "chromatogram"^^ . _:genid877 . _:genid877 . _:genid877 . _:genid877 "Representation of a chromatographic separation attribute measurement versus time."^^ . _:genid877 "PSI:MS"^^ . . _:genid878 . _:genid878 . _:genid878 . _:genid878 . "Type of chromatogram measurement being represented."^^ . "MS"^^ . "MS:1000626"^^ . "chromatogram type"^^ . _:genid879 . _:genid879 . _:genid879 . _:genid879 "Type of chromatogram measurement being represented."^^ . _:genid879 "PSI:MS"^^ . . . "Representation of an array of the measurements of a specific single ion current versus time."^^ . "SIC chromatogram"^^ . "MS"^^ . "MS:1000627"^^ . "selected ion current chromatogram"^^ . _:genid880 . _:genid880 . _:genid880 . _:genid880 "Representation of an array of the measurements of a specific single ion current versus time."^^ . _:genid880 "PSI:MS"^^ . . . "Representation of an array of the most intense peaks versus time."^^ . "MS"^^ . "MS:1000628"^^ . "basepeak chromatogram"^^ . _:genid881 . _:genid881 . _:genid881 . _:genid881 "Representation of an array of the most intense peaks versus time."^^ . _:genid881 "PSI:MS"^^ . . . _:genid882 . _:genid882 . _:genid882 . _:genid882 . _:genid883 . _:genid883 . _:genid883 . _:genid883 . _:genid884 . _:genid884 . _:genid884 . _:genid884 . _:genid885 . _:genid885 . _:genid885 . _:genid885 . _:genid886 . _:genid886 . _:genid886 . _:genid886 . _:genid887 . _:genid887 . _:genid887 . _:genid887 . "Threshold below which some action is taken."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000629"^^ . "low intensity threshold"^^ . _:genid888 . _:genid888 . _:genid888 . _:genid888 "Threshold below which some action is taken."^^ . _:genid888 "PSI:MS"^^ . _:genid889 . _:genid889 . _:genid889 . _:genid889 "value-type:xsd:float"^^ . _:genid889 "The allowed value-type for this CV term."^^ . . _:genid890 . _:genid890 . _:genid890 . _:genid890 . "Data processing parameter used in the data processing performed on the data file."^^ . "MS"^^ . "MS:1000630"^^ . "data processing parameter"^^ . _:genid891 . _:genid891 . _:genid891 . _:genid891 "Data processing parameter used in the data processing performed on the data file."^^ . _:genid891 "PSI:MS"^^ . . . _:genid892 . _:genid892 . _:genid892 . _:genid892 . _:genid893 . _:genid893 . _:genid893 . _:genid893 . _:genid894 . _:genid894 . _:genid894 . _:genid894 . _:genid895 . _:genid895 . _:genid895 . _:genid895 . _:genid896 . _:genid896 . _:genid896 . _:genid896 . _:genid897 . _:genid897 . _:genid897 . _:genid897 . "Threshold above which some action is taken."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000631"^^ . "high intensity threshold"^^ . _:genid898 . _:genid898 . _:genid898 . _:genid898 "Threshold above which some action is taken."^^ . _:genid898 "PSI:MS"^^ . _:genid899 . _:genid899 . _:genid899 . _:genid899 "value-type:xsd:float"^^ . _:genid899 "The allowed value-type for this CV term."^^ . . . "Waters oa-ToF based Q-Tof Premier."^^ . "MS"^^ . "MS:1000632"^^ . "Q-Tof Premier"^^ . _:genid900 . _:genid900 . _:genid900 . _:genid900 "Waters oa-ToF based Q-Tof Premier."^^ . _:genid900 "PSI:MS"^^ . . . _:genid901 . _:genid901 . _:genid901 . _:genid901 . "A possible charge state of the ion in a situation where the charge of an ion is known to be one of several possible values rather than a completely unknown value or determined to be a specific charge with reasonable certainty."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1000633"^^ . "possible charge state"^^ . _:genid902 . _:genid902 . _:genid902 . _:genid902 "A possible charge state of the ion in a situation where the charge of an ion is known to be one of several possible values rather than a completely unknown value or determined to be a specific charge with reasonable certainty."^^ . _:genid902 "PSI:MS"^^ . _:genid903 . _:genid903 . _:genid903 . _:genid903 "value-type:xsd:int"^^ . _:genid903 "The allowed value-type for this CV term."^^ . . . "ThermoFinnigan DSQ GC-MS."^^ . "MS"^^ . "MS:1000634"^^ . "DSQ"^^ . _:genid904 . _:genid904 . _:genid904 . _:genid904 "ThermoFinnigan DSQ GC-MS."^^ . _:genid904 "PSI:MS"^^ . . . "Thermo Scientific ITQ 700 GC-MS."^^ . "MS"^^ . "MS:1000635"^^ . "ITQ 700"^^ . _:genid905 . _:genid905 . _:genid905 . _:genid905 "Thermo Scientific ITQ 700 GC-MS."^^ . _:genid905 "PSI:MS"^^ . . . "Thermo Scientific ITQ 900 GC-MS."^^ . "MS"^^ . "MS:1000636"^^ . "ITQ 900"^^ . _:genid906 . _:genid906 . _:genid906 . _:genid906 "Thermo Scientific ITQ 900 GC-MS."^^ . _:genid906 "PSI:MS"^^ . . . "Thermo Scientific ITQ 1100 GC-MS."^^ . "MS"^^ . "MS:1000637"^^ . "ITQ 1100"^^ . _:genid907 . _:genid907 . _:genid907 . _:genid907 "Thermo Scientific ITQ 1100 GC-MS."^^ . _:genid907 "PSI:MS"^^ . . . "Thermo Scientific LTQ XL MS with ETD."^^ . "MS"^^ . "MS:1000638"^^ . "LTQ XL ETD"^^ . _:genid908 . _:genid908 . _:genid908 . _:genid908 "Thermo Scientific LTQ XL MS with ETD."^^ . _:genid908 "PSI:MS"^^ . . . "Thermo Scientific LTQ Orbitrap XL MS with ETD."^^ . "MS"^^ . "MS:1000639"^^ . "LTQ Orbitrap XL ETD"^^ . _:genid909 . _:genid909 . _:genid909 . _:genid909 "Thermo Scientific LTQ Orbitrap XL MS with ETD."^^ . _:genid909 "PSI:MS"^^ . . . "Thermo Scientific DFS HR GC-MS."^^ . "MS"^^ . "MS:1000640"^^ . "DFS"^^ . _:genid910 . _:genid910 . _:genid910 . _:genid910 "Thermo Scientific DFS HR GC-MS."^^ . _:genid910 "PSI:MS"^^ . . . "Thermo Scientific DSQ II GC-MS."^^ . "MS"^^ . "MS:1000641"^^ . "DSQ II"^^ . _:genid911 . _:genid911 . _:genid911 . _:genid911 "Thermo Scientific DSQ II GC-MS."^^ . _:genid911 "PSI:MS"^^ . . . "Thermo Scientific MALDI LTQ XL MS."^^ . "MS"^^ . "MS:1000642"^^ . "MALDI LTQ XL"^^ . _:genid912 . _:genid912 . _:genid912 . _:genid912 "Thermo Scientific MALDI LTQ XL MS."^^ . _:genid912 "PSI:MS"^^ . . . "Thermo Scientific MALDI LTQ Orbitrap MS."^^ . "MS"^^ . "MS:1000643"^^ . "MALDI LTQ Orbitrap"^^ . _:genid913 . _:genid913 . _:genid913 . _:genid913 "Thermo Scientific MALDI LTQ Orbitrap MS."^^ . _:genid913 "PSI:MS"^^ . . . "Thermo Scientific TSQ Quantum Access MS."^^ . "MS"^^ . "MS:1000644"^^ . "TSQ Quantum Access"^^ . _:genid914 . _:genid914 . _:genid914 . _:genid914 "Thermo Scientific TSQ Quantum Access MS."^^ . _:genid914 "PSI:MS"^^ . . . "Thermo Scientific Element XR HR-ICP-MS."^^ . "MS"^^ . "MS:1000645"^^ . "Element XR"^^ . _:genid915 . _:genid915 . _:genid915 . _:genid915 "Thermo Scientific Element XR HR-ICP-MS."^^ . _:genid915 "PSI:MS"^^ . . . "Thermo Scientific Element 2 HR-ICP-MS."^^ . "MS"^^ . "MS:1000646"^^ . "Element 2"^^ . _:genid916 . _:genid916 . _:genid916 . _:genid916 "Thermo Scientific Element 2 HR-ICP-MS."^^ . _:genid916 "PSI:MS"^^ . . . "Thermo Scientific Element GD Glow Discharge MS."^^ . "MS"^^ . "MS:1000647"^^ . "Element GD"^^ . _:genid917 . _:genid917 . _:genid917 . _:genid917 "Thermo Scientific Element GD Glow Discharge MS."^^ . _:genid917 "PSI:MS"^^ . . . "Thermo Scientific GC IsoLink Isotope Ratio MS."^^ . "MS"^^ . "MS:1000648"^^ . "GC IsoLink"^^ . _:genid918 . _:genid918 . _:genid918 . _:genid918 "Thermo Scientific GC IsoLink Isotope Ratio MS."^^ . _:genid918 "PSI:MS"^^ . . . "Thermo Scientific Exactive MS."^^ . "MS"^^ . "MS:1000649"^^ . "Exactive"^^ . _:genid919 . _:genid919 . _:genid919 . _:genid919 "Thermo Scientific Exactive MS."^^ . _:genid919 "PSI:MS"^^ . . . . . "Thermo Scientific software for data analysis of peptides and proteins."^^ . "MS"^^ . "MS:1000650"^^ . "Proteome Discoverer"^^ . _:genid920 . _:genid920 . _:genid920 . _:genid920 "Thermo Scientific software for data analysis of peptides and proteins."^^ . _:genid920 "PSI:MS"^^ . . . "SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200."^^ . "MS"^^ . "MS:1000651"^^ . "3200 QTRAP"^^ . _:genid921 . _:genid921 . _:genid921 . _:genid921 "SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200."^^ . _:genid921 "PSI:MS"^^ . . . "SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer."^^ . "MS"^^ . "MS:1000652"^^ . "4800 Plus MALDI TOF/TOF"^^ . _:genid922 . _:genid922 . _:genid922 . _:genid922 "SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer."^^ . _:genid922 "PSI:MS"^^ . . . "SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS."^^ . "MS"^^ . "MS:1000653"^^ . "API 3200"^^ . _:genid923 . _:genid923 . _:genid923 . _:genid923 "SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS."^^ . _:genid923 "PSI:MS"^^ . . . "SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS."^^ . "MS"^^ . "MS:1000654"^^ . "API 5000"^^ . _:genid924 . _:genid924 . _:genid924 . _:genid924 "SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS."^^ . _:genid924 "PSI:MS"^^ . . . "SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite."^^ . "MS"^^ . "MS:1000655"^^ . "QSTAR Elite"^^ . _:genid925 . _:genid925 . _:genid925 . _:genid925 "SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite."^^ . _:genid925 "PSI:MS"^^ . . . "Applied Biosystems|MDS SCIEX QSTAR Pulsar."^^ . "MS"^^ . "MS:1000656"^^ . "QSTAR Pulsar"^^ . _:genid926 . _:genid926 . _:genid926 . _:genid926 "Applied Biosystems|MDS SCIEX QSTAR Pulsar."^^ . _:genid926 "PSI:MS"^^ . . . "Applied Biosystems|MDS SCIEX QSTAR XL."^^ . "MS"^^ . "MS:1000657"^^ . "QSTAR XL"^^ . _:genid927 . _:genid927 . _:genid927 . _:genid927 "Applied Biosystems|MDS SCIEX QSTAR XL."^^ . _:genid927 "PSI:MS"^^ . . . "Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer."^^ . "MS"^^ . "MS:1000658"^^ . "4800 Proteomics Analyzer"^^ . _:genid928 . _:genid928 . _:genid928 . _:genid928 "Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer."^^ . _:genid928 "PSI:MS"^^ . . . . . . "SCIEX or Applied Biosystems software for data acquisition and analysis."^^ . "MS"^^ . "MS:1000659"^^ . "4000 Series Explorer Software"^^ . _:genid929 . _:genid929 . _:genid929 . _:genid929 "SCIEX or Applied Biosystems software for data acquisition and analysis."^^ . _:genid929 "PSI:MS"^^ . . . . . . "SCIEX or Applied Biosystems software for data acquisition and analysis."^^ . "MS"^^ . "MS:1000661"^^ . "GPS Explorer"^^ . _:genid930 . _:genid930 . _:genid930 . _:genid930 "SCIEX or Applied Biosystems software for data acquisition and analysis."^^ . _:genid930 "PSI:MS"^^ . . . . . "SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification."^^ . "MS"^^ . "MS:1000662"^^ . "LightSight Software"^^ . _:genid931 . _:genid931 . _:genid931 . _:genid931 "SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification."^^ . _:genid931 "PSI:MS"^^ . . . . . "SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant."^^ . "MS"^^ . "MS:1000663"^^ . "ProteinPilot Software"^^ . _:genid932 . _:genid932 . _:genid932 . _:genid932 "SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant."^^ . _:genid932 "PSI:MS"^^ . . . . . "Applied Biosystems|MDS SCIEX software for tissue imaging."^^ . "MS"^^ . "MS:1000664"^^ . "TissueView Software"^^ . _:genid933 . _:genid933 . _:genid933 . _:genid933 "Applied Biosystems|MDS SCIEX software for tissue imaging."^^ . _:genid933 "PSI:MS"^^ . . . . . "Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling."^^ . "MS"^^ . "MS:1000665"^^ . "MarkerView Software"^^ . _:genid934 . _:genid934 . _:genid934 . _:genid934 "Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling."^^ . _:genid934 "PSI:MS"^^ . . . . . "Applied Biosystems|MDS SCIEX software for MRM assay development."^^ . "MS"^^ . "MS:1000666"^^ . "MRMPilot Software"^^ . _:genid935 . _:genid935 . _:genid935 . _:genid935 "Applied Biosystems|MDS SCIEX software for MRM assay development."^^ . _:genid935 "PSI:MS"^^ . . . . . "Applied Biosystems|MDS SCIEX software for bio-related data exploration."^^ . "MS"^^ . "MS:1000667"^^ . "BioAnalyst"^^ . _:genid936 . _:genid936 . _:genid936 . _:genid936 "Applied Biosystems|MDS SCIEX software for bio-related data exploration."^^ . _:genid936 "PSI:MS"^^ . . . . . "Applied Biosystems|MDS SCIEX software for protein identification."^^ . "MS"^^ . "MS:1000668"^^ . "Pro ID"^^ . _:genid937 . _:genid937 . _:genid937 . _:genid937 "Applied Biosystems|MDS SCIEX software for protein identification."^^ . _:genid937 "PSI:MS"^^ . . . . . "Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT."^^ . "MS"^^ . "MS:1000669"^^ . "Pro ICAT"^^ . _:genid938 . _:genid938 . _:genid938 . _:genid938 "Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT."^^ . _:genid938 "PSI:MS"^^ . . . . . "Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ."^^ . "MS"^^ . "MS:1000670"^^ . "Pro Quant"^^ . _:genid939 . _:genid939 . _:genid939 . _:genid939 "Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ."^^ . _:genid939 "PSI:MS"^^ . . . . . "Applied Biosystems|MDS SCIEX software for MS-BLAST identification."^^ . "MS"^^ . "MS:1000671"^^ . "Pro BLAST"^^ . _:genid940 . _:genid940 . _:genid940 . _:genid940 "Applied Biosystems|MDS SCIEX software for MS-BLAST identification."^^ . _:genid940 "PSI:MS"^^ . . . "SCIEX Cliquid software for data analysis and quantitation."^^ . "MS"^^ . "MS:1000672"^^ . "Cliquid"^^ . _:genid941 . _:genid941 . _:genid941 . _:genid941 "SCIEX Cliquid software for data analysis and quantitation."^^ . _:genid941 "PSI:MS"^^ . . . "Applied Biosystems|MDS SCIEX software for MRM assay development."^^ . "MS"^^ . "MS:1000673"^^ . "MIDAS Workflow Designer"^^ . _:genid942 . _:genid942 . _:genid942 . _:genid942 "Applied Biosystems|MDS SCIEX software for MRM assay development."^^ . _:genid942 "PSI:MS"^^ . . . . . "Applied Biosystems|MDS SCIEX software for MRM-based quantitation."^^ . "MS"^^ . "MS:1000674"^^ . "MultiQuant"^^ . _:genid943 . _:genid943 . _:genid943 . _:genid943 "Applied Biosystems|MDS SCIEX software for MRM-based quantitation."^^ . _:genid943 "PSI:MS"^^ . . . "The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^ . "MS"^^ . "MS:1000675"^^ . "6220 Time-of-Flight LC/MS"^^ . _:genid944 . _:genid944 . _:genid944 . _:genid944 "The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^ . _:genid944 "PSI:MS"^^ . . . "The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^ . "MS"^^ . "MS:1000676"^^ . "6510 Quadrupole Time-of-Flight LC/MS"^^ . _:genid945 . _:genid945 . _:genid945 . _:genid945 "The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^ . _:genid945 "PSI:MS"^^ . . . "The 6520A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 26,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^ . "MS"^^ . "MS:1000677"^^ . "6520A Quadrupole Time-of-Flight LC/MS"^^ . _:genid946 . _:genid946 . _:genid946 . _:genid946 "The 6520A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 26,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources."^^ . _:genid946 "PSI:MS"^^ . . . . "Software for data acquisition of 6000 series instruments."^^ . "MS"^^ . "MS:1000678"^^ . "MassHunter Data Acquisition"^^ . _:genid947 . _:genid947 . _:genid947 . _:genid947 "Software for data acquisition of 6000 series instruments."^^ . _:genid947 "PSI:MS"^^ . . . . "Software for open access data acquisition."^^ . "MS"^^ . "MS:1000679"^^ . "MassHunter Easy Access"^^ . _:genid948 . _:genid948 . _:genid948 . _:genid948 "Software for open access data acquisition."^^ . _:genid948 "PSI:MS"^^ . . . . . "Software for data analysis of data from 6000 series instruments."^^ . "MS"^^ . "MS:1000680"^^ . "MassHunter Qualitative Analysis"^^ . _:genid949 . _:genid949 . _:genid949 . _:genid949 "Software for data analysis of data from 6000 series instruments."^^ . _:genid949 "PSI:MS"^^ . . . . . "Software for quantitation of Triple Quadrupole and Quadrupole Time-of-Flight data."^^ . "MS"^^ . "MS:1000681"^^ . "MassHunter Quantitative Analysis"^^ . _:genid950 . _:genid950 . _:genid950 . _:genid950 "Software for quantitation of Triple Quadrupole and Quadrupole Time-of-Flight data."^^ . _:genid950 "PSI:MS"^^ . . . . . "Software for identification of metabolites."^^ . "MS"^^ . "MS:1000682"^^ . "MassHunter Metabolite ID"^^ . _:genid951 . _:genid951 . _:genid951 . _:genid951 "Software for identification of metabolites."^^ . _:genid951 "PSI:MS"^^ . . . . . "Software for protein characterization."^^ . "MS"^^ . "MS:1000683"^^ . "MassHunter BioConfirm"^^ . _:genid952 . _:genid952 . _:genid952 . _:genid952 "Software for protein characterization."^^ . _:genid952 "PSI:MS"^^ . . . . . "Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data."^^ . "MS"^^ . "MS:1000684"^^ . "Genespring MS"^^ . _:genid953 . _:genid953 . _:genid953 . _:genid953 "Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data."^^ . _:genid953 "PSI:MS"^^ . . . . . "Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data."^^ . "MS"^^ . "MS:1000685"^^ . "MassHunter Mass Profiler"^^ . _:genid954 . _:genid954 . _:genid954 . _:genid954 "Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data."^^ . _:genid954 "PSI:MS"^^ . . . . . "Personal Metabolite Database for MassHunter Workstation. Software for identification of human metabolites."^^ . "MS"^^ . "MS:1000686"^^ . "METLIN"^^ . _:genid955 . _:genid955 . _:genid955 . _:genid955 "Personal Metabolite Database for MassHunter Workstation. Software for identification of human metabolites."^^ . _:genid955 "PSI:MS"^^ . . . . . "Software for protein identification and characterization of complex protein digest mixtures."^^ . "MS"^^ . "MS:1000687"^^ . "Spectrum Mill for MassHunter Workstation"^^ . _:genid956 . _:genid956 . _:genid956 . _:genid956 "Software for protein identification and characterization of complex protein digest mixtures."^^ . _:genid956 "PSI:MS"^^ . . . . . . "Software for data analysis of 6300 series ion trap mass spectrometers."^^ . "MS"^^ . "MS:1000688"^^ . "6300 Series Ion Trap Data Analysis Software"^^ . _:genid957 . _:genid957 . _:genid957 . _:genid957 "Software for data analysis of 6300 series ion trap mass spectrometers."^^ . _:genid957 "PSI:MS"^^ . . . "Agilent software for data acquisition and analysis."^^ . "MS"^^ . "MS:1000689"^^ . "Agilent software"^^ . _:genid958 . _:genid958 . _:genid958 . _:genid958 "Agilent software for data acquisition and analysis."^^ . _:genid958 "PSI:MS"^^ . . . "SCIEX or Applied Biosystems software for data acquisition and analysis."^^ . "MS"^^ . "MS:1000690"^^ . "SCIEX software"^^ . _:genid959 . _:genid959 . _:genid959 . _:genid959 "SCIEX or Applied Biosystems software for data acquisition and analysis."^^ . _:genid959 "PSI:MS"^^ . . . "Applied Biosystems|MDS SCIEX software for data acquisition and analysis."^^ . "MS"^^ . "MS:1000691"^^ . "Applied Biosystems software"^^ . _:genid960 . _:genid960 . _:genid960 . _:genid960 "Applied Biosystems|MDS SCIEX software for data acquisition and analysis."^^ . _:genid960 "PSI:MS"^^ . . . "Bruker software for data acquisition and analysis."^^ . "MS"^^ . "MS:1000692"^^ . "Bruker software"^^ . _:genid961 . _:genid961 . _:genid961 . _:genid961 "Bruker software for data acquisition and analysis."^^ . _:genid961 "PSI:MS"^^ . . . "Thermo Finnigan software for data acquisition and analysis."^^ . "MS"^^ . "Bioworks Browser"^^ . "MS:1000693"^^ . "Thermo Finnigan software"^^ . _:genid962 . _:genid962 . _:genid962 . _:genid962 "Thermo Finnigan software for data acquisition and analysis."^^ . _:genid962 "PSI:MS"^^ . . . "Waters software for data acquisition and analysis."^^ . "MS"^^ . "MS:1000694"^^ . "Waters software"^^ . _:genid963 . _:genid963 . _:genid963 . _:genid963 "Waters software for data acquisition and analysis."^^ . _:genid963 "PSI:MS"^^ . . . "Bruker Daltonics' apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR."^^ . "MS"^^ . "MS:1000695"^^ . "apex ultra"^^ . _:genid964 . _:genid964 . _:genid964 . _:genid964 "Bruker Daltonics' apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR."^^ . _:genid964 "PSI:MS"^^ . . . "Bruker Daltonics' autoflex III smartbeam: MALDI TOF."^^ . "MS"^^ . "MS:1000696"^^ . "autoflex III smartbeam"^^ . _:genid965 . _:genid965 . _:genid965 . _:genid965 "Bruker Daltonics' autoflex III smartbeam: MALDI TOF."^^ . _:genid965 "PSI:MS"^^ . . . "Bruker Daltonics' HCT Series."^^ . "MS"^^ . "MS:1000697"^^ . "Bruker Daltonics HCT Series"^^ . _:genid966 . _:genid966 . _:genid966 . _:genid966 "Bruker Daltonics' HCT Series."^^ . _:genid966 "PSI:MS"^^ . . . "Bruker Daltonics' HCTultra: ESI TOF, Nanospray, APCI, APPI."^^ . "MS"^^ . "MS:1000698"^^ . "HCTultra"^^ . _:genid967 . _:genid967 . _:genid967 . _:genid967 "Bruker Daltonics' HCTultra: ESI TOF, Nanospray, APCI, APPI."^^ . _:genid967 "PSI:MS"^^ . . . "Bruker Daltonics' HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR."^^ . "MS"^^ . "MS:1000699"^^ . "HCTultra PTM"^^ . _:genid968 . _:genid968 . _:genid968 . _:genid968 "Bruker Daltonics' HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR."^^ . _:genid968 "PSI:MS"^^ . . . "Bruker Daltonics' HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI, ETD."^^ . "MS"^^ . "MS:1000700"^^ . "HCTultra ETD II"^^ . _:genid969 . _:genid969 . _:genid969 . _:genid969 "Bruker Daltonics' HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI, ETD."^^ . _:genid969 "PSI:MS"^^ . . . "Bruker Daltonics' microflex LT: MALDI TOF."^^ . "MS"^^ . "MS:1000701"^^ . "microflex LT"^^ . _:genid970 . _:genid970 . _:genid970 . _:genid970 "Bruker Daltonics' microflex LT: MALDI TOF."^^ . _:genid970 "PSI:MS"^^ . . . "Bruker Daltonics' micrOTOF: ESI TOF, APCI, APPI."^^ . "MS"^^ . "MS:1000702"^^ . "micrOTOF"^^ . _:genid971 . _:genid971 . _:genid971 . _:genid971 "Bruker Daltonics' micrOTOF: ESI TOF, APCI, APPI."^^ . _:genid971 "PSI:MS"^^ . . . "Bruker Daltonics' micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI."^^ . "MS"^^ . "MS:1000703"^^ . "micrOTOF-Q"^^ . _:genid972 . _:genid972 . _:genid972 . _:genid972 "Bruker Daltonics' micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI."^^ . _:genid972 "PSI:MS"^^ . . . "Bruker Daltonics' micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI."^^ . "MS"^^ . "MS:1000704"^^ . "micrOTOF-Q II"^^ . _:genid973 . _:genid973 . _:genid973 . _:genid973 "Bruker Daltonics' micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI."^^ . _:genid973 "PSI:MS"^^ . . . "Bruker Daltonics' ultraflex III TOF/TOF: MALDI TOF."^^ . "MS"^^ . "MS:1000705"^^ . "ultraflex III TOF/TOF"^^ . _:genid974 . _:genid974 . _:genid974 . _:genid974 "Bruker Daltonics' ultraflex III TOF/TOF: MALDI TOF."^^ . _:genid974 "PSI:MS"^^ . . . . "Bruker software for data acquisition."^^ . "MS"^^ . "MS:1000706"^^ . "apexControl"^^ . _:genid975 . _:genid975 . _:genid975 . _:genid975 "Bruker software for data acquisition."^^ . _:genid975 "PSI:MS"^^ . . . . . "Bruker software for data analysis."^^ . "MS"^^ . "MS:1000707"^^ . "BioTools"^^ . _:genid976 . _:genid976 . _:genid976 . _:genid976 "Bruker software for data analysis."^^ . _:genid976 "PSI:MS"^^ . . . . . "Bruker CLINPROT software."^^ . "MS"^^ . "MS:1000708"^^ . "CLINPROT"^^ . _:genid977 . _:genid977 . _:genid977 . _:genid977 "Bruker CLINPROT software."^^ . _:genid977 "PSI:MS"^^ . . . . . "Bruker CLINPROT micro software."^^ . "MS"^^ . "MS:1000709"^^ . "CLINPROT micro"^^ . _:genid978 . _:genid978 . _:genid978 . _:genid978 "Bruker CLINPROT micro software."^^ . _:genid978 "PSI:MS"^^ . . . "Bruker CLINPROT robot software."^^ . "MS"^^ . "MS:1000710"^^ . "CLINPROT robot"^^ . _:genid979 . _:genid979 . _:genid979 . _:genid979 "Bruker CLINPROT robot software."^^ . _:genid979 "PSI:MS"^^ . . . "Bruker ClinProTools software."^^ . "MS"^^ . "MS:1000711"^^ . "ClinProTools"^^ . _:genid980 . _:genid980 . _:genid980 . _:genid980 "Bruker ClinProTools software."^^ . _:genid980 "PSI:MS"^^ . . . . . "Bruker Compass software."^^ . "MS"^^ . "MS:1000712"^^ . "Compass"^^ . _:genid981 . _:genid981 . _:genid981 . _:genid981 "Bruker Compass software."^^ . _:genid981 "PSI:MS"^^ . . . . . "Bruker Compass for HCT/esquire software."^^ . "MS"^^ . "MS:1000713"^^ . "Compass for HCT/esquire"^^ . _:genid982 . _:genid982 . _:genid982 . _:genid982 "Bruker Compass for HCT/esquire software."^^ . _:genid982 "PSI:MS"^^ . . . . . "Bruker Compass for micrOTOF software."^^ . "MS"^^ . "MS:1000714"^^ . "Compass for micrOTOF"^^ . _:genid983 . _:genid983 . _:genid983 . _:genid983 "Bruker Compass for micrOTOF software."^^ . _:genid983 "PSI:MS"^^ . . . . . "Bruker compass OpenAccess software."^^ . "MS"^^ . "MS:1000715"^^ . "Compass OpenAccess"^^ . _:genid984 . _:genid984 . _:genid984 . _:genid984 "Bruker compass OpenAccess software."^^ . _:genid984 "PSI:MS"^^ . . . "Bruker compass Security Pack software."^^ . "MS"^^ . "MS:1000716"^^ . "Compass Security Pack"^^ . _:genid985 . _:genid985 . _:genid985 . _:genid985 "Bruker compass Security Pack software."^^ . _:genid985 "PSI:MS"^^ . . . . "Bruker stand-alone software for data conversion."^^ . "MS"^^ . "MS:1000717"^^ . "CompassXport"^^ . _:genid986 . _:genid986 . _:genid986 . _:genid986 "Bruker stand-alone software for data conversion."^^ . _:genid986 "PSI:MS"^^ . . . . "Bruker software library for data access."^^ . "MS"^^ . "MS:1000718"^^ . "CompassXtract"^^ . _:genid987 . _:genid987 . _:genid987 . _:genid987 "Bruker software library for data access."^^ . _:genid987 "PSI:MS"^^ . . . . . "Bruker software for data analysis."^^ . "MS"^^ . "MS:1000719"^^ . "DataAnalysis"^^ . _:genid988 . _:genid988 . _:genid988 . _:genid988 "Bruker software for data analysis."^^ . _:genid988 "PSI:MS"^^ . . . . "Bruker software for data acquisition."^^ . "MS"^^ . "MS:1000720"^^ . "dpControl"^^ . _:genid989 . _:genid989 . _:genid989 . _:genid989 "Bruker software for data acquisition."^^ . _:genid989 "PSI:MS"^^ . . . . "Bruker software for data acquisition."^^ . "MS"^^ . "MS:1000721"^^ . "esquireControl"^^ . _:genid990 . _:genid990 . _:genid990 . _:genid990 "Bruker software for data acquisition."^^ . _:genid990 "PSI:MS"^^ . . . . . "Bruker software for data analysis."^^ . "MS"^^ . "MS:1000722"^^ . "flexImaging"^^ . _:genid991 . _:genid991 . _:genid991 . _:genid991 "Bruker software for data analysis."^^ . _:genid991 "PSI:MS"^^ . . . "Bruker GENOLINK software."^^ . "MS"^^ . "MS:1000723"^^ . "GENOLINK"^^ . _:genid992 . _:genid992 . _:genid992 . _:genid992 "Bruker GENOLINK software."^^ . _:genid992 "PSI:MS"^^ . . . "Bruker GenoTools software."^^ . "MS"^^ . "MS:1000724"^^ . "GenoTools"^^ . _:genid993 . _:genid993 . _:genid993 . _:genid993 "Bruker GenoTools software."^^ . _:genid993 "PSI:MS"^^ . . . . "Bruker software for data acquisition."^^ . "MS"^^ . "MS:1000725"^^ . "HCTcontrol"^^ . _:genid994 . _:genid994 . _:genid994 . _:genid994 "Bruker software for data acquisition."^^ . _:genid994 "PSI:MS"^^ . . . . "Bruker software for data acquisition."^^ . "MS"^^ . "MS:1000726"^^ . "micrOTOFcontrol"^^ . _:genid995 . _:genid995 . _:genid995 . _:genid995 "Bruker software for data acquisition."^^ . _:genid995 "PSI:MS"^^ . . . "Bruker PolyTools software."^^ . "MS"^^ . "MS:1000727"^^ . "PolyTools"^^ . _:genid996 . _:genid996 . _:genid996 . _:genid996 "Bruker PolyTools software."^^ . _:genid996 "PSI:MS"^^ . . . . . "Bruker software for data analysis."^^ . "MS"^^ . "MS:1000728"^^ . "ProfileAnalysis"^^ . _:genid997 . _:genid997 . _:genid997 . _:genid997 "Bruker software for data analysis."^^ . _:genid997 "PSI:MS"^^ . . . "Bruker PROTEINEER software."^^ . "MS"^^ . "MS:1000729"^^ . "PROTEINEER"^^ . _:genid998 . _:genid998 . _:genid998 . _:genid998 "Bruker PROTEINEER software."^^ . _:genid998 "PSI:PI"^^ . . . "Bruker PROTEINEER dp software."^^ . "MS"^^ . "MS:1000730"^^ . "PROTEINEER dp"^^ . _:genid999 . _:genid999 . _:genid999 . _:genid999 "Bruker PROTEINEER dp software."^^ . _:genid999 "PSI:PI"^^ . . . "Bruker PROTEINEER fc software."^^ . "MS"^^ . "MS:1000731"^^ . "PROTEINEER fc"^^ . _:genid1000 . _:genid1000 . _:genid1000 . _:genid1000 "Bruker PROTEINEER fc software."^^ . _:genid1000 "PSI:PI"^^ . . . "Bruker PROTEINEER spII software."^^ . "MS"^^ . "MS:1000732"^^ . "PROTEINEER spII"^^ . _:genid1001 . _:genid1001 . _:genid1001 . _:genid1001 "Bruker PROTEINEER spII software."^^ . _:genid1001 "PSI:PI"^^ . . . "Bruker PROTEINEER-LC software."^^ . "MS"^^ . "MS:1000733"^^ . "PROTEINEER-LC"^^ . _:genid1002 . _:genid1002 . _:genid1002 . _:genid1002 "Bruker PROTEINEER-LC software."^^ . _:genid1002 "PSI:PI"^^ . . . . "Bruker ProteinScape software."^^ . "MS"^^ . "MS:1000734"^^ . "ProteinScape"^^ . _:genid1003 . _:genid1003 . _:genid1003 . _:genid1003 "Bruker ProteinScape software."^^ . _:genid1003 "PSI:PI"^^ . . . "BrukerPureDisk software."^^ . "MS"^^ . "MS:1000735"^^ . "PureDisk"^^ . _:genid1004 . _:genid1004 . _:genid1004 . _:genid1004 "BrukerPureDisk software."^^ . _:genid1004 "PSI:MS"^^ . . . . . "Bruker software for data analysis."^^ . "MS"^^ . "MS:1000736"^^ . "QuantAnalysis"^^ . _:genid1005 . _:genid1005 . _:genid1005 . _:genid1005 "Bruker software for data analysis."^^ . _:genid1005 "PSI:MS"^^ . . . . "Bruker software for data acquisition."^^ . "MS"^^ . "MS:1000737"^^ . "spControl"^^ . _:genid1006 . _:genid1006 . _:genid1006 . _:genid1006 "Bruker software for data acquisition."^^ . _:genid1006 "PSI:MS"^^ . . . "Bruker TargetAnalysis software."^^ . "MS"^^ . "MS:1000738"^^ . "TargetAnalysis"^^ . _:genid1007 . _:genid1007 . _:genid1007 . _:genid1007 "Bruker TargetAnalysis software."^^ . _:genid1007 "PSI:MS"^^ . . . . "Bruker WARP-LC software."^^ . "MS"^^ . "MS:1000739"^^ . "WARP-LC"^^ . _:genid1008 . _:genid1008 . _:genid1008 . _:genid1008 "Bruker WARP-LC software."^^ . _:genid1008 "PSI:MS"^^ . . . "Parameter file used to configure the acquisition of raw data on the instrument."^^ . "MS"^^ . "MS:1000740"^^ . "parameter file"^^ . _:genid1009 . _:genid1009 . _:genid1009 . _:genid1009 "Parameter file used to configure the acquisition of raw data on the instrument."^^ . _:genid1009 "PSI:MS"^^ . . . "Conversion to dta format."^^ . "MS"^^ . "MS:1000741"^^ . "Conversion to dta"^^ . _:genid1010 . _:genid1010 . _:genid1010 . _:genid1010 "Conversion to dta format."^^ . _:genid1010 "PSI:MS"^^ . . . . "Thermo Finnigan SRF file format."^^ . "MS"^^ . "MS:1000742"^^ . "Bioworks SRF format"^^ . _:genid1011 . _:genid1011 . _:genid1011 . _:genid1011 "Thermo Finnigan SRF file format."^^ . _:genid1011 "PSI:MS"^^ . . . "Thermo Scientific TSQ Quantum Ultra AM."^^ . "MS"^^ . "MS:1000743"^^ . "TSQ Quantum Ultra AM"^^ . _:genid1012 . _:genid1012 . _:genid1012 . _:genid1012 "Thermo Scientific TSQ Quantum Ultra AM."^^ . _:genid1012 "PSI:MS"^^ . . . _:genid1013 . _:genid1013 . _:genid1013 . _:genid1013 . _:genid1014 . _:genid1014 . _:genid1014 . _:genid1014 . "Mass-to-charge ratio of an selected ion."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000744"^^ . "selected ion m/z"^^ . _:genid1015 . _:genid1015 . _:genid1015 . _:genid1015 "Mass-to-charge ratio of an selected ion."^^ . _:genid1015 "PSI:MS"^^ . _:genid1016 . _:genid1016 . _:genid1016 . _:genid1016 "value-type:xsd:float"^^ . _:genid1016 "The allowed value-type for this CV term."^^ . . . "The correction of the spectrum scan times, as used e.g. in label-free proteomics."^^ . "MS"^^ . "MS:1000745"^^ . "retention time alignment"^^ . _:genid1017 . _:genid1017 . _:genid1017 . _:genid1017 "The correction of the spectrum scan times, as used e.g. in label-free proteomics."^^ . _:genid1017 "PSI:MS"^^ . . . "The removal of very high intensity data points."^^ . "MS"^^ . "MS:1000746"^^ . "high intensity data point removal"^^ . _:genid1018 . _:genid1018 . _:genid1018 . _:genid1018 "The removal of very high intensity data points."^^ . _:genid1018 "PSI:MS"^^ . . . _:genid1019 . _:genid1019 . _:genid1019 . _:genid1019 . "The time that a data processing action was finished."^^ . "value-type:xsd:dateTime"^^ . "MS"^^ . "MS:1000747"^^ . "completion time"^^ . _:genid1020 . _:genid1020 . _:genid1020 . _:genid1020 "The time that a data processing action was finished."^^ . _:genid1020 "PSI:MS"^^ . _:genid1021 . _:genid1021 . _:genid1021 . _:genid1021 "value-type:xsd:dateTime"^^ . _:genid1021 "The allowed value-type for this CV term."^^ . . . "ThermoFinnigan SSQ 7000 MS."^^ . "MS"^^ . "MS:1000748"^^ . "SSQ 7000"^^ . _:genid1022 . _:genid1022 . _:genid1022 . _:genid1022 "ThermoFinnigan SSQ 7000 MS."^^ . _:genid1022 "PSI:MS"^^ . . . "ThermoFinnigan TSQ 7000 MS."^^ . "MS"^^ . "MS:1000749"^^ . "TSQ 7000"^^ . _:genid1023 . _:genid1023 . _:genid1023 . _:genid1023 "ThermoFinnigan TSQ 7000 MS."^^ . _:genid1023 "PSI:MS"^^ . . . "ThermoFinnigan TSQ MS."^^ . "MS"^^ . "MS:1000750"^^ . "TSQ"^^ . _:genid1024 . _:genid1024 . _:genid1024 . _:genid1024 "ThermoFinnigan TSQ MS."^^ . _:genid1024 "PSI:MS"^^ . . . "Thermo Scientific TSQ Quantum Ultra."^^ . "MS"^^ . "MS:1000751"^^ . "TSQ Quantum Ultra"^^ . _:genid1025 . _:genid1025 . _:genid1025 . _:genid1025 "Thermo Scientific TSQ Quantum Ultra."^^ . _:genid1025 "PSI:MS"^^ . . . . "TOPP (The OpenMS proteomics pipeline) software."^^ . "MS"^^ . "MS:1000752"^^ . "TOPP software"^^ . _:genid1026 . _:genid1026 . _:genid1026 . _:genid1026 "TOPP (The OpenMS proteomics pipeline) software."^^ . _:genid1026 "PSI:MS"^^ . . . "Removes the baseline from profile spectra using a top-hat filter."^^ . "MS"^^ . "MS:1000753"^^ . "BaselineFilter"^^ . _:genid1027 . _:genid1027 . _:genid1027 . _:genid1027 "Removes the baseline from profile spectra using a top-hat filter."^^ . _:genid1027 "PSI:MS"^^ . . . "Exports data from an OpenMS database to a file."^^ . "MS"^^ . "MS:1000754"^^ . "DBExporter"^^ . _:genid1028 . _:genid1028 . _:genid1028 . _:genid1028 "Exports data from an OpenMS database to a file."^^ . _:genid1028 "PSI:MS"^^ . . . "Imports data to an OpenMS database."^^ . "MS"^^ . "MS:1000755"^^ . "DBImporter"^^ . _:genid1029 . _:genid1029 . _:genid1029 . _:genid1029 "Imports data to an OpenMS database."^^ . _:genid1029 "PSI:MS"^^ . . . "Converts between different MS file formats."^^ . "MS"^^ . "MS:1000756"^^ . "FileConverter"^^ . _:genid1030 . _:genid1030 . _:genid1030 . _:genid1030 "Converts between different MS file formats."^^ . _:genid1030 "PSI:MS"^^ . . . "Extracts or manipulates portions of data from peak, feature or consensus feature files."^^ . "MS"^^ . "MS:1000757"^^ . "FileFilter"^^ . _:genid1031 . _:genid1031 . _:genid1031 . _:genid1031 "Extracts or manipulates portions of data from peak, feature or consensus feature files."^^ . _:genid1031 "PSI:MS"^^ . . . "Merges several MS files into one file."^^ . "MS"^^ . "MS:1000758"^^ . "FileMerger"^^ . _:genid1032 . _:genid1032 . _:genid1032 . _:genid1032 "Merges several MS files into one file."^^ . _:genid1032 "PSI:MS"^^ . . . "Applies an internal calibration."^^ . "MS"^^ . "MS:1000759"^^ . "InternalCalibration"^^ . _:genid1033 . _:genid1033 . _:genid1033 . _:genid1033 "Applies an internal calibration."^^ . _:genid1033 "PSI:MS"^^ . . . "OBSOLETE Corrects retention time distortions between maps."^^ . "MS"^^ . "MS:1000760"^^ . "This term was made obsolete, because it is replaced by the terms under the 'TOPP map aligner' (MS:1002147) branch."^^ . "MapAligner"^^ . "true"^^ . _:genid1034 . _:genid1034 . _:genid1034 . _:genid1034 "OBSOLETE Corrects retention time distortions between maps."^^ . _:genid1034 "PSI:MS"^^ . . . "Normalizes peak intensities in an MS run."^^ . "MS"^^ . "MS:1000761"^^ . "MapNormalizer"^^ . _:genid1035 . _:genid1035 . _:genid1035 . _:genid1035 "Normalizes peak intensities in an MS run."^^ . _:genid1035 "PSI:MS"^^ . . . "OBSOLETE Removes noise from profile spectra by using different smoothing techniques."^^ . "MS"^^ . "MS:1000762"^^ . "This term was made obsolete, because it is replaced by the terms under the 'TOPP noise filter' (MS:1002131) branch."^^ . "NoiseFilter"^^ . "true"^^ . _:genid1036 . _:genid1036 . _:genid1036 . _:genid1036 "OBSOLETE Removes noise from profile spectra by using different smoothing techniques."^^ . _:genid1036 "PSI:MS"^^ . . . "OBSOLETE Finds mass spectrometric peaks in profile mass spectra."^^ . "MS"^^ . "MS:1000763"^^ . "This term was made obsolete, because it is replaced by the terms under the 'TOPP peak picker' (MS:1002134) branch."^^ . "PeakPicker"^^ . "true"^^ . _:genid1037 . _:genid1037 . _:genid1037 . _:genid1037 "OBSOLETE Finds mass spectrometric peaks in profile mass spectra."^^ . _:genid1037 "PSI:MS"^^ . . . "Transforms an LC/MS map into a resampled map or a png image."^^ . "MS"^^ . "MS:1000764"^^ . "Resampler"^^ . _:genid1038 . _:genid1038 . _:genid1038 . _:genid1038 "Transforms an LC/MS map into a resampled map or a png image."^^ . _:genid1038 "PSI:MS"^^ . . . "OBSOLETE Applies a filter to peak spectra."^^ . "MS"^^ . "MS:1000765"^^ . "This term was made obsolete, because it is replaced by the terms under the 'TOPP spectra filter' (MS:1002137) branch."^^ . "SpectraFilter"^^ . "true"^^ . _:genid1039 . _:genid1039 . _:genid1039 . _:genid1039 "OBSOLETE Applies a filter to peak spectra."^^ . _:genid1039 "PSI:MS"^^ . . . "Applies time of flight calibration."^^ . "MS"^^ . "MS:1000766"^^ . "TOFCalibration"^^ . _:genid1040 . _:genid1040 . _:genid1040 . _:genid1040 "Applies time of flight calibration."^^ . _:genid1040 "PSI:MS"^^ . . _:genid1041 . _:genid1041 . _:genid1041 . _:genid1041 . "Describes how the native spectrum identifiers are formated."^^ . "nativeID format"^^ . "MS"^^ . "MS:1000767"^^ . "native spectrum identifier format"^^ . _:genid1042 . _:genid1042 . _:genid1042 . _:genid1042 "Describes how the native spectrum identifiers are formated."^^ . _:genid1042 "PSI:MS"^^ . . . "Native format defined by controllerType=xsd:nonNegativeInteger controllerNumber=xsd:positiveInteger scan=xsd:positiveInteger."^^ . "MS"^^ . "MS:1000768"^^ . "Thermo nativeID format"^^ . _:genid1043 . _:genid1043 . _:genid1043 . _:genid1043 "Native format defined by controllerType=xsd:nonNegativeInteger controllerNumber=xsd:positiveInteger scan=xsd:positiveInteger."^^ . _:genid1043 "PSI:MS"^^ . . . "Native format defined by function=xsd:positiveInteger process=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger."^^ . "MS"^^ . "MS:1000769"^^ . "Waters nativeID format"^^ . _:genid1044 . _:genid1044 . _:genid1044 . _:genid1044 "Native format defined by function=xsd:positiveInteger process=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger."^^ . _:genid1044 "PSI:MS"^^ . . . "Native format defined by sample=xsd:nonNegativeInteger period=xsd:nonNegativeInteger cycle=xsd:nonNegativeInteger experiment=xsd:nonNegativeInteger."^^ . "MS"^^ . "MS:1000770"^^ . "WIFF nativeID format"^^ . _:genid1045 . _:genid1045 . _:genid1045 . _:genid1045 "Native format defined by sample=xsd:nonNegativeInteger period=xsd:nonNegativeInteger cycle=xsd:nonNegativeInteger experiment=xsd:nonNegativeInteger."^^ . _:genid1045 "PSI:MS"^^ . . . "Native format defined by scan=xsd:nonNegativeInteger."^^ . "MS"^^ . "MS:1000771"^^ . "Bruker/Agilent YEP nativeID format"^^ . _:genid1046 . _:genid1046 . _:genid1046 . _:genid1046 "Native format defined by scan=xsd:nonNegativeInteger."^^ . _:genid1046 "PSI:MS"^^ . . . "Native format defined by scan=xsd:nonNegativeInteger."^^ . "MS"^^ . "MS:1000772"^^ . "Bruker BAF nativeID format"^^ . _:genid1047 . _:genid1047 . _:genid1047 . _:genid1047 "Native format defined by scan=xsd:nonNegativeInteger."^^ . _:genid1047 "PSI:MS"^^ . . . "Native format defined by file=xsd:IDREF."^^ . "MS"^^ . "MS:1000773"^^ . "The nativeID must be the same as the source file ID."^^ . "Bruker FID nativeID format"^^ . _:genid1048 . _:genid1048 . _:genid1048 . _:genid1048 "Native format defined by file=xsd:IDREF."^^ . _:genid1048 "PSI:MS"^^ . . . "Native format defined by index=xsd:nonNegativeInteger."^^ . "MS"^^ . "MS:1000774"^^ . "Used for conversion of peak list files with multiple spectra, i.e. MGF, PKL, merged DTA files. Index is the spectrum number in the file, starting from 0."^^ . "multiple peak list nativeID format"^^ . _:genid1049 . _:genid1049 . _:genid1049 . _:genid1049 "Native format defined by index=xsd:nonNegativeInteger."^^ . _:genid1049 "PSI:MS"^^ . . . "Native format defined by file=xsd:IDREF."^^ . "MS"^^ . "MS:1000775"^^ . "The nativeID must be the same as the source file ID. Used for conversion of peak list files with one spectrum per file, typically folder of PKL or DTAs, each sourceFileRef is different."^^ . "single peak list nativeID format"^^ . _:genid1050 . _:genid1050 . _:genid1050 . _:genid1050 "Native format defined by file=xsd:IDREF."^^ . _:genid1050 "PSI:MS"^^ . . . "Native format defined by scan=xsd:nonNegativeInteger."^^ . "MS"^^ . "MS:1000776"^^ . "Used for conversion from mzXML, or DTA folder where native scan numbers can be derived."^^ . "scan number only nativeID format"^^ . _:genid1051 . _:genid1051 . _:genid1051 . _:genid1051 "Native format defined by scan=xsd:nonNegativeInteger."^^ . _:genid1051 "PSI:MS"^^ . . . "Native format defined by spectrum=xsd:nonNegativeInteger."^^ . "MS"^^ . "MS:1000777"^^ . "Used for conversion from mzData. The spectrum id attribute is referenced."^^ . "spectrum identifier nativeID format"^^ . _:genid1052 . _:genid1052 . _:genid1052 . _:genid1052 "Native format defined by spectrum=xsd:nonNegativeInteger."^^ . _:genid1052 "PSI:MS"^^ . . . "A process that infers the charge state of an MSn spectrum's precursor(s) by the application of some algorithm."^^ . "MS"^^ . "MS:1000778"^^ . "charge state calculation"^^ . _:genid1053 . _:genid1053 . _:genid1053 . _:genid1053 "A process that infers the charge state of an MSn spectrum's precursor(s) by the application of some algorithm."^^ . _:genid1053 "PSI:MS"^^ . . . "Infers charge state as single or ambiguously multiple by determining the fraction of intensity below the precursor m/z."^^ . "MS"^^ . "MS:1000779"^^ . "below precursor intensity dominance charge state calculation"^^ . _:genid1054 . _:genid1054 . _:genid1054 . _:genid1054 "Infers charge state as single or ambiguously multiple by determining the fraction of intensity below the precursor m/z."^^ . _:genid1054 "PSI:MS"^^ . . . "A process that recalculates existing precursor selected ions with one or more algorithmically determined precursor selected ions."^^ . "MS"^^ . "MS:1000780"^^ . "precursor recalculation"^^ . _:genid1055 . _:genid1055 . _:genid1055 . _:genid1055 "A process that recalculates existing precursor selected ions with one or more algorithmically determined precursor selected ions."^^ . _:genid1055 "PSI:MS"^^ . . . "Recalculates one or more precursor selected ions by peak detection in the isolation windows of high accuracy MS precursor scans."^^ . "MS"^^ . "MS:1000781"^^ . "msPrefix precursor recalculation"^^ . _:genid1056 . _:genid1056 . _:genid1056 . _:genid1056 "Recalculates one or more precursor selected ions by peak detection in the isolation windows of high accuracy MS precursor scans."^^ . _:genid1056 "PSI:MS"^^ . . . "Reduces intensity spikes by applying local polynomial regression (of degree k) on a distribution (of at least k+1 equally spaced points) to determine the smoothed value for each point. It tends to preserve features of the distribution such as relative maxima, minima and width, which are usually 'flattened' by other adjacent averaging techniques."^^ . "MS"^^ . "MS:1000782"^^ . "Savitzky-Golay smoothing"^^ . _:genid1057 . _:genid1057 . _:genid1057 . _:genid1057 "Reduces intensity spikes by applying local polynomial regression (of degree k) on a distribution (of at least k+1 equally spaced points) to determine the smoothed value for each point. It tends to preserve features of the distribution such as relative maxima, minima and width, which are usually 'flattened' by other adjacent averaging techniques."^^ . _:genid1057 "PSI:MS"^^ . . . "Reduces intensity spikes by applying a modelling method known as locally weighted polynomial regression. At each point in the data set a low-degree polynomial is fit to a subset of the data, with explanatory variable values near the point whose response is being estimated. The polynomial is fit using weighted least squares, giving more weight to points near the point whose response is being estimated and less weight to points further away. The value of the regression function for the point is then obtained by evaluating the local polynomial using the explanatory variable values for that data point. The LOESS fit is complete after regression function values have been computed for each of the n data points. Many of the details of this method, such as the degree of the polynomial model and the weights, are flexible."^^ . "MS"^^ . "MS:1000783"^^ . "LOWESS smoothing"^^ . _:genid1058 . _:genid1058 . _:genid1058 . _:genid1058 "Reduces intensity spikes by applying a modelling method known as locally weighted polynomial regression. At each point in the data set a low-degree polynomial is fit to a subset of the data, with explanatory variable values near the point whose response is being estimated. The polynomial is fit using weighted least squares, giving more weight to points near the point whose response is being estimated and less weight to points further away. The value of the regression function for the point is then obtained by evaluating the local polynomial using the explanatory variable values for that data point. The LOESS fit is complete after regression function values have been computed for each of the n data points. Many of the details of this method, such as the degree of the polynomial model and the weights, are flexible."^^ . _:genid1058 "PSI:MS"^^ . . . "Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function."^^ . "Weierstrass transform"^^ . "binomial smoothing"^^ . "MS"^^ . "MS:1000784"^^ . "Gaussian smoothing"^^ . _:genid1059 . _:genid1059 . _:genid1059 . _:genid1059 "Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function."^^ . _:genid1059 "PSI:MS"^^ . . . "Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect."^^ . "box smoothing"^^ . "boxcar smoothing"^^ . "sliding average smoothing"^^ . "MS"^^ . "MS:1000785"^^ . "moving average smoothing"^^ . _:genid1060 . _:genid1060 . _:genid1060 . _:genid1060 "Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect."^^ . _:genid1060 "PSI:MS"^^ . . . _:genid1061 . _:genid1061 . _:genid1061 . _:genid1061 . "A data array that contains data not covered by any other term in this group. Please do not use this term, if the binary data array type might be commonly used - contact the PSI-MS working group in order to have another CV term added."^^ . "binary-data-type:MS:1000519"^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000522"^^ . "binary-data-type:MS:1000523"^^ . "binary-data-type:MS:1001479"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000786"^^ . "non-standard data array"^^ . _:genid1062 . _:genid1062 . _:genid1062 . _:genid1062 "A data array that contains data not covered by any other term in this group. Please do not use this term, if the binary data array type might be commonly used - contact the PSI-MS working group in order to have another CV term added."^^ . _:genid1062 "PSI:MS"^^ . _:genid1063 . _:genid1063 . _:genid1063 . _:genid1063 "binary-data-type:MS:1000519"^^ . _:genid1063 "32-bit integer"^^ . _:genid1064 . _:genid1064 . _:genid1064 . _:genid1064 "binary-data-type:MS:1000521"^^ . _:genid1064 "32-bit float"^^ . _:genid1065 . _:genid1065 . _:genid1065 . _:genid1065 "binary-data-type:MS:1000522"^^ . _:genid1065 "64-bit integer"^^ . _:genid1066 . _:genid1066 . _:genid1066 . _:genid1066 "binary-data-type:MS:1000523"^^ . _:genid1066 "64-bit float"^^ . _:genid1067 . _:genid1067 . _:genid1067 . _:genid1067 "binary-data-type:MS:1001479"^^ . _:genid1067 "null-terminated ASCII string"^^ . _:genid1068 . _:genid1068 . _:genid1068 . _:genid1068 "value-type:xsd:string"^^ . _:genid1068 "The allowed value-type for this CV term."^^ . . . _:genid1069 . _:genid1069 . _:genid1069 . _:genid1069 . _:genid1070 . _:genid1070 . _:genid1070 . _:genid1070 . _:genid1071 . _:genid1071 . _:genid1071 . _:genid1071 . _:genid1072 . _:genid1072 . _:genid1072 . _:genid1072 . _:genid1073 . _:genid1073 . _:genid1073 . _:genid1073 . _:genid1074 . _:genid1074 . _:genid1074 . _:genid1074 . "Threshold at or below which some action is taken."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000787"^^ . "inclusive low intensity threshold"^^ . _:genid1075 . _:genid1075 . _:genid1075 . _:genid1075 "Threshold at or below which some action is taken."^^ . _:genid1075 "PSI:MS"^^ . _:genid1076 . _:genid1076 . _:genid1076 . _:genid1076 "value-type:xsd:float"^^ . _:genid1076 "The allowed value-type for this CV term."^^ . . . _:genid1077 . _:genid1077 . _:genid1077 . _:genid1077 . _:genid1078 . _:genid1078 . _:genid1078 . _:genid1078 . _:genid1079 . _:genid1079 . _:genid1079 . _:genid1079 . _:genid1080 . _:genid1080 . _:genid1080 . _:genid1080 . _:genid1081 . _:genid1081 . _:genid1081 . _:genid1081 . _:genid1082 . _:genid1082 . _:genid1082 . _:genid1082 . "Threshold at or above which some action is taken."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000788"^^ . "inclusive high intensity threshold"^^ . _:genid1083 . _:genid1083 . _:genid1083 . _:genid1083 "Threshold at or above which some action is taken."^^ . _:genid1083 "PSI:MS"^^ . _:genid1084 . _:genid1084 . _:genid1084 . _:genid1084 "value-type:xsd:float"^^ . _:genid1084 "The allowed value-type for this CV term."^^ . . . "MS1 spectrum that is enriched in multiply-charged ions compared to singly-charged ions."^^ . "MS"^^ . "MS:1000789"^^ . "enhanced multiply charged spectrum"^^ . _:genid1085 . _:genid1085 . _:genid1085 . _:genid1085 "MS1 spectrum that is enriched in multiply-charged ions compared to singly-charged ions."^^ . _:genid1085 "PSI:MS"^^ . . . "MSn spectrum in which the product ions are collected after a time delay, which allows the observation of lower energy fragmentation processes after precursor ion activation."^^ . "MS"^^ . "MS:1000790"^^ . "time-delayed fragmentation spectrum"^^ . _:genid1086 . _:genid1086 . _:genid1086 . _:genid1086 "MSn spectrum in which the product ions are collected after a time delay, which allows the observation of lower energy fragmentation processes after precursor ion activation."^^ . _:genid1086 "PSI:MS"^^ . . "OBSOLETE Scan with enhanced resolution."^^ . "MS"^^ . "MS:1000791"^^ . "This term was made obsolete because it was merged with zoom scan (MS:1000497)."^^ . "enhanced resolution scan"^^ . "true"^^ . _:genid1087 . _:genid1087 . _:genid1087 . _:genid1087 "OBSOLETE Scan with enhanced resolution."^^ . _:genid1087 "PSI:MS"^^ . . . _:genid1088 . _:genid1088 . _:genid1088 . _:genid1088 . "Isolation window parameter."^^ . "MS"^^ . "MS:1000792"^^ . "isolation window attribute"^^ . _:genid1089 . _:genid1089 . _:genid1089 . _:genid1089 "Isolation window parameter."^^ . _:genid1089 "PSI:MS"^^ . . . _:genid1090 . _:genid1090 . _:genid1090 . _:genid1090 . _:genid1091 . _:genid1091 . _:genid1091 . _:genid1091 . "OBSOLETE The highest m/z being isolated in an isolation window."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000793"^^ . "This term was obsoleted in favour of using a target, lower, upper offset scheme. See terms 1000827-1000829."^^ . "isolation window upper limit"^^ . "true"^^ . _:genid1092 . _:genid1092 . _:genid1092 . _:genid1092 "OBSOLETE The highest m/z being isolated in an isolation window."^^ . _:genid1092 "PSI:MS"^^ . _:genid1093 . _:genid1093 . _:genid1093 . _:genid1093 "value-type:xsd:float"^^ . _:genid1093 "The allowed value-type for this CV term."^^ . . . _:genid1094 . _:genid1094 . _:genid1094 . _:genid1094 . _:genid1095 . _:genid1095 . _:genid1095 . _:genid1095 . "OBSOLETE The lowest m/z being isolated in an isolation window."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000794"^^ . "This term was obsoleted in favour of using a target, lower, upper offset scheme. See terms 1000827-1000829."^^ . "isolation window lower limit"^^ . "true"^^ . _:genid1096 . _:genid1096 . _:genid1096 . _:genid1096 "OBSOLETE The lowest m/z being isolated in an isolation window."^^ . _:genid1096 "PSI:MS"^^ . _:genid1097 . _:genid1097 . _:genid1097 . _:genid1097 "value-type:xsd:float"^^ . _:genid1097 "The allowed value-type for this CV term."^^ . . . "Use this term if only one scan was recorded or there is no information about scans available."^^ . "MS"^^ . "MS:1000795"^^ . "no combination"^^ . _:genid1098 . _:genid1098 . _:genid1098 . _:genid1098 "Use this term if only one scan was recorded or there is no information about scans available."^^ . _:genid1098 "PSI:MS"^^ . . . . _:genid1099 . _:genid1099 . _:genid1099 . _:genid1099 . "Free-form text title describing a spectrum, usually a series of key value pairs as used in an MGF file."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000796"^^ . "This is the preferred storage place for the spectrum TITLE from an MGF peak list."^^ . "spectrum title"^^ . _:genid1100 . _:genid1100 . _:genid1100 . _:genid1100 "Free-form text title describing a spectrum, usually a series of key value pairs as used in an MGF file."^^ . _:genid1100 "PSI:MS"^^ . _:genid1101 . _:genid1101 . _:genid1101 . _:genid1101 "value-type:xsd:string"^^ . _:genid1101 "The allowed value-type for this CV term."^^ . . . . _:genid1102 . _:genid1102 . _:genid1102 . _:genid1102 . "A list of scan numbers and or scan ranges associated with a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000797"^^ . "This is the preferred storage place for the spectrum SCANS attribute from an MGF peak list."^^ . "peak list scans"^^ . _:genid1103 . _:genid1103 . _:genid1103 . _:genid1103 "A list of scan numbers and or scan ranges associated with a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term."^^ . _:genid1103 "PSI:MS"^^ . _:genid1104 . _:genid1104 . _:genid1104 . _:genid1104 "value-type:xsd:string"^^ . _:genid1104 "The allowed value-type for this CV term."^^ . . . . _:genid1105 . _:genid1105 . _:genid1105 . _:genid1105 . "A list of raw scans and or scan ranges used to generate a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000798"^^ . "This is the preferred storage place for the spectrum RAWSCANS attribute from an MGF peak list."^^ . "peak list raw scans"^^ . _:genid1106 . _:genid1106 . _:genid1106 . _:genid1106 "A list of raw scans and or scan ranges used to generate a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term."^^ . _:genid1106 "PSI:MS"^^ . _:genid1107 . _:genid1107 . _:genid1107 . _:genid1107 "value-type:xsd:string"^^ . _:genid1107 "The allowed value-type for this CV term."^^ . . . _:genid1108 . _:genid1108 . _:genid1108 . _:genid1108 . "A software tool that has not yet been released. The value should describe the software. Please do not use this term for publicly available software - contact the PSI-MS working group in order to have another CV term added."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000799"^^ . "custom unreleased software tool"^^ . _:genid1109 . _:genid1109 . _:genid1109 . _:genid1109 "A software tool that has not yet been released. The value should describe the software. Please do not use this term for publicly available software - contact the PSI-MS working group in order to have another CV term added."^^ . _:genid1109 "PSI:MS"^^ . _:genid1110 . _:genid1110 . _:genid1110 . _:genid1110 "value-type:xsd:string"^^ . _:genid1110 "The allowed value-type for this CV term."^^ . . . _:genid1111 . _:genid1111 . _:genid1111 . _:genid1111 . "The observed mass divided by the difference between two masses that can be separated: m/dm. The procedure by which dm was obtained and the mass at which the measurement was made should be reported."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000800"^^ . "mass resolving power"^^ . _:genid1112 . _:genid1112 . _:genid1112 . _:genid1112 "The observed mass divided by the difference between two masses that can be separated: m/dm. The procedure by which dm was obtained and the mass at which the measurement was made should be reported."^^ . _:genid1112 "PSI:MS"^^ . _:genid1113 . _:genid1113 . _:genid1113 . _:genid1113 "value-type:xsd:string"^^ . _:genid1113 "The allowed value-type for this CV term."^^ . . . "Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported."^^ . "sum peak picking"^^ . "MS"^^ . "MS:1000801"^^ . "area peak picking"^^ . _:genid1114 . _:genid1114 . _:genid1114 . _:genid1114 "Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported."^^ . _:genid1114 "PSI:MS"^^ . . . "Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported."^^ . "max peak picking"^^ . "MS"^^ . "MS:1000802"^^ . "height peak picking"^^ . _:genid1115 . _:genid1115 . _:genid1115 . _:genid1115 "Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported."^^ . _:genid1115 "PSI:MS"^^ . . . _:genid1116 . _:genid1116 . _:genid1116 . _:genid1116 . _:genid1117 . _:genid1117 . _:genid1117 . _:genid1117 . "Offset between two analyzers in a constant neutral loss or neutral gain scan. The value corresponds to the neutral loss or neutral gain value."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000803"^^ . "analyzer scan offset"^^ . _:genid1118 . _:genid1118 . _:genid1118 . _:genid1118 "Offset between two analyzers in a constant neutral loss or neutral gain scan. The value corresponds to the neutral loss or neutral gain value."^^ . _:genid1118 "PSI:MS"^^ . _:genid1119 . _:genid1119 . _:genid1119 . _:genid1119 "value-type:xsd:float"^^ . _:genid1119 "The allowed value-type for this CV term."^^ . . . . "A plot of the relative intensity of electromagnetic radiation as a function of the wavelength."^^ . "EMR spectrum"^^ . "MS"^^ . "MS:1000804"^^ . "electromagnetic radiation spectrum"^^ . _:genid1120 . _:genid1120 . _:genid1120 . _:genid1120 "A plot of the relative intensity of electromagnetic radiation as a function of the wavelength."^^ . _:genid1120 "PSI:MS"^^ . . . . "A plot of the relative intensity of electromagnetic radiation emitted by atoms or molecules when excited."^^ . "MS"^^ . "MS:1000805"^^ . "emission spectrum"^^ . _:genid1121 . _:genid1121 . _:genid1121 . _:genid1121 "A plot of the relative intensity of electromagnetic radiation emitted by atoms or molecules when excited."^^ . _:genid1121 "PSI:MS"^^ . . . . "A plot of the relative intensity of electromagnetic radiation absorbed by atoms or molecules when excited."^^ . "MS"^^ . "MS:1000806"^^ . "absorption spectrum"^^ . _:genid1122 . _:genid1122 . _:genid1122 . _:genid1122 "A plot of the relative intensity of electromagnetic radiation absorbed by atoms or molecules when excited."^^ . _:genid1122 "PSI:MS"^^ . . . "Unit describing the scan rate of a spectrum in Thomson per second."^^ . "MS"^^ . "MS:1000807"^^ . "Th/s"^^ . _:genid1123 . _:genid1123 . _:genid1123 . _:genid1123 "Unit describing the scan rate of a spectrum in Thomson per second."^^ . _:genid1123 "PSI:MS"^^ . . . _:genid1124 . _:genid1124 . _:genid1124 . _:genid1124 . "Chromatogram properties that are associated with a value."^^ . "MS"^^ . "MS:1000808"^^ . "chromatogram attribute"^^ . _:genid1125 . _:genid1125 . _:genid1125 . _:genid1125 "Chromatogram properties that are associated with a value."^^ . _:genid1125 "PSI:MS"^^ . . . _:genid1126 . _:genid1126 . _:genid1126 . _:genid1126 . "A free-form text title describing a chromatogram."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000809"^^ . "This is the preferred storage place for the spectrum title."^^ . "chromatogram title"^^ . _:genid1127 . _:genid1127 . _:genid1127 . _:genid1127 "A free-form text title describing a chromatogram."^^ . _:genid1127 "PSI:MS"^^ . _:genid1128 . _:genid1128 . _:genid1128 . _:genid1128 "value-type:xsd:string"^^ . _:genid1128 "The allowed value-type for this CV term."^^ . . . . "Representation of the current of ions versus time."^^ . "MS"^^ . "MS:1000810"^^ . "ion current chromatogram"^^ . _:genid1129 . _:genid1129 . _:genid1129 . _:genid1129 "Representation of the current of ions versus time."^^ . _:genid1129 "PSI:MS"^^ . . . . "Representation of electromagnetic properties versus time."^^ . "EMR radiation chromatogram"^^ . "MS"^^ . "MS:1000811"^^ . "electromagnetic radiation chromatogram"^^ . _:genid1130 . _:genid1130 . _:genid1130 . _:genid1130 "Representation of electromagnetic properties versus time."^^ . _:genid1130 "PSI:MS"^^ . . . "Representation of light absorbed by the sample versus time."^^ . "MS"^^ . "MS:1000812"^^ . "absorption chromatogram"^^ . _:genid1131 . _:genid1131 . _:genid1131 . _:genid1131 "Representation of light absorbed by the sample versus time."^^ . _:genid1131 "PSI:MS"^^ . . . "Representation of light emitted by the sample versus time."^^ . "MS"^^ . "MS:1000813"^^ . "emission chromatogram"^^ . _:genid1132 . _:genid1132 . _:genid1132 . _:genid1132 "Representation of light emitted by the sample versus time."^^ . _:genid1132 "PSI:MS"^^ . . . "The number of counted events observed per second in one or a group of elements of a detector."^^ . "MS"^^ . "MS:1000814"^^ . "counts per second"^^ . _:genid1133 . _:genid1133 . _:genid1133 . _:genid1133 "The number of counted events observed per second in one or a group of elements of a detector."^^ . _:genid1133 "PSI:MS"^^ . . . "Bruker BAF raw file format."^^ . "MS"^^ . "MS:1000815"^^ . "Bruker BAF format"^^ . _:genid1134 . _:genid1134 . _:genid1134 . _:genid1134 "Bruker BAF raw file format."^^ . _:genid1134 "PSI:MS"^^ . . . "Bruker HyStar U2 file format."^^ . "MS"^^ . "MS:1000816"^^ . "Bruker U2 format"^^ . _:genid1135 . _:genid1135 . _:genid1135 . _:genid1135 "Bruker HyStar U2 file format."^^ . _:genid1135 "PSI:MS"^^ . . . "Bruker software for hyphenated experiments."^^ . "MS"^^ . "MS:1000817"^^ . "HyStar"^^ . _:genid1136 . _:genid1136 . _:genid1136 . _:genid1136 "Bruker software for hyphenated experiments."^^ . _:genid1136 "PSI:MS"^^ . . . . "Acquity UPLC Photodiode Array Detector."^^ . "MS"^^ . "MS:1000818"^^ . "Acquity UPLC PDA"^^ . _:genid1137 . _:genid1137 . _:genid1137 . _:genid1137 "Acquity UPLC Photodiode Array Detector."^^ . _:genid1137 "PSI:MS"^^ . . . . "Acquity UPLC Fluorescence Detector."^^ . "MS"^^ . "MS:1000819"^^ . "Acquity UPLC FLR"^^ . _:genid1138 . _:genid1138 . _:genid1138 . _:genid1138 "Acquity UPLC Fluorescence Detector."^^ . _:genid1138 "PSI:MS"^^ . . . _:genid1139 . _:genid1139 . _:genid1139 . _:genid1139 . "A data array of flow rate measurements."^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000523"^^ . "MS"^^ . "MS:1000820"^^ . "flow rate array"^^ . _:genid1140 . _:genid1140 . _:genid1140 . _:genid1140 "A data array of flow rate measurements."^^ . _:genid1140 "PSI:MS"^^ . _:genid1141 . _:genid1141 . _:genid1141 . _:genid1141 "binary-data-type:MS:1000521"^^ . _:genid1141 "32-bit float"^^ . _:genid1142 . _:genid1142 . _:genid1142 . _:genid1142 "binary-data-type:MS:1000523"^^ . _:genid1142 "64-bit float"^^ . . . _:genid1143 . _:genid1143 . _:genid1143 . _:genid1143 . "A data array of pressure measurements."^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000523"^^ . "MS"^^ . "MS:1000821"^^ . "pressure array"^^ . _:genid1144 . _:genid1144 . _:genid1144 . _:genid1144 "A data array of pressure measurements."^^ . _:genid1144 "PSI:MS"^^ . _:genid1145 . _:genid1145 . _:genid1145 . _:genid1145 "binary-data-type:MS:1000521"^^ . _:genid1145 "32-bit float"^^ . _:genid1146 . _:genid1146 . _:genid1146 . _:genid1146 "binary-data-type:MS:1000523"^^ . _:genid1146 "64-bit float"^^ . . . _:genid1147 . _:genid1147 . _:genid1147 . _:genid1147 . "A data array of temperature measurements."^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000523"^^ . "MS"^^ . "MS:1000822"^^ . "temperature array"^^ . _:genid1148 . _:genid1148 . _:genid1148 . _:genid1148 "A data array of temperature measurements."^^ . _:genid1148 "PSI:MS"^^ . _:genid1149 . _:genid1149 . _:genid1149 . _:genid1149 "binary-data-type:MS:1000521"^^ . _:genid1149 "32-bit float"^^ . _:genid1150 . _:genid1150 . _:genid1150 . _:genid1150 "binary-data-type:MS:1000523"^^ . _:genid1150 "64-bit float"^^ . . . "Native format defined by declaration=xsd:nonNegativeInteger collection=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger."^^ . "MS"^^ . "MS:1000823"^^ . "Bruker U2 nativeID format"^^ . _:genid1151 . _:genid1151 . _:genid1151 . _:genid1151 "Native format defined by declaration=xsd:nonNegativeInteger collection=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger."^^ . _:genid1151 "PSI:MS"^^ . . . "No nativeID format indicates that the file tagged with this term does not contain spectra that can have a nativeID format."^^ . "MS"^^ . "MS:1000824"^^ . "no nativeID format"^^ . _:genid1152 . _:genid1152 . _:genid1152 . _:genid1152 "No nativeID format indicates that the file tagged with this term does not contain spectra that can have a nativeID format."^^ . _:genid1152 "PSI:MS"^^ . . . "Bruker FID file format."^^ . "MS"^^ . "MS:1000825"^^ . "Bruker FID format"^^ . _:genid1153 . _:genid1153 . _:genid1153 . _:genid1153 "Bruker FID file format."^^ . _:genid1153 "PSI:MS"^^ . . . _:genid1154 . _:genid1154 . _:genid1154 . _:genid1154 . _:genid1155 . _:genid1155 . _:genid1155 . _:genid1155 . _:genid1156 . _:genid1156 . _:genid1156 . _:genid1156 . "The time of elution from all used chromatographic columns (one or more) in the chromatographic separation step, relative to the start of the chromatography."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000826"^^ . "elution time"^^ . _:genid1157 . _:genid1157 . _:genid1157 . _:genid1157 "The time of elution from all used chromatographic columns (one or more) in the chromatographic separation step, relative to the start of the chromatography."^^ . _:genid1157 "PSI:MS"^^ . _:genid1158 . _:genid1158 . _:genid1158 . _:genid1158 "value-type:xsd:float"^^ . _:genid1158 "The allowed value-type for this CV term."^^ . . . _:genid1159 . _:genid1159 . _:genid1159 . _:genid1159 . _:genid1160 . _:genid1160 . _:genid1160 . _:genid1160 . "The primary or reference m/z about which the isolation window is defined."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000827"^^ . "isolation window target m/z"^^ . _:genid1161 . _:genid1161 . _:genid1161 . _:genid1161 "The primary or reference m/z about which the isolation window is defined."^^ . _:genid1161 "PSI:MS"^^ . _:genid1162 . _:genid1162 . _:genid1162 . _:genid1162 "value-type:xsd:float"^^ . _:genid1162 "The allowed value-type for this CV term."^^ . . . _:genid1163 . _:genid1163 . _:genid1163 . _:genid1163 . _:genid1164 . _:genid1164 . _:genid1164 . _:genid1164 . "The extent of the isolation window in m/z below the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000828"^^ . "isolation window lower offset"^^ . _:genid1165 . _:genid1165 . _:genid1165 . _:genid1165 "The extent of the isolation window in m/z below the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z."^^ . _:genid1165 "PSI:MS"^^ . _:genid1166 . _:genid1166 . _:genid1166 . _:genid1166 "value-type:xsd:float"^^ . _:genid1166 "The allowed value-type for this CV term."^^ . . . _:genid1167 . _:genid1167 . _:genid1167 . _:genid1167 . _:genid1168 . _:genid1168 . _:genid1168 . _:genid1168 . "The extent of the isolation window in m/z above the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000829"^^ . "isolation window upper offset"^^ . _:genid1169 . _:genid1169 . _:genid1169 . _:genid1169 "The extent of the isolation window in m/z above the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z."^^ . _:genid1169 "PSI:MS"^^ . _:genid1170 . _:genid1170 . _:genid1170 . _:genid1170 "value-type:xsd:float"^^ . _:genid1170 "The allowed value-type for this CV term."^^ . . . _:genid1171 . _:genid1171 . _:genid1171 . _:genid1171 . "Properties of the preparation steps which took place before the measurement was performed."^^ . "MS"^^ . "MS:1000831"^^ . "sample preparation"^^ . _:genid1172 . _:genid1172 . _:genid1172 . _:genid1172 "Properties of the preparation steps which took place before the measurement was performed."^^ . _:genid1172 "PSI:MS"^^ . . _:genid1173 . _:genid1173 . _:genid1173 . _:genid1173 . "Attributes to describe the technique how the sample is prepared with the matrix solution."^^ . "MS"^^ . "MS:1000832"^^ . "MALDI matrix application"^^ . _:genid1174 . _:genid1174 . _:genid1174 . _:genid1174 "Attributes to describe the technique how the sample is prepared with the matrix solution."^^ . _:genid1174 "PSI:MS"^^ . . _:genid1175 . _:genid1175 . _:genid1175 . _:genid1175 . "Describes the technique how the matrix is put on the sample target."^^ . "MS"^^ . "MS:1000833"^^ . "matrix application type"^^ . _:genid1176 . _:genid1176 . _:genid1176 . _:genid1176 "Describes the technique how the matrix is put on the sample target."^^ . _:genid1176 "PSI:MS"^^ . . . _:genid1177 . _:genid1177 . _:genid1177 . _:genid1177 . "Describes the chemical solution used as matrix."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000834"^^ . "matrix solution"^^ . _:genid1178 . _:genid1178 . _:genid1178 . _:genid1178 "Describes the chemical solution used as matrix."^^ . _:genid1178 "PSI:MS"^^ . _:genid1179 . _:genid1179 . _:genid1179 . _:genid1179 "value-type:xsd:string"^^ . _:genid1179 "The allowed value-type for this CV term."^^ . . . _:genid1180 . _:genid1180 . _:genid1180 . _:genid1180 . _:genid1181 . _:genid1181 . _:genid1181 . _:genid1181 . "Concentration of the chemical solution used as matrix."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000835"^^ . "matrix solution concentration"^^ . _:genid1182 . _:genid1182 . _:genid1182 . _:genid1182 "Concentration of the chemical solution used as matrix."^^ . _:genid1182 "PSI:MS"^^ . _:genid1183 . _:genid1183 . _:genid1183 . _:genid1183 "value-type:xsd:float"^^ . _:genid1183 "The allowed value-type for this CV term."^^ . . . "Dried droplet in MALDI matrix preparation."^^ . "MS"^^ . "MS:1000836"^^ . "dried droplet MALDI matrix preparation"^^ . _:genid1184 . _:genid1184 . _:genid1184 . _:genid1184 "Dried droplet in MALDI matrix preparation."^^ . _:genid1184 "PSI:MS"^^ . . . "Printed MALDI matrix preparation."^^ . "MS"^^ . "MS:1000837"^^ . "printed MALDI matrix preparation"^^ . _:genid1185 . _:genid1185 . _:genid1185 . _:genid1185 "Printed MALDI matrix preparation."^^ . _:genid1185 "PSI:MS"^^ . . . "Sprayed MALDI matrix preparation."^^ . "MS"^^ . "MS:1000838"^^ . "sprayed MALDI matrix preparation"^^ . _:genid1186 . _:genid1186 . _:genid1186 . _:genid1186 "Sprayed MALDI matrix preparation."^^ . _:genid1186 "PSI:MS"^^ . . . . "Precoated MALDI sample plate."^^ . "MS"^^ . "MS:1000839"^^ . "precoated MALDI sample plate"^^ . _:genid1187 . _:genid1187 . _:genid1187 . _:genid1187 "Precoated MALDI sample plate."^^ . _:genid1187 "PSI:MS"^^ . . _:genid1188 . _:genid1188 . _:genid1188 . _:genid1188 . "Device that emits light (electromagnetic radiation) through a process called stimulated emission. The term is an acronym for Light Amplification by Stimulated Emission of Radiation."^^ . "MS"^^ . "MS:1000840"^^ . "laser"^^ . _:genid1189 . _:genid1189 . _:genid1189 . _:genid1189 "Device that emits light (electromagnetic radiation) through a process called stimulated emission. The term is an acronym for Light Amplification by Stimulated Emission of Radiation."^^ . _:genid1189 "PSI:MS"^^ . . _:genid1190 . _:genid1190 . _:genid1190 . _:genid1190 . "Laser properties that are associated with a value."^^ . "MS"^^ . "MS:1000841"^^ . "laser attribute"^^ . _:genid1191 . _:genid1191 . _:genid1191 . _:genid1191 "Laser properties that are associated with a value."^^ . _:genid1191 "PSI:MS"^^ . . _:genid1192 . _:genid1192 . _:genid1192 . _:genid1192 . "Type of laser used for desorption purpose."^^ . "MS"^^ . "MS:1000842"^^ . "laser type"^^ . _:genid1193 . _:genid1193 . _:genid1193 . _:genid1193 "Type of laser used for desorption purpose."^^ . _:genid1193 "PSI:MS"^^ . . . _:genid1194 . _:genid1194 . _:genid1194 . _:genid1194 . _:genid1195 . _:genid1195 . _:genid1195 . _:genid1195 . "OBSOLETE The distance between two peaks of the emitted laser beam."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000843"^^ . "This term was made obsolete because it was redundant with the Pato Ontology term wavelength (UO:0001242)."^^ . "wavelength"^^ . "true"^^ . _:genid1196 . _:genid1196 . _:genid1196 . _:genid1196 "OBSOLETE The distance between two peaks of the emitted laser beam."^^ . _:genid1196 "PSI:MS"^^ . _:genid1197 . _:genid1197 . _:genid1197 . _:genid1197 "value-type:xsd:float"^^ . _:genid1197 "The allowed value-type for this CV term."^^ . . . _:genid1198 . _:genid1198 . _:genid1198 . _:genid1198 . _:genid1199 . _:genid1199 . _:genid1199 . _:genid1199 . "Describes the diameter of the laser beam in x direction."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000844"^^ . "focus diameter x"^^ . _:genid1200 . _:genid1200 . _:genid1200 . _:genid1200 "Describes the diameter of the laser beam in x direction."^^ . _:genid1200 "PSI:MS"^^ . _:genid1201 . _:genid1201 . _:genid1201 . _:genid1201 "value-type:xsd:float"^^ . _:genid1201 "The allowed value-type for this CV term."^^ . . . _:genid1202 . _:genid1202 . _:genid1202 . _:genid1202 . _:genid1203 . _:genid1203 . _:genid1203 . _:genid1203 . "Describes the diameter of the laser beam in y direction."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000845"^^ . "focus diameter y"^^ . _:genid1204 . _:genid1204 . _:genid1204 . _:genid1204 "Describes the diameter of the laser beam in y direction."^^ . _:genid1204 "PSI:MS"^^ . _:genid1205 . _:genid1205 . _:genid1205 . _:genid1205 "value-type:xsd:float"^^ . _:genid1205 "The allowed value-type for this CV term."^^ . . . _:genid1206 . _:genid1206 . _:genid1206 . _:genid1206 . _:genid1207 . _:genid1207 . _:genid1207 . _:genid1207 . "Describes output energy of the laser system. May be attenuated by filters or other means."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000846"^^ . "pulse energy"^^ . _:genid1208 . _:genid1208 . _:genid1208 . _:genid1208 "Describes output energy of the laser system. May be attenuated by filters or other means."^^ . _:genid1208 "PSI:MS"^^ . _:genid1209 . _:genid1209 . _:genid1209 . _:genid1209 "value-type:xsd:float"^^ . _:genid1209 "The allowed value-type for this CV term."^^ . . . _:genid1210 . _:genid1210 . _:genid1210 . _:genid1210 . _:genid1211 . _:genid1211 . _:genid1211 . _:genid1211 . "Describes how long the laser beam was emitted from the laser device."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000847"^^ . "pulse duration"^^ . _:genid1212 . _:genid1212 . _:genid1212 . _:genid1212 "Describes how long the laser beam was emitted from the laser device."^^ . _:genid1212 "PSI:MS"^^ . _:genid1213 . _:genid1213 . _:genid1213 . _:genid1213 "value-type:xsd:float"^^ . _:genid1213 "The allowed value-type for this CV term."^^ . . . _:genid1214 . _:genid1214 . _:genid1214 . _:genid1214 . _:genid1215 . _:genid1215 . _:genid1215 . _:genid1215 . "Describes the reduction of the intensity of the laser beam energy."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000848"^^ . "attenuation"^^ . _:genid1216 . _:genid1216 . _:genid1216 . _:genid1216 "Describes the reduction of the intensity of the laser beam energy."^^ . _:genid1216 "PSI:MS"^^ . _:genid1217 . _:genid1217 . _:genid1217 . _:genid1217 "value-type:xsd:float"^^ . _:genid1217 "The allowed value-type for this CV term."^^ . . . _:genid1218 . _:genid1218 . _:genid1218 . _:genid1218 . _:genid1219 . _:genid1219 . _:genid1219 . _:genid1219 . "Describes the angle between the laser beam and the sample target."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000849"^^ . "impact angle"^^ . _:genid1220 . _:genid1220 . _:genid1220 . _:genid1220 "Describes the angle between the laser beam and the sample target."^^ . _:genid1220 "PSI:MS"^^ . _:genid1221 . _:genid1221 . _:genid1221 . _:genid1221 "value-type:xsd:float"^^ . _:genid1221 "The allowed value-type for this CV term."^^ . . . "Laser which is powered by a gaseous medium."^^ . "MS"^^ . "MS:1000850"^^ . "gas laser"^^ . _:genid1222 . _:genid1222 . _:genid1222 . _:genid1222 "Laser which is powered by a gaseous medium."^^ . _:genid1222 "PSI:MS"^^ . . . "Solid state laser materials are commonly made by doping a crystalline solid host with ions that provide the required energy states."^^ . "MS"^^ . "MS:1000851"^^ . "solid-state laser"^^ . _:genid1223 . _:genid1223 . _:genid1223 . _:genid1223 "Solid state laser materials are commonly made by doping a crystalline solid host with ions that provide the required energy states."^^ . _:genid1223 "PSI:MS"^^ . . . "Dye lasers use an organic dye as the gain medium."^^ . "MS"^^ . "MS:1000852"^^ . "dye-laser"^^ . _:genid1224 . _:genid1224 . _:genid1224 . _:genid1224 "Dye lasers use an organic dye as the gain medium."^^ . _:genid1224 "PSI:MS"^^ . . . "Free electron laser uses a relativistic electron beam as the lasing medium which move freely through a magnetic structure, hence the term."^^ . "MS"^^ . "MS:1000853"^^ . "free electron laser"^^ . _:genid1225 . _:genid1225 . _:genid1225 . _:genid1225 "Free electron laser uses a relativistic electron beam as the lasing medium which move freely through a magnetic structure, hence the term."^^ . _:genid1225 "PSI:MS"^^ . . . "Thermo Scientific LTQ XL MS."^^ . "MS"^^ . "MS:1000854"^^ . "LTQ XL"^^ . _:genid1226 . _:genid1226 . _:genid1226 . _:genid1226 "Thermo Scientific LTQ XL MS."^^ . _:genid1226 "PSI:MS"^^ . . . "Thermo Scientific LTQ Velos MS."^^ . "MS"^^ . "MS:1000855"^^ . "LTQ Velos"^^ . _:genid1227 . _:genid1227 . _:genid1227 . _:genid1227 "Thermo Scientific LTQ Velos MS."^^ . _:genid1227 "PSI:MS"^^ . . . "Thermo Scientific LTQ Velos MS with ETD."^^ . "MS"^^ . "MS:1000856"^^ . "LTQ Velos ETD"^^ . _:genid1228 . _:genid1228 . _:genid1228 . _:genid1228 "Thermo Scientific LTQ Velos MS with ETD."^^ . _:genid1228 "PSI:MS"^^ . . . "Properties of the described run."^^ . "MS"^^ . "MS:1000857"^^ . "run attribute"^^ . _:genid1229 . _:genid1229 . _:genid1229 . _:genid1229 "Properties of the described run."^^ . _:genid1229 "PSI:MS"^^ . . . _:genid1230 . _:genid1230 . _:genid1230 . _:genid1230 . "Identier string that describes the sample fraction. This identifier should contain the fraction number(s) or similar information."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000858"^^ . "fraction identifier"^^ . _:genid1231 . _:genid1231 . _:genid1231 . _:genid1231 "Identier string that describes the sample fraction. This identifier should contain the fraction number(s) or similar information."^^ . _:genid1231 "PSI:MS"^^ . _:genid1232 . _:genid1232 . _:genid1232 . _:genid1232 "value-type:xsd:string"^^ . _:genid1232 "The allowed value-type for this CV term."^^ . . . "Group of two or more atoms held together by chemical bonds."^^ . "MS"^^ . "MS:1000859"^^ . "molecule"^^ . _:genid1233 . _:genid1233 . _:genid1233 . _:genid1233 "Group of two or more atoms held together by chemical bonds."^^ . _:genid1233 "https://en.wikipedia.org/wiki/Molecule"^^ . . . "A molecule of low molecular weight that is composed of two or more amino acid residues."^^ . "MS"^^ . "MS:1000860"^^ . "peptide"^^ . _:genid1234 . _:genid1234 . _:genid1234 . _:genid1234 "A molecule of low molecular weight that is composed of two or more amino acid residues."^^ . _:genid1234 "PSI:MS"^^ . . _:genid1235 . _:genid1235 . _:genid1235 . _:genid1235 . "A physical characteristic of a molecular entity."^^ . "MS"^^ . "MS:1000861"^^ . "molecular entity property"^^ . _:genid1236 . _:genid1236 . _:genid1236 . _:genid1236 "A physical characteristic of a molecular entity."^^ . _:genid1236 "PSI:MS"^^ . . . _:genid1237 . _:genid1237 . _:genid1237 . _:genid1237 . "The pH of a solution at which a charged molecule does not migrate in an electric field."^^ . "value-type:xsd:float"^^ . "pI"^^ . "MS"^^ . "MS:1000862"^^ . "isoelectric point"^^ . _:genid1238 . _:genid1238 . _:genid1238 . _:genid1238 "The pH of a solution at which a charged molecule does not migrate in an electric field."^^ . _:genid1238 "PSI:MS"^^ . _:genid1239 . _:genid1239 . _:genid1239 . _:genid1239 "value-type:xsd:float"^^ . _:genid1239 "The allowed value-type for this CV term."^^ . . . _:genid1240 . _:genid1240 . _:genid1240 . _:genid1240 . "The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm."^^ . "value-type:xsd:float"^^ . "predicted pI"^^ . "MS"^^ . "MS:1000863"^^ . "predicted isoelectric point"^^ . _:genid1241 . _:genid1241 . _:genid1241 . _:genid1241 "The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm."^^ . _:genid1241 "PSI:MS"^^ . _:genid1242 . _:genid1242 . _:genid1242 . _:genid1242 "value-type:xsd:float"^^ . _:genid1242 "The allowed value-type for this CV term."^^ . . . "A combination of symbols used to express the chemical composition of a molecule."^^ . "MS"^^ . "MS:1000864"^^ . "chemical formula"^^ . _:genid1243 . _:genid1243 . _:genid1243 . _:genid1243 "A combination of symbols used to express the chemical composition of a molecule."^^ . _:genid1243 "EDAM:0846"^^ . . . _:genid1244 . _:genid1244 . _:genid1244 . _:genid1244 . "A chemical formula which expresses the proportions of the elements present in a substance."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000865"^^ . "empirical formula"^^ . _:genid1245 . _:genid1245 . _:genid1245 . _:genid1245 "A chemical formula which expresses the proportions of the elements present in a substance."^^ . _:genid1245 "PSI:MS"^^ . _:genid1246 . _:genid1246 . _:genid1246 . _:genid1246 "value-type:xsd:string"^^ . _:genid1246 "The allowed value-type for this CV term."^^ . . . _:genid1247 . _:genid1247 . _:genid1247 . _:genid1247 . "A chemical compound formula expressing the number of atoms of each element present in a compound, without indicating how they are linked."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000866"^^ . "molecular formula"^^ . _:genid1248 . _:genid1248 . _:genid1248 . _:genid1248 "A chemical compound formula expressing the number of atoms of each element present in a compound, without indicating how they are linked."^^ . _:genid1248 "PSI:MS"^^ . _:genid1249 . _:genid1249 . _:genid1249 . _:genid1249 "value-type:xsd:string"^^ . _:genid1249 "The allowed value-type for this CV term."^^ . . . _:genid1250 . _:genid1250 . _:genid1250 . _:genid1250 . "A chemical formula showing the number of atoms of each element in a molecule, their spatial arrangement, and their linkage to each other."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000867"^^ . "structural formula"^^ . _:genid1251 . _:genid1251 . _:genid1251 . _:genid1251 "A chemical formula showing the number of atoms of each element in a molecule, their spatial arrangement, and their linkage to each other."^^ . _:genid1251 "PSI:MS"^^ . _:genid1252 . _:genid1252 . _:genid1252 . _:genid1252 "value-type:xsd:string"^^ . _:genid1252 "The allowed value-type for this CV term."^^ . . . _:genid1253 . _:genid1253 . _:genid1253 . _:genid1253 . "The simplified molecular input line entry specification or SMILES is a specification for unambiguously describing the structure of a chemical compound using a short ASCII string."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000868"^^ . "SMILES formula"^^ . _:genid1254 . _:genid1254 . _:genid1254 . _:genid1254 "The simplified molecular input line entry specification or SMILES is a specification for unambiguously describing the structure of a chemical compound using a short ASCII string."^^ . _:genid1254 "EDAM:2301"^^ . _:genid1255 . _:genid1255 . _:genid1255 . _:genid1255 "value-type:xsd:string"^^ . _:genid1255 "The allowed value-type for this CV term."^^ . . . _:genid1256 . _:genid1256 . _:genid1256 . _:genid1256 . _:genid1257 . _:genid1257 . _:genid1257 . _:genid1257 . "The gas pressure of the collision gas used for collisional excitation."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000869"^^ . "collision gas pressure"^^ . _:genid1258 . _:genid1258 . _:genid1258 . _:genid1258 "The gas pressure of the collision gas used for collisional excitation."^^ . _:genid1258 "PSI:MS"^^ . _:genid1259 . _:genid1259 . _:genid1259 . _:genid1259 "value-type:xsd:float"^^ . _:genid1259 "The allowed value-type for this CV term."^^ . . . "OBSOLETE SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000."^^ . "MS"^^ . "MS:1000870"^^ . "This term was obsoleted because was redundant to MS:1000139."^^ . "4000 QTRAP"^^ . "true"^^ . _:genid1260 . _:genid1260 . _:genid1260 . _:genid1260 "OBSOLETE SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000."^^ . _:genid1260 "PSI:MS"^^ . . . "Software used to predict, select, or optimize transitions or analyze the results of selected reaction monitoring runs."^^ . "MS"^^ . "MS:1000871"^^ . "SRM software"^^ . _:genid1261 . _:genid1261 . _:genid1261 . _:genid1261 "Software used to predict, select, or optimize transitions or analyze the results of selected reaction monitoring runs."^^ . _:genid1261 "PSI:MS"^^ . . . "Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology."^^ . "MS"^^ . "MS:1000872"^^ . "MaRiMba"^^ . _:genid1262 . _:genid1262 . _:genid1262 . _:genid1262 "Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology."^^ . _:genid1262 "http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP-MaRiMba"^^ . . . "Software used to predict or calculate numerical attributes of peptides."^^ . "MS"^^ . "MS:1000873"^^ . "peptide attribute calculation software"^^ . _:genid1263 . _:genid1263 . _:genid1263 . _:genid1263 "Software used to predict or calculate numerical attributes of peptides."^^ . _:genid1263 "PSI:MS"^^ . . . "Sequence Specific Retention Calculator estimates the retention time of peptides based on their sequence."^^ . "MS"^^ . "MS:1000874"^^ . "SSRCalc"^^ . _:genid1264 . _:genid1264 . _:genid1264 . _:genid1264 "Sequence Specific Retention Calculator estimates the retention time of peptides based on their sequence."^^ . _:genid1264 "http://hs2.proteome.ca/SSRCalc/SSRCalc.html"^^ . . . _:genid1265 . _:genid1265 . _:genid1265 . _:genid1265 . _:genid1266 . _:genid1266 . _:genid1266 . _:genid1266 . "Potential difference between the orifice and the skimmer in volts."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000875"^^ . "declustering potential"^^ . _:genid1267 . _:genid1267 . _:genid1267 . _:genid1267 "Potential difference between the orifice and the skimmer in volts."^^ . _:genid1267 "PSI:MS"^^ . _:genid1268 . _:genid1268 . _:genid1268 . _:genid1268 "value-type:xsd:float"^^ . _:genid1268 "The allowed value-type for this CV term."^^ . . . _:genid1269 . _:genid1269 . _:genid1269 . _:genid1269 . _:genid1270 . _:genid1270 . _:genid1270 . _:genid1270 . "Potential difference between the sampling cone/orifice in volts."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000876"^^ . "cone voltage"^^ . _:genid1271 . _:genid1271 . _:genid1271 . _:genid1271 "Potential difference between the sampling cone/orifice in volts."^^ . _:genid1271 "PSI:MS"^^ . _:genid1272 . _:genid1272 . _:genid1272 . _:genid1272 "value-type:xsd:float"^^ . _:genid1272 "The allowed value-type for this CV term."^^ . . . _:genid1273 . _:genid1273 . _:genid1273 . _:genid1273 . _:genid1274 . _:genid1274 . _:genid1274 . _:genid1274 . "Potential difference setting of the tube lens in volts."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000877"^^ . "tube lens voltage"^^ . _:genid1275 . _:genid1275 . _:genid1275 . _:genid1275 "Potential difference setting of the tube lens in volts."^^ . _:genid1275 "PSI:MS"^^ . _:genid1276 . _:genid1276 . _:genid1276 . _:genid1276 "value-type:xsd:float"^^ . _:genid1276 "The allowed value-type for this CV term."^^ . . . "An identifier/accession number to an external reference database."^^ . "MS"^^ . "MS:1000878"^^ . "external reference identifier"^^ . _:genid1277 . _:genid1277 . _:genid1277 . _:genid1277 "An identifier/accession number to an external reference database."^^ . _:genid1277 "PSI:MS"^^ . . . _:genid1278 . _:genid1278 . _:genid1278 . _:genid1278 . "A unique identifier for a publication in the PubMed database (MIR:00000015)."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1000879"^^ . "PubMed identifier"^^ . _:genid1279 . _:genid1279 . _:genid1279 . _:genid1279 "A unique identifier for a publication in the PubMed database (MIR:00000015)."^^ . _:genid1279 "PSI:MS"^^ . _:genid1280 . _:genid1280 . _:genid1280 . _:genid1280 "value-type:xsd:integer"^^ . _:genid1280 "The allowed value-type for this CV term."^^ . . . _:genid1281 . _:genid1281 . _:genid1281 . _:genid1281 . _:genid1282 . _:genid1282 . _:genid1282 . _:genid1282 . "The duration of intervals between scanning, during which the instrument configuration is switched."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000880"^^ . "interchannel delay"^^ . _:genid1283 . _:genid1283 . _:genid1283 . _:genid1283 "The duration of intervals between scanning, during which the instrument configuration is switched."^^ . _:genid1283 "PSI:MS"^^ . _:genid1284 . _:genid1284 . _:genid1284 . _:genid1284 "value-type:xsd:float"^^ . _:genid1284 "The allowed value-type for this CV term."^^ . . _:genid1285 . _:genid1285 . _:genid1285 . _:genid1285 . "Constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer, etc., identifiable as a separately distinguishable entity."^^ . "MS"^^ . "MS:1000881"^^ . "molecular entity"^^ . _:genid1286 . _:genid1286 . _:genid1286 . _:genid1286 "Constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer, etc., identifiable as a separately distinguishable entity."^^ . _:genid1286 "https://en.wikipedia.org/wiki/Molecular_entity"^^ . . . "A compound composed of one or more chains of amino acids in a specific order determined by the base sequence of nucleotides in the DNA of a gene."^^ . "MS"^^ . "MS:1000882"^^ . "protein"^^ . _:genid1287 . _:genid1287 . _:genid1287 . _:genid1287 "A compound composed of one or more chains of amino acids in a specific order determined by the base sequence of nucleotides in the DNA of a gene."^^ . _:genid1287 "PSI:MS"^^ . . . _:genid1288 . _:genid1288 . _:genid1288 . _:genid1288 . "A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000883"^^ . "protein short name"^^ . _:genid1289 . _:genid1289 . _:genid1289 . _:genid1289 "A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN)."^^ . _:genid1289 "PSI:MS"^^ . _:genid1290 . _:genid1290 . _:genid1290 . _:genid1290 "value-type:xsd:string"^^ . _:genid1290 "The allowed value-type for this CV term."^^ . . . _:genid1291 . _:genid1291 . _:genid1291 . _:genid1291 . "An nonphysical characterstic attributed to a specific protein."^^ . "MS"^^ . "MS:1000884"^^ . "protein attribute"^^ . _:genid1292 . _:genid1292 . _:genid1292 . _:genid1292 "An nonphysical characterstic attributed to a specific protein."^^ . _:genid1292 "PSI:MS"^^ . . . . _:genid1293 . _:genid1293 . _:genid1293 . _:genid1293 . "Identifier for a specific protein in a database."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000885"^^ . "protein accession"^^ . _:genid1294 . _:genid1294 . _:genid1294 . _:genid1294 "Identifier for a specific protein in a database."^^ . _:genid1294 "PSI:MS"^^ . _:genid1295 . _:genid1295 . _:genid1295 . _:genid1295 "value-type:xsd:string"^^ . _:genid1295 "The allowed value-type for this CV term."^^ . . . _:genid1296 . _:genid1296 . _:genid1296 . _:genid1296 . "A long name describing the function of the protein."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000886"^^ . "protein name"^^ . _:genid1297 . _:genid1297 . _:genid1297 . _:genid1297 "A long name describing the function of the protein."^^ . _:genid1297 "PSI:MS"^^ . _:genid1298 . _:genid1298 . _:genid1298 . _:genid1298 "value-type:xsd:string"^^ . _:genid1298 "The allowed value-type for this CV term."^^ . . _:genid1299 . _:genid1299 . _:genid1299 . _:genid1299 . "Nonphysical characteristic attributed to a peptide."^^ . "MS"^^ . "MS:1000887"^^ . "peptide attribute"^^ . _:genid1300 . _:genid1300 . _:genid1300 . _:genid1300 "Nonphysical characteristic attributed to a peptide."^^ . _:genid1300 "PSI:MS"^^ . . . _:genid1301 . _:genid1301 . _:genid1301 . _:genid1301 . "Sequence of letter symbols denoting the order of amino acids that compose the peptide, with any amino acid mass modifications that might be present having been stripped away."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000888"^^ . "stripped peptide sequence"^^ . _:genid1302 . _:genid1302 . _:genid1302 . _:genid1302 "Sequence of letter symbols denoting the order of amino acids that compose the peptide, with any amino acid mass modifications that might be present having been stripped away."^^ . _:genid1302 "PSI:MS"^^ . _:genid1303 . _:genid1303 . _:genid1303 . _:genid1303 "value-type:xsd:string"^^ . _:genid1303 "The allowed value-type for this CV term."^^ . . . _:genid1304 . _:genid1304 . _:genid1304 . _:genid1304 . "Sequence of letter symbols denoting the order of amino acid residues that compose the peptidoform including the encoding of any residue modifications that are present."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000889"^^ . "Make it more general as there are actually many other ways to display a modified peptide sequence."^^ . "peptidoform sequence"^^ . _:genid1305 . _:genid1305 . _:genid1305 . _:genid1305 "Sequence of letter symbols denoting the order of amino acid residues that compose the peptidoform including the encoding of any residue modifications that are present."^^ . _:genid1305 "PSI:MS"^^ . _:genid1306 . _:genid1306 . _:genid1306 . _:genid1306 "value-type:xsd:string"^^ . _:genid1306 "The allowed value-type for this CV term."^^ . . . "A state description of how a peptide might be isotopically or isobarically labelled."^^ . "MS"^^ . "MS:1000890"^^ . "peptidoform labeling state"^^ . _:genid1307 . _:genid1307 . _:genid1307 . _:genid1307 "A state description of how a peptide might be isotopically or isobarically labelled."^^ . _:genid1307 "PSI:MS"^^ . . . "A peptide that has been created or labelled with some heavier-than-usual isotopes."^^ . "MS"^^ . "MS:1000891"^^ . "heavy labeled peptidoform"^^ . _:genid1308 . _:genid1308 . _:genid1308 . _:genid1308 "A peptide that has been created or labelled with some heavier-than-usual isotopes."^^ . _:genid1308 "PSI:MS"^^ . . . "A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as \"light\" to distinguish from \"heavy\"."^^ . "light labeled peptide"^^ . "MS"^^ . "MS:1000892"^^ . "unlabeled peptidoform"^^ . _:genid1309 . _:genid1309 . _:genid1309 . _:genid1309 "A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as \"light\" to distinguish from \"heavy\"."^^ . _:genid1309 "PSI:MS"^^ . . . _:genid1310 . _:genid1310 . _:genid1310 . _:genid1310 . "An arbitrary string label used to mark a set of peptides that belong together in a set, whereby the members are differentiated by different isotopic labels. For example, the heavy and light forms of the same peptide will both be assigned the same peptide group label."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000893"^^ . "peptidoform group label"^^ . _:genid1311 . _:genid1311 . _:genid1311 . _:genid1311 "An arbitrary string label used to mark a set of peptides that belong together in a set, whereby the members are differentiated by different isotopic labels. For example, the heavy and light forms of the same peptide will both be assigned the same peptide group label."^^ . _:genid1311 "PSI:MS"^^ . _:genid1312 . _:genid1312 . _:genid1312 . _:genid1312 "value-type:xsd:string"^^ . _:genid1312 "The allowed value-type for this CV term."^^ . . . _:genid1313 . _:genid1313 . _:genid1313 . _:genid1313 . _:genid1314 . _:genid1314 . _:genid1314 . _:genid1314 . _:genid1315 . _:genid1315 . _:genid1315 . _:genid1315 . "A time interval from the start of chromatography when an analyte exits a chromatographic column."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000894"^^ . "retention time"^^ . _:genid1316 . _:genid1316 . _:genid1316 . _:genid1316 "A time interval from the start of chromatography when an analyte exits a chromatographic column."^^ . _:genid1316 "PSI:MS"^^ . _:genid1317 . _:genid1317 . _:genid1317 . _:genid1317 "value-type:xsd:float"^^ . _:genid1317 "The allowed value-type for this CV term."^^ . . . _:genid1318 . _:genid1318 . _:genid1318 . _:genid1318 . _:genid1319 . _:genid1319 . _:genid1319 . _:genid1319 . _:genid1320 . _:genid1320 . _:genid1320 . _:genid1320 . "A time interval from the start of chromatography when an analyte exits an unspecified local chromatographic column and instrumental setup."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000895"^^ . "local retention time"^^ . _:genid1321 . _:genid1321 . _:genid1321 . _:genid1321 "A time interval from the start of chromatography when an analyte exits an unspecified local chromatographic column and instrumental setup."^^ . _:genid1321 "PSI:MS"^^ . _:genid1322 . _:genid1322 . _:genid1322 . _:genid1322 "value-type:xsd:float"^^ . _:genid1322 "The allowed value-type for this CV term."^^ . . . _:genid1323 . _:genid1323 . _:genid1323 . _:genid1323 . _:genid1324 . _:genid1324 . _:genid1324 . _:genid1324 . _:genid1325 . _:genid1325 . _:genid1325 . _:genid1325 . "A time interval from the start of chromatography when an analyte exits a standardized reference chromatographic column and instrumental setup."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000896"^^ . "normalized retention time"^^ . _:genid1326 . _:genid1326 . _:genid1326 . _:genid1326 "A time interval from the start of chromatography when an analyte exits a standardized reference chromatographic column and instrumental setup."^^ . _:genid1326 "PSI:MS"^^ . _:genid1327 . _:genid1327 . _:genid1327 . _:genid1327 "value-type:xsd:float"^^ . _:genid1327 "The allowed value-type for this CV term."^^ . . . _:genid1328 . _:genid1328 . _:genid1328 . _:genid1328 . _:genid1329 . _:genid1329 . _:genid1329 . _:genid1329 . _:genid1330 . _:genid1330 . _:genid1330 . _:genid1330 . "A time interval from the start of chromatography when an analyte exits a chromatographic column as predicted by a referenced software application."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000897"^^ . "predicted retention time"^^ . _:genid1331 . _:genid1331 . _:genid1331 . _:genid1331 "A time interval from the start of chromatography when an analyte exits a chromatographic column as predicted by a referenced software application."^^ . _:genid1331 "PSI:MS"^^ . _:genid1332 . _:genid1332 . _:genid1332 . _:genid1332 "value-type:xsd:float"^^ . _:genid1332 "The allowed value-type for this CV term."^^ . . _:genid1333 . _:genid1333 . _:genid1333 . _:genid1333 . "Something, such as a practice or a product, that is widely recognized or employed, especially because of its excellence."^^ . "MS"^^ . "MS:1000898"^^ . "standard"^^ . _:genid1334 . _:genid1334 . _:genid1334 . _:genid1334 "Something, such as a practice or a product, that is widely recognized or employed, especially because of its excellence."^^ . _:genid1334 "PSI:MS"^^ . . . "A practice or product that has become a standard not because it has been approved by a standards organization but because it is widely used and recognized by the industry as being standard."^^ . "MS"^^ . "MS:1000899"^^ . "de facto standard"^^ . _:genid1335 . _:genid1335 . _:genid1335 . _:genid1335 "A practice or product that has become a standard not because it has been approved by a standards organization but because it is widely used and recognized by the industry as being standard."^^ . _:genid1335 "PSI:MS"^^ . . . "A specification of a minimum amount of information needed to reproduce or fully interpret a scientific result."^^ . "MS"^^ . "MS:1000900"^^ . "minimum information standard"^^ . _:genid1336 . _:genid1336 . _:genid1336 . _:genid1336 "A specification of a minimum amount of information needed to reproduce or fully interpret a scientific result."^^ . _:genid1336 "PSI:MS"^^ . . . "A standard providing the retention times at which a set of reference compounds exit the reference chromatographic column."^^ . "MS"^^ . "MS:1000901"^^ . "retention time normalization standard"^^ . _:genid1337 . _:genid1337 . _:genid1337 . _:genid1337 "A standard providing the retention times at which a set of reference compounds exit the reference chromatographic column."^^ . _:genid1337 "PSI:MS"^^ . . . "The de facto standard providing the retention times at which a set of halogenated reference peptides exit the reference chromatographic column."^^ . "MS"^^ . "MS:1000902"^^ . "H-PINS retention time normalization standard"^^ . _:genid1338 . _:genid1338 . _:genid1338 . _:genid1338 "The de facto standard providing the retention times at which a set of halogenated reference peptides exit the reference chromatographic column."^^ . _:genid1338 "DOI:10.1074/mcp.M800569-MCP200"^^ . _:genid1338 "PMID:19411281"^^ . . . _:genid1339 . _:genid1339 . _:genid1339 . _:genid1339 . "The ordinal of the fragment within a specified ion series. (e.g. 8 for a y8 ion)."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1000903"^^ . "product ion series ordinal"^^ . _:genid1340 . _:genid1340 . _:genid1340 . _:genid1340 "The ordinal of the fragment within a specified ion series. (e.g. 8 for a y8 ion)."^^ . _:genid1340 "PSI:PI"^^ . _:genid1341 . _:genid1341 . _:genid1341 . _:genid1341 "value-type:xsd:positiveInteger"^^ . _:genid1341 "The allowed value-type for this CV term."^^ . . . _:genid1342 . _:genid1342 . _:genid1342 . _:genid1342 . "The difference in m/z of the predicted m/z based on the assigned product ion minus the actual observed peak m/z."^^ . "MS"^^ . "MS:1000904"^^ . "product ion m/z delta"^^ . _:genid1343 . _:genid1343 . _:genid1343 . _:genid1343 "The difference in m/z of the predicted m/z based on the assigned product ion minus the actual observed peak m/z."^^ . _:genid1343 "PSI:PI"^^ . . . _:genid1344 . _:genid1344 . _:genid1344 . _:genid1344 . "The magnitude of a peak expressed in terms of the percentage of the magnitude of the base peak intensity multiplied by 100. The base peak is therefore 10000. This unit is common in normalized spectrum libraries."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000905"^^ . "percent of base peak times 100"^^ . _:genid1345 . _:genid1345 . _:genid1345 . _:genid1345 "The magnitude of a peak expressed in terms of the percentage of the magnitude of the base peak intensity multiplied by 100. The base peak is therefore 10000. This unit is common in normalized spectrum libraries."^^ . _:genid1345 "PSI:MS"^^ . _:genid1346 . _:genid1346 . _:genid1346 . _:genid1346 "value-type:xsd:float"^^ . _:genid1346 "The allowed value-type for this CV term."^^ . . . _:genid1347 . _:genid1347 . _:genid1347 . _:genid1347 . _:genid1348 . _:genid1348 . _:genid1348 . _:genid1348 . "Ordinal specifying the rank in intensity of a peak in a spectrum. Base peak is 1. The next most intense peak is 2, etc."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1000906"^^ . "peak intensity rank"^^ . _:genid1349 . _:genid1349 . _:genid1349 . _:genid1349 "Ordinal specifying the rank in intensity of a peak in a spectrum. Base peak is 1. The next most intense peak is 2, etc."^^ . _:genid1349 "PSI:MS"^^ . _:genid1350 . _:genid1350 . _:genid1350 . _:genid1350 "value-type:xsd:positiveInteger"^^ . _:genid1350 "The allowed value-type for this CV term."^^ . . . _:genid1351 . _:genid1351 . _:genid1351 . _:genid1351 . _:genid1352 . _:genid1352 . _:genid1352 . _:genid1352 . "Ordinal specifying the rank of a peak in a spectrum in terms of suitability for targeting. The most suitable peak is 1. The next most suitability peak is 2, etc. Suitability is algorithm and context dependant."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1000907"^^ . "peak targeting suitability rank"^^ . _:genid1353 . _:genid1353 . _:genid1353 . _:genid1353 "Ordinal specifying the rank of a peak in a spectrum in terms of suitability for targeting. The most suitable peak is 1. The next most suitability peak is 2, etc. Suitability is algorithm and context dependant."^^ . _:genid1353 "PSI:MS"^^ . _:genid1354 . _:genid1354 . _:genid1354 . _:genid1354 "value-type:xsd:positiveInteger"^^ . _:genid1354 "The allowed value-type for this CV term."^^ . . _:genid1355 . _:genid1355 . _:genid1355 . _:genid1355 . "A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely."^^ . "reaction"^^ . "MS"^^ . "MS:1000908"^^ . "transition"^^ . _:genid1356 . _:genid1356 . _:genid1356 . _:genid1356 "A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely."^^ . _:genid1356 "PSI:MS"^^ . . _:genid1357 . _:genid1357 . _:genid1357 . _:genid1357 . "The strategy used to validate that a transition is effective."^^ . "MS"^^ . "MS:1000909"^^ . "transition validation method"^^ . _:genid1358 . _:genid1358 . _:genid1358 . _:genid1358 "The strategy used to validate that a transition is effective."^^ . _:genid1358 "PSI:MS"^^ . . . "The transition has been optimized by direct injection of the peptide into an instrument specified in a separate term, and the optimum voltages and fragmentation energies have been determined."^^ . "MS"^^ . "MS:1000910"^^ . "transition optimized on specified instrument"^^ . _:genid1359 . _:genid1359 . _:genid1359 . _:genid1359 "The transition has been optimized by direct injection of the peptide into an instrument specified in a separate term, and the optimum voltages and fragmentation energies have been determined."^^ . _:genid1359 "PSI:MS"^^ . . . "The transition has been validated by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term."^^ . "MS"^^ . "MS:1000911"^^ . "transition validated with an MS/MS spectrum on specified instrument"^^ . _:genid1360 . _:genid1360 . _:genid1360 . _:genid1360 "The transition has been validated by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term."^^ . _:genid1360 "PSI:MS"^^ . . . "The transition has been purported by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term. However, the detecting instrument is of a different type (e.g. ion trap) than the instrument that the transition will eventually be used on (e.g. triple quad)."^^ . "MS"^^ . "MS:1000912"^^ . "transition purported from an MS/MS spectrum on a different, specified instrument"^^ . _:genid1361 . _:genid1361 . _:genid1361 . _:genid1361 "The transition has been purported by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term. However, the detecting instrument is of a different type (e.g. ion trap) than the instrument that the transition will eventually be used on (e.g. triple quad)."^^ . _:genid1361 "PSI:MS"^^ . . . "The transition has been predicted by informatics software without any direct spectral evidence."^^ . "MS"^^ . "MS:1000913"^^ . "transition predicted by informatic analysis"^^ . _:genid1362 . _:genid1362 . _:genid1362 . _:genid1362 "The transition has been predicted by informatics software without any direct spectral evidence."^^ . _:genid1362 "PSI:MS"^^ . . . . "A file format that has two or more columns of tabular data where each column is separated by a TAB character."^^ . "MS"^^ . "MS:1000914"^^ . "tab delimited text format"^^ . _:genid1363 . _:genid1363 . _:genid1363 . _:genid1363 "A file format that has two or more columns of tabular data where each column is separated by a TAB character."^^ . _:genid1363 "PSI:MS"^^ . . _:genid1364 . _:genid1364 . _:genid1364 . _:genid1364 . "An attribute of a window in time about which a peptide might elute from the column."^^ . "MS"^^ . "MS:1000915"^^ . "retention time window attribute"^^ . _:genid1365 . _:genid1365 . _:genid1365 . _:genid1365 "An attribute of a window in time about which a peptide might elute from the column."^^ . _:genid1365 "PSI:MS"^^ . . . _:genid1366 . _:genid1366 . _:genid1366 . _:genid1366 . _:genid1367 . _:genid1367 . _:genid1367 . _:genid1367 . _:genid1368 . _:genid1368 . _:genid1368 . _:genid1368 . "The extent of the retention time window in time units below the target retention time. The lower and upper offsets may be asymmetric about the target time."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000916"^^ . "retention time window lower offset"^^ . _:genid1369 . _:genid1369 . _:genid1369 . _:genid1369 "The extent of the retention time window in time units below the target retention time. The lower and upper offsets may be asymmetric about the target time."^^ . _:genid1369 "PSI:MS"^^ . _:genid1370 . _:genid1370 . _:genid1370 . _:genid1370 "value-type:xsd:float"^^ . _:genid1370 "The allowed value-type for this CV term."^^ . . . _:genid1371 . _:genid1371 . _:genid1371 . _:genid1371 . _:genid1372 . _:genid1372 . _:genid1372 . _:genid1372 . _:genid1373 . _:genid1373 . _:genid1373 . _:genid1373 . "The extent of the retention time window in time units above the target retention time. The lower and upper offsets may be asymmetric about the target time."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000917"^^ . "retention time window upper offset"^^ . _:genid1374 . _:genid1374 . _:genid1374 . _:genid1374 "The extent of the retention time window in time units above the target retention time. The lower and upper offsets may be asymmetric about the target time."^^ . _:genid1374 "PSI:MS"^^ . _:genid1375 . _:genid1375 . _:genid1375 . _:genid1375 "value-type:xsd:float"^^ . _:genid1375 "The allowed value-type for this CV term."^^ . . _:genid1376 . _:genid1376 . _:genid1376 . _:genid1376 . "A list of peptides or compounds and their expected m/z coordinates that can be used to cause a mass spectrometry to obtain spectra of those molecules specifically."^^ . "MS"^^ . "MS:1000918"^^ . "target list"^^ . _:genid1377 . _:genid1377 . _:genid1377 . _:genid1377 "A list of peptides or compounds and their expected m/z coordinates that can be used to cause a mass spectrometry to obtain spectra of those molecules specifically."^^ . _:genid1377 "PSI:MS"^^ . . _:genid1378 . _:genid1378 . _:genid1378 . _:genid1378 . "A priority setting specifying whether included or excluded targets have priority over the other."^^ . "MS"^^ . "MS:1000919"^^ . "target inclusion exclusion priority"^^ . _:genid1379 . _:genid1379 . _:genid1379 . _:genid1379 "A priority setting specifying whether included or excluded targets have priority over the other."^^ . _:genid1379 "PSI:MS"^^ . . . "A priority setting specifying that included targets have priority over the excluded targets if there is a conflict."^^ . "MS"^^ . "MS:1000920"^^ . "includes supersede excludes"^^ . _:genid1380 . _:genid1380 . _:genid1380 . _:genid1380 "A priority setting specifying that included targets have priority over the excluded targets if there is a conflict."^^ . _:genid1380 "PSI:MS"^^ . . . "A priority setting specifying that excluded targets have priority over the included targets if there is a conflict."^^ . "MS"^^ . "MS:1000921"^^ . "excludes supersede includes"^^ . _:genid1381 . _:genid1381 . _:genid1381 . _:genid1381 "A priority setting specifying that excluded targets have priority over the included targets if there is a conflict."^^ . _:genid1381 "PSI:MS"^^ . . . . "Software used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the MacCoss lab at the University of Washington."^^ . "MS"^^ . "MS:1000922"^^ . "Skyline"^^ . _:genid1382 . _:genid1382 . _:genid1382 . _:genid1382 "Software used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the MacCoss lab at the University of Washington."^^ . _:genid1382 "https://brendanx-uw1.gs.washington.edu/labkey/wiki/home/software/Skyline/page.view?name=default"^^ . . . "Software used to predict, select, and optimize transitions for selected reaction monitoring experiments developed and distributed by the Institute for Systems Biology."^^ . "MS"^^ . "MS:1000923"^^ . "TIQAM"^^ . _:genid1383 . _:genid1383 . _:genid1383 . _:genid1383 "Software used to predict, select, and optimize transitions for selected reaction monitoring experiments developed and distributed by the Institute for Systems Biology."^^ . _:genid1383 "http://tools.proteomecenter.org/TIQAM/TIQAM.html"^^ . . "OBSOLETE Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology."^^ . "MS:1000872"^^ . "MS"^^ . "MS:1000924"^^ . "This term was made obsolete because it was redundant with an existing term (MS:1000872)."^^ . "MaRiMba"^^ . "true"^^ . _:genid1384 . _:genid1384 . _:genid1384 . _:genid1384 "OBSOLETE Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology."^^ . _:genid1384 "http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP-MaRiMba"^^ . . . "Software suite used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the Institute for Systems Biology."^^ . "MS"^^ . "MS:1000925"^^ . "ATAQS"^^ . _:genid1385 . _:genid1385 . _:genid1385 . _:genid1385 "Software suite used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the Institute for Systems Biology."^^ . _:genid1385 "PSI:MS"^^ . . . _:genid1386 . _:genid1386 . _:genid1386 . _:genid1386 . "The integer rank given an interpretation of an observed product ion. For example, if y8 is selected as the most likely interpretation of a peak, then it is assigned a rank of 1."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1000926"^^ . "product interpretation rank"^^ . _:genid1387 . _:genid1387 . _:genid1387 . _:genid1387 "The integer rank given an interpretation of an observed product ion. For example, if y8 is selected as the most likely interpretation of a peak, then it is assigned a rank of 1."^^ . _:genid1387 "PSI:MS"^^ . _:genid1388 . _:genid1388 . _:genid1388 . _:genid1388 "value-type:xsd:positiveInteger"^^ . _:genid1388 "The allowed value-type for this CV term."^^ . . . _:genid1389 . _:genid1389 . _:genid1389 . _:genid1389 . _:genid1390 . _:genid1390 . _:genid1390 . _:genid1390 . "The length of time spent filling an ion trapping device."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1000927"^^ . "ion injection time"^^ . _:genid1391 . _:genid1391 . _:genid1391 . _:genid1391 "The length of time spent filling an ion trapping device."^^ . _:genid1391 "PSI:MS"^^ . _:genid1392 . _:genid1392 . _:genid1392 . _:genid1392 "value-type:xsd:float"^^ . _:genid1392 "The allowed value-type for this CV term."^^ . . . "A spectrum derived from a special calibration source, rather than from the primary injected sample. A calibration spectrum is typically derived from a substance that can be used to correct systematic shift in m/z for spectra of the primary inject sample."^^ . "MS"^^ . "MS:1000928"^^ . "calibration spectrum"^^ . _:genid1393 . _:genid1393 . _:genid1393 . _:genid1393 "A spectrum derived from a special calibration source, rather than from the primary injected sample. A calibration spectrum is typically derived from a substance that can be used to correct systematic shift in m/z for spectra of the primary inject sample."^^ . _:genid1393 "PSI:MS"^^ . . . "Native format defined by source=xsd:string start=xsd:nonNegativeInteger end=xsd:nonNegativeInteger."^^ . "MS"^^ . "MS:1000929"^^ . "Shimadzu Biotech nativeID format"^^ . _:genid1394 . _:genid1394 . _:genid1394 . _:genid1394 "Native format defined by source=xsd:string start=xsd:nonNegativeInteger end=xsd:nonNegativeInteger."^^ . _:genid1394 "PSI:MS"^^ . . . "Shimadzu Biotech format."^^ . "MS"^^ . "MS:1000930"^^ . "Shimadzu Biotech database entity"^^ . _:genid1395 . _:genid1395 . _:genid1395 . _:genid1395 "Shimadzu Biotech format."^^ . _:genid1395 "PSI:MS"^^ . . . "Applied Biosystems|MDS SCIEX QTRAP 5500."^^ . "MS"^^ . "MS:1000931"^^ . "QTRAP 5500"^^ . _:genid1396 . _:genid1396 . _:genid1396 . _:genid1396 "Applied Biosystems|MDS SCIEX QTRAP 5500."^^ . _:genid1396 "PSI:MS"^^ . . . "SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer."^^ . "MS"^^ . "MS:1000932"^^ . "TripleTOF 5600"^^ . _:genid1397 . _:genid1397 . _:genid1397 . _:genid1397 "SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer."^^ . _:genid1397 "PSI:MS"^^ . . . _:genid1398 . _:genid1398 . _:genid1398 . _:genid1398 . "Encoding of modifications of the protein sequence from the specified accession, written in PEFF notation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000933"^^ . "protein modifications"^^ . _:genid1399 . _:genid1399 . _:genid1399 . _:genid1399 "Encoding of modifications of the protein sequence from the specified accession, written in PEFF notation."^^ . _:genid1399 "PSI:MS"^^ . _:genid1400 . _:genid1400 . _:genid1400 . _:genid1400 "value-type:xsd:string"^^ . _:genid1400 "The allowed value-type for this CV term."^^ . . . _:genid1401 . _:genid1401 . _:genid1401 . _:genid1401 . "Name of the gene from which the protein is translated."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1000934"^^ . "gene name"^^ . _:genid1402 . _:genid1402 . _:genid1402 . _:genid1402 "Name of the gene from which the protein is translated."^^ . _:genid1402 "PSI:MS"^^ . _:genid1403 . _:genid1403 . _:genid1403 . _:genid1403 "value-type:xsd:string"^^ . _:genid1403 "The allowed value-type for this CV term."^^ . . _:genid1404 . _:genid1404 . _:genid1404 . _:genid1404 . "Collection of terms from the PSI Proteome Informatics standards describing the interpretation of spectra."^^ . "MS"^^ . "MS:1001000"^^ . "spectrum interpretation"^^ . _:genid1405 . _:genid1405 . _:genid1405 . _:genid1405 "Collection of terms from the PSI Proteome Informatics standards describing the interpretation of spectra."^^ . _:genid1405 "PSI:PI"^^ . . . _:genid1406 . _:genid1406 . _:genid1406 . _:genid1406 . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001005"^^ . "SEQUEST:CleavesAt"^^ . _:genid1407 . _:genid1407 . _:genid1407 . _:genid1407 "value-type:xsd:string"^^ . _:genid1407 "The allowed value-type for this CV term."^^ . . . "SEQUEST View Input Parameters."^^ . "MS"^^ . "MS:1001006"^^ . "SEQUEST:ViewCV"^^ . _:genid1408 . _:genid1408 . _:genid1408 . _:genid1408 "SEQUEST View Input Parameters."^^ . _:genid1408 "PSI:PI"^^ . . . _:genid1409 . _:genid1409 . _:genid1409 . _:genid1409 . "Number of peptide results to show."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001007"^^ . "SEQUEST:OutputLines"^^ . _:genid1410 . _:genid1410 . _:genid1410 . _:genid1410 "Number of peptide results to show."^^ . _:genid1410 "PSI:MS"^^ . _:genid1411 . _:genid1411 . _:genid1411 . _:genid1411 "value-type:xsd:nonNegativeInteger"^^ . _:genid1411 "The allowed value-type for this CV term."^^ . . . _:genid1412 . _:genid1412 . _:genid1412 . _:genid1412 . "Number of full protein descriptions to show for top N peptides."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001009"^^ . "SEQUEST:DescriptionLines"^^ . _:genid1413 . _:genid1413 . _:genid1413 . _:genid1413 "Number of full protein descriptions to show for top N peptides."^^ . _:genid1413 "PSI:MS"^^ . _:genid1414 . _:genid1414 . _:genid1414 . _:genid1414 "value-type:xsd:string"^^ . _:genid1414 "The allowed value-type for this CV term."^^ . . . "A de novo sequencing search (without database)."^^ . "MS"^^ . "MS:1001010"^^ . "de novo search"^^ . _:genid1415 . _:genid1415 . _:genid1415 . _:genid1415 "A de novo sequencing search (without database)."^^ . _:genid1415 "PSI:PI"^^ . . . "Details about the database searched."^^ . "MS"^^ . "MS:1001011"^^ . "search database details"^^ . _:genid1416 . _:genid1416 . _:genid1416 . _:genid1416 "Details about the database searched."^^ . _:genid1416 "PSI:PI"^^ . . . _:genid1417 . _:genid1417 . _:genid1417 . _:genid1417 . "The organisation, project or laboratory from where the database is obtained (UniProt, NCBI, EBI, other)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001012"^^ . "database source"^^ . _:genid1418 . _:genid1418 . _:genid1418 . _:genid1418 "The organisation, project or laboratory from where the database is obtained (UniProt, NCBI, EBI, other)."^^ . _:genid1418 "PSI:PI"^^ . _:genid1419 . _:genid1419 . _:genid1419 . _:genid1419 "value-type:xsd:string"^^ . _:genid1419 "The allowed value-type for this CV term."^^ . . . "The name of the search database (nr, SwissProt or est_human)."^^ . "MS"^^ . "MS:1001013"^^ . "database name"^^ . _:genid1420 . _:genid1420 . _:genid1420 . _:genid1420 "The name of the search database (nr, SwissProt or est_human)."^^ . _:genid1420 "PSI:PI"^^ . . . "OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search database from the search engine's point of view."^^ . "MS"^^ . "MS:1001014"^^ . "database local file path"^^ . "true"^^ . _:genid1421 . _:genid1421 . _:genid1421 . _:genid1421 "OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search database from the search engine's point of view."^^ . _:genid1421 "PSI:PI"^^ . . . _:genid1422 . _:genid1422 . _:genid1422 . _:genid1422 . "URI, from where the search database was originally downloaded."^^ . "value-type:xsd:anyURI"^^ . "MS"^^ . "MS:1001015"^^ . "database original uri"^^ . _:genid1423 . _:genid1423 . _:genid1423 . _:genid1423 "URI, from where the search database was originally downloaded."^^ . _:genid1423 "PSI:PI"^^ . _:genid1424 . _:genid1424 . _:genid1424 . _:genid1424 "value-type:xsd:anyURI"^^ . _:genid1424 "The allowed value-type for this CV term."^^ . . . _:genid1425 . _:genid1425 . _:genid1425 . _:genid1425 . "Version of the search database. In mzIdentML use the attribute instead."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001016"^^ . "database version"^^ . _:genid1426 . _:genid1426 . _:genid1426 . _:genid1426 "Version of the search database. In mzIdentML use the attribute instead."^^ . _:genid1426 "PSI:PI"^^ . _:genid1427 . _:genid1427 . _:genid1427 . _:genid1427 "value-type:xsd:string"^^ . _:genid1427 "The allowed value-type for this CV term."^^ . . . . _:genid1428 . _:genid1428 . _:genid1428 . _:genid1428 . _:genid1429 . _:genid1429 . _:genid1429 . _:genid1429 . "Date and time at which a product was publicly released. For mzIdentML, use the database release date XML attribute instead of this term."^^ . "MS"^^ . "MS:1001017"^^ . "release date"^^ . _:genid1430 . _:genid1430 . _:genid1430 . _:genid1430 "Date and time at which a product was publicly released. For mzIdentML, use the database release date XML attribute instead of this term."^^ . _:genid1430 "PSI:PI"^^ . . . "Database containing amino acid or nucleic acid sequences."^^ . "MS"^^ . "MS:1001018"^^ . "database type"^^ . _:genid1431 . _:genid1431 . _:genid1431 . _:genid1431 "Database containing amino acid or nucleic acid sequences."^^ . _:genid1431 "PSI:PI"^^ . . . "Was there filtering used on the database."^^ . "MS"^^ . "MS:1001019"^^ . "database filtering"^^ . _:genid1432 . _:genid1432 . _:genid1432 . _:genid1432 "Was there filtering used on the database."^^ . _:genid1432 "PSI:PI"^^ . . . "A taxonomy filter was to the database search."^^ . "MS"^^ . "MS:1001020"^^ . "DB filter taxonomy"^^ . _:genid1433 . _:genid1433 . _:genid1433 . _:genid1433 "A taxonomy filter was to the database search."^^ . _:genid1433 "PSI:PI"^^ . . . "Filtering applied specifically by accession number pattern."^^ . "MS"^^ . "MS:1001021"^^ . "DB filter on accession numbers"^^ . _:genid1434 . _:genid1434 . _:genid1434 . _:genid1434 "Filtering applied specifically by accession number pattern."^^ . _:genid1434 "PSI:PI"^^ . . . "Filtering applied specifically by protein molecular weight, specified as either a range or above/below a threshold value."^^ . "MS"^^ . "MS:1001022"^^ . "DB MW filter"^^ . _:genid1435 . _:genid1435 . _:genid1435 . _:genid1435 "Filtering applied specifically by protein molecular weight, specified as either a range or above/below a threshold value."^^ . _:genid1435 "PSI:PI"^^ . . . "Filtering applied specifically by predicted protein isoelectric focussing point (pI), specified as either a range or above/below a threshold value."^^ . "MS"^^ . "MS:1001023"^^ . "DB PI filter"^^ . _:genid1436 . _:genid1436 . _:genid1436 . _:genid1436 "Filtering applied specifically by predicted protein isoelectric focussing point (pI), specified as either a range or above/below a threshold value."^^ . _:genid1436 "PSI:PI"^^ . . . "The translated open reading frames from a nucleotide database considered in the search (range: 1-6)."^^ . "MS"^^ . "MS:1001024"^^ . "translation frame"^^ . _:genid1437 . _:genid1437 . _:genid1437 . _:genid1437 "The translated open reading frames from a nucleotide database considered in the search (range: 1-6)."^^ . _:genid1437 "PSI:PI"^^ . . . _:genid1438 . _:genid1438 . _:genid1438 . _:genid1438 . "The translation table used to translate the nucleotides to amino acids."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001025"^^ . "translation table"^^ . _:genid1439 . _:genid1439 . _:genid1439 . _:genid1439 "The translation table used to translate the nucleotides to amino acids."^^ . _:genid1439 "PSI:PI"^^ . _:genid1440 . _:genid1440 . _:genid1440 . _:genid1440 "value-type:xsd:string"^^ . _:genid1440 "The allowed value-type for this CV term."^^ . . . _:genid1441 . _:genid1441 . _:genid1441 . _:genid1441 . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001026"^^ . "SEQUEST:NormalizeXCorrValues"^^ . _:genid1442 . _:genid1442 . _:genid1442 . _:genid1442 "value-type:xsd:boolean"^^ . _:genid1442 "The allowed value-type for this CV term."^^ . . . "Filtering applied specifically by amino acid sequence pattern."^^ . "MS"^^ . "MS:1001027"^^ . "DB filter on sequence pattern"^^ . _:genid1443 . _:genid1443 . _:genid1443 . _:genid1443 "Filtering applied specifically by amino acid sequence pattern."^^ . _:genid1443 "PSI:PI"^^ . . . _:genid1444 . _:genid1444 . _:genid1444 . _:genid1444 . "String in the header of a sequence entry for that entry to be searched."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001028"^^ . "SEQUEST:SequenceHeaderFilter"^^ . _:genid1445 . _:genid1445 . _:genid1445 . _:genid1445 "String in the header of a sequence entry for that entry to be searched."^^ . _:genid1445 "PSI:MS"^^ . _:genid1446 . _:genid1446 . _:genid1446 . _:genid1446 "value-type:xsd:string"^^ . _:genid1446 "The allowed value-type for this CV term."^^ . . . _:genid1447 . _:genid1447 . _:genid1447 . _:genid1447 . "The number of sequences (proteins / nucleotides) from the database search after filtering."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001029"^^ . "number of sequences searched"^^ . _:genid1448 . _:genid1448 . _:genid1448 . _:genid1448 "The number of sequences (proteins / nucleotides) from the database search after filtering."^^ . _:genid1448 "PSI:PI"^^ . _:genid1449 . _:genid1449 . _:genid1449 . _:genid1449 "value-type:xsd:positiveInteger"^^ . _:genid1449 "The allowed value-type for this CV term."^^ . . . . _:genid1450 . _:genid1450 . _:genid1450 . _:genid1450 . "Number of peptide seqs compared to each spectrum."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001030"^^ . "number of peptide seqs compared to each spectrum"^^ . _:genid1451 . _:genid1451 . _:genid1451 . _:genid1451 "Number of peptide seqs compared to each spectrum."^^ . _:genid1451 "PSI:PI"^^ . _:genid1452 . _:genid1452 . _:genid1452 . _:genid1452 "value-type:xsd:nonNegativeInteger"^^ . _:genid1452 "The allowed value-type for this CV term."^^ . . . "A search using a library of spectra."^^ . "MS"^^ . "MS:1001031"^^ . "spectral library search"^^ . _:genid1453 . _:genid1453 . _:genid1453 . _:genid1453 "A search using a library of spectra."^^ . _:genid1453 "PSI:PI"^^ . . . _:genid1454 . _:genid1454 . _:genid1454 . _:genid1454 . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001032"^^ . "SEQUEST:SequencePartialFilter"^^ . _:genid1455 . _:genid1455 . _:genid1455 . _:genid1455 "value-type:xsd:string"^^ . _:genid1455 "The allowed value-type for this CV term."^^ . . . "OBSOLETE: use attribute in mzIdentML instead. Date and time of the actual search run."^^ . "MS"^^ . "MS:1001035"^^ . "date / time search performed"^^ . "true"^^ . _:genid1456 . _:genid1456 . _:genid1456 . _:genid1456 "OBSOLETE: use attribute in mzIdentML instead. Date and time of the actual search run."^^ . _:genid1456 "PSI:PI"^^ . . . _:genid1457 . _:genid1457 . _:genid1457 . _:genid1457 . "The time taken to complete the search in seconds."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001036"^^ . "search time taken"^^ . _:genid1458 . _:genid1458 . _:genid1458 . _:genid1458 "The time taken to complete the search in seconds."^^ . _:genid1458 "PSI:PI"^^ . _:genid1459 . _:genid1459 . _:genid1459 . _:genid1459 "value-type:xsd:positiveInteger"^^ . _:genid1459 "The allowed value-type for this CV term."^^ . . . _:genid1460 . _:genid1460 . _:genid1460 . _:genid1460 . "Flag indicating that fragment ions should be shown."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001037"^^ . "SEQUEST:ShowFragmentIons"^^ . _:genid1461 . _:genid1461 . _:genid1461 . _:genid1461 "Flag indicating that fragment ions should be shown."^^ . _:genid1461 "PSI:MS"^^ . _:genid1462 . _:genid1462 . _:genid1462 . _:genid1462 "value-type:xsd:boolean"^^ . _:genid1462 "The allowed value-type for this CV term."^^ . . . _:genid1463 . _:genid1463 . _:genid1463 . _:genid1463 . "Specify depth as value of the CVParam."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001038"^^ . "SEQUEST:Consensus"^^ . _:genid1464 . _:genid1464 . _:genid1464 . _:genid1464 "Specify depth as value of the CVParam."^^ . _:genid1464 "PSI:PI"^^ . _:genid1465 . _:genid1465 . _:genid1465 . _:genid1465 "value-type:xsd:positiveInteger"^^ . _:genid1465 "The allowed value-type for this CV term."^^ . . . "Type of the source file, the mzIdentML was created from."^^ . "MS"^^ . "MS:1001040"^^ . "intermediate analysis format"^^ . _:genid1466 . _:genid1466 . _:genid1466 . _:genid1466 "Type of the source file, the mzIdentML was created from."^^ . _:genid1466 "PSI:PI"^^ . . . "SEQUEST View / Sort Input Parameters."^^ . "MS"^^ . "MS:1001041"^^ . "SEQUEST:sortCV"^^ . _:genid1467 . _:genid1467 . _:genid1467 . _:genid1467 "SEQUEST View / Sort Input Parameters."^^ . _:genid1467 "PSI:PI"^^ . . . _:genid1468 . _:genid1468 . _:genid1468 . _:genid1468 . "Specify \"number of dtas shown\" as value of the CVParam."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001042"^^ . "SEQUEST:LimitTo"^^ . _:genid1469 . _:genid1469 . _:genid1469 . _:genid1469 "Specify \"number of dtas shown\" as value of the CVParam."^^ . _:genid1469 "PSI:PI"^^ . _:genid1470 . _:genid1470 . _:genid1470 . _:genid1470 "value-type:xsd:positiveInteger"^^ . _:genid1470 "The allowed value-type for this CV term."^^ . . . "Details of cleavage agent (enzyme)."^^ . "MS"^^ . "MS:1001044"^^ . "cleavage agent details"^^ . _:genid1471 . _:genid1471 . _:genid1471 . _:genid1471 "Details of cleavage agent (enzyme)."^^ . _:genid1471 "PSI:PI"^^ . . . "The name of the cleavage agent."^^ . "MS"^^ . "MS:1001045"^^ . "cleavage agent name"^^ . _:genid1472 . _:genid1472 . _:genid1472 . _:genid1472 "The name of the cleavage agent."^^ . _:genid1472 "PSI:PI"^^ . . . _:genid1473 . _:genid1473 . _:genid1473 . _:genid1473 . "Sort order of SEQUEST search results by the delta of the normalized correlation score."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001046"^^ . "SEQUEST:sort by dCn"^^ . _:genid1474 . _:genid1474 . _:genid1474 . _:genid1474 "Sort order of SEQUEST search results by the delta of the normalized correlation score."^^ . _:genid1474 "PSI:PI"^^ . _:genid1475 . _:genid1475 . _:genid1475 . _:genid1475 "value-type:xsd:boolean"^^ . _:genid1475 "The allowed value-type for this CV term."^^ . . . _:genid1476 . _:genid1476 . _:genid1476 . _:genid1476 . "Sort order of SEQUEST search results by the difference between a theoretically calculated and the corresponding experimentally measured molecular mass M."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001047"^^ . "SEQUEST:sort by dM"^^ . _:genid1477 . _:genid1477 . _:genid1477 . _:genid1477 "Sort order of SEQUEST search results by the difference between a theoretically calculated and the corresponding experimentally measured molecular mass M."^^ . _:genid1477 "PSI:PI"^^ . _:genid1478 . _:genid1478 . _:genid1478 . _:genid1478 "value-type:xsd:boolean"^^ . _:genid1478 "The allowed value-type for this CV term."^^ . . . _:genid1479 . _:genid1479 . _:genid1479 . _:genid1479 . "Sort order of SEQUEST search results given by the ions."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001048"^^ . "SEQUEST:sort by Ions"^^ . _:genid1480 . _:genid1480 . _:genid1480 . _:genid1480 "Sort order of SEQUEST search results given by the ions."^^ . _:genid1480 "PSI:PI"^^ . _:genid1481 . _:genid1481 . _:genid1481 . _:genid1481 "value-type:xsd:boolean"^^ . _:genid1481 "The allowed value-type for this CV term."^^ . . . _:genid1482 . _:genid1482 . _:genid1482 . _:genid1482 . "Sort order of SEQUEST search results given by the mass of the protonated ion."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001049"^^ . "SEQUEST:sort by MH+"^^ . _:genid1483 . _:genid1483 . _:genid1483 . _:genid1483 "Sort order of SEQUEST search results given by the mass of the protonated ion."^^ . _:genid1483 "PSI:PI"^^ . _:genid1484 . _:genid1484 . _:genid1484 . _:genid1484 "value-type:xsd:boolean"^^ . _:genid1484 "The allowed value-type for this CV term."^^ . . . _:genid1485 . _:genid1485 . _:genid1485 . _:genid1485 . "Sort order of SEQUEST search results given by the probability."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001050"^^ . "SEQUEST:sort by P"^^ . _:genid1486 . _:genid1486 . _:genid1486 . _:genid1486 "Sort order of SEQUEST search results given by the probability."^^ . _:genid1486 "PSI:PI"^^ . _:genid1487 . _:genid1487 . _:genid1487 . _:genid1487 "value-type:xsd:boolean"^^ . _:genid1487 "The allowed value-type for this CV term."^^ . . _:genid1488 . _:genid1488 . _:genid1488 . _:genid1488 . "OBSOLETE: use attribute independent in mzIdentML instead. Description of multiple enzyme digestion protocol, if any."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001051"^^ . "multiple enzyme combination rules"^^ . "true"^^ . _:genid1489 . _:genid1489 . _:genid1489 . _:genid1489 "OBSOLETE: use attribute independent in mzIdentML instead. Description of multiple enzyme digestion protocol, if any."^^ . _:genid1489 "PSI:PI"^^ . _:genid1490 . _:genid1490 . _:genid1490 . _:genid1490 "value-type:xsd:string"^^ . _:genid1490 "The allowed value-type for this CV term."^^ . . . _:genid1491 . _:genid1491 . _:genid1491 . _:genid1491 . "Sort order of SEQUEST search results given by the previous amino acid."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001052"^^ . "SEQUEST:sort by PreviousAminoAcid"^^ . _:genid1492 . _:genid1492 . _:genid1492 . _:genid1492 "Sort order of SEQUEST search results given by the previous amino acid."^^ . _:genid1492 "PSI:PI"^^ . _:genid1493 . _:genid1493 . _:genid1493 . _:genid1493 "value-type:xsd:boolean"^^ . _:genid1493 "The allowed value-type for this CV term."^^ . . . _:genid1494 . _:genid1494 . _:genid1494 . _:genid1494 . "Sort order of SEQUEST search results given by the reference."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001053"^^ . "SEQUEST:sort by Ref"^^ . _:genid1495 . _:genid1495 . _:genid1495 . _:genid1495 "Sort order of SEQUEST search results given by the reference."^^ . _:genid1495 "PSI:PI"^^ . _:genid1496 . _:genid1496 . _:genid1496 . _:genid1496 "value-type:xsd:boolean"^^ . _:genid1496 "The allowed value-type for this CV term."^^ . . _:genid1497 . _:genid1497 . _:genid1497 . _:genid1497 . "Modification parameters for the search engine run."^^ . "MS"^^ . "MS:1001055"^^ . "modification parameters"^^ . _:genid1498 . _:genid1498 . _:genid1498 . _:genid1498 "Modification parameters for the search engine run."^^ . _:genid1498 "PSI:PI"^^ . . . "The specificity rules for the modifications applied by the search engine."^^ . "MS"^^ . "MS:1001056"^^ . "modification specificity rule"^^ . _:genid1499 . _:genid1499 . _:genid1499 . _:genid1499 "The specificity rules for the modifications applied by the search engine."^^ . _:genid1499 "PSI:PI"^^ . . . "OBSOLETE: Tolerance on types."^^ . "MS"^^ . "MS:1001057"^^ . "tolerance on types"^^ . "true"^^ . _:genid1500 . _:genid1500 . _:genid1500 . _:genid1500 "OBSOLETE: Tolerance on types."^^ . _:genid1500 "PSI:PI"^^ . . . "The quality estimation was done manually."^^ . "MS"^^ . "MS:1001058"^^ . "quality estimation by manual validation"^^ . _:genid1501 . _:genid1501 . _:genid1501 . _:genid1501 "The quality estimation was done manually."^^ . _:genid1501 "PSI:PI"^^ . . . _:genid1502 . _:genid1502 . _:genid1502 . _:genid1502 . "Sort order of SEQUEST search results given by the result 'Sp' of 'Rank/Sp' in the out file (peptide)."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001059"^^ . "SEQUEST:sort by RSp"^^ . _:genid1503 . _:genid1503 . _:genid1503 . _:genid1503 "Sort order of SEQUEST search results given by the result 'Sp' of 'Rank/Sp' in the out file (peptide)."^^ . _:genid1503 "PSI:PI"^^ . _:genid1504 . _:genid1504 . _:genid1504 . _:genid1504 "value-type:xsd:boolean"^^ . _:genid1504 "The allowed value-type for this CV term."^^ . . . "Method for quality estimation (manually or with decoy database)."^^ . "MS"^^ . "MS:1001060"^^ . "quality estimation method details"^^ . _:genid1505 . _:genid1505 . _:genid1505 . _:genid1505 "Method for quality estimation (manually or with decoy database)."^^ . _:genid1505 "PSI:PI"^^ . . . "OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD."^^ . "MS:1000336"^^ . "MS"^^ . "MS:1001061"^^ . "neutral loss"^^ . "true"^^ . _:genid1506 . _:genid1506 . _:genid1506 . _:genid1506 "OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD."^^ . _:genid1506 "PSI:PI"^^ . . . "Mascot MGF file format."^^ . "MS"^^ . "MS:1001062"^^ . "Mascot MGF format"^^ . _:genid1507 . _:genid1507 . _:genid1507 . _:genid1507 "Mascot MGF file format."^^ . _:genid1507 "PSI:MS"^^ . . . "OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed granularity). TODO: add some child terms."^^ . "MS:1001961"^^ . "MS"^^ . "MS:1001065"^^ . "This term was made obsolete and is replaced by the term (MS:1001961)."^^ . "TODOscoring model"^^ . "true"^^ . _:genid1508 . _:genid1508 . _:genid1508 . _:genid1508 "OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed granularity). TODO: add some child terms."^^ . _:genid1508 "PSI:PI"^^ . . . "The description of the DEPRECATED ion fragment series (including charges and neutral losses) that are considered by the search engine."^^ . "MS"^^ . "MS:1001066"^^ . "ions series considered in search"^^ . _:genid1509 . _:genid1509 . _:genid1509 . _:genid1509 "The description of the DEPRECATED ion fragment series (including charges and neutral losses) that are considered by the search engine."^^ . _:genid1509 "PSI:PI"^^ . . . _:genid1510 . _:genid1510 . _:genid1510 . _:genid1510 . "Sort order of SEQUEST search results by the Sp score."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001068"^^ . "SEQUEST:sort by Sp"^^ . _:genid1511 . _:genid1511 . _:genid1511 . _:genid1511 "Sort order of SEQUEST search results by the Sp score."^^ . _:genid1511 "PSI:PI"^^ . _:genid1512 . _:genid1512 . _:genid1512 . _:genid1512 "value-type:xsd:boolean"^^ . _:genid1512 "The allowed value-type for this CV term."^^ . . . _:genid1513 . _:genid1513 . _:genid1513 . _:genid1513 . "Sort order of SEQUEST search results given by the total ion current."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001069"^^ . "SEQUEST:sort by TIC"^^ . _:genid1514 . _:genid1514 . _:genid1514 . _:genid1514 "Sort order of SEQUEST search results given by the total ion current."^^ . _:genid1514 "PSI:PI"^^ . _:genid1515 . _:genid1515 . _:genid1515 . _:genid1515 "value-type:xsd:boolean"^^ . _:genid1515 "The allowed value-type for this CV term."^^ . . . _:genid1516 . _:genid1516 . _:genid1516 . _:genid1516 . "Sort order of SEQUEST search results given by the scan number."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001070"^^ . "SEQUEST:sort by Scan"^^ . _:genid1517 . _:genid1517 . _:genid1517 . _:genid1517 "Sort order of SEQUEST search results given by the scan number."^^ . _:genid1517 "PSI:PI"^^ . _:genid1518 . _:genid1518 . _:genid1518 . _:genid1518 "value-type:xsd:boolean"^^ . _:genid1518 "The allowed value-type for this CV term."^^ . . . _:genid1519 . _:genid1519 . _:genid1519 . _:genid1519 . "Sort order of SEQUEST search results given by the sequence."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001071"^^ . "SEQUEST:sort by Sequence"^^ . _:genid1520 . _:genid1520 . _:genid1520 . _:genid1520 "Sort order of SEQUEST search results given by the sequence."^^ . _:genid1520 "PSI:PI"^^ . _:genid1521 . _:genid1521 . _:genid1521 . _:genid1521 "value-type:xsd:boolean"^^ . _:genid1521 "The allowed value-type for this CV term."^^ . . . _:genid1522 . _:genid1522 . _:genid1522 . _:genid1522 . "Sort order of SEQUEST search results given by the SEQUEST result 'Sf'."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001072"^^ . "SEQUEST:sort by Sf"^^ . _:genid1523 . _:genid1523 . _:genid1523 . _:genid1523 "Sort order of SEQUEST search results given by the SEQUEST result 'Sf'."^^ . _:genid1523 "PSI:PI"^^ . _:genid1524 . _:genid1524 . _:genid1524 . _:genid1524 "value-type:xsd:boolean"^^ . _:genid1524 "The allowed value-type for this CV term."^^ . . . "Database contains amino acid sequences."^^ . "MS"^^ . "MS:1001073"^^ . "database type amino acid"^^ . _:genid1525 . _:genid1525 . _:genid1525 . _:genid1525 "Database contains amino acid sequences."^^ . _:genid1525 "PSI:PI"^^ . . . "Database contains nucleic acid sequences."^^ . "MS"^^ . "MS:1001079"^^ . "database type nucleotide"^^ . _:genid1526 . _:genid1526 . _:genid1526 . _:genid1526 "Database contains nucleic acid sequences."^^ . _:genid1526 "PSI:PI"^^ . . . "Enumeration of type of search value (i.e. from PMF, sequence tag, MS2)."^^ . "MS"^^ . "MS:1001080"^^ . "search type"^^ . _:genid1527 . _:genid1527 . _:genid1527 . _:genid1527 "Enumeration of type of search value (i.e. from PMF, sequence tag, MS2)."^^ . _:genid1527 "PSI:PI"^^ . . . "A peptide mass fingerprint search."^^ . "MS"^^ . "MS:1001081"^^ . "pmf search"^^ . _:genid1528 . _:genid1528 . _:genid1528 . _:genid1528 "A peptide mass fingerprint search."^^ . _:genid1528 "PSI:PI"^^ . . . "A sequence tag search."^^ . "MS"^^ . "MS:1001082"^^ . "tag search"^^ . _:genid1529 . _:genid1529 . _:genid1529 . _:genid1529 "A sequence tag search."^^ . _:genid1529 "PSI:PI"^^ . . . "An MS2 search (with fragment ions)."^^ . "MS"^^ . "MS:1001083"^^ . "ms-ms search"^^ . _:genid1530 . _:genid1530 . _:genid1530 . _:genid1530 "An MS2 search (with fragment ions)."^^ . _:genid1530 "PSI:PI"^^ . . . "Non-redundant GenBank sequence database."^^ . "MS"^^ . "MS:1001084"^^ . "database nr"^^ . _:genid1531 . _:genid1531 . _:genid1531 . _:genid1531 "Non-redundant GenBank sequence database."^^ . _:genid1531 "PSI:PI"^^ . . . "Protein level information."^^ . "MS"^^ . "MS:1001085"^^ . "protein-level identification attribute"^^ . _:genid1532 . _:genid1532 . _:genid1532 . _:genid1532 "Protein level information."^^ . _:genid1532 "PSI:PI"^^ . . . _:genid1533 . _:genid1533 . _:genid1533 . _:genid1533 . "Sort order of SEQUEST search results by the correlation score."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001086"^^ . "SEQUEST:sort by XCorr"^^ . _:genid1534 . _:genid1534 . _:genid1534 . _:genid1534 "Sort order of SEQUEST search results by the correlation score."^^ . _:genid1534 "PSI:PI"^^ . _:genid1535 . _:genid1535 . _:genid1535 . _:genid1535 "value-type:xsd:boolean"^^ . _:genid1535 "The allowed value-type for this CV term."^^ . . . "SEQUEST View / Process Input Parameters."^^ . "MS"^^ . "MS:1001087"^^ . "SEQUEST:ProcessCV"^^ . _:genid1536 . _:genid1536 . _:genid1536 . _:genid1536 "SEQUEST View / Process Input Parameters."^^ . _:genid1536 "PSI:PI"^^ . . . . _:genid1537 . _:genid1537 . _:genid1537 . _:genid1537 . "The protein description line from the sequence entry in the source database FASTA file."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001088"^^ . "protein description"^^ . _:genid1538 . _:genid1538 . _:genid1538 . _:genid1538 "The protein description line from the sequence entry in the source database FASTA file."^^ . _:genid1538 "PSI:PI"^^ . _:genid1539 . _:genid1539 . _:genid1539 . _:genid1539 "value-type:xsd:string"^^ . _:genid1539 "The allowed value-type for this CV term."^^ . . . . . _:genid1540 . _:genid1540 . _:genid1540 . _:genid1540 . "The taxonomy of the resultant molecule from the search."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001089"^^ . "molecule taxonomy"^^ . _:genid1541 . _:genid1541 . _:genid1541 . _:genid1541 "The taxonomy of the resultant molecule from the search."^^ . _:genid1541 "PSI:PI"^^ . _:genid1542 . _:genid1542 . _:genid1542 . _:genid1542 "value-type:xsd:string"^^ . _:genid1542 "The allowed value-type for this CV term."^^ . . . "OBSOLETE: The system used to indicate taxonomy. There should be an enumerated list of options: latin name, NCBI TaxID, common name, Swiss-Prot species ID (ex. RABIT from the full protein ID ALBU_RABIT)."^^ . "MS:1001467"^^ . "MS:1001468"^^ . "MS:1001469"^^ . "MS:1001470"^^ . "MS"^^ . "MS:1001090"^^ . "taxonomy nomenclature"^^ . "true"^^ . _:genid1543 . _:genid1543 . _:genid1543 . _:genid1543 "OBSOLETE: The system used to indicate taxonomy. There should be an enumerated list of options: latin name, NCBI TaxID, common name, Swiss-Prot species ID (ex. RABIT from the full protein ID ALBU_RABIT)."^^ . _:genid1543 "PSI:PI"^^ . . . "MS"^^ . "MS:1001091"^^ . "This term was made obsolete because it is ambiguous and is replaced by NoCleavage (MS:1001955) and unspecific cleavage (MS:1001956)."^^ . "NoEnzyme"^^ . "true"^^ . . . "Identification confidence metric for a peptide."^^ . "MS"^^ . "MS:1001092"^^ . "peptide sequence-level identification statistic"^^ . _:genid1544 . _:genid1544 . _:genid1544 . _:genid1544 "Identification confidence metric for a peptide."^^ . _:genid1544 "PSI:PI"^^ . . . _:genid1545 . _:genid1545 . _:genid1545 . _:genid1545 . "The percent coverage for the protein based upon the matched peptide sequences (can be calculated)."^^ . "value-type:xsd:decimal"^^ . "MS"^^ . "MS:1001093"^^ . "sequence coverage"^^ . _:genid1546 . _:genid1546 . _:genid1546 . _:genid1546 "The percent coverage for the protein based upon the matched peptide sequences (can be calculated)."^^ . _:genid1546 "PSI:PI"^^ . _:genid1547 . _:genid1547 . _:genid1547 . _:genid1547 "value-type:xsd:decimal"^^ . _:genid1547 "The allowed value-type for this CV term."^^ . . . _:genid1548 . _:genid1548 . _:genid1548 . _:genid1548 . "Sort order of SEQUEST search results given by the charge."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001094"^^ . "SEQUEST:sort by z"^^ . _:genid1549 . _:genid1549 . _:genid1549 . _:genid1549 "Sort order of SEQUEST search results given by the charge."^^ . _:genid1549 "PSI:PI"^^ . _:genid1550 . _:genid1550 . _:genid1550 . _:genid1550 "value-type:xsd:boolean"^^ . _:genid1550 "The allowed value-type for this CV term."^^ . . . _:genid1551 . _:genid1551 . _:genid1551 . _:genid1551 . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001095"^^ . "SEQUEST:ProcessAll"^^ . _:genid1552 . _:genid1552 . _:genid1552 . _:genid1552 "value-type:xsd:boolean"^^ . _:genid1552 "The allowed value-type for this CV term."^^ . . . _:genid1553 . _:genid1553 . _:genid1553 . _:genid1553 . "Specify \"percentage\" as value of the CVParam."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001096"^^ . "SEQUEST:TopPercentMostIntense"^^ . _:genid1554 . _:genid1554 . _:genid1554 . _:genid1554 "Specify \"percentage\" as value of the CVParam."^^ . _:genid1554 "PSI:PI"^^ . _:genid1555 . _:genid1555 . _:genid1555 . _:genid1555 "value-type:xsd:double"^^ . _:genid1555 "The allowed value-type for this CV term."^^ . . . _:genid1556 . _:genid1556 . _:genid1556 . _:genid1556 . "This counts distinct sequences hitting the protein without regard to a minimal confidence threshold."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001097"^^ . "distinct peptide sequences"^^ . _:genid1557 . _:genid1557 . _:genid1557 . _:genid1557 "This counts distinct sequences hitting the protein without regard to a minimal confidence threshold."^^ . _:genid1557 "PSI:PI"^^ . _:genid1558 . _:genid1558 . _:genid1558 . _:genid1558 "value-type:xsd:nonNegativeInteger"^^ . _:genid1558 "The allowed value-type for this CV term."^^ . . . _:genid1559 . _:genid1559 . _:genid1559 . _:genid1559 . "This counts the number of distinct peptide sequences. Multiple charge states and multiple modification states do NOT count as multiple sequences. The definition of 'confident' must be qualified elsewhere."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001098"^^ . "confident distinct peptide sequences"^^ . _:genid1560 . _:genid1560 . _:genid1560 . _:genid1560 "This counts the number of distinct peptide sequences. Multiple charge states and multiple modification states do NOT count as multiple sequences. The definition of 'confident' must be qualified elsewhere."^^ . _:genid1560 "PSI:PI"^^ . _:genid1561 . _:genid1561 . _:genid1561 . _:genid1561 "value-type:xsd:nonNegativeInteger"^^ . _:genid1561 "The allowed value-type for this CV term."^^ . . . _:genid1562 . _:genid1562 . _:genid1562 . _:genid1562 . "The point of this entry is to define what is meant by confident for the term Confident distinct peptide sequence and/or Confident peptides. Example 1 - metric=Paragon:Confidence value=95 sense=greater than Example 2 - metric=Mascot:Eval value=0.05 sense=less than."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001099"^^ . "confident peptide qualification"^^ . _:genid1563 . _:genid1563 . _:genid1563 . _:genid1563 "The point of this entry is to define what is meant by confident for the term Confident distinct peptide sequence and/or Confident peptides. Example 1 - metric=Paragon:Confidence value=95 sense=greater than Example 2 - metric=Mascot:Eval value=0.05 sense=less than."^^ . _:genid1563 "PSI:PI"^^ . _:genid1564 . _:genid1564 . _:genid1564 . _:genid1564 "value-type:xsd:nonNegativeInteger"^^ . _:genid1564 "The allowed value-type for this CV term."^^ . . . _:genid1565 . _:genid1565 . _:genid1565 . _:genid1565 . "This counts the number of peptide sequences without regard to whether they are distinct. Multiple charges states and multiple modification states DO count as multiple peptides. The definition of 'confident' must be qualified elsewhere."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001100"^^ . "confident peptide sequence number"^^ . _:genid1566 . _:genid1566 . _:genid1566 . _:genid1566 "This counts the number of peptide sequences without regard to whether they are distinct. Multiple charges states and multiple modification states DO count as multiple peptides. The definition of 'confident' must be qualified elsewhere."^^ . _:genid1566 "PSI:PI"^^ . _:genid1567 . _:genid1567 . _:genid1567 . _:genid1567 "value-type:xsd:nonNegativeInteger"^^ . _:genid1567 "The allowed value-type for this CV term."^^ . . . "Protein group or subset relationships."^^ . "MS"^^ . "MS:1001101"^^ . "protein group or subset relationship"^^ . _:genid1568 . _:genid1568 . _:genid1568 . _:genid1568 "Protein group or subset relationships."^^ . _:genid1568 "PSI:PI"^^ . . . _:genid1569 . _:genid1569 . _:genid1569 . _:genid1569 . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001102"^^ . "SEQUEST:Chromatogram"^^ . _:genid1570 . _:genid1570 . _:genid1570 . _:genid1570 "value-type:xsd:boolean"^^ . _:genid1570 "The allowed value-type for this CV term."^^ . . . _:genid1571 . _:genid1571 . _:genid1571 . _:genid1571 . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001103"^^ . "SEQUEST:InfoAndLog"^^ . _:genid1572 . _:genid1572 . _:genid1572 . _:genid1572 "value-type:xsd:boolean"^^ . _:genid1572 "The allowed value-type for this CV term."^^ . . . "The name of the UniProtKB/Swiss-Prot knowledgebase."^^ . "MS"^^ . "MS:1001104"^^ . "database UniProtKB/Swiss-Prot"^^ . _:genid1573 . _:genid1573 . _:genid1573 . _:genid1573 "The name of the UniProtKB/Swiss-Prot knowledgebase."^^ . _:genid1573 "PSI:PI"^^ . . . "Peptide level information."^^ . "MS"^^ . "MS:1001105"^^ . "peptide sequence-level identification attribute"^^ . _:genid1574 . _:genid1574 . _:genid1574 . _:genid1574 "Peptide level information."^^ . _:genid1574 "PSI:PI"^^ . . . _:genid1575 . _:genid1575 . _:genid1575 . _:genid1575 . "Specify \"number\" as value of the CVParam."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001106"^^ . "SEQUEST:TopNumber"^^ . _:genid1576 . _:genid1576 . _:genid1576 . _:genid1576 "Specify \"number\" as value of the CVParam."^^ . _:genid1576 "PSI:PI"^^ . _:genid1577 . _:genid1577 . _:genid1577 . _:genid1577 "value-type:xsd:positiveInteger"^^ . _:genid1577 "The allowed value-type for this CV term."^^ . . . "Source file for this mzIdentML was a data set in a database."^^ . "MS"^^ . "MS:1001107"^^ . "data stored in database"^^ . _:genid1578 . _:genid1578 . _:genid1578 . _:genid1578 "Source file for this mzIdentML was a data set in a database."^^ . _:genid1578 "PSI:PI"^^ . . . "Parameter information, type of product: a ion with charge on the N-terminal side."^^ . "MS"^^ . "MS:1001108"^^ . "param: a ion"^^ . _:genid1579 . _:genid1579 . _:genid1579 . _:genid1579 "Parameter information, type of product: a ion with charge on the N-terminal side."^^ . _:genid1579 "PSI:PI"^^ . . . _:genid1580 . _:genid1580 . _:genid1580 . _:genid1580 . "Specify cull string as value of the CVParam."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001109"^^ . "SEQUEST:CullTo"^^ . _:genid1581 . _:genid1581 . _:genid1581 . _:genid1581 "Specify cull string as value of the CVParam."^^ . _:genid1581 "PSI:PI"^^ . _:genid1582 . _:genid1582 . _:genid1582 . _:genid1582 "value-type:xsd:string"^^ . _:genid1582 "The allowed value-type for this CV term."^^ . . . "SEQUEST Mode Input Parameters."^^ . "MS"^^ . "MS:1001110"^^ . "SEQUEST:modeCV"^^ . _:genid1583 . _:genid1583 . _:genid1583 . _:genid1583 "SEQUEST Mode Input Parameters."^^ . _:genid1583 "PSI:PI"^^ . . . _:genid1584 . _:genid1584 . _:genid1584 . _:genid1584 . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001111"^^ . "SEQUEST:Full"^^ . _:genid1585 . _:genid1585 . _:genid1585 . _:genid1585 "value-type:xsd:boolean"^^ . _:genid1585 "The allowed value-type for this CV term."^^ . . . . _:genid1586 . _:genid1586 . _:genid1586 . _:genid1586 . "Residue preceding the first amino acid in the peptide sequence as it occurs in the protein. Use 'N-term' to denote if the peptide starts at the N terminus of the protein."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001112"^^ . "n-terminal flanking residue"^^ . _:genid1587 . _:genid1587 . _:genid1587 . _:genid1587 "Residue preceding the first amino acid in the peptide sequence as it occurs in the protein. Use 'N-term' to denote if the peptide starts at the N terminus of the protein."^^ . _:genid1587 "PSI:PI"^^ . _:genid1588 . _:genid1588 . _:genid1588 . _:genid1588 "value-type:xsd:string"^^ . _:genid1588 "The allowed value-type for this CV term."^^ . . . . _:genid1589 . _:genid1589 . _:genid1589 . _:genid1589 . "Residue following the last amino acid in the peptide sequence as it occurs in the protein. Use 'C-term' to denote if the peptide ends at the C terminus of the protein."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001113"^^ . "c-terminal flanking residue"^^ . _:genid1590 . _:genid1590 . _:genid1590 . _:genid1590 "Residue following the last amino acid in the peptide sequence as it occurs in the protein. Use 'C-term' to denote if the peptide ends at the C terminus of the protein."^^ . _:genid1590 "PSI:PI"^^ . _:genid1591 . _:genid1591 . _:genid1591 . _:genid1591 "value-type:xsd:string"^^ . _:genid1591 "The allowed value-type for this CV term."^^ . . . _:genid1592 . _:genid1592 . _:genid1592 . _:genid1592 . _:genid1593 . _:genid1593 . _:genid1593 . _:genid1593 . _:genid1594 . _:genid1594 . _:genid1594 . _:genid1594 . "OBSOLETE Retention time of the spectrum from the source file."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001114"^^ . "This term was made obsolete because scan start time (MS:1000016) should be used instead."^^ . "retention time(s)"^^ . "true"^^ . _:genid1595 . _:genid1595 . _:genid1595 . _:genid1595 "OBSOLETE Retention time of the spectrum from the source file."^^ . _:genid1595 "PSI:PI"^^ . _:genid1596 . _:genid1596 . _:genid1596 . _:genid1596 "value-type:xsd:double"^^ . _:genid1596 "The allowed value-type for this CV term."^^ . . "OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult. Take from mzData."^^ . "MS"^^ . "MS:1001115"^^ . "This former purgatory term was made obsolete."^^ . "scan number(s)"^^ . "true"^^ . _:genid1597 . _:genid1597 . _:genid1597 . _:genid1597 "OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult. Take from mzData."^^ . _:genid1597 "PSI:PI"^^ . . . "Results specific for one protein as part of a protein ambiguity group (a result not valid for all the other proteins in the protein ambiguity group)."^^ . "MS"^^ . "MS:1001116"^^ . "single protein identification statistic"^^ . _:genid1598 . _:genid1598 . _:genid1598 . _:genid1598 "Results specific for one protein as part of a protein ambiguity group (a result not valid for all the other proteins in the protein ambiguity group)."^^ . _:genid1598 "PSI:PI"^^ . . . _:genid1599 . _:genid1599 . _:genid1599 . _:genid1599 . _:genid1600 . _:genid1600 . _:genid1600 . _:genid1600 . "The theoretical mass of the molecule (e.g. the peptide sequence and its modifications)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001117"^^ . "theoretical mass"^^ . _:genid1601 . _:genid1601 . _:genid1601 . _:genid1601 "The theoretical mass of the molecule (e.g. the peptide sequence and its modifications)."^^ . _:genid1601 "PSI:PI"^^ . _:genid1602 . _:genid1602 . _:genid1602 . _:genid1602 "value-type:xsd:double"^^ . _:genid1602 "The allowed value-type for this CV term."^^ . . . "Parameter information, type of product: b ion with charge on the N-terminal side."^^ . "MS"^^ . "MS:1001118"^^ . "param: b ion"^^ . _:genid1603 . _:genid1603 . _:genid1603 . _:genid1603 "Parameter information, type of product: b ion with charge on the N-terminal side."^^ . _:genid1603 "PSI:PI"^^ . . . "Parameter information, type of product: c ion with charge on the N-terminal side."^^ . "MS"^^ . "MS:1001119"^^ . "param: c ion"^^ . _:genid1604 . _:genid1604 . _:genid1604 . _:genid1604 "Parameter information, type of product: c ion with charge on the N-terminal side."^^ . _:genid1604 "PSI:PI"^^ . . . _:genid1605 . _:genid1605 . _:genid1605 . _:genid1605 . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001120"^^ . "SEQUEST:FormatAndLinks"^^ . _:genid1606 . _:genid1606 . _:genid1606 . _:genid1606 "value-type:xsd:boolean"^^ . _:genid1606 "The allowed value-type for this CV term."^^ . . . _:genid1607 . _:genid1607 . _:genid1607 . _:genid1607 . "The number of peaks that were matched as qualified by the ion series considered field. If a peak matches multiple ions then only 1 would be added the count."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001121"^^ . "number of matched peaks"^^ . _:genid1608 . _:genid1608 . _:genid1608 . _:genid1608 "The number of peaks that were matched as qualified by the ion series considered field. If a peak matches multiple ions then only 1 would be added the count."^^ . _:genid1608 "PSI:PI"^^ . _:genid1609 . _:genid1609 . _:genid1609 . _:genid1609 "value-type:xsd:nonNegativeInteger"^^ . _:genid1609 "The allowed value-type for this CV term."^^ . . . "The ion series that were used during the calculation of the count (e.g. a, b, c, d, v, w, x, y, z, a-H2O, a-NH3, b-H2O, b-NH3, y-H2O, y-NH3, b-H20, b+, z-, z+1, z+2, b-H3PO4, y-H3PO4, immonium, internal ya, internal yb)."^^ . "MS"^^ . "MS:1001122"^^ . "ions series considered"^^ . _:genid1610 . _:genid1610 . _:genid1610 . _:genid1610 "The ion series that were used during the calculation of the count (e.g. a, b, c, d, v, w, x, y, z, a-H2O, a-NH3, b-H2O, b-NH3, y-H2O, y-NH3, b-H20, b+, z-, z+1, z+2, b-H3PO4, y-H3PO4, immonium, internal ya, internal yb)."^^ . _:genid1610 "PSI:PI"^^ . . . _:genid1611 . _:genid1611 . _:genid1611 . _:genid1611 . "The number of peaks from the original peak list that are used to calculate the scores for a particular search engine. All ions that have the opportunity to match or be counted even if they don't."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001123"^^ . "number of peaks used"^^ . _:genid1612 . _:genid1612 . _:genid1612 . _:genid1612 "The number of peaks from the original peak list that are used to calculate the scores for a particular search engine. All ions that have the opportunity to match or be counted even if they don't."^^ . _:genid1612 "PSI:PI"^^ . _:genid1613 . _:genid1613 . _:genid1613 . _:genid1613 "value-type:xsd:nonNegativeInteger"^^ . _:genid1613 "The allowed value-type for this CV term."^^ . . . _:genid1614 . _:genid1614 . _:genid1614 . _:genid1614 . "The number of peaks from the original peaks listed that were submitted to the search engine."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001124"^^ . "number of peaks submitted"^^ . _:genid1615 . _:genid1615 . _:genid1615 . _:genid1615 "The number of peaks from the original peaks listed that were submitted to the search engine."^^ . _:genid1615 "PSI:PI"^^ . _:genid1616 . _:genid1616 . _:genid1616 . _:genid1616 "value-type:xsd:nonNegativeInteger"^^ . _:genid1616 "The allowed value-type for this CV term."^^ . . . . _:genid1617 . _:genid1617 . _:genid1617 . _:genid1617 . "Result of quality estimation: decision of a manual validation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001125"^^ . "manual validation"^^ . _:genid1618 . _:genid1618 . _:genid1618 . _:genid1618 "Result of quality estimation: decision of a manual validation."^^ . _:genid1618 "PSI:PI"^^ . _:genid1619 . _:genid1619 . _:genid1619 . _:genid1619 "value-type:xsd:string"^^ . _:genid1619 "The allowed value-type for this CV term."^^ . . . _:genid1620 . _:genid1620 . _:genid1620 . _:genid1620 . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001126"^^ . "SEQUEST:Fast"^^ . _:genid1621 . _:genid1621 . _:genid1621 . _:genid1621 "value-type:xsd:boolean"^^ . _:genid1621 "The allowed value-type for this CV term."^^ . . . "Accessions Containing Sequence - Accessions for each protein containing this peptide."^^ . "MS"^^ . "MS:1001127"^^ . "peptide sharing details"^^ . _:genid1622 . _:genid1622 . _:genid1622 . _:genid1622 "Accessions Containing Sequence - Accessions for each protein containing this peptide."^^ . _:genid1622 "PSI:PI"^^ . . . "SEQUEST Select Input Parameters."^^ . "MS"^^ . "MS:1001128"^^ . "SEQUEST:selectCV"^^ . _:genid1623 . _:genid1623 . _:genid1623 . _:genid1623 "SEQUEST Select Input Parameters."^^ . _:genid1623 "PSI:PI"^^ . . _:genid1624 . _:genid1624 . _:genid1624 . _:genid1624 . "Quantification information."^^ . "MS"^^ . "MS:1001129"^^ . "quantification information"^^ . _:genid1625 . _:genid1625 . _:genid1625 . _:genid1625 "Quantification information."^^ . _:genid1625 "PSI:PI"^^ . . . _:genid1626 . _:genid1626 . _:genid1626 . _:genid1626 . "OBSOLETE Peptide raw area."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001130"^^ . "This term was made obsolete because it is replaced by 'MS1 feature area' (MS:1001844)."^^ . "peptide raw area"^^ . "true"^^ . _:genid1627 . _:genid1627 . _:genid1627 . _:genid1627 "OBSOLETE Peptide raw area."^^ . _:genid1627 "PSI:PI"^^ . _:genid1628 . _:genid1628 . _:genid1628 . _:genid1628 "value-type:xsd:double"^^ . _:genid1628 "The allowed value-type for this CV term."^^ . . . _:genid1629 . _:genid1629 . _:genid1629 . _:genid1629 . "Error on peptide area."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001131"^^ . "error on peptide area"^^ . _:genid1630 . _:genid1630 . _:genid1630 . _:genid1630 "Error on peptide area."^^ . _:genid1630 "PSI:PI"^^ . _:genid1631 . _:genid1631 . _:genid1631 . _:genid1631 "value-type:xsd:double"^^ . _:genid1631 "The allowed value-type for this CV term."^^ . . . _:genid1632 . _:genid1632 . _:genid1632 . _:genid1632 . "Peptide ratio."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001132"^^ . "peptide ratio"^^ . _:genid1633 . _:genid1633 . _:genid1633 . _:genid1633 "Peptide ratio."^^ . _:genid1633 "PSI:PI"^^ . _:genid1634 . _:genid1634 . _:genid1634 . _:genid1634 "value-type:xsd:double"^^ . _:genid1634 "The allowed value-type for this CV term."^^ . . . _:genid1635 . _:genid1635 . _:genid1635 . _:genid1635 . "Error on peptide ratio."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001133"^^ . "error on peptide ratio"^^ . _:genid1636 . _:genid1636 . _:genid1636 . _:genid1636 "Error on peptide ratio."^^ . _:genid1636 "PSI:PI"^^ . _:genid1637 . _:genid1637 . _:genid1637 . _:genid1637 "value-type:xsd:double"^^ . _:genid1637 "The allowed value-type for this CV term."^^ . . . _:genid1638 . _:genid1638 . _:genid1638 . _:genid1638 . "Protein ratio."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001134"^^ . "protein ratio"^^ . _:genid1639 . _:genid1639 . _:genid1639 . _:genid1639 "Protein ratio."^^ . _:genid1639 "PSI:PI"^^ . _:genid1640 . _:genid1640 . _:genid1640 . _:genid1640 "value-type:xsd:double"^^ . _:genid1640 "The allowed value-type for this CV term."^^ . . . _:genid1641 . _:genid1641 . _:genid1641 . _:genid1641 . "Error on protein ratio."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001135"^^ . "error on protein ratio"^^ . _:genid1642 . _:genid1642 . _:genid1642 . _:genid1642 "Error on protein ratio."^^ . _:genid1642 "PSI:PI"^^ . _:genid1643 . _:genid1643 . _:genid1643 . _:genid1643 "value-type:xsd:double"^^ . _:genid1643 "The allowed value-type for this CV term."^^ . . . _:genid1644 . _:genid1644 . _:genid1644 . _:genid1644 . "OBSOLETE P-value (protein diff from 1 randomly)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001136"^^ . "This term was made obsolete because it is replaced by 't-test p-value' (MS:1001855)."^^ . "p-value (protein diff from 1 randomly)"^^ . "true"^^ . _:genid1645 . _:genid1645 . _:genid1645 . _:genid1645 "OBSOLETE P-value (protein diff from 1 randomly)."^^ . _:genid1645 "PSI:PI"^^ . _:genid1646 . _:genid1646 . _:genid1646 . _:genid1646 "value-type:xsd:double"^^ . _:genid1646 "The allowed value-type for this CV term."^^ . . . _:genid1647 . _:genid1647 . _:genid1647 . _:genid1647 . "Absolute quantity in terms of real concentration or molecule copy number in sample."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001137"^^ . "absolute quantity"^^ . _:genid1648 . _:genid1648 . _:genid1648 . _:genid1648 "Absolute quantity in terms of real concentration or molecule copy number in sample."^^ . _:genid1648 "PSI:PI"^^ . _:genid1649 . _:genid1649 . _:genid1649 . _:genid1649 "value-type:xsd:double"^^ . _:genid1649 "The allowed value-type for this CV term."^^ . . . _:genid1650 . _:genid1650 . _:genid1650 . _:genid1650 . "Error on absolute quantity."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001138"^^ . "error on absolute quantity"^^ . _:genid1651 . _:genid1651 . _:genid1651 . _:genid1651 "Error on absolute quantity."^^ . _:genid1651 "PSI:PI"^^ . _:genid1652 . _:genid1652 . _:genid1652 . _:genid1652 "value-type:xsd:double"^^ . _:genid1652 "The allowed value-type for this CV term."^^ . . . . "Quantitation software name."^^ . "MS"^^ . "MS:1001139"^^ . "quantitation software name"^^ . _:genid1653 . _:genid1653 . _:genid1653 . _:genid1653 "Quantitation software name."^^ . _:genid1653 "PSI:PI"^^ . . . "OBSOLETE Quantitation software version."^^ . "MS"^^ . "MS:1001140"^^ . "This term was made obsolete because part of mzQuantML schema."^^ . "quantitation software version"^^ . "true"^^ . _:genid1654 . _:genid1654 . _:genid1654 . _:genid1654 "OBSOLETE Quantitation software version."^^ . _:genid1654 "PSI:PI"^^ . . . _:genid1655 . _:genid1655 . _:genid1655 . _:genid1655 . "The intensity of the precursor ion."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001141"^^ . "intensity of precursor ion"^^ . _:genid1656 . _:genid1656 . _:genid1656 . _:genid1656 "The intensity of the precursor ion."^^ . _:genid1656 "PSI:PI"^^ . _:genid1657 . _:genid1657 . _:genid1657 . _:genid1657 "value-type:xsd:double"^^ . _:genid1657 "The allowed value-type for this CV term."^^ . . . "International Protein Index database for Homo sapiens sequences."^^ . "MS"^^ . "MS:1001142"^^ . "database IPI_human"^^ . _:genid1658 . _:genid1658 . _:genid1658 . _:genid1658 "International Protein Index database for Homo sapiens sequences."^^ . _:genid1658 "PSI:PI"^^ . . . "Search engine specific peptide spectrum match scores."^^ . "MS"^^ . "MS:1001143"^^ . "PSM-level search engine specific statistic"^^ . _:genid1659 . _:genid1659 . _:genid1659 . _:genid1659 "Search engine specific peptide spectrum match scores."^^ . _:genid1659 "PSI:PI"^^ . . . "MS"^^ . "MS:1001144"^^ . "SEQUEST:SelectDefault"^^ . . . "SEQUEST Select Advanced Input Parameters."^^ . "MS"^^ . "MS:1001145"^^ . "SEQUEST:SelectAdvancedCV"^^ . _:genid1660 . _:genid1660 . _:genid1660 . _:genid1660 "SEQUEST Select Advanced Input Parameters."^^ . _:genid1660 "PSI:PI"^^ . . . "Ion a-NH3 parameter information, type of product: a ion with lost ammonia."^^ . "MS"^^ . "MS:1001146"^^ . "param: a ion-NH3 DEPRECATED"^^ . _:genid1661 . _:genid1661 . _:genid1661 . _:genid1661 "Ion a-NH3 parameter information, type of product: a ion with lost ammonia."^^ . _:genid1661 "PSI:PI"^^ . . . . "MS"^^ . "MS:1001147"^^ . "protein ambiguity group result details"^^ . . . "Ion a-H2O if a significant and fragment includes STED."^^ . "MS"^^ . "MS:1001148"^^ . "param: a ion-H2O DEPRECATED"^^ . _:genid1662 . _:genid1662 . _:genid1662 . _:genid1662 "Ion a-H2O if a significant and fragment includes STED."^^ . _:genid1662 "PSI:PI"^^ . . . "Ion b-NH3 parameter information, type of product: b ion with lost ammonia."^^ . "MS"^^ . "MS:1001149"^^ . "param: b ion-NH3 DEPRECATED"^^ . _:genid1663 . _:genid1663 . _:genid1663 . _:genid1663 "Ion b-NH3 parameter information, type of product: b ion with lost ammonia."^^ . _:genid1663 "PSI:PI"^^ . . . "Ion b-H2O if b significant and fragment includes STED."^^ . "MS"^^ . "MS:1001150"^^ . "param: b ion-H2O DEPRECATED"^^ . _:genid1664 . _:genid1664 . _:genid1664 . _:genid1664 "Ion b-H2O if b significant and fragment includes STED."^^ . _:genid1664 "PSI:PI"^^ . . . "Ion y-NH3 parameter information, type of product: y ion with lost ammonia."^^ . "MS"^^ . "MS:1001151"^^ . "param: y ion-NH3 DEPRECATED"^^ . _:genid1665 . _:genid1665 . _:genid1665 . _:genid1665 "Ion y-NH3 parameter information, type of product: y ion with lost ammonia."^^ . _:genid1665 "PSI:PI"^^ . . . "MS"^^ . "MS:1001152"^^ . "This term was made obsolete - use MS:1001262 and MS:1002455 instead."^^ . "param: y ion-H2O DEPRECATED"^^ . . . "Search engine specific scores."^^ . "MS"^^ . "MS:1001153"^^ . "search engine specific score"^^ . _:genid1666 . _:genid1666 . _:genid1666 . _:genid1666 "Search engine specific scores."^^ . _:genid1666 "PSI:PI"^^ . . . _:genid1667 . _:genid1667 . _:genid1667 . _:genid1667 . "The SEQUEST result 'Probability'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001154"^^ . "SEQUEST:probability"^^ . _:genid1668 . _:genid1668 . _:genid1668 . _:genid1668 "The SEQUEST result 'Probability'."^^ . _:genid1668 "PSI:PI"^^ . _:genid1669 . _:genid1669 . _:genid1669 . _:genid1669 "value-type:xsd:double"^^ . _:genid1669 "The allowed value-type for this CV term."^^ . . . _:genid1670 . _:genid1670 . _:genid1670 . _:genid1670 . _:genid1671 . _:genid1671 . _:genid1671 . _:genid1671 . "The SEQUEST result 'XCorr'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001155"^^ . "SEQUEST:xcorr"^^ . _:genid1672 . _:genid1672 . _:genid1672 . _:genid1672 "The SEQUEST result 'XCorr'."^^ . _:genid1672 "PSI:PI"^^ . _:genid1673 . _:genid1673 . _:genid1673 . _:genid1673 "value-type:xsd:double"^^ . _:genid1673 "The allowed value-type for this CV term."^^ . . . _:genid1674 . _:genid1674 . _:genid1674 . _:genid1674 . "The SEQUEST result 'DeltaCn'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001156"^^ . "SEQUEST:deltacn"^^ . _:genid1675 . _:genid1675 . _:genid1675 . _:genid1675 "The SEQUEST result 'DeltaCn'."^^ . _:genid1675 "PSI:PI"^^ . _:genid1676 . _:genid1676 . _:genid1676 . _:genid1676 "value-type:xsd:double"^^ . _:genid1676 "The allowed value-type for this CV term."^^ . . . _:genid1677 . _:genid1677 . _:genid1677 . _:genid1677 . "The SEQUEST result 'Sp' (protein)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001157"^^ . "SEQUEST:sp"^^ . _:genid1678 . _:genid1678 . _:genid1678 . _:genid1678 "The SEQUEST result 'Sp' (protein)."^^ . _:genid1678 "PSI:PI"^^ . _:genid1679 . _:genid1679 . _:genid1679 . _:genid1679 "value-type:xsd:double"^^ . _:genid1679 "The allowed value-type for this CV term."^^ . . . _:genid1680 . _:genid1680 . _:genid1680 . _:genid1680 . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001158"^^ . "SEQUEST:Uniq"^^ . _:genid1681 . _:genid1681 . _:genid1681 . _:genid1681 "value-type:xsd:double"^^ . _:genid1681 "The allowed value-type for this CV term."^^ . . . _:genid1682 . _:genid1682 . _:genid1682 . _:genid1682 . "The SEQUEST result 'Expectation value'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001159"^^ . "SEQUEST:expectation value"^^ . _:genid1683 . _:genid1683 . _:genid1683 . _:genid1683 "The SEQUEST result 'Expectation value'."^^ . _:genid1683 "PSI:PI"^^ . _:genid1684 . _:genid1684 . _:genid1684 . _:genid1684 "value-type:xsd:double"^^ . _:genid1684 "The allowed value-type for this CV term."^^ . . . _:genid1685 . _:genid1685 . _:genid1685 . _:genid1685 . "The SEQUEST result 'Sf'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001160"^^ . "SEQUEST:sf"^^ . _:genid1686 . _:genid1686 . _:genid1686 . _:genid1686 "The SEQUEST result 'Sf'."^^ . _:genid1686 "PSI:PI"^^ . _:genid1687 . _:genid1687 . _:genid1687 . _:genid1687 "value-type:xsd:double"^^ . _:genid1687 "The allowed value-type for this CV term."^^ . . . _:genid1688 . _:genid1688 . _:genid1688 . _:genid1688 . "The SEQUEST result 'Matched Ions'."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1001161"^^ . "SEQUEST:matched ions"^^ . _:genid1689 . _:genid1689 . _:genid1689 . _:genid1689 "The SEQUEST result 'Matched Ions'."^^ . _:genid1689 "PSI:PI"^^ . _:genid1690 . _:genid1690 . _:genid1690 . _:genid1690 "value-type:xsd:integer"^^ . _:genid1690 "The allowed value-type for this CV term."^^ . . . _:genid1691 . _:genid1691 . _:genid1691 . _:genid1691 . "The SEQUEST result 'Total Ions'."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1001162"^^ . "SEQUEST:total ions"^^ . _:genid1692 . _:genid1692 . _:genid1692 . _:genid1692 "The SEQUEST result 'Total Ions'."^^ . _:genid1692 "PSI:PI"^^ . _:genid1693 . _:genid1693 . _:genid1693 . _:genid1693 "value-type:xsd:integer"^^ . _:genid1693 "The allowed value-type for this CV term."^^ . . . _:genid1694 . _:genid1694 . _:genid1694 . _:genid1694 . "The SEQUEST result 'Consensus Score'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001163"^^ . "SEQUEST:consensus score"^^ . _:genid1695 . _:genid1695 . _:genid1695 . _:genid1695 "The SEQUEST result 'Consensus Score'."^^ . _:genid1695 "PSI:PI"^^ . _:genid1696 . _:genid1696 . _:genid1696 . _:genid1696 "value-type:xsd:double"^^ . _:genid1696 "The allowed value-type for this CV term."^^ . . . . _:genid1697 . _:genid1697 . _:genid1697 . _:genid1697 . "The Paragon result 'Unused ProtScore'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001164"^^ . "Paragon:unused protscore"^^ . _:genid1698 . _:genid1698 . _:genid1698 . _:genid1698 "The Paragon result 'Unused ProtScore'."^^ . _:genid1698 "PSI:PI"^^ . _:genid1699 . _:genid1699 . _:genid1699 . _:genid1699 "value-type:xsd:double"^^ . _:genid1699 "The allowed value-type for this CV term."^^ . . . . _:genid1700 . _:genid1700 . _:genid1700 . _:genid1700 . "The Paragon result 'Total ProtScore'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001165"^^ . "Paragon:total protscore"^^ . _:genid1701 . _:genid1701 . _:genid1701 . _:genid1701 "The Paragon result 'Total ProtScore'."^^ . _:genid1701 "PSI:PI"^^ . _:genid1702 . _:genid1702 . _:genid1702 . _:genid1702 "value-type:xsd:double"^^ . _:genid1702 "The allowed value-type for this CV term."^^ . . . _:genid1703 . _:genid1703 . _:genid1703 . _:genid1703 . "The Paragon result 'Score'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001166"^^ . "Paragon:score"^^ . _:genid1704 . _:genid1704 . _:genid1704 . _:genid1704 "The Paragon result 'Score'."^^ . _:genid1704 "PSI:PI"^^ . _:genid1705 . _:genid1705 . _:genid1705 . _:genid1705 "value-type:xsd:double"^^ . _:genid1705 "The allowed value-type for this CV term."^^ . . . _:genid1706 . _:genid1706 . _:genid1706 . _:genid1706 . "The Paragon result 'Confidence'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001167"^^ . "Paragon:confidence"^^ . _:genid1707 . _:genid1707 . _:genid1707 . _:genid1707 "The Paragon result 'Confidence'."^^ . _:genid1707 "PSI:PI"^^ . _:genid1708 . _:genid1708 . _:genid1708 . _:genid1708 "value-type:xsd:double"^^ . _:genid1708 "The allowed value-type for this CV term."^^ . . . _:genid1709 . _:genid1709 . _:genid1709 . _:genid1709 . "The Paragon result 'Expression Error Factor'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001168"^^ . "Paragon:expression error factor"^^ . _:genid1710 . _:genid1710 . _:genid1710 . _:genid1710 "The Paragon result 'Expression Error Factor'."^^ . _:genid1710 "PSI:PI"^^ . _:genid1711 . _:genid1711 . _:genid1711 . _:genid1711 "value-type:xsd:double"^^ . _:genid1711 "The allowed value-type for this CV term."^^ . . . _:genid1712 . _:genid1712 . _:genid1712 . _:genid1712 . "The Paragon result 'Expression change P-value'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001169"^^ . "Paragon:expression change p-value"^^ . _:genid1713 . _:genid1713 . _:genid1713 . _:genid1713 "The Paragon result 'Expression change P-value'."^^ . _:genid1713 "PSI:PI"^^ . _:genid1714 . _:genid1714 . _:genid1714 . _:genid1714 "value-type:xsd:double"^^ . _:genid1714 "The allowed value-type for this CV term."^^ . . . _:genid1715 . _:genid1715 . _:genid1715 . _:genid1715 . "The Paragon result 'Contrib'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001170"^^ . "Paragon:contrib"^^ . _:genid1716 . _:genid1716 . _:genid1716 . _:genid1716 "The Paragon result 'Contrib'."^^ . _:genid1716 "PSI:PI"^^ . _:genid1717 . _:genid1717 . _:genid1717 . _:genid1717 "value-type:xsd:double"^^ . _:genid1717 "The allowed value-type for this CV term."^^ . . . _:genid1718 . _:genid1718 . _:genid1718 . _:genid1718 . "The Mascot result 'Score'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001171"^^ . "Mascot:score"^^ . _:genid1719 . _:genid1719 . _:genid1719 . _:genid1719 "The Mascot result 'Score'."^^ . _:genid1719 "PSI:PI"^^ . _:genid1720 . _:genid1720 . _:genid1720 . _:genid1720 "value-type:xsd:double"^^ . _:genid1720 "The allowed value-type for this CV term."^^ . . . _:genid1721 . _:genid1721 . _:genid1721 . _:genid1721 . "The Mascot result 'expectation value'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001172"^^ . "Mascot:expectation value"^^ . _:genid1722 . _:genid1722 . _:genid1722 . _:genid1722 "The Mascot result 'expectation value'."^^ . _:genid1722 "PSI:PI"^^ . _:genid1723 . _:genid1723 . _:genid1723 . _:genid1723 "value-type:xsd:double"^^ . _:genid1723 "The allowed value-type for this CV term."^^ . . . _:genid1724 . _:genid1724 . _:genid1724 . _:genid1724 . "The Mascot result 'Matched ions'."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001173"^^ . "Mascot:matched ions"^^ . _:genid1725 . _:genid1725 . _:genid1725 . _:genid1725 "The Mascot result 'Matched ions'."^^ . _:genid1725 "PSI:PI"^^ . _:genid1726 . _:genid1726 . _:genid1726 . _:genid1726 "value-type:xsd:nonNegativeInteger"^^ . _:genid1726 "The allowed value-type for this CV term."^^ . . . _:genid1727 . _:genid1727 . _:genid1727 . _:genid1727 . "The Mascot result 'Total ions'."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001174"^^ . "Mascot:total ions"^^ . _:genid1728 . _:genid1728 . _:genid1728 . _:genid1728 "The Mascot result 'Total ions'."^^ . _:genid1728 "PSI:PI"^^ . _:genid1729 . _:genid1729 . _:genid1729 . _:genid1729 "value-type:xsd:nonNegativeInteger"^^ . _:genid1729 "The allowed value-type for this CV term."^^ . . . "A peptide matching multiple proteins."^^ . "MS"^^ . "MS:1001175"^^ . "peptide shared in multiple proteins"^^ . _:genid1730 . _:genid1730 . _:genid1730 . _:genid1730 "A peptide matching multiple proteins."^^ . _:genid1730 "PSI:PI"^^ . . . "Regular expression for Trypsin."^^ . "MS"^^ . "MS:1001176"^^ . "(?<=[KR])(?!P)"^^ . _:genid1731 . _:genid1731 . _:genid1731 . _:genid1731 "Regular expression for Trypsin."^^ . _:genid1731 "PSI:PI"^^ . . . _:genid1732 . _:genid1732 . _:genid1732 . _:genid1732 . "Number of Molecular Hypothesis Considered - This is the number of molecules (e.g. peptides for proteomics) considered for a particular search."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001177"^^ . "number of molecular hypothesis considered"^^ . _:genid1733 . _:genid1733 . _:genid1733 . _:genid1733 "Number of Molecular Hypothesis Considered - This is the number of molecules (e.g. peptides for proteomics) considered for a particular search."^^ . _:genid1733 "PSI:PI"^^ . _:genid1734 . _:genid1734 . _:genid1734 . _:genid1734 "value-type:xsd:nonNegativeInteger"^^ . _:genid1734 "The allowed value-type for this CV term."^^ . . . "Expressed sequence tag nucleotide sequence database."^^ . "MS"^^ . "MS:1001178"^^ . "database EST"^^ . _:genid1735 . _:genid1735 . _:genid1735 . _:genid1735 "Expressed sequence tag nucleotide sequence database."^^ . _:genid1735 "PSI:PI"^^ . . . _:genid1736 . _:genid1736 . _:genid1736 . _:genid1736 . "Regular expressions for cleavage enzymes."^^ . "MS"^^ . "MS:1001180"^^ . "Cleavage agent regular expression"^^ . _:genid1737 . _:genid1737 . _:genid1737 . _:genid1737 "Regular expressions for cleavage enzymes."^^ . _:genid1737 "PSI:PI"^^ . . . "The details of the actual run of the search."^^ . "MS"^^ . "MS:1001184"^^ . "search statistics"^^ . _:genid1738 . _:genid1738 . _:genid1738 . _:genid1738 "The details of the actual run of the search."^^ . _:genid1738 "PSI:PI"^^ . . . "As parameter for search engine: apply the modification only at the N-terminus of a peptide."^^ . "MS"^^ . "MS:1001189"^^ . "modification specificity peptide N-term"^^ . _:genid1739 . _:genid1739 . _:genid1739 . _:genid1739 "As parameter for search engine: apply the modification only at the N-terminus of a peptide."^^ . _:genid1739 "PSI:PI"^^ . . . "As parameter for search engine: apply the modification only at the C-terminus of a peptide."^^ . "MS"^^ . "MS:1001190"^^ . "modification specificity peptide C-term"^^ . _:genid1740 . _:genid1740 . _:genid1740 . _:genid1740 "As parameter for search engine: apply the modification only at the C-terminus of a peptide."^^ . _:genid1740 "PSI:PI"^^ . . . . _:genid1741 . _:genid1741 . _:genid1741 . _:genid1741 . "OBSOLETE Quality estimation by p-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001191"^^ . "This term was made obsolete because now is split into peptide and protein terms."^^ . "p-value"^^ . "true"^^ . _:genid1742 . _:genid1742 . _:genid1742 . _:genid1742 "OBSOLETE Quality estimation by p-value."^^ . _:genid1742 "PSI:PI"^^ . _:genid1743 . _:genid1743 . _:genid1743 . _:genid1743 "value-type:xsd:double"^^ . _:genid1743 "The allowed value-type for this CV term."^^ . . . . _:genid1744 . _:genid1744 . _:genid1744 . _:genid1744 . "Result of quality estimation: Expect value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001192"^^ . "Expect value"^^ . _:genid1745 . _:genid1745 . _:genid1745 . _:genid1745 "Result of quality estimation: Expect value."^^ . _:genid1745 "PSI:PI"^^ . _:genid1746 . _:genid1746 . _:genid1746 . _:genid1746 "value-type:xsd:double"^^ . _:genid1746 "The allowed value-type for this CV term."^^ . . . . _:genid1747 . _:genid1747 . _:genid1747 . _:genid1747 . "Result of quality estimation: confidence score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001193"^^ . "confidence score"^^ . _:genid1748 . _:genid1748 . _:genid1748 . _:genid1748 "Result of quality estimation: confidence score."^^ . _:genid1748 "PSI:PI"^^ . _:genid1749 . _:genid1749 . _:genid1749 . _:genid1749 "value-type:xsd:double"^^ . _:genid1749 "The allowed value-type for this CV term."^^ . . . _:genid1750 . _:genid1750 . _:genid1750 . _:genid1750 . "Quality estimation by decoy database."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001194"^^ . "quality estimation with decoy database"^^ . _:genid1751 . _:genid1751 . _:genid1751 . _:genid1751 "Quality estimation by decoy database."^^ . _:genid1751 "PSI:PI"^^ . _:genid1752 . _:genid1752 . _:genid1752 . _:genid1752 "value-type:xsd:boolean"^^ . _:genid1752 "The allowed value-type for this CV term."^^ . . . "Decoy type: Amino acids of protein sequences are used in reverse order."^^ . "MS"^^ . "MS:1001195"^^ . "decoy DB type reverse"^^ . _:genid1753 . _:genid1753 . _:genid1753 . _:genid1753 "Decoy type: Amino acids of protein sequences are used in reverse order."^^ . _:genid1753 "PSI:PI"^^ . . . "Decoy type: Amino acids of protein sequences are randomized (keeping the original protein mass)."^^ . "MS"^^ . "MS:1001196"^^ . "decoy DB type randomized"^^ . _:genid1754 . _:genid1754 . _:genid1754 . _:genid1754 "Decoy type: Amino acids of protein sequences are randomized (keeping the original protein mass)."^^ . _:genid1754 "PSI:PI"^^ . . . "Decoy database composition: database contains original (target) and decoy entries."^^ . "MS"^^ . "MS:1001197"^^ . "DB composition target+decoy"^^ . _:genid1755 . _:genid1755 . _:genid1755 . _:genid1755 "Decoy database composition: database contains original (target) and decoy entries."^^ . _:genid1755 "PSI:PI"^^ . . . "Identification confidence metric for a protein."^^ . "MS"^^ . "MS:1001198"^^ . "protein identification confidence metric"^^ . _:genid1756 . _:genid1756 . _:genid1756 . _:genid1756 "Identification confidence metric for a protein."^^ . _:genid1756 "PSI:PI"^^ . . . "Source file for this mzIdentML was in Mascot DAT file format."^^ . "MS"^^ . "MS:1001199"^^ . "Mascot DAT format"^^ . _:genid1757 . _:genid1757 . _:genid1757 . _:genid1757 "Source file for this mzIdentML was in Mascot DAT file format."^^ . _:genid1757 "PSI:PI"^^ . . . "Source file for this mzIdentML was in SEQUEST out file format."^^ . "MS"^^ . "MS:1001200"^^ . "SEQUEST out file format"^^ . _:genid1758 . _:genid1758 . _:genid1758 . _:genid1758 "Source file for this mzIdentML was in SEQUEST out file format."^^ . _:genid1758 "PSI:PI"^^ . . . _:genid1759 . _:genid1759 . _:genid1759 . _:genid1759 . _:genid1760 . _:genid1760 . _:genid1760 . _:genid1760 . _:genid1761 . _:genid1761 . _:genid1761 . _:genid1761 . "Maximum value of molecular weight filter."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001201"^^ . "DB MW filter maximum"^^ . _:genid1762 . _:genid1762 . _:genid1762 . _:genid1762 "Maximum value of molecular weight filter."^^ . _:genid1762 "PSI:PI"^^ . _:genid1763 . _:genid1763 . _:genid1763 . _:genid1763 "value-type:xsd:double"^^ . _:genid1763 "The allowed value-type for this CV term."^^ . . . _:genid1764 . _:genid1764 . _:genid1764 . _:genid1764 . _:genid1765 . _:genid1765 . _:genid1765 . _:genid1765 . _:genid1766 . _:genid1766 . _:genid1766 . _:genid1766 . "Minimum value of molecular weight filter."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001202"^^ . "DB MW filter minimum"^^ . _:genid1767 . _:genid1767 . _:genid1767 . _:genid1767 "Minimum value of molecular weight filter."^^ . _:genid1767 "PSI:PI"^^ . _:genid1768 . _:genid1768 . _:genid1768 . _:genid1768 "value-type:xsd:double"^^ . _:genid1768 "The allowed value-type for this CV term."^^ . . . _:genid1769 . _:genid1769 . _:genid1769 . _:genid1769 . "Maximum value of isoelectric point filter."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001203"^^ . "DB PI filter maximum"^^ . _:genid1770 . _:genid1770 . _:genid1770 . _:genid1770 "Maximum value of isoelectric point filter."^^ . _:genid1770 "PSI:PI"^^ . _:genid1771 . _:genid1771 . _:genid1771 . _:genid1771 "value-type:xsd:double"^^ . _:genid1771 "The allowed value-type for this CV term."^^ . . . _:genid1772 . _:genid1772 . _:genid1772 . _:genid1772 . "Minimum value of isoelectric point filter."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001204"^^ . "DB PI filter minimum"^^ . _:genid1773 . _:genid1773 . _:genid1773 . _:genid1773 "Minimum value of isoelectric point filter."^^ . _:genid1773 "PSI:PI"^^ . _:genid1774 . _:genid1774 . _:genid1774 . _:genid1774 "value-type:xsd:double"^^ . _:genid1774 "The allowed value-type for this CV term."^^ . . . "The name of the Mascot search engine."^^ . "MS"^^ . "MS:1001207"^^ . "Mascot"^^ . _:genid1775 . _:genid1775 . _:genid1775 . _:genid1775 "The name of the Mascot search engine."^^ . _:genid1775 "PSI:PI"^^ . . . "The name of the SEQUEST search engine."^^ . "MS"^^ . "MS:1001208"^^ . "SEQUEST"^^ . _:genid1776 . _:genid1776 . _:genid1776 . _:genid1776 "The name of the SEQUEST search engine."^^ . _:genid1776 "PSI:PI"^^ . . . "The name of the Phenyx search engine."^^ . "MS"^^ . "MS:1001209"^^ . "Phenyx"^^ . _:genid1777 . _:genid1777 . _:genid1777 . _:genid1777 "The name of the Phenyx search engine."^^ . _:genid1777 "PSI:PI"^^ . . . "The type of mass difference value to be considered by the search engine (monoisotopic or average)."^^ . "MS"^^ . "MS:1001210"^^ . "mass type settings"^^ . _:genid1778 . _:genid1778 . _:genid1778 . _:genid1778 "The type of mass difference value to be considered by the search engine (monoisotopic or average)."^^ . _:genid1778 "PSI:PI"^^ . . . "Mass type setting for parent mass was monoisotopic."^^ . "MS"^^ . "MS:1001211"^^ . "parent mass type mono"^^ . _:genid1779 . _:genid1779 . _:genid1779 . _:genid1779 "Mass type setting for parent mass was monoisotopic."^^ . _:genid1779 "PSI:PI"^^ . . . "Mass type setting for parent mass was average isotopic."^^ . "MS"^^ . "MS:1001212"^^ . "parent mass type average"^^ . _:genid1780 . _:genid1780 . _:genid1780 . _:genid1780 "Mass type setting for parent mass was average isotopic."^^ . _:genid1780 "PSI:PI"^^ . . "OBSOLETE: Scores and global result characteristics."^^ . "MS"^^ . "MS:1001213"^^ . "This former purgatory term was made obsolete."^^ . "search result details"^^ . "true"^^ . _:genid1781 . _:genid1781 . _:genid1781 . _:genid1781 "OBSOLETE: Scores and global result characteristics."^^ . _:genid1781 "PSI:PI"^^ . . . _:genid1782 . _:genid1782 . _:genid1782 . _:genid1782 . _:genid1783 . _:genid1783 . _:genid1783 . _:genid1783 . "Estimation of the global false discovery rate of proteins."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001214"^^ . "protein-level global FDR"^^ . _:genid1784 . _:genid1784 . _:genid1784 . _:genid1784 "Estimation of the global false discovery rate of proteins."^^ . _:genid1784 "PSI:PI"^^ . _:genid1785 . _:genid1785 . _:genid1785 . _:genid1785 "value-type:xsd:double"^^ . _:genid1785 "The allowed value-type for this CV term."^^ . . . _:genid1786 . _:genid1786 . _:genid1786 . _:genid1786 . "The SEQUEST result 'Sp' in out file (peptide)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001215"^^ . "SEQUEST:PeptideSp"^^ . _:genid1787 . _:genid1787 . _:genid1787 . _:genid1787 "The SEQUEST result 'Sp' in out file (peptide)."^^ . _:genid1787 "PSI:PI"^^ . _:genid1788 . _:genid1788 . _:genid1788 . _:genid1788 "value-type:xsd:double"^^ . _:genid1788 "The allowed value-type for this CV term."^^ . . . _:genid1789 . _:genid1789 . _:genid1789 . _:genid1789 . "The SEQUEST result 'Sp' of 'Rank/Sp' in out file (peptide). Also called 'rsp'."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1001217"^^ . "SEQUEST:PeptideRankSp"^^ . _:genid1790 . _:genid1790 . _:genid1790 . _:genid1790 "The SEQUEST result 'Sp' of 'Rank/Sp' in out file (peptide). Also called 'rsp'."^^ . _:genid1790 "PSI:PI"^^ . _:genid1791 . _:genid1791 . _:genid1791 . _:genid1791 "value-type:xsd:integer"^^ . _:genid1791 "The allowed value-type for this CV term."^^ . . . _:genid1792 . _:genid1792 . _:genid1792 . _:genid1792 . "The SEQUEST result '#' in out file (peptide)."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1001218"^^ . "SEQUEST:PeptideNumber"^^ . _:genid1793 . _:genid1793 . _:genid1793 . _:genid1793 "The SEQUEST result '#' in out file (peptide)."^^ . _:genid1793 "PSI:PI"^^ . _:genid1794 . _:genid1794 . _:genid1794 . _:genid1794 "value-type:xsd:integer"^^ . _:genid1794 "The allowed value-type for this CV term."^^ . . . _:genid1795 . _:genid1795 . _:genid1795 . _:genid1795 . "The SEQUEST result 'Id#' in out file (peptide)."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1001219"^^ . "SEQUEST:PeptideIdnumber"^^ . _:genid1796 . _:genid1796 . _:genid1796 . _:genid1796 "The SEQUEST result 'Id#' in out file (peptide)."^^ . _:genid1796 "PSI:PI"^^ . _:genid1797 . _:genid1797 . _:genid1797 . _:genid1797 "value-type:xsd:integer"^^ . _:genid1797 "The allowed value-type for this CV term."^^ . . . "Fragmentation information, type of product: y ion."^^ . "MS"^^ . "MS:1001220"^^ . "frag: y ion"^^ . _:genid1798 . _:genid1798 . _:genid1798 . _:genid1798 "Fragmentation information, type of product: y ion."^^ . _:genid1798 "PSI:PI"^^ . . . "Fragmentation information like ion types."^^ . "MS"^^ . "MS:1001221"^^ . "product ion attribute"^^ . _:genid1799 . _:genid1799 . _:genid1799 . _:genid1799 "Fragmentation information like ion types."^^ . _:genid1799 "PSI:PI"^^ . . . "Fragmentation information, type of product: b ion without water."^^ . "MS"^^ . "MS:1001222"^^ . "frag: b ion - H2O"^^ . _:genid1800 . _:genid1800 . _:genid1800 . _:genid1800 "Fragmentation information, type of product: b ion without water."^^ . _:genid1800 "PSI:PI"^^ . . . "Fragmentation information, type of product: y ion without water."^^ . "MS"^^ . "MS:1001223"^^ . "frag: y ion - H2O"^^ . _:genid1801 . _:genid1801 . _:genid1801 . _:genid1801 "Fragmentation information, type of product: y ion without water."^^ . _:genid1801 "PSI:PI"^^ . . . "Fragmentation information, type of product: b ion."^^ . "MS"^^ . "MS:1001224"^^ . "frag: b ion"^^ . _:genid1802 . _:genid1802 . _:genid1802 . _:genid1802 "Fragmentation information, type of product: b ion."^^ . _:genid1802 "PSI:PI"^^ . . . _:genid1803 . _:genid1803 . _:genid1803 . _:genid1803 . "The m/z of the product ion."^^ . "fragment ion m/z"^^ . "MS"^^ . "MS:1001225"^^ . "product ion m/z"^^ . _:genid1804 . _:genid1804 . _:genid1804 . _:genid1804 "The m/z of the product ion."^^ . _:genid1804 "PSI:PI"^^ . . . _:genid1805 . _:genid1805 . _:genid1805 . _:genid1805 . _:genid1806 . _:genid1806 . _:genid1806 . _:genid1806 . _:genid1807 . _:genid1807 . _:genid1807 . _:genid1807 . _:genid1808 . _:genid1808 . _:genid1808 . _:genid1808 . "The intensity of a single product ion."^^ . "fragment ion intensity"^^ . "MS"^^ . "MS:1001226"^^ . "product ion intensity"^^ . _:genid1809 . _:genid1809 . _:genid1809 . _:genid1809 "The intensity of a single product ion."^^ . _:genid1809 "PSI:PI"^^ . . . _:genid1810 . _:genid1810 . _:genid1810 . _:genid1810 . _:genid1811 . _:genid1811 . _:genid1811 . _:genid1811 . "The product ion m/z error."^^ . "MS"^^ . "MS:1001227"^^ . "product ion m/z error"^^ . _:genid1812 . _:genid1812 . _:genid1812 . _:genid1812 "The product ion m/z error."^^ . _:genid1812 "PSI:PI"^^ . . . "Fragmentation information, type of product: x ion."^^ . "MS"^^ . "MS:1001228"^^ . "frag: x ion"^^ . _:genid1813 . _:genid1813 . _:genid1813 . _:genid1813 "Fragmentation information, type of product: x ion."^^ . _:genid1813 "PSI:PI"^^ . . . "Fragmentation information, type of product: a ion."^^ . "MS"^^ . "MS:1001229"^^ . "frag: a ion"^^ . _:genid1814 . _:genid1814 . _:genid1814 . _:genid1814 "Fragmentation information, type of product: a ion."^^ . _:genid1814 "PSI:PI"^^ . . . "Fragmentation information, type of product: z ion."^^ . "MS"^^ . "MS:1001230"^^ . "frag: z ion"^^ . _:genid1815 . _:genid1815 . _:genid1815 . _:genid1815 "Fragmentation information, type of product: z ion."^^ . _:genid1815 "PSI:PI"^^ . . . "Fragmentation information, type of product: c ion."^^ . "MS"^^ . "MS:1001231"^^ . "frag: c ion"^^ . _:genid1816 . _:genid1816 . _:genid1816 . _:genid1816 "Fragmentation information, type of product: c ion."^^ . _:genid1816 "PSI:PI"^^ . . . "Ion b-NH3 fragmentation information, type of product: b ion without ammonia."^^ . "MS"^^ . "MS:1001232"^^ . "frag: b ion - NH3"^^ . _:genid1817 . _:genid1817 . _:genid1817 . _:genid1817 "Ion b-NH3 fragmentation information, type of product: b ion without ammonia."^^ . _:genid1817 "PSI:PI"^^ . . . "Ion y-NH3 fragmentation information, type of product: y ion without ammonia."^^ . "MS"^^ . "MS:1001233"^^ . "frag: y ion - NH3"^^ . _:genid1818 . _:genid1818 . _:genid1818 . _:genid1818 "Ion y-NH3 fragmentation information, type of product: y ion without ammonia."^^ . _:genid1818 "PSI:PI"^^ . . . "Fragmentation information, type of product: a ion without water."^^ . "MS"^^ . "MS:1001234"^^ . "frag: a ion - H2O"^^ . _:genid1819 . _:genid1819 . _:genid1819 . _:genid1819 "Fragmentation information, type of product: a ion without water."^^ . _:genid1819 "PSI:PI"^^ . . . "Ion a-NH3 fragmentation information, type of product: a ion without ammonia."^^ . "MS"^^ . "MS:1001235"^^ . "frag: a ion - NH3"^^ . _:genid1820 . _:genid1820 . _:genid1820 . _:genid1820 "Ion a-NH3 fragmentation information, type of product: a ion without ammonia."^^ . _:genid1820 "PSI:PI"^^ . . . "Fragmentation information, type of product: d ion."^^ . "MS"^^ . "MS:1001236"^^ . "frag: d ion"^^ . _:genid1821 . _:genid1821 . _:genid1821 . _:genid1821 "Fragmentation information, type of product: d ion."^^ . _:genid1821 "PSI:PI"^^ . . . "Fragmentation information, type of product: v ion."^^ . "MS"^^ . "MS:1001237"^^ . "frag: v ion"^^ . _:genid1822 . _:genid1822 . _:genid1822 . _:genid1822 "Fragmentation information, type of product: v ion."^^ . _:genid1822 "PSI:PI"^^ . . . "Fragmentation information, type of product: w ion."^^ . "MS"^^ . "MS:1001238"^^ . "frag: w ion"^^ . _:genid1823 . _:genid1823 . _:genid1823 . _:genid1823 "Fragmentation information, type of product: w ion."^^ . _:genid1823 "PSI:PI"^^ . . . "Fragmentation information, type of product: immonium ion."^^ . "MS"^^ . "MS:1001239"^^ . "frag: immonium ion"^^ . _:genid1824 . _:genid1824 . _:genid1824 . _:genid1824 "Fragmentation information, type of product: immonium ion."^^ . _:genid1824 "PSI:PI"^^ . . . "Non-identified ion."^^ . "MS"^^ . "MS:1001240"^^ . "non-identified ion"^^ . _:genid1825 . _:genid1825 . _:genid1825 . _:genid1825 "Non-identified ion."^^ . _:genid1825 "PSI:PI"^^ . . . "Co-eluting ion."^^ . "MS"^^ . "MS:1001241"^^ . "co-eluting ion"^^ . _:genid1826 . _:genid1826 . _:genid1826 . _:genid1826 "Co-eluting ion."^^ . _:genid1826 "PSI:PI"^^ . . . "Source file for this mzIdentML was a SEQUEST folder with its out files."^^ . "MS"^^ . "MS:1001242"^^ . "SEQUEST out folder"^^ . _:genid1827 . _:genid1827 . _:genid1827 . _:genid1827 "Source file for this mzIdentML was a SEQUEST folder with its out files."^^ . _:genid1827 "PSI:PI"^^ . . . "Source file for this mzIdentML was a SEQUEST summary page (proteins)."^^ . "MS"^^ . "MS:1001243"^^ . "SEQUEST summary"^^ . _:genid1828 . _:genid1828 . _:genid1828 . _:genid1828 "Source file for this mzIdentML was a SEQUEST summary page (proteins)."^^ . _:genid1828 "PSI:PI"^^ . . . "PerSeptive peak list file format."^^ . "MS"^^ . "MS:1001245"^^ . "PerSeptive PKS format"^^ . _:genid1829 . _:genid1829 . _:genid1829 . _:genid1829 "PerSeptive peak list file format."^^ . _:genid1829 "http://www.matrixscience.com/help/data_file_help.html#PKS"^^ . . . "PE SCIEX peak list file format."^^ . "MS"^^ . "MS:1001246"^^ . "SCIEX API III format"^^ . _:genid1830 . _:genid1830 . _:genid1830 . _:genid1830 "PE SCIEX peak list file format."^^ . _:genid1830 "http://www.matrixscience.com/help/data_file_help.html#API"^^ . . . "Bruker data exchange XML format."^^ . "MS"^^ . "MS:1001247"^^ . "Bruker XML format"^^ . _:genid1831 . _:genid1831 . _:genid1831 . _:genid1831 "Bruker data exchange XML format."^^ . _:genid1831 "PSI:PI"^^ . . _:genid1832 . _:genid1832 . _:genid1832 . _:genid1832 . "Details describing the search input."^^ . "MS"^^ . "MS:1001249"^^ . "search input details"^^ . _:genid1833 . _:genid1833 . _:genid1833 . _:genid1833 "Details describing the search input."^^ . _:genid1833 "PSI:PI"^^ . . . . _:genid1834 . _:genid1834 . _:genid1834 . _:genid1834 . "Result of quality estimation: the local FDR at the current position of a sorted list."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001250"^^ . "local FDR"^^ . _:genid1835 . _:genid1835 . _:genid1835 . _:genid1835 "Result of quality estimation: the local FDR at the current position of a sorted list."^^ . _:genid1835 "PSI:PI"^^ . _:genid1836 . _:genid1836 . _:genid1836 . _:genid1836 "value-type:xsd:double"^^ . _:genid1836 "The allowed value-type for this CV term."^^ . . . _:genid1837 . _:genid1837 . _:genid1837 . _:genid1837 . "Enzyme trypsin."^^ . "MS"^^ . "MS:1001251"^^ . "Trypsin"^^ . _:genid1838 . _:genid1838 . _:genid1838 . _:genid1838 "Enzyme trypsin."^^ . _:genid1838 "PSI:PI"^^ . . . "Database source EBI."^^ . "MS"^^ . "MS:1001252"^^ . "DB source EBI"^^ . _:genid1839 . _:genid1839 . _:genid1839 . _:genid1839 "Database source EBI."^^ . _:genid1839 "PSI:PI"^^ . . . "Database source NCBI."^^ . "MS"^^ . "MS:1001253"^^ . "DB source NCBI"^^ . _:genid1840 . _:genid1840 . _:genid1840 . _:genid1840 "Database source NCBI."^^ . _:genid1840 "PSI:PI"^^ . . . "Database source UniProt."^^ . "MS"^^ . "MS:1001254"^^ . "DB source UniProt"^^ . _:genid1841 . _:genid1841 . _:genid1841 . _:genid1841 "Database source UniProt."^^ . _:genid1841 "PSI:PI"^^ . . . "Mass type setting for fragment mass was average isotopic."^^ . "MS"^^ . "MS:1001255"^^ . "fragment mass type average"^^ . _:genid1842 . _:genid1842 . _:genid1842 . _:genid1842 "Mass type setting for fragment mass was average isotopic."^^ . _:genid1842 "PSI:PI"^^ . . . "Mass type setting for fragment mass was monoisotopic."^^ . "MS"^^ . "MS:1001256"^^ . "fragment mass type mono"^^ . _:genid1843 . _:genid1843 . _:genid1843 . _:genid1843 "Mass type setting for fragment mass was monoisotopic."^^ . _:genid1843 "PSI:PI"^^ . . . "Parameter information, type of product: side chain loss v ion."^^ . "MS"^^ . "MS:1001257"^^ . "param: v ion"^^ . _:genid1844 . _:genid1844 . _:genid1844 . _:genid1844 "Parameter information, type of product: side chain loss v ion."^^ . _:genid1844 "PSI:PI"^^ . . . "Parameter information, type of product: side chain loss d ion."^^ . "MS"^^ . "MS:1001258"^^ . "param: d ion"^^ . _:genid1845 . _:genid1845 . _:genid1845 . _:genid1845 "Parameter information, type of product: side chain loss d ion."^^ . _:genid1845 "PSI:PI"^^ . . . "Parameter information, type of product: immonium ion."^^ . "MS"^^ . "MS:1001259"^^ . "param: immonium ion"^^ . _:genid1846 . _:genid1846 . _:genid1846 . _:genid1846 "Parameter information, type of product: immonium ion."^^ . _:genid1846 "PSI:PI"^^ . . . "Parameter information, type of product: side chain loss w ion."^^ . "MS"^^ . "MS:1001260"^^ . "param: w ion"^^ . _:genid1847 . _:genid1847 . _:genid1847 . _:genid1847 "Parameter information, type of product: side chain loss w ion."^^ . _:genid1847 "PSI:PI"^^ . . . "Parameter information, type of product: x ion with charge on the C-terminal side."^^ . "MS"^^ . "MS:1001261"^^ . "param: x ion"^^ . _:genid1848 . _:genid1848 . _:genid1848 . _:genid1848 "Parameter information, type of product: x ion with charge on the C-terminal side."^^ . _:genid1848 "PSI:PI"^^ . . . "Parameter information, type of product: y ion with charge on the C-terminal side."^^ . "MS"^^ . "MS:1001262"^^ . "param: y ion"^^ . _:genid1849 . _:genid1849 . _:genid1849 . _:genid1849 "Parameter information, type of product: y ion with charge on the C-terminal side."^^ . _:genid1849 "PSI:PI"^^ . . . "Parameter information, type of product: z ion with charge on the C-terminal side."^^ . "MS"^^ . "MS:1001263"^^ . "param: z ion"^^ . _:genid1850 . _:genid1850 . _:genid1850 . _:genid1850 "Parameter information, type of product: z ion with charge on the C-terminal side."^^ . _:genid1850 "PSI:PI"^^ . . . "Role of a Person or Organization."^^ . "MS"^^ . "MS:1001266"^^ . "role type"^^ . _:genid1851 . _:genid1851 . _:genid1851 . _:genid1851 "Role of a Person or Organization."^^ . _:genid1851 "PSI:PI"^^ . . . "Software vendor role."^^ . "MS"^^ . "MS:1001267"^^ . "software vendor"^^ . _:genid1852 . _:genid1852 . _:genid1852 . _:genid1852 "Software vendor role."^^ . _:genid1852 "PSI:PI"^^ . . . _:genid1853 . _:genid1853 . _:genid1853 . _:genid1853 . "Programmer role."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001268"^^ . "programmer"^^ . _:genid1854 . _:genid1854 . _:genid1854 . _:genid1854 "Programmer role."^^ . _:genid1854 "PSI:PI"^^ . _:genid1855 . _:genid1855 . _:genid1855 . _:genid1855 "value-type:xsd:string"^^ . _:genid1855 "The allowed value-type for this CV term."^^ . . . _:genid1856 . _:genid1856 . _:genid1856 . _:genid1856 . "Instrument vendor role."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001269"^^ . "instrument vendor"^^ . _:genid1857 . _:genid1857 . _:genid1857 . _:genid1857 "Instrument vendor role."^^ . _:genid1857 "PSI:PI"^^ . _:genid1858 . _:genid1858 . _:genid1858 . _:genid1858 "value-type:xsd:string"^^ . _:genid1858 "The allowed value-type for this CV term."^^ . . . _:genid1859 . _:genid1859 . _:genid1859 . _:genid1859 . "Lab personnel role."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001270"^^ . "lab personnel"^^ . _:genid1860 . _:genid1860 . _:genid1860 . _:genid1860 "Lab personnel role."^^ . _:genid1860 "PSI:PI"^^ . _:genid1861 . _:genid1861 . _:genid1861 . _:genid1861 "value-type:xsd:string"^^ . _:genid1861 "The allowed value-type for this CV term."^^ . . . "Researcher role."^^ . "MS"^^ . "MS:1001271"^^ . "researcher"^^ . _:genid1862 . _:genid1862 . _:genid1862 . _:genid1862 "Researcher role."^^ . _:genid1862 "PSI:PI"^^ . . . "Regular expression for Arg-C."^^ . "MS"^^ . "MS:1001272"^^ . "(?<=R)(?!P)"^^ . _:genid1863 . _:genid1863 . _:genid1863 . _:genid1863 "Regular expression for Arg-C."^^ . _:genid1863 "PSI:PI"^^ . . . "Regular expression for Asp-N."^^ . "MS"^^ . "MS:1001273"^^ . "(?=[BD])"^^ . _:genid1864 . _:genid1864 . _:genid1864 . _:genid1864 "Regular expression for Asp-N."^^ . _:genid1864 "PSI:PI"^^ . . . "Regular expression for Asp-N-ambic."^^ . "MS"^^ . "MS:1001274"^^ . "(?=[DE])"^^ . _:genid1865 . _:genid1865 . _:genid1865 . _:genid1865 "Regular expression for Asp-N-ambic."^^ . _:genid1865 "PSI:PI"^^ . . . "Source data for this mzIdentML was a ProteinScape SearchEvent."^^ . "MS"^^ . "MS:1001275"^^ . "ProteinScape SearchEvent"^^ . _:genid1866 . _:genid1866 . _:genid1866 . _:genid1866 "Source data for this mzIdentML was a ProteinScape SearchEvent."^^ . _:genid1866 "PSI:PI"^^ . . . "Source data for this mzIdentML was a ProteinScape Gel."^^ . "MS"^^ . "MS:1001276"^^ . "ProteinScape Gel"^^ . _:genid1867 . _:genid1867 . _:genid1867 . _:genid1867 "Source data for this mzIdentML was a ProteinScape Gel."^^ . _:genid1867 "PSI:PI"^^ . . . _:genid1868 . _:genid1868 . _:genid1868 . _:genid1868 . "Specify the regular expression for decoy accession numbers."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001283"^^ . "decoy DB accession regexp"^^ . _:genid1869 . _:genid1869 . _:genid1869 . _:genid1869 "Specify the regular expression for decoy accession numbers."^^ . _:genid1869 "PSI:PI"^^ . _:genid1870 . _:genid1870 . _:genid1870 . _:genid1870 "value-type:xsd:string"^^ . _:genid1870 "The allowed value-type for this CV term."^^ . . . "OBSOLETE The name of the database, the search database was derived from."^^ . "MS"^^ . "MS:1001284"^^ . "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^ . "decoy DB derived from"^^ . "true"^^ . _:genid1871 . _:genid1871 . _:genid1871 . _:genid1871 "OBSOLETE The name of the database, the search database was derived from."^^ . _:genid1871 "PSI:PI"^^ . . . "International Protein Index database for Mus musculus sequences."^^ . "MS"^^ . "MS:1001285"^^ . "database IPI_mouse"^^ . _:genid1872 . _:genid1872 . _:genid1872 . _:genid1872 "International Protein Index database for Mus musculus sequences."^^ . _:genid1872 "PSI:PI"^^ . . . "International Protein Index database for Rattus norvegicus sequences."^^ . "MS"^^ . "MS:1001286"^^ . "database IPI_rat"^^ . _:genid1873 . _:genid1873 . _:genid1873 . _:genid1873 "International Protein Index database for Rattus norvegicus sequences."^^ . _:genid1873 "PSI:PI"^^ . . . "International Protein Index database for Danio rerio sequences."^^ . "MS"^^ . "MS:1001287"^^ . "database IPI_zebrafish"^^ . _:genid1874 . _:genid1874 . _:genid1874 . _:genid1874 "International Protein Index database for Danio rerio sequences."^^ . _:genid1874 "PSI:PI"^^ . . . "International Protein Index database for Gallus gallus sequences."^^ . "MS"^^ . "MS:1001288"^^ . "database IPI_chicken"^^ . _:genid1875 . _:genid1875 . _:genid1875 . _:genid1875 "International Protein Index database for Gallus gallus sequences."^^ . _:genid1875 "PSI:PI"^^ . . . "International Protein Index database for Bos taurus sequences."^^ . "MS"^^ . "MS:1001289"^^ . "database IPI_cow"^^ . _:genid1876 . _:genid1876 . _:genid1876 . _:genid1876 "International Protein Index database for Bos taurus sequences."^^ . _:genid1876 "PSI:PI"^^ . . . "International Protein Index database for Arabidopsis thaliana sequences."^^ . "MS"^^ . "MS:1001290"^^ . "database IPI_arabidopsis"^^ . _:genid1877 . _:genid1877 . _:genid1877 . _:genid1877 "International Protein Index database for Arabidopsis thaliana sequences."^^ . _:genid1877 "PSI:PI"^^ . . "OBSOLETE Decoy database from a non-redundant GenBank sequence database."^^ . "MS"^^ . "MS:1001291"^^ . "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^ . "decoy DB from nr"^^ . "true"^^ . _:genid1878 . _:genid1878 . _:genid1878 . _:genid1878 "OBSOLETE Decoy database from a non-redundant GenBank sequence database."^^ . _:genid1878 "PSI:PI"^^ . . "OBSOLETE Decoy database from a International Protein Index database for Rattus norvegicus."^^ . "MS"^^ . "MS:1001292"^^ . "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^ . "decoy DB from IPI_rat"^^ . "true"^^ . _:genid1879 . _:genid1879 . _:genid1879 . _:genid1879 "OBSOLETE Decoy database from a International Protein Index database for Rattus norvegicus."^^ . _:genid1879 "PSI:PI"^^ . . "OBSOLETE Decoy database from a International Protein Index database for Mus musculus."^^ . "MS"^^ . "MS:1001293"^^ . "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^ . "decoy DB from IPI_mouse"^^ . "true"^^ . _:genid1880 . _:genid1880 . _:genid1880 . _:genid1880 "OBSOLETE Decoy database from a International Protein Index database for Mus musculus."^^ . _:genid1880 "PSI:PI"^^ . . "OBSOLETE Decoy database from a International Protein Index database for Arabidopsis thaliana."^^ . "MS"^^ . "MS:1001294"^^ . "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^ . "decoy DB from IPI_arabidopsis"^^ . "true"^^ . _:genid1881 . _:genid1881 . _:genid1881 . _:genid1881 "OBSOLETE Decoy database from a International Protein Index database for Arabidopsis thaliana."^^ . _:genid1881 "PSI:PI"^^ . . "OBSOLETE Decoy database from an expressed sequence tag nucleotide sequence database."^^ . "MS"^^ . "MS:1001295"^^ . "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^ . "decoy DB from EST"^^ . "true"^^ . _:genid1882 . _:genid1882 . _:genid1882 . _:genid1882 "OBSOLETE Decoy database from an expressed sequence tag nucleotide sequence database."^^ . _:genid1882 "PSI:PI"^^ . . "OBSOLETE Decoy database from a International Protein Index database for Danio rerio."^^ . "MS"^^ . "MS:1001296"^^ . "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^ . "decoy DB from IPI_zebrafish"^^ . "true"^^ . _:genid1883 . _:genid1883 . _:genid1883 . _:genid1883 "OBSOLETE Decoy database from a International Protein Index database for Danio rerio."^^ . _:genid1883 "PSI:PI"^^ . . "OBSOLETE Decoy database from a Swiss-Prot protein sequence database."^^ . "MS"^^ . "MS:1001297"^^ . "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^ . "decoy DB from UniProtKB/Swiss-Prot"^^ . "true"^^ . _:genid1884 . _:genid1884 . _:genid1884 . _:genid1884 "OBSOLETE Decoy database from a Swiss-Prot protein sequence database."^^ . _:genid1884 "PSI:PI"^^ . . "OBSOLETE Decoy database from a International Protein Index database for Gallus gallus."^^ . "MS"^^ . "MS:1001298"^^ . "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^ . "decoy DB from IPI_chicken"^^ . "true"^^ . _:genid1885 . _:genid1885 . _:genid1885 . _:genid1885 "OBSOLETE Decoy database from a International Protein Index database for Gallus gallus."^^ . _:genid1885 "PSI:PI"^^ . . "OBSOLETE Decoy database from a International Protein Index database for Bos taurus."^^ . "MS"^^ . "MS:1001299"^^ . "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^ . "decoy DB from IPI_cow"^^ . "true"^^ . _:genid1886 . _:genid1886 . _:genid1886 . _:genid1886 "OBSOLETE Decoy database from a International Protein Index database for Bos taurus."^^ . _:genid1886 "PSI:PI"^^ . . "OBSOLETE Decoy database from a International Protein Index database for Homo sapiens."^^ . "MS"^^ . "MS:1001300"^^ . "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^ . "decoy DB from IPI_human"^^ . "true"^^ . _:genid1887 . _:genid1887 . _:genid1887 . _:genid1887 "OBSOLETE Decoy database from a International Protein Index database for Homo sapiens."^^ . _:genid1887 "PSI:PI"^^ . . . _:genid1888 . _:genid1888 . _:genid1888 . _:genid1888 . "The rank of the protein in a list sorted by the search engine."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001301"^^ . "protein rank"^^ . _:genid1889 . _:genid1889 . _:genid1889 . _:genid1889 "The rank of the protein in a list sorted by the search engine."^^ . _:genid1889 "PSI:PI"^^ . _:genid1890 . _:genid1890 . _:genid1890 . _:genid1890 "value-type:xsd:int"^^ . _:genid1890 "The allowed value-type for this CV term."^^ . . . "Search engine specific input parameters."^^ . "MS"^^ . "MS:1001302"^^ . "search engine specific input parameter"^^ . _:genid1891 . _:genid1891 . _:genid1891 . _:genid1891 "Search engine specific input parameters."^^ . _:genid1891 "PSI:PI"^^ . . . _:genid1892 . _:genid1892 . _:genid1892 . _:genid1892 . "Endoproteinase Arg-C."^^ . "Clostripain"^^ . "Trypsin/R"^^ . "MS"^^ . "MS:1001303"^^ . "Arg-C"^^ . _:genid1893 . _:genid1893 . _:genid1893 . _:genid1893 "Endoproteinase Arg-C."^^ . _:genid1893 "PSI:PI"^^ . . . _:genid1894 . _:genid1894 . _:genid1894 . _:genid1894 . "Endoproteinase Asp-N."^^ . "MS"^^ . "MS:1001304"^^ . "Asp-N"^^ . _:genid1895 . _:genid1895 . _:genid1895 . _:genid1895 "Endoproteinase Asp-N."^^ . _:genid1895 "PSI:PI"^^ . . . _:genid1896 . _:genid1896 . _:genid1896 . _:genid1896 . "Enzyme Asp-N, Ammonium Bicarbonate (AmBic)."^^ . "MS"^^ . "MS:1001305"^^ . "Asp-N_ambic"^^ . _:genid1897 . _:genid1897 . _:genid1897 . _:genid1897 "Enzyme Asp-N, Ammonium Bicarbonate (AmBic)."^^ . _:genid1897 "PSI:PI"^^ . . . _:genid1898 . _:genid1898 . _:genid1898 . _:genid1898 . "Enzyme chymotrypsin."^^ . "MS"^^ . "MS:1001306"^^ . "Chymotrypsin"^^ . _:genid1899 . _:genid1899 . _:genid1899 . _:genid1899 "Enzyme chymotrypsin."^^ . _:genid1899 "PSI:PI"^^ . . . _:genid1900 . _:genid1900 . _:genid1900 . _:genid1900 . "Cyanogen bromide."^^ . "MS"^^ . "MS:1001307"^^ . "CNBr"^^ . _:genid1901 . _:genid1901 . _:genid1901 . _:genid1901 "Cyanogen bromide."^^ . _:genid1901 "PSI:PI"^^ . . . _:genid1902 . _:genid1902 . _:genid1902 . _:genid1902 . "Formic acid."^^ . "MS"^^ . "MS:1001308"^^ . "Formic_acid"^^ . _:genid1903 . _:genid1903 . _:genid1903 . _:genid1903 "Formic acid."^^ . _:genid1903 "PubChem_Compound:284"^^ . . . _:genid1904 . _:genid1904 . _:genid1904 . _:genid1904 . "Endoproteinase Lys-C."^^ . "Trypsin/K"^^ . "MS"^^ . "MS:1001309"^^ . "Lys-C"^^ . _:genid1905 . _:genid1905 . _:genid1905 . _:genid1905 "Endoproteinase Lys-C."^^ . _:genid1905 "PSI:PI"^^ . . . _:genid1906 . _:genid1906 . _:genid1906 . _:genid1906 . "Proteinase Lys-C/P."^^ . "MS"^^ . "MS:1001310"^^ . "Lys-C/P"^^ . _:genid1907 . _:genid1907 . _:genid1907 . _:genid1907 "Proteinase Lys-C/P."^^ . _:genid1907 "PSI:PI"^^ . . . _:genid1908 . _:genid1908 . _:genid1908 . _:genid1908 . "PepsinA proteinase."^^ . "MS"^^ . "MS:1001311"^^ . "PepsinA"^^ . _:genid1909 . _:genid1909 . _:genid1909 . _:genid1909 "PepsinA proteinase."^^ . _:genid1909 "PSI:PI"^^ . . . _:genid1910 . _:genid1910 . _:genid1910 . _:genid1910 . "Cleavage agent TrypChymo."^^ . "MS"^^ . "MS:1001312"^^ . "TrypChymo"^^ . _:genid1911 . _:genid1911 . _:genid1911 . _:genid1911 "Cleavage agent TrypChymo."^^ . _:genid1911 "PSI:PI"^^ . . . _:genid1912 . _:genid1912 . _:genid1912 . _:genid1912 . "Cleavage agent Trypsin/P."^^ . "MS"^^ . "MS:1001313"^^ . "Trypsin/P"^^ . _:genid1913 . _:genid1913 . _:genid1913 . _:genid1913 "Cleavage agent Trypsin/P."^^ . _:genid1913 "PSI:PI"^^ . . . _:genid1914 . _:genid1914 . _:genid1914 . _:genid1914 . "Cleavage agent V8-DE."^^ . "MS"^^ . "MS:1001314"^^ . "V8-DE"^^ . _:genid1915 . _:genid1915 . _:genid1915 . _:genid1915 "Cleavage agent V8-DE."^^ . _:genid1915 "PSI:PI"^^ . . . _:genid1916 . _:genid1916 . _:genid1916 . _:genid1916 . "Cleavage agent V8-E."^^ . "MS"^^ . "MS:1001315"^^ . "V8-E"^^ . _:genid1917 . _:genid1917 . _:genid1917 . _:genid1917 "Cleavage agent V8-E."^^ . _:genid1917 "PSI:PI"^^ . . . _:genid1918 . _:genid1918 . _:genid1918 . _:genid1918 . "Significance threshold below which the p-value of a peptide match must lie to be considered statistically significant (default 0.05)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001316"^^ . "Mascot:SigThreshold"^^ . _:genid1919 . _:genid1919 . _:genid1919 . _:genid1919 "Significance threshold below which the p-value of a peptide match must lie to be considered statistically significant (default 0.05)."^^ . _:genid1919 "PSI:PI"^^ . _:genid1920 . _:genid1920 . _:genid1920 . _:genid1920 "value-type:xsd:double"^^ . _:genid1920 "The allowed value-type for this CV term."^^ . . . _:genid1921 . _:genid1921 . _:genid1921 . _:genid1921 . "The number of protein hits to display in the report. If 'Auto', all protein hits that have a protein score exceeding the average peptide identity threshold are reported. Otherwise an integer at least 1."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001317"^^ . "Mascot:MaxProteinHits"^^ . _:genid1922 . _:genid1922 . _:genid1922 . _:genid1922 "The number of protein hits to display in the report. If 'Auto', all protein hits that have a protein score exceeding the average peptide identity threshold are reported. Otherwise an integer at least 1."^^ . _:genid1922 "PSI:PI"^^ . _:genid1923 . _:genid1923 . _:genid1923 . _:genid1923 "value-type:xsd:string"^^ . _:genid1923 "The allowed value-type for this CV term."^^ . . . _:genid1924 . _:genid1924 . _:genid1924 . _:genid1924 . "Mascot protein scoring method; either 'Standard' or 'MudPIT'."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001318"^^ . "Mascot:ProteinScoringMethod"^^ . _:genid1925 . _:genid1925 . _:genid1925 . _:genid1925 "Mascot protein scoring method; either 'Standard' or 'MudPIT'."^^ . _:genid1925 "PSI:PI"^^ . _:genid1926 . _:genid1926 . _:genid1926 . _:genid1926 "value-type:xsd:string"^^ . _:genid1926 "The allowed value-type for this CV term."^^ . . . _:genid1927 . _:genid1927 . _:genid1927 . _:genid1927 . "Mascot peptide match ion score threshold. If between 0 and 1, then peptide matches whose expect value exceeds the thresholds are suppressed; if at least 1, then peptide matches whose ion score is below the threshold are suppressed."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001319"^^ . "Mascot:MinMSMSThreshold"^^ . _:genid1928 . _:genid1928 . _:genid1928 . _:genid1928 "Mascot peptide match ion score threshold. If between 0 and 1, then peptide matches whose expect value exceeds the thresholds are suppressed; if at least 1, then peptide matches whose ion score is below the threshold are suppressed."^^ . _:genid1928 "PSI:PI"^^ . _:genid1929 . _:genid1929 . _:genid1929 . _:genid1929 "value-type:xsd:double"^^ . _:genid1929 "The allowed value-type for this CV term."^^ . . . _:genid1930 . _:genid1930 . _:genid1930 . _:genid1930 . "If true, show (sequence or spectrum) same-set proteins. Otherwise they are suppressed."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001320"^^ . "Mascot:ShowHomologousProteinsWithSamePeptides"^^ . _:genid1931 . _:genid1931 . _:genid1931 . _:genid1931 "If true, show (sequence or spectrum) same-set proteins. Otherwise they are suppressed."^^ . _:genid1931 "PSI:PI"^^ . _:genid1932 . _:genid1932 . _:genid1932 . _:genid1932 "value-type:xsd:boolean"^^ . _:genid1932 "The allowed value-type for this CV term."^^ . . . _:genid1933 . _:genid1933 . _:genid1933 . _:genid1933 . "If true, show (sequence or spectrum) sub-set and subsumable proteins. Otherwise they are suppressed."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001321"^^ . "Mascot:ShowHomologousProteinsWithSubsetOfPeptides"^^ . _:genid1934 . _:genid1934 . _:genid1934 . _:genid1934 "If true, show (sequence or spectrum) sub-set and subsumable proteins. Otherwise they are suppressed."^^ . _:genid1934 "PSI:PI"^^ . _:genid1935 . _:genid1935 . _:genid1935 . _:genid1935 "value-type:xsd:boolean"^^ . _:genid1935 "The allowed value-type for this CV term."^^ . . . _:genid1936 . _:genid1936 . _:genid1936 . _:genid1936 . "Only used in Peptide Summary and Select Summary reports. If true, a peptide match must be 'bold red' to be included in the report; bold red means the peptide is a top ranking match in a query and appears for the first time (in linear order) in the list of protein hits."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001322"^^ . "Mascot:RequireBoldRed"^^ . _:genid1937 . _:genid1937 . _:genid1937 . _:genid1937 "Only used in Peptide Summary and Select Summary reports. If true, a peptide match must be 'bold red' to be included in the report; bold red means the peptide is a top ranking match in a query and appears for the first time (in linear order) in the list of protein hits."^^ . _:genid1937 "PSI:PI"^^ . _:genid1938 . _:genid1938 . _:genid1938 . _:genid1938 "value-type:xsd:boolean"^^ . _:genid1938 "The allowed value-type for this CV term."^^ . . . _:genid1939 . _:genid1939 . _:genid1939 . _:genid1939 . "If true, then the search results are against a nucleic acid database and Unigene clustering is enabled. Otherwise UniGene clustering is not in use."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001323"^^ . "Mascot:UseUnigeneClustering"^^ . _:genid1940 . _:genid1940 . _:genid1940 . _:genid1940 "If true, then the search results are against a nucleic acid database and Unigene clustering is enabled. Otherwise UniGene clustering is not in use."^^ . _:genid1940 "PSI:PI"^^ . _:genid1941 . _:genid1941 . _:genid1941 . _:genid1941 "value-type:xsd:boolean"^^ . _:genid1941 "The allowed value-type for this CV term."^^ . . . _:genid1942 . _:genid1942 . _:genid1942 . _:genid1942 . "If true, then the search results are error tolerant and peptide matches from the second pass are included in search results. Otherwise no error tolerant peptide matches are included."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001324"^^ . "Mascot:IncludeErrorTolerantMatches"^^ . _:genid1943 . _:genid1943 . _:genid1943 . _:genid1943 "If true, then the search results are error tolerant and peptide matches from the second pass are included in search results. Otherwise no error tolerant peptide matches are included."^^ . _:genid1943 "http://www.matrixscience.com/help/error_tolerant_help.html"^^ . _:genid1944 . _:genid1944 . _:genid1944 . _:genid1944 "value-type:xsd:boolean"^^ . _:genid1944 "The allowed value-type for this CV term."^^ . . . _:genid1945 . _:genid1945 . _:genid1945 . _:genid1945 . "If true, then the search results are against an automatically generated decoy database and the reported peptide matches and protein hits come from the decoy database. Otherwise peptide matches and protein hits come from the original database."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001325"^^ . "Mascot:ShowDecoyMatches"^^ . _:genid1946 . _:genid1946 . _:genid1946 . _:genid1946 "If true, then the search results are against an automatically generated decoy database and the reported peptide matches and protein hits come from the decoy database. Otherwise peptide matches and protein hits come from the original database."^^ . _:genid1946 "PSI:PI"^^ . _:genid1947 . _:genid1947 . _:genid1947 . _:genid1947 "value-type:xsd:boolean"^^ . _:genid1947 "The allowed value-type for this CV term."^^ . . "OBSOLETE."^^ . "MS"^^ . "MS:1001326"^^ . "This former purgatory term was made obsolete."^^ . "add_others"^^ . "true"^^ . _:genid1948 . _:genid1948 . _:genid1948 . _:genid1948 "OBSOLETE."^^ . _:genid1948 "PSI:PI"^^ . . . _:genid1949 . _:genid1949 . _:genid1949 . _:genid1949 . "OMSSA E-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001328"^^ . "OMSSA:evalue"^^ . _:genid1950 . _:genid1950 . _:genid1950 . _:genid1950 "OMSSA E-value."^^ . _:genid1950 "PSI:PI"^^ . _:genid1951 . _:genid1951 . _:genid1951 . _:genid1951 "value-type:xsd:double"^^ . _:genid1951 "The allowed value-type for this CV term."^^ . . . _:genid1952 . _:genid1952 . _:genid1952 . _:genid1952 . "OMSSA p-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001329"^^ . "OMSSA:pvalue"^^ . _:genid1953 . _:genid1953 . _:genid1953 . _:genid1953 "OMSSA p-value."^^ . _:genid1953 "PSI:PI"^^ . _:genid1954 . _:genid1954 . _:genid1954 . _:genid1954 "value-type:xsd:double"^^ . _:genid1954 "The allowed value-type for this CV term."^^ . . . _:genid1955 . _:genid1955 . _:genid1955 . _:genid1955 . "The X!Tandem expectation value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001330"^^ . "X!Tandem:expect"^^ . _:genid1956 . _:genid1956 . _:genid1956 . _:genid1956 "The X!Tandem expectation value."^^ . _:genid1956 "PSI:PI"^^ . _:genid1957 . _:genid1957 . _:genid1957 . _:genid1957 "value-type:xsd:double"^^ . _:genid1957 "The allowed value-type for this CV term."^^ . . . _:genid1958 . _:genid1958 . _:genid1958 . _:genid1958 . "The X!Tandem hyperscore."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001331"^^ . "X!Tandem:hyperscore"^^ . _:genid1959 . _:genid1959 . _:genid1959 . _:genid1959 "The X!Tandem hyperscore."^^ . _:genid1959 "PSI:PI"^^ . _:genid1960 . _:genid1960 . _:genid1960 . _:genid1960 "value-type:xsd:double"^^ . _:genid1960 "The allowed value-type for this CV term."^^ . . . "Regular expression for Chymotrypsin."^^ . "MS"^^ . "MS:1001332"^^ . "(?<=[FYWL])(?!P)"^^ . _:genid1961 . _:genid1961 . _:genid1961 . _:genid1961 "Regular expression for Chymotrypsin."^^ . _:genid1961 "PSI:PI"^^ . . . "Regular expression for CNBr."^^ . "MS"^^ . "MS:1001333"^^ . "(?<=M)"^^ . _:genid1962 . _:genid1962 . _:genid1962 . _:genid1962 "Regular expression for CNBr."^^ . _:genid1962 "PSI:PI"^^ . . . "Regular expression for formic acid."^^ . "MS"^^ . "MS:1001334"^^ . "((?<=D))|((?=D))"^^ . _:genid1963 . _:genid1963 . _:genid1963 . _:genid1963 "Regular expression for formic acid."^^ . _:genid1963 "PSI:PI"^^ . . . "Regular expression for Lys-C."^^ . "MS"^^ . "MS:1001335"^^ . "(?<=K)(?!P)"^^ . _:genid1964 . _:genid1964 . _:genid1964 . _:genid1964 "Regular expression for Lys-C."^^ . _:genid1964 "PSI:PI"^^ . . . "Regular expression for Lys-C/P."^^ . "MS"^^ . "MS:1001336"^^ . "(?<=K)"^^ . _:genid1965 . _:genid1965 . _:genid1965 . _:genid1965 "Regular expression for Lys-C/P."^^ . _:genid1965 "PSI:PI"^^ . . . "Regular expression for PepsinA."^^ . "MS"^^ . "MS:1001337"^^ . "(?<=[FL])"^^ . _:genid1966 . _:genid1966 . _:genid1966 . _:genid1966 "Regular expression for PepsinA."^^ . _:genid1966 "PSI:PI"^^ . . . "Regular expression for TrypChymo."^^ . "MS"^^ . "MS:1001338"^^ . "(?<=[FYWLKR])(?!P)"^^ . _:genid1967 . _:genid1967 . _:genid1967 . _:genid1967 "Regular expression for TrypChymo."^^ . _:genid1967 "PSI:PI"^^ . . . "Regular expression for Trypsin/P."^^ . "MS"^^ . "MS:1001339"^^ . "(?<=[KR])"^^ . _:genid1968 . _:genid1968 . _:genid1968 . _:genid1968 "Regular expression for Trypsin/P."^^ . _:genid1968 "PSI:PI"^^ . . . "Regular expression for V8-DE."^^ . "MS"^^ . "MS:1001340"^^ . "(?<=[BDEZ])(?!P)"^^ . _:genid1969 . _:genid1969 . _:genid1969 . _:genid1969 "Regular expression for V8-DE."^^ . _:genid1969 "PSI:PI"^^ . . . "Regular expression for V8-E."^^ . "MS"^^ . "MS:1001341"^^ . "(?<=[EZ])(?!P)"^^ . _:genid1970 . _:genid1970 . _:genid1970 . _:genid1970 "Regular expression for V8-E."^^ . _:genid1970 "PSI:PI"^^ . . . "Details about a single database sequence."^^ . "MS"^^ . "MS:1001342"^^ . "database sequence details"^^ . _:genid1971 . _:genid1971 . _:genid1971 . _:genid1971 "Details about a single database sequence."^^ . _:genid1971 "PSI:PI"^^ . . . "The sequence is a nucleic acid sequence."^^ . "MS"^^ . "MS:1001343"^^ . "NA sequence"^^ . _:genid1972 . _:genid1972 . _:genid1972 . _:genid1972 "The sequence is a nucleic acid sequence."^^ . _:genid1972 "PSI:PI"^^ . . . "The sequence is a amino acid sequence."^^ . "MS"^^ . "MS:1001344"^^ . "AA sequence"^^ . _:genid1973 . _:genid1973 . _:genid1973 . _:genid1973 "The sequence is a amino acid sequence."^^ . _:genid1973 "PSI:PI"^^ . . . "Children of this term specify the source of the mass table used."^^ . "MS"^^ . "MS:1001345"^^ . "mass table source"^^ . _:genid1974 . _:genid1974 . _:genid1974 . _:genid1974 "Children of this term specify the source of the mass table used."^^ . _:genid1974 "PSI:PI"^^ . . . "The masses used in the mass table are taken from AAIndex."^^ . "MS"^^ . "MS:1001346"^^ . "AAIndex mass table"^^ . _:genid1975 . _:genid1975 . _:genid1975 . _:genid1975 "The masses used in the mass table are taken from AAIndex."^^ . _:genid1975 "PSI:PI"^^ . . . "The children of this term define file formats of the sequence database used."^^ . "MS"^^ . "MS:1001347"^^ . "database file formats"^^ . _:genid1976 . _:genid1976 . _:genid1976 . _:genid1976 "The children of this term define file formats of the sequence database used."^^ . _:genid1976 "PSI:PI"^^ . . . "The sequence database was stored in the FASTA format."^^ . "MS"^^ . "MS:1001348"^^ . "FASTA format"^^ . _:genid1977 . _:genid1977 . _:genid1977 . _:genid1977 "The sequence database was stored in the FASTA format."^^ . _:genid1977 "PSI:PI"^^ . . . "The sequence database was stored in the Abstract Syntax Notation 1 format."^^ . "MS"^^ . "MS:1001349"^^ . "ASN.1"^^ . _:genid1978 . _:genid1978 . _:genid1978 . _:genid1978 "The sequence database was stored in the Abstract Syntax Notation 1 format."^^ . _:genid1978 "PSI:PI"^^ . . . "The sequence database was stored in the NCBI formatdb (*.p*) format."^^ . "MS"^^ . "MS:1001350"^^ . "NCBI *.p*"^^ . _:genid1979 . _:genid1979 . _:genid1979 . _:genid1979 "The sequence database was stored in the NCBI formatdb (*.p*) format."^^ . _:genid1979 "PSI:PI"^^ . . . "ClustalW ALN (multiple alignment) format."^^ . "MS"^^ . "MS:1001351"^^ . "clustal aln"^^ . _:genid1980 . _:genid1980 . _:genid1980 . _:genid1980 "ClustalW ALN (multiple alignment) format."^^ . _:genid1980 "PSI:PI"^^ . . . "EMBL entry format."^^ . "MS"^^ . "MS:1001352"^^ . "embl em"^^ . _:genid1981 . _:genid1981 . _:genid1981 . _:genid1981 "EMBL entry format."^^ . _:genid1981 "PSI:PI"^^ . . . "The NBRF PIR was used as format."^^ . "MS"^^ . "MS:1001353"^^ . "NBRF PIR"^^ . _:genid1982 . _:genid1982 . _:genid1982 . _:genid1982 "The NBRF PIR was used as format."^^ . _:genid1982 "PSI:PI"^^ . . _:genid1983 . _:genid1983 . _:genid1983 . _:genid1983 . "Root node for options for the mass table used."^^ . "MS"^^ . "MS:1001354"^^ . "mass table options"^^ . _:genid1984 . _:genid1984 . _:genid1984 . _:genid1984 "Root node for options for the mass table used."^^ . _:genid1984 "PSI:PI"^^ . . . "Descriptions of peptides."^^ . "MS"^^ . "MS:1001355"^^ . "peptide descriptions"^^ . _:genid1985 . _:genid1985 . _:genid1985 . _:genid1985 "Descriptions of peptides."^^ . _:genid1985 "PSI:PI"^^ . . . "Descriptions of the input spectra."^^ . "MS"^^ . "MS:1001356"^^ . "spectrum descriptions"^^ . _:genid1986 . _:genid1986 . _:genid1986 . _:genid1986 "Descriptions of the input spectra."^^ . _:genid1986 "PSI:PI"^^ . . . "Description of the quality of the input spectrum."^^ . "MS"^^ . "MS:1001357"^^ . "spectrum quality descriptions"^^ . _:genid1987 . _:genid1987 . _:genid1987 . _:genid1987 "Description of the quality of the input spectrum."^^ . _:genid1987 "PSI:PI"^^ . . . _:genid1988 . _:genid1988 . _:genid1988 . _:genid1988 . "This term reports the quality of the spectrum assigned by msmsEval."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001358"^^ . "msmsEval quality"^^ . _:genid1989 . _:genid1989 . _:genid1989 . _:genid1989 "This term reports the quality of the spectrum assigned by msmsEval."^^ . _:genid1989 "PSI:PI"^^ . _:genid1990 . _:genid1990 . _:genid1990 . _:genid1990 "value-type:xsd:double"^^ . _:genid1990 "The allowed value-type for this CV term."^^ . . _:genid1991 . _:genid1991 . _:genid1991 . _:genid1991 . "Children of this term describe ambiguous residues."^^ . "MS"^^ . "MS:1001359"^^ . "ambiguous residues"^^ . _:genid1992 . _:genid1992 . _:genid1992 . _:genid1992 "Children of this term describe ambiguous residues."^^ . _:genid1992 "PSI:PI"^^ . . . _:genid1993 . _:genid1993 . _:genid1993 . _:genid1993 . "List of standard residue one letter codes which are used to replace a non-standard."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001360"^^ . "alternate single letter codes"^^ . _:genid1994 . _:genid1994 . _:genid1994 . _:genid1994 "List of standard residue one letter codes which are used to replace a non-standard."^^ . _:genid1994 "PSI:PI"^^ . _:genid1995 . _:genid1995 . _:genid1995 . _:genid1995 "value-type:xsd:string"^^ . _:genid1995 "The allowed value-type for this CV term."^^ . . . _:genid1996 . _:genid1996 . _:genid1996 . _:genid1996 . _:genid1997 . _:genid1997 . _:genid1997 . _:genid1997 . "List of masses a non-standard letter code is replaced with."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001361"^^ . "alternate mass"^^ . _:genid1998 . _:genid1998 . _:genid1998 . _:genid1998 "List of masses a non-standard letter code is replaced with."^^ . _:genid1998 "PSI:PI"^^ . _:genid1999 . _:genid1999 . _:genid1999 . _:genid1999 "value-type:xsd:double"^^ . _:genid1999 "The allowed value-type for this CV term."^^ . . . _:genid2000 . _:genid2000 . _:genid2000 . _:genid2000 . "The number of unmatched peaks."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001362"^^ . "number of unmatched peaks"^^ . _:genid2001 . _:genid2001 . _:genid2001 . _:genid2001 "The number of unmatched peaks."^^ . _:genid2001 "PSI:PI"^^ . _:genid2002 . _:genid2002 . _:genid2002 . _:genid2002 "value-type:xsd:nonNegativeInteger"^^ . _:genid2002 "The allowed value-type for this CV term."^^ . . . "A peptide matching only one."^^ . "MS"^^ . "MS:1001363"^^ . "peptide unique to one protein"^^ . _:genid2003 . _:genid2003 . _:genid2003 . _:genid2003 "A peptide matching only one."^^ . _:genid2003 "PSI:PI"^^ . . . _:genid2004 . _:genid2004 . _:genid2004 . _:genid2004 . _:genid2005 . _:genid2005 . _:genid2005 . _:genid2005 . "Estimation of the global false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001364"^^ . "peptide sequence-level global FDR"^^ . _:genid2006 . _:genid2006 . _:genid2006 . _:genid2006 "Estimation of the global false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^ . _:genid2006 "PSI:PI"^^ . _:genid2007 . _:genid2007 . _:genid2007 . _:genid2007 "value-type:xsd:double"^^ . _:genid2007 "The allowed value-type for this CV term."^^ . . . "Fragmentation information, type of product: internal yb ion."^^ . "MS"^^ . "MS:1001365"^^ . "frag: internal yb ion"^^ . _:genid2008 . _:genid2008 . _:genid2008 . _:genid2008 "Fragmentation information, type of product: internal yb ion."^^ . _:genid2008 "PSI:PI"^^ . . . "Fragmentation information, type of product: internal ya ion."^^ . "MS"^^ . "MS:1001366"^^ . "frag: internal ya ion"^^ . _:genid2009 . _:genid2009 . _:genid2009 . _:genid2009 "Fragmentation information, type of product: internal ya ion."^^ . _:genid2009 "PSI:PI"^^ . . . "Fragmentation information, type of product: z+1 ion."^^ . "MS"^^ . "MS:1001367"^^ . "frag: z+1 ion"^^ . _:genid2010 . _:genid2010 . _:genid2010 . _:genid2010 "Fragmentation information, type of product: z+1 ion."^^ . _:genid2010 "PSI:PI"^^ . . . "Fragmentation information, type of product: z+2 ion."^^ . "MS"^^ . "MS:1001368"^^ . "frag: z+2 ion"^^ . _:genid2011 . _:genid2011 . _:genid2011 . _:genid2011 "Fragmentation information, type of product: z+2 ion."^^ . _:genid2011 "PSI:PI"^^ . . . "Simple text file format of \"m/z [intensity]\" values for a PMF (or single MS2) search."^^ . "MS"^^ . "MS:1001369"^^ . "text format"^^ . _:genid2012 . _:genid2012 . _:genid2012 . _:genid2012 "Simple text file format of \"m/z [intensity]\" values for a PMF (or single MS2) search."^^ . _:genid2012 "PSI:PI"^^ . . . _:genid2013 . _:genid2013 . _:genid2013 . _:genid2013 . "The Mascot result 'homology threshold'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001370"^^ . "Mascot:homology threshold"^^ . _:genid2014 . _:genid2014 . _:genid2014 . _:genid2014 "The Mascot result 'homology threshold'."^^ . _:genid2014 "PSI:PI"^^ . _:genid2015 . _:genid2015 . _:genid2015 . _:genid2015 "value-type:xsd:double"^^ . _:genid2015 "The allowed value-type for this CV term."^^ . . . _:genid2016 . _:genid2016 . _:genid2016 . _:genid2016 . "The Mascot result 'identity threshold'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001371"^^ . "Mascot:identity threshold"^^ . _:genid2017 . _:genid2017 . _:genid2017 . _:genid2017 "The Mascot result 'identity threshold'."^^ . _:genid2017 "PSI:PI"^^ . _:genid2018 . _:genid2018 . _:genid2018 . _:genid2018 "value-type:xsd:double"^^ . _:genid2018 "The allowed value-type for this CV term."^^ . . . _:genid2019 . _:genid2019 . _:genid2019 . _:genid2019 . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001372"^^ . "SEQUEST:Sequences"^^ . _:genid2020 . _:genid2020 . _:genid2020 . _:genid2020 "value-type:xsd:positiveInteger"^^ . _:genid2020 "The allowed value-type for this CV term."^^ . . . _:genid2021 . _:genid2021 . _:genid2021 . _:genid2021 . "SEQUEST total ion current."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001373"^^ . "SEQUEST:TIC"^^ . _:genid2022 . _:genid2022 . _:genid2022 . _:genid2022 "SEQUEST total ion current."^^ . _:genid2022 "PSI:PI"^^ . _:genid2023 . _:genid2023 . _:genid2023 . _:genid2023 "value-type:xsd:double"^^ . _:genid2023 "The allowed value-type for this CV term."^^ . . . _:genid2024 . _:genid2024 . _:genid2024 . _:genid2024 . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001374"^^ . "SEQUEST:Sum"^^ . _:genid2025 . _:genid2025 . _:genid2025 . _:genid2025 "value-type:xsd:double"^^ . _:genid2025 "The allowed value-type for this CV term."^^ . . . _:genid2026 . _:genid2026 . _:genid2026 . _:genid2026 . "The instrument type parameter value in Phenyx."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001375"^^ . "Phenyx:Instrument Type"^^ . _:genid2027 . _:genid2027 . _:genid2027 . _:genid2027 "The instrument type parameter value in Phenyx."^^ . _:genid2027 "PSI:PI"^^ . _:genid2028 . _:genid2028 . _:genid2028 . _:genid2028 "value-type:xsd:string"^^ . _:genid2028 "The allowed value-type for this CV term."^^ . . . _:genid2029 . _:genid2029 . _:genid2029 . _:genid2029 . "The selected scoring model in Phenyx."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001376"^^ . "Phenyx:Scoring Model"^^ . _:genid2030 . _:genid2030 . _:genid2030 . _:genid2030 "The selected scoring model in Phenyx."^^ . _:genid2030 "PSI:PI"^^ . _:genid2031 . _:genid2031 . _:genid2031 . _:genid2031 "value-type:xsd:string"^^ . _:genid2031 "The allowed value-type for this CV term."^^ . . . _:genid2032 . _:genid2032 . _:genid2032 . _:genid2032 . "The default parent charge value in Phenyx."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001377"^^ . "Phenyx:Default Parent Charge"^^ . _:genid2033 . _:genid2033 . _:genid2033 . _:genid2033 "The default parent charge value in Phenyx."^^ . _:genid2033 "PSI:PI"^^ . _:genid2034 . _:genid2034 . _:genid2034 . _:genid2034 "value-type:xsd:string"^^ . _:genid2034 "The allowed value-type for this CV term."^^ . . . _:genid2035 . _:genid2035 . _:genid2035 . _:genid2035 . "The parameter in Phenyx that specifies if the experimental charge state is to be considered as correct."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001378"^^ . "Phenyx:Trust Parent Charge"^^ . _:genid2036 . _:genid2036 . _:genid2036 . _:genid2036 "The parameter in Phenyx that specifies if the experimental charge state is to be considered as correct."^^ . _:genid2036 "PSI:PI"^^ . _:genid2037 . _:genid2037 . _:genid2037 . _:genid2037 "value-type:xsd:string"^^ . _:genid2037 "The allowed value-type for this CV term."^^ . . . _:genid2038 . _:genid2038 . _:genid2038 . _:genid2038 . "The turbo mode parameter in Phenyx."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001379"^^ . "Phenyx:Turbo"^^ . _:genid2039 . _:genid2039 . _:genid2039 . _:genid2039 "The turbo mode parameter in Phenyx."^^ . _:genid2039 "PSI:PI"^^ . _:genid2040 . _:genid2040 . _:genid2040 . _:genid2040 "value-type:xsd:boolean"^^ . _:genid2040 "The allowed value-type for this CV term."^^ . . . _:genid2041 . _:genid2041 . _:genid2041 . _:genid2041 . "The maximal allowed fragment m/z error filter considered in the turbo mode of Phenyx."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001380"^^ . "Phenyx:Turbo:ErrorTol"^^ . _:genid2042 . _:genid2042 . _:genid2042 . _:genid2042 "The maximal allowed fragment m/z error filter considered in the turbo mode of Phenyx."^^ . _:genid2042 "PSI:PI"^^ . _:genid2043 . _:genid2043 . _:genid2043 . _:genid2043 "value-type:xsd:double"^^ . _:genid2043 "The allowed value-type for this CV term."^^ . . . _:genid2044 . _:genid2044 . _:genid2044 . _:genid2044 . "The minimal peptide sequence coverage value, expressed in percent, considered in the turbo mode of Phenyx."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001381"^^ . "Phenyx:Turbo:Coverage"^^ . _:genid2045 . _:genid2045 . _:genid2045 . _:genid2045 "The minimal peptide sequence coverage value, expressed in percent, considered in the turbo mode of Phenyx."^^ . _:genid2045 "PSI:PI"^^ . _:genid2046 . _:genid2046 . _:genid2046 . _:genid2046 "value-type:xsd:double"^^ . _:genid2046 "The allowed value-type for this CV term."^^ . . . _:genid2047 . _:genid2047 . _:genid2047 . _:genid2047 . "The list of ion series considered in the turbo mode of Phenyx."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001382"^^ . "Phenyx:Turbo:Series"^^ . _:genid2048 . _:genid2048 . _:genid2048 . _:genid2048 "The list of ion series considered in the turbo mode of Phenyx."^^ . _:genid2048 "PSI:PI"^^ . _:genid2049 . _:genid2049 . _:genid2049 . _:genid2049 "value-type:xsd:string"^^ . _:genid2049 "The allowed value-type for this CV term."^^ . . . _:genid2050 . _:genid2050 . _:genid2050 . _:genid2050 . "The minimal number of residues for a peptide to be considered for a valid identification in Phenyx."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001383"^^ . "Phenyx:MinPepLength"^^ . _:genid2051 . _:genid2051 . _:genid2051 . _:genid2051 "The minimal number of residues for a peptide to be considered for a valid identification in Phenyx."^^ . _:genid2051 "PSI:PI"^^ . _:genid2052 . _:genid2052 . _:genid2052 . _:genid2052 "value-type:xsd:positiveInteger"^^ . _:genid2052 "The allowed value-type for this CV term."^^ . . . _:genid2053 . _:genid2053 . _:genid2053 . _:genid2053 . "The minimal peptide z-score for a peptide to be considered for a valid identification in Phenyx."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001384"^^ . "Phenyx:MinPepzscore"^^ . _:genid2054 . _:genid2054 . _:genid2054 . _:genid2054 "The minimal peptide z-score for a peptide to be considered for a valid identification in Phenyx."^^ . _:genid2054 "PSI:PI"^^ . _:genid2055 . _:genid2055 . _:genid2055 . _:genid2055 "value-type:xsd:double"^^ . _:genid2055 "The allowed value-type for this CV term."^^ . . . _:genid2056 . _:genid2056 . _:genid2056 . _:genid2056 . "The maximal peptide p-value for a peptide to be considered for a valid identification in Phenyx."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001385"^^ . "Phenyx:MaxPepPvalue"^^ . _:genid2057 . _:genid2057 . _:genid2057 . _:genid2057 "The maximal peptide p-value for a peptide to be considered for a valid identification in Phenyx."^^ . _:genid2057 "PSI:PI"^^ . _:genid2058 . _:genid2058 . _:genid2058 . _:genid2058 "value-type:xsd:double"^^ . _:genid2058 "The allowed value-type for this CV term."^^ . . . _:genid2059 . _:genid2059 . _:genid2059 . _:genid2059 . "The minimal protein score required for a protein database entry to be displayed in the list of identified proteins in Phenyx."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001386"^^ . "Phenyx:AC Score"^^ . _:genid2060 . _:genid2060 . _:genid2060 . _:genid2060 "The minimal protein score required for a protein database entry to be displayed in the list of identified proteins in Phenyx."^^ . _:genid2060 "PSI:PI"^^ . _:genid2061 . _:genid2061 . _:genid2061 . _:genid2061 "value-type:xsd:double"^^ . _:genid2061 "The allowed value-type for this CV term."^^ . . . _:genid2062 . _:genid2062 . _:genid2062 . _:genid2062 . "The parameter in Phenyx that specifies if the conflict resolution algorithm is to be used."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001387"^^ . "Phenyx:Conflict Resolution"^^ . _:genid2063 . _:genid2063 . _:genid2063 . _:genid2063 "The parameter in Phenyx that specifies if the conflict resolution algorithm is to be used."^^ . _:genid2063 "PSI:PI"^^ . _:genid2064 . _:genid2064 . _:genid2064 . _:genid2064 "value-type:xsd:boolean"^^ . _:genid2064 "The allowed value-type for this CV term."^^ . . . _:genid2065 . _:genid2065 . _:genid2065 . _:genid2065 . "The primary sequence database identifier of a protein in Phenyx."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001388"^^ . "Phenyx:AC"^^ . _:genid2066 . _:genid2066 . _:genid2066 . _:genid2066 "The primary sequence database identifier of a protein in Phenyx."^^ . _:genid2066 "PSI:PI"^^ . _:genid2067 . _:genid2067 . _:genid2067 . _:genid2067 "value-type:xsd:string"^^ . _:genid2067 "The allowed value-type for this CV term."^^ . . . _:genid2068 . _:genid2068 . _:genid2068 . _:genid2068 . "A secondary sequence database identifier of a protein in Phenyx."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001389"^^ . "Phenyx:ID"^^ . _:genid2069 . _:genid2069 . _:genid2069 . _:genid2069 "A secondary sequence database identifier of a protein in Phenyx."^^ . _:genid2069 "PSI:PI"^^ . _:genid2070 . _:genid2070 . _:genid2070 . _:genid2070 "value-type:xsd:string"^^ . _:genid2070 "The allowed value-type for this CV term."^^ . . . _:genid2071 . _:genid2071 . _:genid2071 . _:genid2071 . "The protein score of a protein match in Phenyx."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001390"^^ . "Phenyx:Score"^^ . _:genid2072 . _:genid2072 . _:genid2072 . _:genid2072 "The protein score of a protein match in Phenyx."^^ . _:genid2072 "PSI:PI"^^ . _:genid2073 . _:genid2073 . _:genid2073 . _:genid2073 "value-type:xsd:double"^^ . _:genid2073 "The allowed value-type for this CV term."^^ . . . _:genid2074 . _:genid2074 . _:genid2074 . _:genid2074 . "First number of phenyx result \"#Peptides\"."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001391"^^ . "Phenyx:Peptides1"^^ . _:genid2075 . _:genid2075 . _:genid2075 . _:genid2075 "First number of phenyx result \"#Peptides\"."^^ . _:genid2075 "PSI:PI"^^ . _:genid2076 . _:genid2076 . _:genid2076 . _:genid2076 "value-type:xsd:positiveInteger"^^ . _:genid2076 "The allowed value-type for this CV term."^^ . . . _:genid2077 . _:genid2077 . _:genid2077 . _:genid2077 . "Second number of phenyx result \"#Peptides\"."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001392"^^ . "Phenyx:Peptides2"^^ . _:genid2078 . _:genid2078 . _:genid2078 . _:genid2078 "Second number of phenyx result \"#Peptides\"."^^ . _:genid2078 "PSI:PI"^^ . _:genid2079 . _:genid2079 . _:genid2079 . _:genid2079 "value-type:xsd:positiveInteger"^^ . _:genid2079 "The allowed value-type for this CV term."^^ . . . _:genid2080 . _:genid2080 . _:genid2080 . _:genid2080 . "The value of the automatic peptide acceptance filter in Phenyx."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001393"^^ . "Phenyx:Auto"^^ . _:genid2081 . _:genid2081 . _:genid2081 . _:genid2081 "The value of the automatic peptide acceptance filter in Phenyx."^^ . _:genid2081 "PSI:PI"^^ . _:genid2082 . _:genid2082 . _:genid2082 . _:genid2082 "value-type:xsd:boolean"^^ . _:genid2082 "The allowed value-type for this CV term."^^ . . . . _:genid2083 . _:genid2083 . _:genid2083 . _:genid2083 . "The value of the user-defined peptide acceptance filter in Phenyx."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001394"^^ . "Phenyx:User"^^ . _:genid2084 . _:genid2084 . _:genid2084 . _:genid2084 "The value of the user-defined peptide acceptance filter in Phenyx."^^ . _:genid2084 "PSI:PI"^^ . _:genid2085 . _:genid2085 . _:genid2085 . _:genid2085 "value-type:xsd:boolean"^^ . _:genid2085 "The allowed value-type for this CV term."^^ . . . _:genid2086 . _:genid2086 . _:genid2086 . _:genid2086 . "The z-score value of a peptide sequence match in Phenyx."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001395"^^ . "Phenyx:Pepzscore"^^ . _:genid2087 . _:genid2087 . _:genid2087 . _:genid2087 "The z-score value of a peptide sequence match in Phenyx."^^ . _:genid2087 "PSI:PI"^^ . _:genid2088 . _:genid2088 . _:genid2088 . _:genid2088 "value-type:xsd:double"^^ . _:genid2088 "The allowed value-type for this CV term."^^ . . . . _:genid2089 . _:genid2089 . _:genid2089 . _:genid2089 . "The p-value of a peptide sequence match in Phenyx."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001396"^^ . "Phenyx:PepPvalue"^^ . _:genid2090 . _:genid2090 . _:genid2090 . _:genid2090 "The p-value of a peptide sequence match in Phenyx."^^ . _:genid2090 "PSI:PI"^^ . _:genid2091 . _:genid2091 . _:genid2091 . _:genid2091 "value-type:xsd:double"^^ . _:genid2091 "The allowed value-type for this CV term."^^ . . . _:genid2092 . _:genid2092 . _:genid2092 . _:genid2092 . "The number of missed cleavages of a peptide sequence in Phenyx."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001397"^^ . "Phenyx:NumberOfMC"^^ . _:genid2093 . _:genid2093 . _:genid2093 . _:genid2093 "The number of missed cleavages of a peptide sequence in Phenyx."^^ . _:genid2093 "PSI:PI"^^ . _:genid2094 . _:genid2094 . _:genid2094 . _:genid2094 "value-type:xsd:positiveInteger"^^ . _:genid2094 "The allowed value-type for this CV term."^^ . . . . _:genid2095 . _:genid2095 . _:genid2095 . _:genid2095 . "The expression of the nature and position(s) of modified residue(s) on a matched peptide sequence in Phenyx."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001398"^^ . "Phenyx:Modif"^^ . _:genid2096 . _:genid2096 . _:genid2096 . _:genid2096 "The expression of the nature and position(s) of modified residue(s) on a matched peptide sequence in Phenyx."^^ . _:genid2096 "PSI:PI"^^ . _:genid2097 . _:genid2097 . _:genid2097 . _:genid2097 "value-type:xsd:string"^^ . _:genid2097 "The allowed value-type for this CV term."^^ . . . "Source file for this mzIdentML was in OMSSA csv file format."^^ . "MS"^^ . "MS:1001399"^^ . "OMSSA csv format"^^ . _:genid2098 . _:genid2098 . _:genid2098 . _:genid2098 "Source file for this mzIdentML was in OMSSA csv file format."^^ . _:genid2098 "PSI:PI"^^ . . . "Source file for this mzIdentML was in OMSSA xml file format."^^ . "MS"^^ . "MS:1001400"^^ . "OMSSA xml format"^^ . _:genid2099 . _:genid2099 . _:genid2099 . _:genid2099 "Source file for this mzIdentML was in OMSSA xml file format."^^ . _:genid2099 "PSI:PI"^^ . . . "Source file for this mzIdentML was in X!Tandem xml file format."^^ . "MS"^^ . "MS:1001401"^^ . "X!Tandem xml format"^^ . _:genid2100 . _:genid2100 . _:genid2100 . _:genid2100 "Source file for this mzIdentML was in X!Tandem xml file format."^^ . _:genid2100 "PSI:PI"^^ . . _:genid2101 . _:genid2101 . _:genid2101 . _:genid2101 . "This subsection describes terms which can describe details of spectrum identification results."^^ . "MS"^^ . "MS:1001405"^^ . "spectrum identification result details"^^ . _:genid2102 . _:genid2102 . _:genid2102 . _:genid2102 "This subsection describes terms which can describe details of spectrum identification results."^^ . _:genid2102 "PSI:PI"^^ . . . "Parameter information, type of product: internal yb ion."^^ . "MS"^^ . "MS:1001406"^^ . "param: internal yb ion"^^ . _:genid2103 . _:genid2103 . _:genid2103 . _:genid2103 "Parameter information, type of product: internal yb ion."^^ . _:genid2103 "PSI:PI"^^ . . . "Parameter information, type of product: internal ya ion."^^ . "MS"^^ . "MS:1001407"^^ . "param: internal ya ion"^^ . _:genid2104 . _:genid2104 . _:genid2104 . _:genid2104 "Parameter information, type of product: internal ya ion."^^ . _:genid2104 "PSI:PI"^^ . . . "Parameter information, type of product: z+1 ion."^^ . "MS"^^ . "MS:1001408"^^ . "param: z+1 ion"^^ . _:genid2105 . _:genid2105 . _:genid2105 . _:genid2105 "Parameter information, type of product: z+1 ion."^^ . _:genid2105 "PSI:PI"^^ . . . "Parameter information, type of product: z+2 ion."^^ . "MS"^^ . "MS:1001409"^^ . "param: z+2 ion"^^ . _:genid2106 . _:genid2106 . _:genid2106 . _:genid2106 "Parameter information, type of product: z+2 ion."^^ . _:genid2106 "PSI:PI"^^ . . . _:genid2107 . _:genid2107 . _:genid2107 . _:genid2107 . "The translation start codons used to translate the nucleotides to amino acids."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001410"^^ . "translation start codons"^^ . _:genid2108 . _:genid2108 . _:genid2108 . _:genid2108 "The translation start codons used to translate the nucleotides to amino acids."^^ . _:genid2108 "PSI:PI"^^ . _:genid2109 . _:genid2109 . _:genid2109 . _:genid2109 "value-type:xsd:string"^^ . _:genid2109 "The allowed value-type for this CV term."^^ . . . "Specification of the search tolerance."^^ . "MS"^^ . "MS:1001411"^^ . "search tolerance specification"^^ . _:genid2110 . _:genid2110 . _:genid2110 . _:genid2110 "Specification of the search tolerance."^^ . _:genid2110 "PSI:PI"^^ . . . _:genid2111 . _:genid2111 . _:genid2111 . _:genid2111 . _:genid2112 . _:genid2112 . _:genid2112 . _:genid2112 . _:genid2113 . _:genid2113 . _:genid2113 . _:genid2113 . _:genid2114 . _:genid2114 . _:genid2114 . _:genid2114 . _:genid2115 . _:genid2115 . _:genid2115 . _:genid2115 . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001412"^^ . "search tolerance plus value"^^ . _:genid2116 . _:genid2116 . _:genid2116 . _:genid2116 "value-type:xsd:double"^^ . _:genid2116 "The allowed value-type for this CV term."^^ . . . _:genid2117 . _:genid2117 . _:genid2117 . _:genid2117 . _:genid2118 . _:genid2118 . _:genid2118 . _:genid2118 . _:genid2119 . _:genid2119 . _:genid2119 . _:genid2119 . _:genid2120 . _:genid2120 . _:genid2120 . _:genid2120 . _:genid2121 . _:genid2121 . _:genid2121 . _:genid2121 . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001413"^^ . "search tolerance minus value"^^ . _:genid2122 . _:genid2122 . _:genid2122 . _:genid2122 "value-type:xsd:double"^^ . _:genid2122 "The allowed value-type for this CV term."^^ . . . _:genid2123 . _:genid2123 . _:genid2123 . _:genid2123 . "OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute from an MGF input file."^^ . "MS:1000797"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001414"^^ . "MGF scans"^^ . "true"^^ . _:genid2124 . _:genid2124 . _:genid2124 . _:genid2124 "OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute from an MGF input file."^^ . _:genid2124 "PSI:PI"^^ . _:genid2125 . _:genid2125 . _:genid2125 . _:genid2125 "value-type:xsd:string"^^ . _:genid2125 "The allowed value-type for this CV term."^^ . . . _:genid2126 . _:genid2126 . _:genid2126 . _:genid2126 . "OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw scans attribute from an MGF input file."^^ . "MS:1000798"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001415"^^ . "MGF raw scans"^^ . "true"^^ . _:genid2127 . _:genid2127 . _:genid2127 . _:genid2127 "OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw scans attribute from an MGF input file."^^ . _:genid2127 "PSI:PI"^^ . _:genid2128 . _:genid2128 . _:genid2128 . _:genid2128 "value-type:xsd:string"^^ . _:genid2128 "The allowed value-type for this CV term."^^ . . . _:genid2129 . _:genid2129 . _:genid2129 . _:genid2129 . "OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from different input file formats, e.g. MGF TITLE."^^ . "MS:1000796"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001416"^^ . "spectrum title"^^ . "true"^^ . _:genid2130 . _:genid2130 . _:genid2130 . _:genid2130 "OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from different input file formats, e.g. MGF TITLE."^^ . _:genid2130 "PSI:PI"^^ . _:genid2131 . _:genid2131 . _:genid2131 . _:genid2131 "value-type:xsd:string"^^ . _:genid2131 "The allowed value-type for this CV term."^^ . . . _:genid2132 . _:genid2132 . _:genid2132 . _:genid2132 . "SpectraST dot product of two spectra, measuring spectral similarity."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001417"^^ . "SpectraST:dot"^^ . _:genid2133 . _:genid2133 . _:genid2133 . _:genid2133 "SpectraST dot product of two spectra, measuring spectral similarity."^^ . _:genid2133 "PSI:PI"^^ . _:genid2134 . _:genid2134 . _:genid2134 . _:genid2134 "value-type:xsd:double"^^ . _:genid2134 "The allowed value-type for this CV term."^^ . . . _:genid2135 . _:genid2135 . _:genid2135 . _:genid2135 . "SpectraST measure of how much of the dot product is dominated by a few peaks."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001418"^^ . "SpectraST:dot_bias"^^ . _:genid2136 . _:genid2136 . _:genid2136 . _:genid2136 "SpectraST measure of how much of the dot product is dominated by a few peaks."^^ . _:genid2136 "PSI:PI"^^ . _:genid2137 . _:genid2137 . _:genid2137 . _:genid2137 "value-type:xsd:double"^^ . _:genid2137 "The allowed value-type for this CV term."^^ . . . _:genid2138 . _:genid2138 . _:genid2138 . _:genid2138 . "SpectraST spectrum score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001419"^^ . "SpectraST:discriminant score F"^^ . _:genid2139 . _:genid2139 . _:genid2139 . _:genid2139 "SpectraST spectrum score."^^ . _:genid2139 "PSI:PI"^^ . _:genid2140 . _:genid2140 . _:genid2140 . _:genid2140 "value-type:xsd:double"^^ . _:genid2140 "The allowed value-type for this CV term."^^ . . . _:genid2141 . _:genid2141 . _:genid2141 . _:genid2141 . "SpectraST normalised difference between dot product of top hit and runner-up."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001420"^^ . "SpectraST:delta"^^ . _:genid2142 . _:genid2142 . _:genid2142 . _:genid2142 "SpectraST normalised difference between dot product of top hit and runner-up."^^ . _:genid2142 "PSI:PI"^^ . _:genid2143 . _:genid2143 . _:genid2143 . _:genid2143 "value-type:xsd:double"^^ . _:genid2143 "The allowed value-type for this CV term."^^ . . . "The XML-based pepXML file format for encoding PSM information, created and maintained by the Trans-Proteomic Pipeline developers."^^ . "MS"^^ . "MS:1001421"^^ . "pepXML format"^^ . _:genid2144 . _:genid2144 . _:genid2144 . _:genid2144 "The XML-based pepXML file format for encoding PSM information, created and maintained by the Trans-Proteomic Pipeline developers."^^ . _:genid2144 "PSI:PI"^^ . . . "The XML-based protXML file format for encoding protein identifications, created and maintained by the Trans-Proteomic Pipeline developers."^^ . "MS"^^ . "MS:1001422"^^ . "protXML format"^^ . _:genid2145 . _:genid2145 . _:genid2145 . _:genid2145 "The XML-based protXML file format for encoding protein identifications, created and maintained by the Trans-Proteomic Pipeline developers."^^ . _:genid2145 "PSI:PI"^^ . . . _:genid2146 . _:genid2146 . _:genid2146 . _:genid2146 . "A URL that describes the translation table used to translate the nucleotides to amino acids."^^ . "value-type:xsd:anyURI"^^ . "MS"^^ . "MS:1001423"^^ . "translation table description"^^ . _:genid2147 . _:genid2147 . _:genid2147 . _:genid2147 "A URL that describes the translation table used to translate the nucleotides to amino acids."^^ . _:genid2147 "PSI:PI"^^ . _:genid2148 . _:genid2148 . _:genid2148 . _:genid2148 "value-type:xsd:anyURI"^^ . _:genid2148 "The allowed value-type for this CV term."^^ . . . _:genid2149 . _:genid2149 . _:genid2149 . _:genid2149 . "Name of the used method in the ProteinExtractor algorithm."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001424"^^ . "ProteinExtractor:Methodname"^^ . _:genid2150 . _:genid2150 . _:genid2150 . _:genid2150 "Name of the used method in the ProteinExtractor algorithm."^^ . _:genid2150 "PSI:PI"^^ . _:genid2151 . _:genid2151 . _:genid2151 . _:genid2151 "value-type:xsd:string"^^ . _:genid2151 "The allowed value-type for this CV term."^^ . . . _:genid2152 . _:genid2152 . _:genid2152 . _:genid2152 . "Flag indicating if a non redundant scoring should be generated."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001425"^^ . "ProteinExtractor:GenerateNonRedundant"^^ . _:genid2153 . _:genid2153 . _:genid2153 . _:genid2153 "Flag indicating if a non redundant scoring should be generated."^^ . _:genid2153 "PSI:PI"^^ . _:genid2154 . _:genid2154 . _:genid2154 . _:genid2154 "value-type:xsd:boolean"^^ . _:genid2154 "The allowed value-type for this CV term."^^ . . . _:genid2155 . _:genid2155 . _:genid2155 . _:genid2155 . "Flag indicating if identified proteins should be included."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001426"^^ . "ProteinExtractor:IncludeIdentified"^^ . _:genid2156 . _:genid2156 . _:genid2156 . _:genid2156 "Flag indicating if identified proteins should be included."^^ . _:genid2156 "PSI:PI"^^ . _:genid2157 . _:genid2157 . _:genid2157 . _:genid2157 "value-type:xsd:boolean"^^ . _:genid2157 "The allowed value-type for this CV term."^^ . . . _:genid2158 . _:genid2158 . _:genid2158 . _:genid2158 . "The maximum number of proteins to consider."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001427"^^ . "ProteinExtractor:MaxNumberOfProteins"^^ . _:genid2159 . _:genid2159 . _:genid2159 . _:genid2159 "The maximum number of proteins to consider."^^ . _:genid2159 "PSI:PI"^^ . _:genid2160 . _:genid2160 . _:genid2160 . _:genid2160 "value-type:xsd:positiveInteger"^^ . _:genid2160 "The allowed value-type for this CV term."^^ . . . _:genid2161 . _:genid2161 . _:genid2161 . _:genid2161 . "The maximum considered mass for a protein."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001428"^^ . "ProteinExtractor:MaxProteinMass"^^ . _:genid2162 . _:genid2162 . _:genid2162 . _:genid2162 "The maximum considered mass for a protein."^^ . _:genid2162 "PSI:PI"^^ . _:genid2163 . _:genid2163 . _:genid2163 . _:genid2163 "value-type:xsd:double"^^ . _:genid2163 "The allowed value-type for this CV term."^^ . . . _:genid2164 . _:genid2164 . _:genid2164 . _:genid2164 . "The minimum number of proteins to consider."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001429"^^ . "ProteinExtractor:MinNumberOfPeptides"^^ . _:genid2165 . _:genid2165 . _:genid2165 . _:genid2165 "The minimum number of proteins to consider."^^ . _:genid2165 "PSI:PI"^^ . _:genid2166 . _:genid2166 . _:genid2166 . _:genid2166 "value-type:xsd:positiveInteger"^^ . _:genid2166 "The allowed value-type for this CV term."^^ . . . _:genid2167 . _:genid2167 . _:genid2167 . _:genid2167 . "Flag indicating to include Mascot scoring for calculation of the ProteinExtractor meta score."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001430"^^ . "ProteinExtractor:UseMascot"^^ . _:genid2168 . _:genid2168 . _:genid2168 . _:genid2168 "Flag indicating to include Mascot scoring for calculation of the ProteinExtractor meta score."^^ . _:genid2168 "PSI:PI"^^ . _:genid2169 . _:genid2169 . _:genid2169 . _:genid2169 "value-type:xsd:boolean"^^ . _:genid2169 "The allowed value-type for this CV term."^^ . . . _:genid2170 . _:genid2170 . _:genid2170 . _:genid2170 . "Only peptides with scores higher than that threshold are taken into account in Mascot scoring for calculation of the ProteinExtractor meta score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001431"^^ . "ProteinExtractor:MascotPeptideScoreThreshold"^^ . _:genid2171 . _:genid2171 . _:genid2171 . _:genid2171 "Only peptides with scores higher than that threshold are taken into account in Mascot scoring for calculation of the ProteinExtractor meta score."^^ . _:genid2171 "DOI:10.4172/jpb.1000056"^^ . _:genid2172 . _:genid2172 . _:genid2172 . _:genid2172 "value-type:xsd:double"^^ . _:genid2172 "The allowed value-type for this CV term."^^ . . . _:genid2173 . _:genid2173 . _:genid2173 . _:genid2173 . "In the final result each protein must have at least one peptide above this Mascot score threshold in ProteinExtractor meta score calculation."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001432"^^ . "ProteinExtractor:MascotUniqueScore"^^ . _:genid2174 . _:genid2174 . _:genid2174 . _:genid2174 "In the final result each protein must have at least one peptide above this Mascot score threshold in ProteinExtractor meta score calculation."^^ . _:genid2174 "DOI:10.4172/jpb.1000056"^^ . _:genid2175 . _:genid2175 . _:genid2175 . _:genid2175 "value-type:xsd:double"^^ . _:genid2175 "The allowed value-type for this CV term."^^ . . . _:genid2176 . _:genid2176 . _:genid2176 . _:genid2176 . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001433"^^ . "ProteinExtractor:MascotUseIdentityScore"^^ . _:genid2177 . _:genid2177 . _:genid2177 . _:genid2177 "value-type:xsd:boolean"^^ . _:genid2177 "The allowed value-type for this CV term."^^ . . . _:genid2178 . _:genid2178 . _:genid2178 . _:genid2178 . "Influence of Mascot search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001434"^^ . "ProteinExtractor:MascotWeighting"^^ . _:genid2179 . _:genid2179 . _:genid2179 . _:genid2179 "Influence of Mascot search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^ . _:genid2179 "DOI:10.4172/jpb.1000056"^^ . _:genid2180 . _:genid2180 . _:genid2180 . _:genid2180 "value-type:xsd:double"^^ . _:genid2180 "The allowed value-type for this CV term."^^ . . . _:genid2181 . _:genid2181 . _:genid2181 . _:genid2181 . "Flag indicating to include SEQUEST scoring for calculation of the ProteinExtractor meta score."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001435"^^ . "ProteinExtractor:UseSequest"^^ . _:genid2182 . _:genid2182 . _:genid2182 . _:genid2182 "Flag indicating to include SEQUEST scoring for calculation of the ProteinExtractor meta score."^^ . _:genid2182 "PSI:PI"^^ . _:genid2183 . _:genid2183 . _:genid2183 . _:genid2183 "value-type:xsd:boolean"^^ . _:genid2183 "The allowed value-type for this CV term."^^ . . . _:genid2184 . _:genid2184 . _:genid2184 . _:genid2184 . "Only peptides with scores higher than that threshold are taken into account in SEQUEST scoring for calculation of the ProteinExtractor meta score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001436"^^ . "ProteinExtractor:SequestPeptideScoreThreshold"^^ . _:genid2185 . _:genid2185 . _:genid2185 . _:genid2185 "Only peptides with scores higher than that threshold are taken into account in SEQUEST scoring for calculation of the ProteinExtractor meta score."^^ . _:genid2185 "DOI:10.4172/jpb.1000056"^^ . _:genid2186 . _:genid2186 . _:genid2186 . _:genid2186 "value-type:xsd:double"^^ . _:genid2186 "The allowed value-type for this CV term."^^ . . . _:genid2187 . _:genid2187 . _:genid2187 . _:genid2187 . "In the final result each protein must have at least one peptide above this SEQUEST score threshold in ProteinExtractor meta score calculation."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001437"^^ . "ProteinExtractor:SequestUniqueScore"^^ . _:genid2188 . _:genid2188 . _:genid2188 . _:genid2188 "In the final result each protein must have at least one peptide above this SEQUEST score threshold in ProteinExtractor meta score calculation."^^ . _:genid2188 "DOI:10.4172/jpb.1000056"^^ . _:genid2189 . _:genid2189 . _:genid2189 . _:genid2189 "value-type:xsd:double"^^ . _:genid2189 "The allowed value-type for this CV term."^^ . . . _:genid2190 . _:genid2190 . _:genid2190 . _:genid2190 . "Influence of SEQUEST search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001438"^^ . "ProteinExtractor:SequestWeighting"^^ . _:genid2191 . _:genid2191 . _:genid2191 . _:genid2191 "Influence of SEQUEST search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^ . _:genid2191 "DOI:10.4172/jpb.1000056"^^ . _:genid2192 . _:genid2192 . _:genid2192 . _:genid2192 "value-type:xsd:double"^^ . _:genid2192 "The allowed value-type for this CV term."^^ . . . _:genid2193 . _:genid2193 . _:genid2193 . _:genid2193 . "Flag indicating to include ProteinSolver scoring for calculation of the ProteinExtractor meta score."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001439"^^ . "ProteinExtractor:UseProteinSolver"^^ . _:genid2194 . _:genid2194 . _:genid2194 . _:genid2194 "Flag indicating to include ProteinSolver scoring for calculation of the ProteinExtractor meta score."^^ . _:genid2194 "PSI:PI"^^ . _:genid2195 . _:genid2195 . _:genid2195 . _:genid2195 "value-type:xsd:boolean"^^ . _:genid2195 "The allowed value-type for this CV term."^^ . . . _:genid2196 . _:genid2196 . _:genid2196 . _:genid2196 . "Only peptides with scores higher than that threshold are taken into account in ProteinSolver scoring for calculation of the ProteinExtractor meta score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001440"^^ . "ProteinExtractor:ProteinSolverPeptideScoreThreshold"^^ . _:genid2197 . _:genid2197 . _:genid2197 . _:genid2197 "Only peptides with scores higher than that threshold are taken into account in ProteinSolver scoring for calculation of the ProteinExtractor meta score."^^ . _:genid2197 "DOI:10.4172/jpb.1000056"^^ . _:genid2198 . _:genid2198 . _:genid2198 . _:genid2198 "value-type:xsd:double"^^ . _:genid2198 "The allowed value-type for this CV term."^^ . . . _:genid2199 . _:genid2199 . _:genid2199 . _:genid2199 . "In the final result each protein must have at least one peptide above this ProteinSolver score threshold in ProteinExtractor meta score calculation."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001441"^^ . "ProteinExtractor:ProteinSolverUniqueScore"^^ . _:genid2200 . _:genid2200 . _:genid2200 . _:genid2200 "In the final result each protein must have at least one peptide above this ProteinSolver score threshold in ProteinExtractor meta score calculation."^^ . _:genid2200 "DOI:10.4172/jpb.1000056"^^ . _:genid2201 . _:genid2201 . _:genid2201 . _:genid2201 "value-type:xsd:double"^^ . _:genid2201 "The allowed value-type for this CV term."^^ . . . _:genid2202 . _:genid2202 . _:genid2202 . _:genid2202 . "Influence of ProteinSolver search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001442"^^ . "ProteinExtractor:ProteinSolverWeighting"^^ . _:genid2203 . _:genid2203 . _:genid2203 . _:genid2203 "Influence of ProteinSolver search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^ . _:genid2203 "DOI:10.4172/jpb.1000056"^^ . _:genid2204 . _:genid2204 . _:genid2204 . _:genid2204 "value-type:xsd:double"^^ . _:genid2204 "The allowed value-type for this CV term."^^ . . . _:genid2205 . _:genid2205 . _:genid2205 . _:genid2205 . "Flag indicating to include Phenyx scoring for calculation of the ProteinExtractor meta score."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001443"^^ . "ProteinExtractor:UsePhenyx"^^ . _:genid2206 . _:genid2206 . _:genid2206 . _:genid2206 "Flag indicating to include Phenyx scoring for calculation of the ProteinExtractor meta score."^^ . _:genid2206 "PSI:PI"^^ . _:genid2207 . _:genid2207 . _:genid2207 . _:genid2207 "value-type:xsd:boolean"^^ . _:genid2207 "The allowed value-type for this CV term."^^ . . . _:genid2208 . _:genid2208 . _:genid2208 . _:genid2208 . "Only peptides with scores higher than that threshold are taken into account in Phenyx scoring for calculation of the ProteinExtractor meta score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001444"^^ . "ProteinExtractor:PhenyxPeptideScoreThreshold"^^ . _:genid2209 . _:genid2209 . _:genid2209 . _:genid2209 "Only peptides with scores higher than that threshold are taken into account in Phenyx scoring for calculation of the ProteinExtractor meta score."^^ . _:genid2209 "DOI:10.4172/jpb.1000056"^^ . _:genid2210 . _:genid2210 . _:genid2210 . _:genid2210 "value-type:xsd:double"^^ . _:genid2210 "The allowed value-type for this CV term."^^ . . . _:genid2211 . _:genid2211 . _:genid2211 . _:genid2211 . "In the final result each protein must have at least one peptide above this Phenyx score threshold in ProteinExtractor meta score calculation."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001445"^^ . "ProteinExtractor:PhenyxUniqueScore"^^ . _:genid2212 . _:genid2212 . _:genid2212 . _:genid2212 "In the final result each protein must have at least one peptide above this Phenyx score threshold in ProteinExtractor meta score calculation."^^ . _:genid2212 "DOI:10.4172/jpb.1000056"^^ . _:genid2213 . _:genid2213 . _:genid2213 . _:genid2213 "value-type:xsd:double"^^ . _:genid2213 "The allowed value-type for this CV term."^^ . . . _:genid2214 . _:genid2214 . _:genid2214 . _:genid2214 . "Influence of Phenyx search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001446"^^ . "ProteinExtractor:PhenyxWeighting"^^ . _:genid2215 . _:genid2215 . _:genid2215 . _:genid2215 "Influence of Phenyx search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor."^^ . _:genid2215 "DOI:10.4172/jpb.1000056"^^ . _:genid2216 . _:genid2216 . _:genid2216 . _:genid2216 "value-type:xsd:double"^^ . _:genid2216 "The allowed value-type for this CV term."^^ . . . _:genid2217 . _:genid2217 . _:genid2217 . _:genid2217 . "False-discovery rate threshold for proteins."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001447"^^ . "prot:FDR threshold"^^ . _:genid2218 . _:genid2218 . _:genid2218 . _:genid2218 "False-discovery rate threshold for proteins."^^ . _:genid2218 "PSI:PI"^^ . _:genid2219 . _:genid2219 . _:genid2219 . _:genid2219 "value-type:xsd:double"^^ . _:genid2219 "The allowed value-type for this CV term."^^ . . . _:genid2220 . _:genid2220 . _:genid2220 . _:genid2220 . "False-discovery rate threshold for peptides."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001448"^^ . "pep:FDR threshold"^^ . _:genid2221 . _:genid2221 . _:genid2221 . _:genid2221 "False-discovery rate threshold for peptides."^^ . _:genid2221 "PSI:PI"^^ . _:genid2222 . _:genid2222 . _:genid2222 . _:genid2222 "value-type:xsd:double"^^ . _:genid2222 "The allowed value-type for this CV term."^^ . . . _:genid2223 . _:genid2223 . _:genid2223 . _:genid2223 . "Threshold for OMSSA e-value for quality estimation."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001449"^^ . "OMSSA e-value threshold"^^ . _:genid2224 . _:genid2224 . _:genid2224 . _:genid2224 "Threshold for OMSSA e-value for quality estimation."^^ . _:genid2224 "PSI:PI"^^ . _:genid2225 . _:genid2225 . _:genid2225 . _:genid2225 "value-type:xsd:double"^^ . _:genid2225 "The allowed value-type for this CV term."^^ . . . "Details of decoy generation and database structure."^^ . "MS"^^ . "MS:1001450"^^ . "decoy DB details"^^ . _:genid2226 . _:genid2226 . _:genid2226 . _:genid2226 "Details of decoy generation and database structure."^^ . _:genid2226 "PSI:PI"^^ . . . _:genid2227 . _:genid2227 . _:genid2227 . _:genid2227 . "Name of algorithm used for decoy generation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001451"^^ . "decoy DB generation algorithm"^^ . _:genid2228 . _:genid2228 . _:genid2228 . _:genid2228 "Name of algorithm used for decoy generation."^^ . _:genid2228 "PSI:PI"^^ . _:genid2229 . _:genid2229 . _:genid2229 . _:genid2229 "value-type:xsd:string"^^ . _:genid2229 "The allowed value-type for this CV term."^^ . . . "Decoy type: Amino acids of protein sequences are used in a random order."^^ . "MS"^^ . "MS:1001452"^^ . "decoy DB type shuffle"^^ . _:genid2230 . _:genid2230 . _:genid2230 . _:genid2230 "Decoy type: Amino acids of protein sequences are used in a random order."^^ . _:genid2230 "PSI:PI"^^ . . . "Decoy database composition: database contains only decoy entries."^^ . "MS"^^ . "MS:1001453"^^ . "DB composition only decoy"^^ . _:genid2231 . _:genid2231 . _:genid2231 . _:genid2231 "Decoy database composition: database contains only decoy entries."^^ . _:genid2231 "PSI:PI"^^ . . . "Decoy entries are generated during the search, not explicitly stored in a database (like Mascot Decoy)."^^ . "MS"^^ . "MS:1001454"^^ . "quality estimation with implicite decoy sequences"^^ . _:genid2232 . _:genid2232 . _:genid2232 . _:genid2232 "Decoy entries are generated during the search, not explicitly stored in a database (like Mascot Decoy)."^^ . _:genid2232 "PSI:PI"^^ . . . "Acquisition software."^^ . "MS"^^ . "MS:1001455"^^ . "acquisition software"^^ . _:genid2233 . _:genid2233 . _:genid2233 . _:genid2233 "Acquisition software."^^ . _:genid2233 "PSI:MS"^^ . . . "Analysis software."^^ . "MS"^^ . "MS:1001456"^^ . "analysis software"^^ . _:genid2234 . _:genid2234 . _:genid2234 . _:genid2234 "Analysis software."^^ . _:genid2234 "PSI:MS"^^ . . . "Data processing software."^^ . "MS"^^ . "MS:1001457"^^ . "data processing software"^^ . _:genid2235 . _:genid2235 . _:genid2235 . _:genid2235 "Data processing software."^^ . _:genid2235 "PSI:MS"^^ . . _:genid2236 . _:genid2236 . _:genid2236 . _:genid2236 . "Vocabularies describing the spectrum generation information."^^ . "MS"^^ . "MS:1001458"^^ . "spectrum generation information"^^ . _:genid2237 . _:genid2237 . _:genid2237 . _:genid2237 "Vocabularies describing the spectrum generation information."^^ . _:genid2237 "PSI:PI"^^ . . _:genid2238 . _:genid2238 . _:genid2238 . _:genid2238 . "Format of data files."^^ . "MS"^^ . "MS:1001459"^^ . "file format"^^ . _:genid2239 . _:genid2239 . _:genid2239 . _:genid2239 "Format of data files."^^ . _:genid2239 "PSI:MS"^^ . . . "This term should be given if the modification was unknown."^^ . "MS"^^ . "MS:1001460"^^ . "unknown modification"^^ . _:genid2240 . _:genid2240 . _:genid2240 . _:genid2240 "This term should be given if the modification was unknown."^^ . _:genid2240 "PSI:PI"^^ . . . "Greylag identification software."^^ . "MS"^^ . "MS:1001461"^^ . "greylag"^^ . _:genid2241 . _:genid2241 . _:genid2241 . _:genid2241 "Greylag identification software."^^ . _:genid2241 "http://greylag.org/"^^ . . . "The sequence database was stored in the PEFF (PSI enhanced FastA file) format."^^ . "MS"^^ . "MS:1001462"^^ . "PEFF format"^^ . _:genid2242 . _:genid2242 . _:genid2242 . _:genid2242 "The sequence database was stored in the PEFF (PSI enhanced FastA file) format."^^ . _:genid2242 "PSI:PI"^^ . . . . "Phenyx open XML file format."^^ . "MS"^^ . "MS:1001463"^^ . "Phenyx XML format"^^ . _:genid2243 . _:genid2243 . _:genid2243 . _:genid2243 "Phenyx open XML file format."^^ . _:genid2243 "PSI:PI"^^ . . . "DTASelect file format."^^ . "MS"^^ . "MS:1001464"^^ . "DTASelect format"^^ . _:genid2244 . _:genid2244 . _:genid2244 . _:genid2244 "DTASelect file format."^^ . _:genid2244 "PMID:12643522"^^ . _:genid2244 "http://www.scripps.edu/cravatt/protomap/dtaselect_instructions.html"^^ . . . "MS2 file format for MS2 spectral data."^^ . "MS"^^ . "MS:1001466"^^ . "MS2 format"^^ . _:genid2245 . _:genid2245 . _:genid2245 . _:genid2245 "MS2 file format for MS2 spectral data."^^ . _:genid2245 "DOI:10.1002/rcm.1603"^^ . _:genid2245 "PMID:15317041"^^ . _:genid2245 "http://fields.scripps.edu/sequest/SQTFormat.html"^^ . . . _:genid2246 . _:genid2246 . _:genid2246 . _:genid2246 . "This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001467"^^ . "taxonomy: NCBI TaxID"^^ . _:genid2247 . _:genid2247 . _:genid2247 . _:genid2247 "This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens."^^ . _:genid2247 "PSI:PI"^^ . _:genid2248 . _:genid2248 . _:genid2248 . _:genid2248 "value-type:xsd:positiveInteger"^^ . _:genid2248 "The allowed value-type for this CV term."^^ . . . _:genid2249 . _:genid2249 . _:genid2249 . _:genid2249 . "This term is used if a common name is specified, e.g. human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001468"^^ . "taxonomy: common name"^^ . _:genid2250 . _:genid2250 . _:genid2250 . _:genid2250 "This term is used if a common name is specified, e.g. human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible."^^ . _:genid2250 "PSI:PI"^^ . _:genid2251 . _:genid2251 . _:genid2251 . _:genid2251 "value-type:xsd:string"^^ . _:genid2251 "The allowed value-type for this CV term."^^ . . . _:genid2252 . _:genid2252 . _:genid2252 . _:genid2252 . "This term is used if a scientific name is specified, e.g. Homo sapiens. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001469"^^ . "taxonomy: scientific name"^^ . _:genid2253 . _:genid2253 . _:genid2253 . _:genid2253 "This term is used if a scientific name is specified, e.g. Homo sapiens. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible."^^ . _:genid2253 "PSI:PI"^^ . _:genid2254 . _:genid2254 . _:genid2254 . _:genid2254 "value-type:xsd:string"^^ . _:genid2254 "The allowed value-type for this CV term."^^ . . . _:genid2255 . _:genid2255 . _:genid2255 . _:genid2255 . "This term is used if a swiss prot taxonomy id is specified, e.g. Human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001470"^^ . "taxonomy: Swiss-Prot ID"^^ . _:genid2256 . _:genid2256 . _:genid2256 . _:genid2256 "This term is used if a swiss prot taxonomy id is specified, e.g. Human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible."^^ . _:genid2256 "PSI:PI"^^ . _:genid2257 . _:genid2257 . _:genid2257 . _:genid2257 "value-type:xsd:string"^^ . _:genid2257 "The allowed value-type for this CV term."^^ . . _:genid2258 . _:genid2258 . _:genid2258 . _:genid2258 . "The children of this term can be used to describe modifications."^^ . "MS"^^ . "MS:1001471"^^ . "peptide modification details"^^ . _:genid2259 . _:genid2259 . _:genid2259 . _:genid2259 "The children of this term can be used to describe modifications."^^ . _:genid2259 "PSI:PI"^^ . . . "Representation of an array of the measurements of a selectively monitored ion versus time."^^ . "SIM chromatogram"^^ . "MS"^^ . "MS:1001472"^^ . "selected ion monitoring chromatogram"^^ . _:genid2260 . _:genid2260 . _:genid2260 . _:genid2260 "Representation of an array of the measurements of a selectively monitored ion versus time."^^ . _:genid2260 "PSI:MS"^^ . . . "Representation of an array of the measurements of a selectively monitored reaction versus time."^^ . "SRM chromatogram"^^ . "MS"^^ . "MS:1001473"^^ . "selected reaction monitoring chromatogram"^^ . _:genid2261 . _:genid2261 . _:genid2261 . _:genid2261 "Representation of an array of the measurements of a selectively monitored reaction versus time."^^ . _:genid2261 "PSI:MS"^^ . . . "OBSOLETE Representation of an array of the measurements of a series of monitored reactions versus time."^^ . "CRM chromatogram"^^ . "MS"^^ . "MS:1001474"^^ . "This term was made obsolete because, by design, it can't be properly represented in mzML 1.1. CRM experiments must be represented in a spectrum-centric way."^^ . "consecutive reaction monitoring chromatogram"^^ . "true"^^ . _:genid2262 . _:genid2262 . _:genid2262 . _:genid2262 "OBSOLETE Representation of an array of the measurements of a series of monitored reactions versus time."^^ . _:genid2262 "PSI:MS"^^ . . . "Open Mass Spectrometry Search Algorithm was used to analyze the spectra."^^ . "MS"^^ . "MS:1001475"^^ . "OMSSA"^^ . _:genid2263 . _:genid2263 . _:genid2263 . _:genid2263 "Open Mass Spectrometry Search Algorithm was used to analyze the spectra."^^ . _:genid2263 "PSI:PI"^^ . . . "X!Tandem was used to analyze the spectra."^^ . "MS"^^ . "MS:1001476"^^ . "X!Tandem"^^ . _:genid2264 . _:genid2264 . _:genid2264 . _:genid2264 "X!Tandem was used to analyze the spectra."^^ . _:genid2264 "PSI:PI"^^ . . . "SpectraST was used to analyze the spectra."^^ . "MS"^^ . "MS:1001477"^^ . "SpectraST"^^ . _:genid2265 . _:genid2265 . _:genid2265 . _:genid2265 "SpectraST was used to analyze the spectra."^^ . _:genid2265 "PSI:PI"^^ . . . "Mascot Parser was used to analyze the spectra."^^ . "MS"^^ . "MS:1001478"^^ . "Mascot Parser"^^ . _:genid2266 . _:genid2266 . _:genid2266 . _:genid2266 "Mascot Parser was used to analyze the spectra."^^ . _:genid2266 "PSI:PI"^^ . . . "Sequence of zero or more non-zero ASCII characters terminated by a single null (0) byte."^^ . "MS"^^ . "MS:1001479"^^ . "null-terminated ASCII string"^^ . _:genid2267 . _:genid2267 . _:genid2267 . _:genid2267 "Sequence of zero or more non-zero ASCII characters terminated by a single null (0) byte."^^ . _:genid2267 "PSI:MS"^^ . . . "Native format defined by jobRun=xsd:nonNegativeInteger spotLabel=xsd:string spectrum=xsd:nonNegativeInteger."^^ . "MS"^^ . "MS:1001480"^^ . "SCIEX TOF/TOF nativeID format"^^ . _:genid2268 . _:genid2268 . _:genid2268 . _:genid2268 "Native format defined by jobRun=xsd:nonNegativeInteger spotLabel=xsd:string spectrum=xsd:nonNegativeInteger."^^ . _:genid2268 "PSI:MS"^^ . . . "Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database."^^ . "MS"^^ . "MS:1001481"^^ . "SCIEX TOF/TOF database"^^ . _:genid2269 . _:genid2269 . _:genid2269 . _:genid2269 "Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database."^^ . _:genid2269 "PSI:MS"^^ . . . "SCIEX 5800 TOF-TOF Analyzer."^^ . "MS"^^ . "MS:1001482"^^ . "5800 TOF/TOF"^^ . _:genid2270 . _:genid2270 . _:genid2270 . _:genid2270 "SCIEX 5800 TOF-TOF Analyzer."^^ . _:genid2270 "PSI:MS"^^ . . . . . . "SCIEX or Applied Biosystems software for TOF/TOF data acquisition and analysis."^^ . "MS"^^ . "MS:1001483"^^ . "SCIEX TOF/TOF Series Explorer Software"^^ . _:genid2271 . _:genid2271 . _:genid2271 . _:genid2271 "SCIEX or Applied Biosystems software for TOF/TOF data acquisition and analysis."^^ . _:genid2271 "PSI:MS"^^ . . . "Normalization of data point intensities."^^ . "MS"^^ . "MS:1001484"^^ . "intensity normalization"^^ . _:genid2272 . _:genid2272 . _:genid2272 . _:genid2272 "Normalization of data point intensities."^^ . _:genid2272 "PSI:MS"^^ . . . "Calibration of data point m/z positions."^^ . "MS"^^ . "MS:1001485"^^ . "m/z calibration"^^ . _:genid2273 . _:genid2273 . _:genid2273 . _:genid2273 "Calibration of data point m/z positions."^^ . _:genid2273 "PSI:MS"^^ . . . "Filtering out part of the data."^^ . "MS"^^ . "MS:1001486"^^ . "data filtering"^^ . _:genid2274 . _:genid2274 . _:genid2274 . _:genid2274 "Filtering out part of the data."^^ . _:genid2274 "PSI:MS"^^ . . . . "An algorithm for protein determination/assembly integrated into Bruker's ProteinScape."^^ . "MS"^^ . "MS:1001487"^^ . "ProteinExtractor"^^ . _:genid2275 . _:genid2275 . _:genid2275 . _:genid2275 "An algorithm for protein determination/assembly integrated into Bruker's ProteinScape."^^ . _:genid2275 "PSI:MS"^^ . . . . "Mascot Distiller."^^ . "MS"^^ . "MS:1001488"^^ . "Mascot Distiller"^^ . _:genid2276 . _:genid2276 . _:genid2276 . _:genid2276 "Mascot Distiller."^^ . _:genid2276 "PSI:PI"^^ . . . "Mascot Integra."^^ . "MS"^^ . "MS:1001489"^^ . "Mascot Integra"^^ . _:genid2277 . _:genid2277 . _:genid2277 . _:genid2277 "Mascot Integra."^^ . _:genid2277 "PSI:PI"^^ . . . "Percolator."^^ . "MS"^^ . "MS:1001490"^^ . "Percolator"^^ . _:genid2278 . _:genid2278 . _:genid2278 . _:genid2278 "Percolator."^^ . _:genid2278 "PSI:PI"^^ . . . _:genid2279 . _:genid2279 . _:genid2279 . _:genid2279 . "Percolator:Q value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001491"^^ . "percolator:Q value"^^ . _:genid2280 . _:genid2280 . _:genid2280 . _:genid2280 "Percolator:Q value."^^ . _:genid2280 "PSI:PI"^^ . _:genid2281 . _:genid2281 . _:genid2281 . _:genid2281 "value-type:xsd:double"^^ . _:genid2281 "The allowed value-type for this CV term."^^ . . . _:genid2282 . _:genid2282 . _:genid2282 . _:genid2282 . "Percolator:score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001492"^^ . "percolator:score"^^ . _:genid2283 . _:genid2283 . _:genid2283 . _:genid2283 "Percolator:score."^^ . _:genid2283 "PSI:PI"^^ . _:genid2284 . _:genid2284 . _:genid2284 . _:genid2284 "value-type:xsd:double"^^ . _:genid2284 "The allowed value-type for this CV term."^^ . . . _:genid2285 . _:genid2285 . _:genid2285 . _:genid2285 . "Posterior error probability."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001493"^^ . "percolator:PEP"^^ . _:genid2286 . _:genid2286 . _:genid2286 . _:genid2286 "Posterior error probability."^^ . _:genid2286 "PSI:PI"^^ . _:genid2287 . _:genid2287 . _:genid2287 . _:genid2287 "value-type:xsd:double"^^ . _:genid2287 "The allowed value-type for this CV term."^^ . . . "In case no threshold was used."^^ . "MS"^^ . "MS:1001494"^^ . "no threshold"^^ . _:genid2288 . _:genid2288 . _:genid2288 . _:genid2288 "In case no threshold was used."^^ . _:genid2288 "PSI:PI"^^ . . . _:genid2289 . _:genid2289 . _:genid2289 . _:genid2289 . "The SearchResultId of this peptide as SearchResult in the ProteinScape database."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001495"^^ . "ProteinScape:SearchResultId"^^ . _:genid2290 . _:genid2290 . _:genid2290 . _:genid2290 "The SearchResultId of this peptide as SearchResult in the ProteinScape database."^^ . _:genid2290 "PSI:PI"^^ . _:genid2291 . _:genid2291 . _:genid2291 . _:genid2291 "value-type:xsd:positiveInteger"^^ . _:genid2291 "The allowed value-type for this CV term."^^ . . . _:genid2292 . _:genid2292 . _:genid2292 . _:genid2292 . "The SearchEventId of the SearchEvent in the ProteinScape database."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001496"^^ . "ProteinScape:SearchEventId"^^ . _:genid2293 . _:genid2293 . _:genid2293 . _:genid2293 "The SearchEventId of the SearchEvent in the ProteinScape database."^^ . _:genid2293 "PSI:PI"^^ . _:genid2294 . _:genid2294 . _:genid2294 . _:genid2294 "value-type:xsd:positiveInteger"^^ . _:genid2294 "The allowed value-type for this CV term."^^ . . . _:genid2295 . _:genid2295 . _:genid2295 . _:genid2295 . "The Profound probability score stored by ProteinScape."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001497"^^ . "ProteinScape:ProfoundProbability"^^ . _:genid2296 . _:genid2296 . _:genid2296 . _:genid2296 "The Profound probability score stored by ProteinScape."^^ . _:genid2296 "PSI:PI"^^ . _:genid2297 . _:genid2297 . _:genid2297 . _:genid2297 "value-type:xsd:double"^^ . _:genid2297 "The allowed value-type for this CV term."^^ . . . _:genid2298 . _:genid2298 . _:genid2298 . _:genid2298 . "The Profound z value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001498"^^ . "Profound:z value"^^ . _:genid2299 . _:genid2299 . _:genid2299 . _:genid2299 "The Profound z value."^^ . _:genid2299 "PSI:PI"^^ . _:genid2300 . _:genid2300 . _:genid2300 . _:genid2300 "value-type:xsd:double"^^ . _:genid2300 "The allowed value-type for this CV term."^^ . . . _:genid2301 . _:genid2301 . _:genid2301 . _:genid2301 . "The Profound cluster score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001499"^^ . "Profound:Cluster"^^ . _:genid2302 . _:genid2302 . _:genid2302 . _:genid2302 "The Profound cluster score."^^ . _:genid2302 "PSI:PI"^^ . _:genid2303 . _:genid2303 . _:genid2303 . _:genid2303 "value-type:xsd:double"^^ . _:genid2303 "The allowed value-type for this CV term."^^ . . . _:genid2304 . _:genid2304 . _:genid2304 . _:genid2304 . "The Profound cluster rank."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001500"^^ . "Profound:ClusterRank"^^ . _:genid2305 . _:genid2305 . _:genid2305 . _:genid2305 "The Profound cluster rank."^^ . _:genid2305 "PSI:PI"^^ . _:genid2306 . _:genid2306 . _:genid2306 . _:genid2306 "value-type:xsd:positiveInteger"^^ . _:genid2306 "The allowed value-type for this CV term."^^ . . . _:genid2307 . _:genid2307 . _:genid2307 . _:genid2307 . "The MSFit Mowse score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001501"^^ . "MSFit:Mowse score"^^ . _:genid2308 . _:genid2308 . _:genid2308 . _:genid2308 "The MSFit Mowse score."^^ . _:genid2308 "PSI:PI"^^ . _:genid2309 . _:genid2309 . _:genid2309 . _:genid2309 "value-type:xsd:double"^^ . _:genid2309 "The allowed value-type for this CV term."^^ . . . _:genid2310 . _:genid2310 . _:genid2310 . _:genid2310 . "The Sonar score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001502"^^ . "Sonar:Score"^^ . _:genid2311 . _:genid2311 . _:genid2311 . _:genid2311 "The Sonar score."^^ . _:genid2311 "PSI:PI"^^ . _:genid2312 . _:genid2312 . _:genid2312 . _:genid2312 "value-type:xsd:double"^^ . _:genid2312 "The allowed value-type for this CV term."^^ . . . _:genid2313 . _:genid2313 . _:genid2313 . _:genid2313 . "The ProteinSolver exp value stored by ProteinScape."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001503"^^ . "ProteinScape:PFFSolverExp"^^ . _:genid2314 . _:genid2314 . _:genid2314 . _:genid2314 "The ProteinSolver exp value stored by ProteinScape."^^ . _:genid2314 "PSI:PI"^^ . _:genid2315 . _:genid2315 . _:genid2315 . _:genid2315 "value-type:xsd:double"^^ . _:genid2315 "The allowed value-type for this CV term."^^ . . . _:genid2316 . _:genid2316 . _:genid2316 . _:genid2316 . "The ProteinSolver score stored by ProteinScape."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001504"^^ . "ProteinScape:PFFSolverScore"^^ . _:genid2317 . _:genid2317 . _:genid2317 . _:genid2317 "The ProteinSolver score stored by ProteinScape."^^ . _:genid2317 "PSI:PI"^^ . _:genid2318 . _:genid2318 . _:genid2318 . _:genid2318 "value-type:xsd:double"^^ . _:genid2318 "The allowed value-type for this CV term."^^ . . . _:genid2319 . _:genid2319 . _:genid2319 . _:genid2319 . "The intensity coverage of the identified peaks in the spectrum calculated by ProteinScape."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001505"^^ . "ProteinScape:IntensityCoverage"^^ . _:genid2320 . _:genid2320 . _:genid2320 . _:genid2320 "The intensity coverage of the identified peaks in the spectrum calculated by ProteinScape."^^ . _:genid2320 "PSI:PI"^^ . _:genid2321 . _:genid2321 . _:genid2321 . _:genid2321 "value-type:xsd:double"^^ . _:genid2321 "The allowed value-type for this CV term."^^ . . . _:genid2322 . _:genid2322 . _:genid2322 . _:genid2322 . "The SEQUEST meta score calculated by ProteinScape from the original SEQUEST scores."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001506"^^ . "ProteinScape:SequestMetaScore"^^ . _:genid2323 . _:genid2323 . _:genid2323 . _:genid2323 "The SEQUEST meta score calculated by ProteinScape from the original SEQUEST scores."^^ . _:genid2323 "PSI:PI"^^ . _:genid2324 . _:genid2324 . _:genid2324 . _:genid2324 "value-type:xsd:double"^^ . _:genid2324 "The allowed value-type for this CV term."^^ . . . _:genid2325 . _:genid2325 . _:genid2325 . _:genid2325 . "The score calculated by ProteinExtractor."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001507"^^ . "ProteinExtractor:Score"^^ . _:genid2326 . _:genid2326 . _:genid2326 . _:genid2326 "The score calculated by ProteinExtractor."^^ . _:genid2326 "PSI:PI"^^ . _:genid2327 . _:genid2327 . _:genid2327 . _:genid2327 "value-type:xsd:double"^^ . _:genid2327 "The allowed value-type for this CV term."^^ . . . "Native format defined by scanId=xsd:nonNegativeInteger."^^ . "MS"^^ . "MS:1001508"^^ . "Agilent MassHunter nativeID format"^^ . _:genid2328 . _:genid2328 . _:genid2328 . _:genid2328 "Native format defined by scanId=xsd:nonNegativeInteger."^^ . _:genid2328 "PSI:PI"^^ . . . "A data file format found in an Agilent MassHunter directory which contains raw data acquired by an Agilent mass spectrometer."^^ . "MS"^^ . "MS:1001509"^^ . "Agilent MassHunter format"^^ . _:genid2329 . _:genid2329 . _:genid2329 . _:genid2329 "A data file format found in an Agilent MassHunter directory which contains raw data acquired by an Agilent mass spectrometer."^^ . _:genid2329 "PSI:PI"^^ . . . "TSQ Vantage."^^ . "MS"^^ . "MS:1001510"^^ . "TSQ Vantage"^^ . _:genid2330 . _:genid2330 . _:genid2330 . _:genid2330 "TSQ Vantage."^^ . _:genid2330 "PSI:MS"^^ . . . "Filter types which are used to filter a sequence database."^^ . "MS"^^ . "MS:1001511"^^ . "Sequence database filter types"^^ . _:genid2331 . _:genid2331 . _:genid2331 . _:genid2331 "Filter types which are used to filter a sequence database."^^ . _:genid2331 "PSI:PI"^^ . . . "Sequence database filters which actually can contains values, e.g. to limit PI value of the sequences used to search."^^ . "MS"^^ . "MS:1001512"^^ . "Sequence database filters"^^ . _:genid2332 . _:genid2332 . _:genid2332 . _:genid2332 "Sequence database filters which actually can contains values, e.g. to limit PI value of the sequences used to search."^^ . _:genid2332 "PSI:PI"^^ . . . _:genid2333 . _:genid2333 . _:genid2333 . _:genid2333 . "DB sequence filter pattern."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001513"^^ . "DB sequence filter pattern"^^ . _:genid2334 . _:genid2334 . _:genid2334 . _:genid2334 "DB sequence filter pattern."^^ . _:genid2334 "PSI:MS"^^ . _:genid2335 . _:genid2335 . _:genid2335 . _:genid2335 "value-type:xsd:string"^^ . _:genid2335 "The allowed value-type for this CV term."^^ . . . _:genid2336 . _:genid2336 . _:genid2336 . _:genid2336 . "DB accession filter string."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001514"^^ . "DB accession filter string"^^ . _:genid2337 . _:genid2337 . _:genid2337 . _:genid2337 "DB accession filter string."^^ . _:genid2337 "PSI:MS"^^ . _:genid2338 . _:genid2338 . _:genid2338 . _:genid2338 "value-type:xsd:string"^^ . _:genid2338 "The allowed value-type for this CV term."^^ . . . "Fragmentation information, type of product: c ion without water."^^ . "MS"^^ . "MS:1001515"^^ . "frag: c ion - H2O"^^ . _:genid2339 . _:genid2339 . _:genid2339 . _:genid2339 "Fragmentation information, type of product: c ion without water."^^ . _:genid2339 "PSI:PI"^^ . . . "Fragmentation information, type of product: c ion without ammonia."^^ . "MS"^^ . "MS:1001516"^^ . "frag: c ion - NH3"^^ . _:genid2340 . _:genid2340 . _:genid2340 . _:genid2340 "Fragmentation information, type of product: c ion without ammonia."^^ . _:genid2340 "PSI:PI"^^ . . . "Fragmentation information, type of product: z ion without water."^^ . "MS"^^ . "MS:1001517"^^ . "frag: z ion - H2O"^^ . _:genid2341 . _:genid2341 . _:genid2341 . _:genid2341 "Fragmentation information, type of product: z ion without water."^^ . _:genid2341 "PSI:PI"^^ . . . "Fragmentation information, type of product: z ion without ammonia."^^ . "MS"^^ . "MS:1001518"^^ . "frag: z ion - NH3"^^ . _:genid2342 . _:genid2342 . _:genid2342 . _:genid2342 "Fragmentation information, type of product: z ion without ammonia."^^ . _:genid2342 "PSI:PI"^^ . . . "Fragmentation information, type of product: x ion without water."^^ . "MS"^^ . "MS:1001519"^^ . "frag: x ion - H2O"^^ . _:genid2343 . _:genid2343 . _:genid2343 . _:genid2343 "Fragmentation information, type of product: x ion without water."^^ . _:genid2343 "PSI:PI"^^ . . . "Fragmentation information, type of product: x ion without ammonia."^^ . "MS"^^ . "MS:1001520"^^ . "frag: x ion - NH3"^^ . _:genid2344 . _:genid2344 . _:genid2344 . _:genid2344 "Fragmentation information, type of product: x ion without ammonia."^^ . _:genid2344 "PSI:PI"^^ . . . "Fragmentation information, type of product: precursor ion without water."^^ . "MS"^^ . "MS:1001521"^^ . "frag: precursor ion - H2O"^^ . _:genid2345 . _:genid2345 . _:genid2345 . _:genid2345 "Fragmentation information, type of product: precursor ion without water."^^ . _:genid2345 "PSI:PI"^^ . . . "Fragmentation information, type of product: precursor ion without ammonia."^^ . "MS"^^ . "MS:1001522"^^ . "frag: precursor ion - NH3"^^ . _:genid2346 . _:genid2346 . _:genid2346 . _:genid2346 "Fragmentation information, type of product: precursor ion without ammonia."^^ . _:genid2346 "PSI:PI"^^ . . . "Fragmentation information, type of product: precursor ion."^^ . "MS"^^ . "MS:1001523"^^ . "frag: precursor ion"^^ . _:genid2347 . _:genid2347 . _:genid2347 . _:genid2347 "Fragmentation information, type of product: precursor ion."^^ . _:genid2347 "PSI:PI"^^ . . . _:genid2348 . _:genid2348 . _:genid2348 . _:genid2348 . _:genid2349 . _:genid2349 . _:genid2349 . _:genid2349 . "This term can describe a neutral loss m/z value that is lost from an ion."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001524"^^ . "fragment neutral loss"^^ . _:genid2350 . _:genid2350 . _:genid2350 . _:genid2350 "This term can describe a neutral loss m/z value that is lost from an ion."^^ . _:genid2350 "PSI:PI"^^ . _:genid2351 . _:genid2351 . _:genid2351 . _:genid2351 "value-type:xsd:double"^^ . _:genid2351 "The allowed value-type for this CV term."^^ . . . _:genid2352 . _:genid2352 . _:genid2352 . _:genid2352 . _:genid2353 . _:genid2353 . _:genid2353 . _:genid2353 . "This term can describe a neutral loss m/z value that is lost from an ion."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001525"^^ . "precursor neutral loss"^^ . _:genid2354 . _:genid2354 . _:genid2354 . _:genid2354 "This term can describe a neutral loss m/z value that is lost from an ion."^^ . _:genid2354 "PSI:PI"^^ . _:genid2355 . _:genid2355 . _:genid2355 . _:genid2355 "value-type:xsd:double"^^ . _:genid2355 "The allowed value-type for this CV term."^^ . . . "Native format defined by databasekey=xsd:long."^^ . "MS"^^ . "MS:1001526"^^ . "A unique identifier of a spectrum stored in a database (e.g. a PRIMARY KEY identifier)."^^ . "spectrum from database integer nativeID format"^^ . _:genid2356 . _:genid2356 . _:genid2356 . _:genid2356 "Native format defined by databasekey=xsd:long."^^ . _:genid2356 "PSI:MS"^^ . . . "Spectra from Bruker/Protagen Proteinscape database."^^ . "MS"^^ . "MS:1001527"^^ . "Proteinscape spectra"^^ . _:genid2357 . _:genid2357 . _:genid2357 . _:genid2357 "Spectra from Bruker/Protagen Proteinscape database."^^ . _:genid2357 "PSI:MS"^^ . . . . "Native format defined by query=xsd:nonNegativeInteger."^^ . "MS"^^ . "MS:1001528"^^ . "The spectrum (query) number in a Mascot results file, starting from 1."^^ . "Mascot query number"^^ . _:genid2358 . _:genid2358 . _:genid2358 . _:genid2358 "Native format defined by query=xsd:nonNegativeInteger."^^ . _:genid2358 "PSI:MS"^^ . . . "Child-terms contain information to map the results back to spectra."^^ . "MS"^^ . "MS:1001529"^^ . "spectra data details"^^ . _:genid2359 . _:genid2359 . _:genid2359 . _:genid2359 "Child-terms contain information to map the results back to spectra."^^ . _:genid2359 "PSI:MS"^^ . . . "Native format defined by mzMLid=xsd:IDREF."^^ . "MS"^^ . "MS:1001530"^^ . "A unique identifier of a spectrum stored in an mzML file."^^ . "mzML unique identifier"^^ . _:genid2360 . _:genid2360 . _:genid2360 . _:genid2360 "Native format defined by mzMLid=xsd:IDREF."^^ . _:genid2360 "PSI:MS"^^ . . . . "Native format defined by databasekey=xsd:long."^^ . "MS"^^ . "MS:1001531"^^ . "A unique identifier of a spectrum stored in a ProteinScape database."^^ . "spectrum from ProteinScape database nativeID format"^^ . _:genid2361 . _:genid2361 . _:genid2361 . _:genid2361 "Native format defined by databasekey=xsd:long."^^ . _:genid2361 "PSI:MS"^^ . . . . "Native format defined by databasekey=xsd:string."^^ . "MS"^^ . "MS:1001532"^^ . "A unique identifier of a spectrum stored in a database (e.g. a PRIMARY KEY identifier)."^^ . "spectrum from database string nativeID format"^^ . _:genid2362 . _:genid2362 . _:genid2362 . _:genid2362 "Native format defined by databasekey=xsd:string."^^ . _:genid2362 "PSI:MS"^^ . . . "Bruker Daltonics' esquire series."^^ . "MS"^^ . "MS:1001533"^^ . "Bruker Daltonics esquire series"^^ . _:genid2363 . _:genid2363 . _:genid2363 . _:genid2363 "Bruker Daltonics' esquire series."^^ . _:genid2363 "PSI:MS"^^ . . . "Bruker Daltonics' flex series."^^ . "MS"^^ . "MS:1001534"^^ . "Bruker Daltonics flex series"^^ . _:genid2364 . _:genid2364 . _:genid2364 . _:genid2364 "Bruker Daltonics' flex series."^^ . _:genid2364 "PSI:MS"^^ . . . "Bruker Daltonics' BioTOF series."^^ . "MS"^^ . "MS:1001535"^^ . "Bruker Daltonics BioTOF series"^^ . _:genid2365 . _:genid2365 . _:genid2365 . _:genid2365 "Bruker Daltonics' BioTOF series."^^ . _:genid2365 "PSI:MS"^^ . . . "Bruker Daltonics' micrOTOF series."^^ . "MS"^^ . "MS:1001536"^^ . "Bruker Daltonics micrOTOF series"^^ . _:genid2366 . _:genid2366 . _:genid2366 . _:genid2366 "Bruker Daltonics' micrOTOF series."^^ . _:genid2366 "PSI:MS"^^ . . . "Bruker Daltonics' BioTOF: ESI TOF."^^ . "MS"^^ . "MS:1001537"^^ . "BioTOF"^^ . _:genid2367 . _:genid2367 . _:genid2367 . _:genid2367 "Bruker Daltonics' BioTOF: ESI TOF."^^ . _:genid2367 "PSI:MS"^^ . . . "Bruker Daltonics' BioTOF III: ESI TOF."^^ . "MS"^^ . "MS:1001538"^^ . "BioTOF III"^^ . _:genid2368 . _:genid2368 . _:genid2368 . _:genid2368 "Bruker Daltonics' BioTOF III: ESI TOF."^^ . _:genid2368 "PSI:MS"^^ . . . "Bruker Daltonics' UltroTOF-Q: ESI Q-TOF (MALDI optional)."^^ . "MS"^^ . "MS:1001539"^^ . "UltroTOF-Q"^^ . _:genid2369 . _:genid2369 . _:genid2369 . _:genid2369 "Bruker Daltonics' UltroTOF-Q: ESI Q-TOF (MALDI optional)."^^ . _:genid2369 "PSI:MS"^^ . . . "Bruker Daltonics' micrOTOF II: ESI TOF, Nanospray, APCI, APPI."^^ . "MS"^^ . "MS:1001540"^^ . "micrOTOF II"^^ . _:genid2370 . _:genid2370 . _:genid2370 . _:genid2370 "Bruker Daltonics' micrOTOF II: ESI TOF, Nanospray, APCI, APPI."^^ . _:genid2370 "PSI:MS"^^ . . . "Bruker Daltonics' maXis: ESI Q-TOF, Nanospray, APCI, APPI."^^ . "MS"^^ . "MS:1001541"^^ . "maXis"^^ . _:genid2371 . _:genid2371 . _:genid2371 . _:genid2371 "Bruker Daltonics' maXis: ESI Q-TOF, Nanospray, APCI, APPI."^^ . _:genid2371 "PSI:MS"^^ . . . "Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR."^^ . "MS"^^ . "MS:1001542"^^ . "amaZon ETD"^^ . _:genid2372 . _:genid2372 . _:genid2372 . _:genid2372 "Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR."^^ . _:genid2372 "PSI:MS"^^ . . . "Bruker Daltonics' microflex LRF: MALDI TOF."^^ . "MS"^^ . "MS:1001543"^^ . "microflex LRF"^^ . _:genid2373 . _:genid2373 . _:genid2373 . _:genid2373 "Bruker Daltonics' microflex LRF: MALDI TOF."^^ . _:genid2373 "PSI:MS"^^ . . . "Bruker Daltonics' ultrafleXtreme: MALDI TOF."^^ . "MS"^^ . "MS:1001544"^^ . "ultrafleXtreme"^^ . _:genid2374 . _:genid2374 . _:genid2374 . _:genid2374 "Bruker Daltonics' ultrafleXtreme: MALDI TOF."^^ . _:genid2374 "PSI:MS"^^ . . . "Bruker Daltonics' amaZon series."^^ . "MS"^^ . "MS:1001545"^^ . "Bruker Daltonics amaZon series"^^ . _:genid2375 . _:genid2375 . _:genid2375 . _:genid2375 "Bruker Daltonics' amaZon series."^^ . _:genid2375 "PSI:MS"^^ . . . "Bruker Daltonics' amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR."^^ . "MS"^^ . "MS:1001546"^^ . "amaZon X"^^ . _:genid2376 . _:genid2376 . _:genid2376 . _:genid2376 "Bruker Daltonics' amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR."^^ . _:genid2376 "PSI:MS"^^ . . . "Bruker Daltonics' maXis series."^^ . "MS"^^ . "MS:1001547"^^ . "Bruker Daltonics maXis series"^^ . _:genid2377 . _:genid2377 . _:genid2377 . _:genid2377 "Bruker Daltonics' maXis series."^^ . _:genid2377 "PSI:MS"^^ . . . "Bruker Daltonics' solarix: ESI quadrupole ion trap, APCI, APPI, ETD, PTR."^^ . "MS"^^ . "MS:1001548"^^ . "Bruker Daltonics solarix series"^^ . _:genid2378 . _:genid2378 . _:genid2378 . _:genid2378 "Bruker Daltonics' solarix: ESI quadrupole ion trap, APCI, APPI, ETD, PTR."^^ . _:genid2378 "PSI:MS"^^ . . . "Bruker Daltonics' solariX: ESI, MALDI, Qh-FT_ICR."^^ . "MS"^^ . "MS:1001549"^^ . "solariX"^^ . _:genid2379 . _:genid2379 . _:genid2379 . _:genid2379 "Bruker Daltonics' solariX: ESI, MALDI, Qh-FT_ICR."^^ . _:genid2379 "PSI:MS"^^ . . . "Bruker Daltonics' microflex II: MALDI TOF."^^ . "MS"^^ . "MS:1001550"^^ . "microflex II"^^ . _:genid2380 . _:genid2380 . _:genid2380 . _:genid2380 "Bruker Daltonics' microflex II: MALDI TOF."^^ . _:genid2380 "PSI:MS"^^ . . . "Bruker Daltonics' autoflex II TOF/TOF: MALDI TOF."^^ . "MS"^^ . "MS:1001553"^^ . "autoflex II TOF/TOF"^^ . _:genid2381 . _:genid2381 . _:genid2381 . _:genid2381 "Bruker Daltonics' autoflex II TOF/TOF: MALDI TOF."^^ . _:genid2381 "PSI:MS"^^ . . . "Bruker Daltonics' autoflex III TOF/TOF smartbeam: MALDI TOF."^^ . "MS"^^ . "MS:1001554"^^ . "autoflex III TOF/TOF smartbeam"^^ . _:genid2382 . _:genid2382 . _:genid2382 . _:genid2382 "Bruker Daltonics' autoflex III TOF/TOF smartbeam: MALDI TOF."^^ . _:genid2382 "PSI:MS"^^ . . . "Bruker Daltonics' autoflex: MALDI TOF."^^ . "MS"^^ . "MS:1001555"^^ . "autoflex"^^ . _:genid2383 . _:genid2383 . _:genid2383 . _:genid2383 "Bruker Daltonics' autoflex: MALDI TOF."^^ . _:genid2383 "PSI:MS"^^ . . . "Bruker Daltonics' apex series."^^ . "MS"^^ . "MS:1001556"^^ . "Bruker Daltonics apex series"^^ . _:genid2384 . _:genid2384 . _:genid2384 . _:genid2384 "Bruker Daltonics' apex series."^^ . _:genid2384 "PSI:MS"^^ . . . "Shimadzu Corporation software."^^ . "MS"^^ . "MS:1001557"^^ . "Shimadzu Corporation software"^^ . _:genid2385 . _:genid2385 . _:genid2385 . _:genid2385 "Shimadzu Corporation software."^^ . _:genid2385 "PSI:MS"^^ . . . . . . "Shimadzu Biotech software for data acquisition, processing, and analysis."^^ . "MS"^^ . "MS:1001558"^^ . "MALDI Solutions"^^ . _:genid2386 . _:genid2386 . _:genid2386 . _:genid2386 "Shimadzu Biotech software for data acquisition, processing, and analysis."^^ . _:genid2386 "PSI:MS"^^ . . . "Native format defined by file=xsd:IDREF."^^ . "MS"^^ . "MS:1001559"^^ . "SCIEX TOF/TOF T2D nativeID format"^^ . _:genid2387 . _:genid2387 . _:genid2387 . _:genid2387 "Native format defined by file=xsd:IDREF."^^ . _:genid2387 "PSI:MS"^^ . . . "Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export format."^^ . "MS"^^ . "MS:1001560"^^ . "SCIEX TOF/TOF T2D format"^^ . _:genid2388 . _:genid2388 . _:genid2388 . _:genid2388 "Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export format."^^ . _:genid2388 "PSI:MS"^^ . . . "Scaffold analysis software."^^ . "MS"^^ . "MS:1001561"^^ . "Scaffold"^^ . _:genid2389 . _:genid2389 . _:genid2389 . _:genid2389 "Scaffold analysis software."^^ . _:genid2389 "http://www.proteomesoftware.com"^^ . . . "Scaffold native ID format."^^ . "MS"^^ . "MS:1001562"^^ . "Scaffold nativeID format"^^ . _:genid2390 . _:genid2390 . _:genid2390 . _:genid2390 "Scaffold native ID format."^^ . _:genid2390 "PSI:MS"^^ . . . "Source file for this mzIdentML was in SEQUEST SQT format."^^ . "MS"^^ . "MS:1001563"^^ . "SEQUEST SQT format"^^ . _:genid2391 . _:genid2391 . _:genid2391 . _:genid2391 "Source file for this mzIdentML was in SEQUEST SQT format."^^ . _:genid2391 "PSI:PI"^^ . . . "Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format."^^ . "MS"^^ . "MS:1001564"^^ . "Discoverer MSF format"^^ . _:genid2392 . _:genid2392 . _:genid2392 . _:genid2392 "Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format."^^ . _:genid2392 "PSI:PI"^^ . . . "Source file for this mzIdentML was in Waters IdentityE XML format."^^ . "MS"^^ . "MS:1001565"^^ . "IdentityE XML format"^^ . _:genid2393 . _:genid2393 . _:genid2393 . _:genid2393 "Source file for this mzIdentML was in Waters IdentityE XML format."^^ . _:genid2393 "PSI:PI"^^ . . . "Source file for this mzIdentML was in Waters ProteinLynx XML format."^^ . "MS"^^ . "MS:1001566"^^ . "ProteinLynx XML format"^^ . _:genid2394 . _:genid2394 . _:genid2394 . _:genid2394 "Source file for this mzIdentML was in Waters ProteinLynx XML format."^^ . _:genid2394 "PSI:PI"^^ . . . "Source file for this mzIdentML was in Agilent SpectrumMill directory format."^^ . "MS"^^ . "MS:1001567"^^ . "SpectrumMill directories"^^ . _:genid2395 . _:genid2395 . _:genid2395 . _:genid2395 "Source file for this mzIdentML was in Agilent SpectrumMill directory format."^^ . _:genid2395 "PSI:PI"^^ . . . _:genid2396 . _:genid2396 . _:genid2396 . _:genid2396 . "Scaffold peptide probability score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001568"^^ . "Scaffold:Peptide Probability"^^ . _:genid2397 . _:genid2397 . _:genid2397 . _:genid2397 "Scaffold peptide probability score."^^ . _:genid2397 "PSI:PI"^^ . _:genid2398 . _:genid2398 . _:genid2398 . _:genid2398 "value-type:xsd:double"^^ . _:genid2398 "The allowed value-type for this CV term."^^ . . . _:genid2399 . _:genid2399 . _:genid2399 . _:genid2399 . "Waters IdentityE peptide score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001569"^^ . "IdentityE Score"^^ . _:genid2400 . _:genid2400 . _:genid2400 . _:genid2400 "Waters IdentityE peptide score."^^ . _:genid2400 "PSI:PI"^^ . _:genid2401 . _:genid2401 . _:genid2401 . _:genid2401 "value-type:xsd:double"^^ . _:genid2401 "The allowed value-type for this CV term."^^ . . . _:genid2402 . _:genid2402 . _:genid2402 . _:genid2402 . "ProteinLynx log likelihood score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001570"^^ . "ProteinLynx:Log Likelihood"^^ . _:genid2403 . _:genid2403 . _:genid2403 . _:genid2403 "ProteinLynx log likelihood score."^^ . _:genid2403 "PSI:PI"^^ . _:genid2404 . _:genid2404 . _:genid2404 . _:genid2404 "value-type:xsd:double"^^ . _:genid2404 "The allowed value-type for this CV term."^^ . . . _:genid2405 . _:genid2405 . _:genid2405 . _:genid2405 . "Waters ProteinLynx Ladder score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001571"^^ . "ProteinLynx:Ladder Score"^^ . _:genid2406 . _:genid2406 . _:genid2406 . _:genid2406 "Waters ProteinLynx Ladder score."^^ . _:genid2406 "PSI:PI"^^ . _:genid2407 . _:genid2407 . _:genid2407 . _:genid2407 "value-type:xsd:double"^^ . _:genid2407 "The allowed value-type for this CV term."^^ . . . _:genid2408 . _:genid2408 . _:genid2408 . _:genid2408 . "Spectrum mill peptide score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001572"^^ . "SpectrumMill:Score"^^ . _:genid2409 . _:genid2409 . _:genid2409 . _:genid2409 "Spectrum mill peptide score."^^ . _:genid2409 "PSI:PI"^^ . _:genid2410 . _:genid2410 . _:genid2410 . _:genid2410 "value-type:xsd:double"^^ . _:genid2410 "The allowed value-type for this CV term."^^ . . . _:genid2411 . _:genid2411 . _:genid2411 . _:genid2411 . "SpectrumMill SPI score (%)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001573"^^ . "SpectrumMill:SPI"^^ . _:genid2412 . _:genid2412 . _:genid2412 . _:genid2412 "SpectrumMill SPI score (%)."^^ . _:genid2412 "PSI:PI"^^ . _:genid2413 . _:genid2413 . _:genid2413 . _:genid2413 "value-type:xsd:double"^^ . _:genid2413 "The allowed value-type for this CV term."^^ . . . "Flag indicating to report only the spectra assigned to identified proteins."^^ . "MS"^^ . "MS:1001574"^^ . "report only spectra assigned to identified proteins"^^ . _:genid2414 . _:genid2414 . _:genid2414 . _:genid2414 "Flag indicating to report only the spectra assigned to identified proteins."^^ . _:genid2414 "PSI:PI"^^ . . . _:genid2415 . _:genid2415 . _:genid2415 . _:genid2415 . "Minimum number of peptides a protein must have to be accepted."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1001575"^^ . "Scaffold: Minimum Peptide Count"^^ . _:genid2416 . _:genid2416 . _:genid2416 . _:genid2416 "Minimum number of peptides a protein must have to be accepted."^^ . _:genid2416 "PSI:PI"^^ . _:genid2417 . _:genid2417 . _:genid2417 . _:genid2417 "value-type:xsd:positiveInteger"^^ . _:genid2417 "The allowed value-type for this CV term."^^ . . . _:genid2418 . _:genid2418 . _:genid2418 . _:genid2418 . "Minimum protein probability a protein must have to be accepted."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001576"^^ . "Scaffold: Minimum Protein Probability"^^ . _:genid2419 . _:genid2419 . _:genid2419 . _:genid2419 "Minimum protein probability a protein must have to be accepted."^^ . _:genid2419 "PSI:PI"^^ . _:genid2420 . _:genid2420 . _:genid2420 . _:genid2420 "value-type:xsd:double"^^ . _:genid2420 "The allowed value-type for this CV term."^^ . . . _:genid2421 . _:genid2421 . _:genid2421 . _:genid2421 . "Minimum probability a peptide must have to be accepted for protein scoring."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001577"^^ . "Scaffold: Minimum Peptide Probability"^^ . _:genid2422 . _:genid2422 . _:genid2422 . _:genid2422 "Minimum probability a peptide must have to be accepted for protein scoring."^^ . _:genid2422 "PSI:PI"^^ . _:genid2423 . _:genid2423 . _:genid2423 . _:genid2423 "value-type:xsd:double"^^ . _:genid2423 "The allowed value-type for this CV term."^^ . . . _:genid2424 . _:genid2424 . _:genid2424 . _:genid2424 . "Minimum number of enzymatic termini a peptide must have to be accepted."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001578"^^ . "minimum number of enzymatic termini"^^ . _:genid2425 . _:genid2425 . _:genid2425 . _:genid2425 "Minimum number of enzymatic termini a peptide must have to be accepted."^^ . _:genid2425 "PSI:PI"^^ . _:genid2426 . _:genid2426 . _:genid2426 . _:genid2426 "value-type:xsd:nonNegativeInteger"^^ . _:genid2426 "The allowed value-type for this CV term."^^ . . . _:genid2427 . _:genid2427 . _:genid2427 . _:genid2427 . "Scaffold protein probability score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001579"^^ . "Scaffold:Protein Probability"^^ . _:genid2428 . _:genid2428 . _:genid2428 . _:genid2428 "Scaffold protein probability score."^^ . _:genid2428 "PSI:PI"^^ . _:genid2429 . _:genid2429 . _:genid2429 . _:genid2429 "value-type:xsd:double"^^ . _:genid2429 "The allowed value-type for this CV term."^^ . . . _:genid2430 . _:genid2430 . _:genid2430 . _:genid2430 . "Discriminant score from Agilent SpectrumMill software."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001580"^^ . "SpectrumMill:Discriminant Score"^^ . _:genid2431 . _:genid2431 . _:genid2431 . _:genid2431 "Discriminant score from Agilent SpectrumMill software."^^ . _:genid2431 "PSI:PI"^^ . _:genid2432 . _:genid2432 . _:genid2432 . _:genid2432 "value-type:xsd:double"^^ . _:genid2432 "The allowed value-type for this CV term."^^ . . . _:genid2433 . _:genid2433 . _:genid2433 . _:genid2433 . _:genid2434 . _:genid2434 . _:genid2434 . _:genid2434 . "The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion."^^ . "value-type:xsd:double"^^ . "FAIMS CV"^^ . "MS"^^ . "MS:1001581"^^ . "FAIMS compensation voltage"^^ . _:genid2435 . _:genid2435 . _:genid2435 . _:genid2435 "The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion."^^ . _:genid2435 "PSI:MS"^^ . _:genid2436 . _:genid2436 . _:genid2436 . _:genid2436 "value-type:xsd:double"^^ . _:genid2436 "The allowed value-type for this CV term."^^ . . . . "Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data."^^ . "MS"^^ . "MS:1001582"^^ . "XCMS"^^ . _:genid2437 . _:genid2437 . _:genid2437 . _:genid2437 "Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data."^^ . _:genid2437 "PSI:MS"^^ . . . . "MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric data sets. It is specifically aimed at high resolution MS data."^^ . "MS"^^ . "MS:1001583"^^ . "MaxQuant"^^ . _:genid2438 . _:genid2438 . _:genid2438 . _:genid2438 "MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric data sets. It is specifically aimed at high resolution MS data."^^ . _:genid2438 "PSI:MS"^^ . . . "Search that includes data from Peptide Mass Fingerprint (PMF) and MS2 (aka Peptide Fragment Fingerprint - PFF)."^^ . "MS"^^ . "MS:1001584"^^ . "combined pmf + ms-ms search"^^ . _:genid2439 . _:genid2439 . _:genid2439 . _:genid2439 "Search that includes data from Peptide Mass Fingerprint (PMF) and MS2 (aka Peptide Fragment Fingerprint - PFF)."^^ . _:genid2439 "PSI:MS"^^ . . . "Tabb Lab software for directly comparing peptides in a database to tandem mass spectra."^^ . "MS"^^ . "MS:1001585"^^ . "MyriMatch"^^ . _:genid2440 . _:genid2440 . _:genid2440 . _:genid2440 "Tabb Lab software for directly comparing peptides in a database to tandem mass spectra."^^ . _:genid2440 "PSI:MS"^^ . . . "Tabb Lab software for generating sequence tags from tandem mass spectra."^^ . "MS"^^ . "MS:1001586"^^ . "DirecTag"^^ . _:genid2441 . _:genid2441 . _:genid2441 . _:genid2441 "Tabb Lab software for generating sequence tags from tandem mass spectra."^^ . _:genid2441 "PSI:MS"^^ . . . "Tabb Lab software for reconciling sequence tags to a protein database."^^ . "MS"^^ . "MS:1001587"^^ . "TagRecon"^^ . _:genid2442 . _:genid2442 . _:genid2442 . _:genid2442 "Tabb Lab software for reconciling sequence tags to a protein database."^^ . _:genid2442 "PSI:MS"^^ . . . "Tabb Lab software for spectral library searches on tandem mass spectra."^^ . "MS"^^ . "MS:1001588"^^ . "Pepitome"^^ . _:genid2443 . _:genid2443 . _:genid2443 . _:genid2443 "Tabb Lab software for spectral library searches on tandem mass spectra."^^ . _:genid2443 "PSI:MS"^^ . . . "Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance."^^ . "Pepitome:MVH"^^ . "TagRecon:MVH"^^ . "MS"^^ . "MS:1001589"^^ . "MyriMatch:MVH"^^ . _:genid2444 . _:genid2444 . _:genid2444 . _:genid2444 "Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance."^^ . _:genid2444 "PSI:MS"^^ . . . "The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution."^^ . "Pepitome:mzFidelity"^^ . "TagRecon:mzFidelity"^^ . "MS"^^ . "MS:1001590"^^ . "MyriMatch:mzFidelity"^^ . _:genid2445 . _:genid2445 . _:genid2445 . _:genid2445 "The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution."^^ . _:genid2445 "PSI:MS"^^ . . . _:genid2446 . _:genid2446 . _:genid2446 . _:genid2446 . "A representative protein selected from a set of sequence same-set or spectrum same-set proteins."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001591"^^ . "anchor protein"^^ . _:genid2447 . _:genid2447 . _:genid2447 . _:genid2447 "A representative protein selected from a set of sequence same-set or spectrum same-set proteins."^^ . _:genid2447 "PSI:MS"^^ . _:genid2448 . _:genid2448 . _:genid2448 . _:genid2448 "value-type:xsd:string"^^ . _:genid2448 "The allowed value-type for this CV term."^^ . . . _:genid2449 . _:genid2449 . _:genid2449 . _:genid2449 . "A protein with significant homology to another protein, but some distinguishing peptide matches."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001592"^^ . "family member protein"^^ . _:genid2450 . _:genid2450 . _:genid2450 . _:genid2450 "A protein with significant homology to another protein, but some distinguishing peptide matches."^^ . _:genid2450 "PSI:MS"^^ . _:genid2451 . _:genid2451 . _:genid2451 . _:genid2451 "value-type:xsd:string"^^ . _:genid2451 "The allowed value-type for this CV term."^^ . . . "TO ENDETAIL: a really generic relationship OR ortholog protein."^^ . "MS"^^ . "MS:1001593"^^ . "group member with undefined relationship OR ortholog protein"^^ . _:genid2452 . _:genid2452 . _:genid2452 . _:genid2452 "TO ENDETAIL: a really generic relationship OR ortholog protein."^^ . _:genid2452 "PSI:MS"^^ . . . _:genid2453 . _:genid2453 . _:genid2453 . _:genid2453 . "A protein which is indistinguishable or equivalent to another protein, having matches to an identical set of peptide sequences."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001594"^^ . "sequence same-set protein"^^ . _:genid2454 . _:genid2454 . _:genid2454 . _:genid2454 "A protein which is indistinguishable or equivalent to another protein, having matches to an identical set of peptide sequences."^^ . _:genid2454 "PSI:MS"^^ . _:genid2455 . _:genid2455 . _:genid2455 . _:genid2455 "value-type:xsd:string"^^ . _:genid2455 "The allowed value-type for this CV term."^^ . . . _:genid2456 . _:genid2456 . _:genid2456 . _:genid2456 . "A protein which is indistinguishable or equivalent to another protein, having matches to a set of peptide sequences that cannot be distinguished using the evidence in the mass spectra."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001595"^^ . "spectrum same-set protein"^^ . _:genid2457 . _:genid2457 . _:genid2457 . _:genid2457 "A protein which is indistinguishable or equivalent to another protein, having matches to a set of peptide sequences that cannot be distinguished using the evidence in the mass spectra."^^ . _:genid2457 "PSI:MS"^^ . _:genid2458 . _:genid2458 . _:genid2458 . _:genid2458 "value-type:xsd:string"^^ . _:genid2458 "The allowed value-type for this CV term."^^ . . . _:genid2459 . _:genid2459 . _:genid2459 . _:genid2459 . "A protein with a sub-set of the peptide sequence matches for another protein, and no distinguishing peptide matches."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001596"^^ . "sequence sub-set protein"^^ . _:genid2460 . _:genid2460 . _:genid2460 . _:genid2460 "A protein with a sub-set of the peptide sequence matches for another protein, and no distinguishing peptide matches."^^ . _:genid2460 "PSI:MS"^^ . _:genid2461 . _:genid2461 . _:genid2461 . _:genid2461 "value-type:xsd:string"^^ . _:genid2461 "The allowed value-type for this CV term."^^ . . . _:genid2462 . _:genid2462 . _:genid2462 . _:genid2462 . "A protein with a sub-set of the matched spectra for another protein, where the matches cannot be distinguished using the evidence in the mass spectra, and no distinguishing peptide matches."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001597"^^ . "spectrum sub-set protein"^^ . _:genid2463 . _:genid2463 . _:genid2463 . _:genid2463 "A protein with a sub-set of the matched spectra for another protein, where the matches cannot be distinguished using the evidence in the mass spectra, and no distinguishing peptide matches."^^ . _:genid2463 "PSI:MS"^^ . _:genid2464 . _:genid2464 . _:genid2464 . _:genid2464 "value-type:xsd:string"^^ . _:genid2464 "The allowed value-type for this CV term."^^ . . . _:genid2465 . _:genid2465 . _:genid2465 . _:genid2465 . "A sequence same-set or sequence sub-set protein where the matches are distributed across two or more proteins."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001598"^^ . "sequence subsumable protein"^^ . _:genid2466 . _:genid2466 . _:genid2466 . _:genid2466 "A sequence same-set or sequence sub-set protein where the matches are distributed across two or more proteins."^^ . _:genid2466 "PSI:MS"^^ . _:genid2467 . _:genid2467 . _:genid2467 . _:genid2467 "value-type:xsd:string"^^ . _:genid2467 "The allowed value-type for this CV term."^^ . . . _:genid2468 . _:genid2468 . _:genid2468 . _:genid2468 . "A spectrum same-set or spectrum sub-set protein where the matches are distributed across two or more proteins."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001599"^^ . "spectrum subsumable protein"^^ . _:genid2469 . _:genid2469 . _:genid2469 . _:genid2469 "A spectrum same-set or spectrum sub-set protein where the matches are distributed across two or more proteins."^^ . _:genid2469 "PSI:MS"^^ . _:genid2470 . _:genid2470 . _:genid2470 . _:genid2470 "value-type:xsd:string"^^ . _:genid2470 "The allowed value-type for this CV term."^^ . . . _:genid2471 . _:genid2471 . _:genid2471 . _:genid2471 . "Confidence category of inferred protein (conclusive, non conclusive, ambiguous group or indistinguishable)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001600"^^ . "protein inference confidence category"^^ . _:genid2472 . _:genid2472 . _:genid2472 . _:genid2472 "Confidence category of inferred protein (conclusive, non conclusive, ambiguous group or indistinguishable)."^^ . _:genid2472 "PSI:MS"^^ . _:genid2473 . _:genid2473 . _:genid2473 . _:genid2473 "value-type:xsd:string"^^ . _:genid2473 "The allowed value-type for this CV term."^^ . . . _:genid2474 . _:genid2474 . _:genid2474 . _:genid2474 . "OBSOLETE Name and location of the .raw file or files."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001601"^^ . "This term was made obsolete because it's recommended to use one of the 'mass spectrometer file format' terms (MS:1000560) instead."^^ . "ProteomeDiscoverer:Spectrum Files:Raw File names"^^ . "true"^^ . _:genid2475 . _:genid2475 . _:genid2475 . _:genid2475 "OBSOLETE Name and location of the .raw file or files."^^ . _:genid2475 "PSI:MS"^^ . _:genid2476 . _:genid2476 . _:genid2476 . _:genid2476 "value-type:xsd:string"^^ . _:genid2476 "The allowed value-type for this CV term."^^ . . . _:genid2477 . _:genid2477 . _:genid2477 . _:genid2477 . "OBSOLETE Path and name of the .srf (SEQUEST Result Format) file."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001602"^^ . "This term was made obsolete. Use attribute in mzIdentML / mzQuantML instead."^^ . "ProteomeDiscoverer:SRF File Selector:SRF File Path"^^ . "true"^^ . _:genid2478 . _:genid2478 . _:genid2478 . _:genid2478 "OBSOLETE Path and name of the .srf (SEQUEST Result Format) file."^^ . _:genid2478 "PSI:MS"^^ . _:genid2479 . _:genid2479 . _:genid2479 . _:genid2479 "value-type:xsd:string"^^ . _:genid2479 "The allowed value-type for this CV term."^^ . . . _:genid2480 . _:genid2480 . _:genid2480 . _:genid2480 . "OBSOLETE Ionization source (electro-, nano-, thermospray, electron impact, APCI, MALDI, FAB etc)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001603"^^ . "This term was made obsolete because it's recommended to use one of the 'inlet type' (MS:1000007) or 'ionization type' (MS:1000008) terms instead."^^ . "ProteomeDiscoverer:Spectrum Selector:Ionization Source"^^ . "true"^^ . _:genid2481 . _:genid2481 . _:genid2481 . _:genid2481 "OBSOLETE Ionization source (electro-, nano-, thermospray, electron impact, APCI, MALDI, FAB etc)."^^ . _:genid2481 "PSI:MS"^^ . _:genid2482 . _:genid2482 . _:genid2482 . _:genid2482 "value-type:xsd:string"^^ . _:genid2482 "The allowed value-type for this CV term."^^ . . . _:genid2483 . _:genid2483 . _:genid2483 . _:genid2483 . "OBSOLETE Fragmentation method used (CID, MPD, ECD, PQD, ETD, HCD, Any)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001604"^^ . "This term was made obsolete because it's recommended to use one of the 'ionization type' terms (MS:1000008) instead."^^ . "ProteomeDiscoverer:Activation Type"^^ . "true"^^ . _:genid2484 . _:genid2484 . _:genid2484 . _:genid2484 "OBSOLETE Fragmentation method used (CID, MPD, ECD, PQD, ETD, HCD, Any)."^^ . _:genid2484 "PSI:MS"^^ . _:genid2485 . _:genid2485 . _:genid2485 . _:genid2485 "value-type:xsd:string"^^ . _:genid2485 "The allowed value-type for this CV term."^^ . . . _:genid2486 . _:genid2486 . _:genid2486 . _:genid2486 . "Lower retention-time limit."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001605"^^ . "ProteomeDiscoverer:Spectrum Selector:Lower RT Limit"^^ . _:genid2487 . _:genid2487 . _:genid2487 . _:genid2487 "Lower retention-time limit."^^ . _:genid2487 "PSI:MS"^^ . _:genid2488 . _:genid2488 . _:genid2488 . _:genid2488 "value-type:xsd:float"^^ . _:genid2488 "The allowed value-type for this CV term."^^ . . . _:genid2489 . _:genid2489 . _:genid2489 . _:genid2489 . "OBSOLETE Type of mass spectrometer used (ITMS, FTMS, TOFMS, SQMS, TQMS, SectorMS)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001606"^^ . "This term was made obsolete because it's recommended to use mass analyzer type (MS:1000443) instead."^^ . "ProteomeDiscoverer:Mass Analyzer"^^ . "true"^^ . _:genid2490 . _:genid2490 . _:genid2490 . _:genid2490 "OBSOLETE Type of mass spectrometer used (ITMS, FTMS, TOFMS, SQMS, TQMS, SectorMS)."^^ . _:genid2490 "PSI:MS"^^ . _:genid2491 . _:genid2491 . _:genid2491 . _:genid2491 "value-type:xsd:string"^^ . _:genid2491 "The allowed value-type for this CV term."^^ . . . _:genid2492 . _:genid2492 . _:genid2492 . _:genid2492 . "Maximum mass limit of a singly charged precursor ion."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001607"^^ . "ProteomeDiscoverer:Max Precursor Mass"^^ . _:genid2493 . _:genid2493 . _:genid2493 . _:genid2493 "Maximum mass limit of a singly charged precursor ion."^^ . _:genid2493 "PSI:MS"^^ . _:genid2494 . _:genid2494 . _:genid2494 . _:genid2494 "value-type:xsd:float"^^ . _:genid2494 "The allowed value-type for this CV term."^^ . . . _:genid2495 . _:genid2495 . _:genid2495 . _:genid2495 . "Minimum mass limit of a singly charged precursor ion."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001608"^^ . "ProteomeDiscoverer:Min Precursor Mass"^^ . _:genid2496 . _:genid2496 . _:genid2496 . _:genid2496 "Minimum mass limit of a singly charged precursor ion."^^ . _:genid2496 "PSI:MS"^^ . _:genid2497 . _:genid2497 . _:genid2497 . _:genid2497 "value-type:xsd:float"^^ . _:genid2497 "The allowed value-type for this CV term."^^ . . . _:genid2498 . _:genid2498 . _:genid2498 . _:genid2498 . "Minimum number of peaks in a tandem mass spectrum that is allowed to pass the filter and to be subjected to further processing in the workflow."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001609"^^ . "ProteomeDiscoverer:Spectrum Selector:Minimum Peak Count"^^ . _:genid2499 . _:genid2499 . _:genid2499 . _:genid2499 "Minimum number of peaks in a tandem mass spectrum that is allowed to pass the filter and to be subjected to further processing in the workflow."^^ . _:genid2499 "PSI:MS"^^ . _:genid2500 . _:genid2500 . _:genid2500 . _:genid2500 "value-type:xsd:int"^^ . _:genid2500 "The allowed value-type for this CV term."^^ . . . _:genid2501 . _:genid2501 . _:genid2501 . _:genid2501 . "OBSOLETE Level of the mass spectrum (MS2 ... MS10)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001610"^^ . "This term was made obsolete because it's recommended to use MS1 spectrum (MS:1000579) or MSn spectrum (MS:1000580) instead."^^ . "ProteomeDiscoverer:MS Order"^^ . "true"^^ . _:genid2502 . _:genid2502 . _:genid2502 . _:genid2502 "OBSOLETE Level of the mass spectrum (MS2 ... MS10)."^^ . _:genid2502 "PSI:MS"^^ . _:genid2503 . _:genid2503 . _:genid2503 . _:genid2503 "value-type:xsd:string"^^ . _:genid2503 "The allowed value-type for this CV term."^^ . . . _:genid2504 . _:genid2504 . _:genid2504 . _:genid2504 . "OBSOLETE Polarity mode (positive or negative)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001611"^^ . "This term was made obsolete because it's recommended to use scan polarity (MS:1000465) instead."^^ . "ProteomeDiscoverer:Polarity Mode"^^ . "true"^^ . _:genid2505 . _:genid2505 . _:genid2505 . _:genid2505 "OBSOLETE Polarity mode (positive or negative)."^^ . _:genid2505 "PSI:MS"^^ . _:genid2506 . _:genid2506 . _:genid2506 . _:genid2506 "value-type:xsd:string"^^ . _:genid2506 "The allowed value-type for this CV term."^^ . . . _:genid2507 . _:genid2507 . _:genid2507 . _:genid2507 . "Determines which precursor mass to use for a given MSn scan. This option applies only to higher-order MSn scans (n >= 3)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001612"^^ . "ProteomeDiscoverer:Spectrum Selector:Precursor Selection"^^ . _:genid2508 . _:genid2508 . _:genid2508 . _:genid2508 "Determines which precursor mass to use for a given MSn scan. This option applies only to higher-order MSn scans (n >= 3)."^^ . _:genid2508 "PSI:MS"^^ . _:genid2509 . _:genid2509 . _:genid2509 . _:genid2509 "value-type:xsd:string"^^ . _:genid2509 "The allowed value-type for this CV term."^^ . . . _:genid2510 . _:genid2510 . _:genid2510 . _:genid2510 . "Signal-to-Noise ratio below which peaks are removed."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001613"^^ . "ProteomeDiscoverer:SN Threshold"^^ . _:genid2511 . _:genid2511 . _:genid2511 . _:genid2511 "Signal-to-Noise ratio below which peaks are removed."^^ . _:genid2511 "PSI:MS"^^ . _:genid2512 . _:genid2512 . _:genid2512 . _:genid2512 "value-type:xsd:float"^^ . _:genid2512 "The allowed value-type for this CV term."^^ . . . _:genid2513 . _:genid2513 . _:genid2513 . _:genid2513 . "OBSOLETE Scan type for the precursor ion (full, Single Ion Monitoring (SIM), Single Reaction Monitoring (SRM))."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001614"^^ . "This term was made obsolete because it's recommended to use MS1 spectrum (MS:1000579), MSn spectrum (MS:1000580), CRM spectrum (MS:1000581), SIM spectrum (MS:1000582) or SRM spectrum (MS:1000583) instead."^^ . "ProteomeDiscoverer:Scan Type"^^ . "true"^^ . _:genid2514 . _:genid2514 . _:genid2514 . _:genid2514 "OBSOLETE Scan type for the precursor ion (full, Single Ion Monitoring (SIM), Single Reaction Monitoring (SRM))."^^ . _:genid2514 "PSI:MS"^^ . _:genid2515 . _:genid2515 . _:genid2515 . _:genid2515 "value-type:xsd:string"^^ . _:genid2515 "The allowed value-type for this CV term."^^ . . . _:genid2516 . _:genid2516 . _:genid2516 . _:genid2516 . "Used to filter out tandem mass spectra that have a total intensity current(sum of the intensities of all peaks in a spectrum) below the specified value."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001615"^^ . "ProteomeDiscoverer:Spectrum Selector:Total Intensity Threshold"^^ . _:genid2517 . _:genid2517 . _:genid2517 . _:genid2517 "Used to filter out tandem mass spectra that have a total intensity current(sum of the intensities of all peaks in a spectrum) below the specified value."^^ . _:genid2517 "PSI:MS"^^ . _:genid2518 . _:genid2518 . _:genid2518 . _:genid2518 "value-type:xsd:float"^^ . _:genid2518 "The allowed value-type for this CV term."^^ . . . _:genid2519 . _:genid2519 . _:genid2519 . _:genid2519 . "Specifies the fragmentation method to use in the search algorithm if it is not included in the scan header."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001616"^^ . "ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements"^^ . _:genid2520 . _:genid2520 . _:genid2520 . _:genid2520 "Specifies the fragmentation method to use in the search algorithm if it is not included in the scan header."^^ . _:genid2520 "PSI:MS"^^ . _:genid2521 . _:genid2521 . _:genid2521 . _:genid2521 "value-type:xsd:string"^^ . _:genid2521 "The allowed value-type for this CV term."^^ . . . _:genid2522 . _:genid2522 . _:genid2522 . _:genid2522 . "Specifies the charge state of the precursor ions, if it is not defined in the scan header."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001617"^^ . "ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements"^^ . _:genid2523 . _:genid2523 . _:genid2523 . _:genid2523 "Specifies the charge state of the precursor ions, if it is not defined in the scan header."^^ . _:genid2523 "PSI:MS"^^ . _:genid2524 . _:genid2524 . _:genid2524 . _:genid2524 "value-type:xsd:int"^^ . _:genid2524 "The allowed value-type for this CV term."^^ . . . _:genid2525 . _:genid2525 . _:genid2525 . _:genid2525 . "Specifies the mass spectrometer to use to produce the spectra, if it is not included in the scan header."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001618"^^ . "ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements"^^ . _:genid2526 . _:genid2526 . _:genid2526 . _:genid2526 "Specifies the mass spectrometer to use to produce the spectra, if it is not included in the scan header."^^ . _:genid2526 "PSI:MS"^^ . _:genid2527 . _:genid2527 . _:genid2527 . _:genid2527 "value-type:xsd:string"^^ . _:genid2527 "The allowed value-type for this CV term."^^ . . . _:genid2528 . _:genid2528 . _:genid2528 . _:genid2528 . "Specifies the MS scan order used to produce the product spectra, if it is not included in the scan header."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001619"^^ . "ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements"^^ . _:genid2529 . _:genid2529 . _:genid2529 . _:genid2529 "Specifies the MS scan order used to produce the product spectra, if it is not included in the scan header."^^ . _:genid2529 "PSI:MS"^^ . _:genid2530 . _:genid2530 . _:genid2530 . _:genid2530 "value-type:xsd:string"^^ . _:genid2530 "The allowed value-type for this CV term."^^ . . . _:genid2531 . _:genid2531 . _:genid2531 . _:genid2531 . "Specifies the polarity of the ions monitored if it is not included in the scan header."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001620"^^ . "ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements"^^ . _:genid2532 . _:genid2532 . _:genid2532 . _:genid2532 "Specifies the polarity of the ions monitored if it is not included in the scan header."^^ . _:genid2532 "PSI:MS"^^ . _:genid2533 . _:genid2533 . _:genid2533 . _:genid2533 "value-type:xsd:string"^^ . _:genid2533 "The allowed value-type for this CV term."^^ . . . _:genid2534 . _:genid2534 . _:genid2534 . _:genid2534 . "Upper retention-time limit."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001621"^^ . "ProteomeDiscoverer:Spectrum Selector:Upper RT Limit"^^ . _:genid2535 . _:genid2535 . _:genid2535 . _:genid2535 "Upper retention-time limit."^^ . _:genid2535 "PSI:MS"^^ . _:genid2536 . _:genid2536 . _:genid2536 . _:genid2536 "value-type:xsd:float"^^ . _:genid2536 "The allowed value-type for this CV term."^^ . . . _:genid2537 . _:genid2537 . _:genid2537 . _:genid2537 . "Specifies the size of the mass-to-charge ratio (m/z) window in daltons used to remove precursors."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001622"^^ . "ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset"^^ . _:genid2538 . _:genid2538 . _:genid2538 . _:genid2538 "Specifies the size of the mass-to-charge ratio (m/z) window in daltons used to remove precursors."^^ . _:genid2538 "PSI:MS"^^ . _:genid2539 . _:genid2539 . _:genid2539 . _:genid2539 "value-type:xsd:float"^^ . _:genid2539 "The allowed value-type for this CV term."^^ . . . _:genid2540 . _:genid2540 . _:genid2540 . _:genid2540 . "Maximum allowed mass of a neutral loss."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001623"^^ . "ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass"^^ . _:genid2541 . _:genid2541 . _:genid2541 . _:genid2541 "Maximum allowed mass of a neutral loss."^^ . _:genid2541 "PSI:MS"^^ . _:genid2542 . _:genid2542 . _:genid2542 . _:genid2542 "value-type:xsd:float"^^ . _:genid2542 "The allowed value-type for this CV term."^^ . . . _:genid2543 . _:genid2543 . _:genid2543 . _:genid2543 . "Determines whether the charge-reduced precursor peaks found in an ETD or ECD spectrum are removed."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001624"^^ . "ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor"^^ . _:genid2544 . _:genid2544 . _:genid2544 . _:genid2544 "Determines whether the charge-reduced precursor peaks found in an ETD or ECD spectrum are removed."^^ . _:genid2544 "PSI:MS"^^ . _:genid2545 . _:genid2545 . _:genid2545 . _:genid2545 "value-type:xsd:boolean"^^ . _:genid2545 "The allowed value-type for this CV term."^^ . . . _:genid2546 . _:genid2546 . _:genid2546 . _:genid2546 . "Determines whether neutral loss peaks are removed from ETD and ECD spectra."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001625"^^ . "ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks"^^ . _:genid2547 . _:genid2547 . _:genid2547 . _:genid2547 "Determines whether neutral loss peaks are removed from ETD and ECD spectra."^^ . _:genid2547 "PSI:MS"^^ . _:genid2548 . _:genid2548 . _:genid2548 . _:genid2548 "value-type:xsd:boolean"^^ . _:genid2548 "The allowed value-type for this CV term."^^ . . . _:genid2549 . _:genid2549 . _:genid2549 . _:genid2549 . "Determines whether overtone peaks are removed from LTQ FT or LTQ FT Ultra ECD spectra."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001626"^^ . "ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses"^^ . _:genid2550 . _:genid2550 . _:genid2550 . _:genid2550 "Determines whether overtone peaks are removed from LTQ FT or LTQ FT Ultra ECD spectra."^^ . _:genid2550 "PSI:MS"^^ . _:genid2551 . _:genid2551 . _:genid2551 . _:genid2551 "value-type:xsd:boolean"^^ . _:genid2551 "The allowed value-type for this CV term."^^ . . . _:genid2552 . _:genid2552 . _:genid2552 . _:genid2552 . "Determines whether precursor overtone peaks in the spectrum are removed from the input spectrum."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001627"^^ . "ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones"^^ . _:genid2553 . _:genid2553 . _:genid2553 . _:genid2553 "Determines whether precursor overtone peaks in the spectrum are removed from the input spectrum."^^ . _:genid2553 "PSI:MS"^^ . _:genid2554 . _:genid2554 . _:genid2554 . _:genid2554 "value-type:xsd:boolean"^^ . _:genid2554 "The allowed value-type for this CV term."^^ . . . _:genid2555 . _:genid2555 . _:genid2555 . _:genid2555 . "Determines whether precursor artifact peaks from the MS2 input spectra are removed."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001628"^^ . "ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak"^^ . _:genid2556 . _:genid2556 . _:genid2556 . _:genid2556 "Determines whether precursor artifact peaks from the MS2 input spectra are removed."^^ . _:genid2556 "PSI:MS"^^ . _:genid2557 . _:genid2557 . _:genid2557 . _:genid2557 "value-type:xsd:boolean"^^ . _:genid2557 "The allowed value-type for this CV term."^^ . . . _:genid2558 . _:genid2558 . _:genid2558 . _:genid2558 . "Determines whether the fragment spectrum for scans with the same precursor mass is grouped, regardless of mass analyzer and activation type."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001629"^^ . "ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch"^^ . _:genid2559 . _:genid2559 . _:genid2559 . _:genid2559 "Determines whether the fragment spectrum for scans with the same precursor mass is grouped, regardless of mass analyzer and activation type."^^ . _:genid2559 "PSI:MS"^^ . _:genid2560 . _:genid2560 . _:genid2560 . _:genid2560 "value-type:xsd:boolean"^^ . _:genid2560 "The allowed value-type for this CV term."^^ . . . _:genid2561 . _:genid2561 . _:genid2561 . _:genid2561 . "Determines whether spectra from different MS order scans can be grouped together."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001630"^^ . "ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch"^^ . _:genid2562 . _:genid2562 . _:genid2562 . _:genid2562 "Determines whether spectra from different MS order scans can be grouped together."^^ . _:genid2562 "PSI:MS"^^ . _:genid2563 . _:genid2563 . _:genid2563 . _:genid2563 "value-type:xsd:boolean"^^ . _:genid2563 "The allowed value-type for this CV term."^^ . . . _:genid2564 . _:genid2564 . _:genid2564 . _:genid2564 . "OBSOLETE Chromatographic window where precursors to be grouped must reside to be considered the same species."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001631"^^ . "This term was made obsolete because it's recommended to use retention time window width (MS:1001907) instead."^^ . "ProteomeDiscoverer:Spectrum Grouper:Max RT Difference"^^ . "true"^^ . _:genid2565 . _:genid2565 . _:genid2565 . _:genid2565 "OBSOLETE Chromatographic window where precursors to be grouped must reside to be considered the same species."^^ . _:genid2565 "PSI:MS"^^ . _:genid2566 . _:genid2566 . _:genid2566 . _:genid2566 "value-type:xsd:float"^^ . _:genid2566 "The allowed value-type for this CV term."^^ . . . _:genid2567 . _:genid2567 . _:genid2567 . _:genid2567 . "Groups spectra measured within the given mass and retention-time tolerances into a single spectrum for analysis."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001632"^^ . "ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion"^^ . _:genid2568 . _:genid2568 . _:genid2568 . _:genid2568 "Groups spectra measured within the given mass and retention-time tolerances into a single spectrum for analysis."^^ . _:genid2568 "PSI:MS"^^ . _:genid2569 . _:genid2569 . _:genid2569 . _:genid2569 "value-type:xsd:string"^^ . _:genid2569 "The allowed value-type for this CV term."^^ . . . _:genid2570 . _:genid2570 . _:genid2570 . _:genid2570 . "Highest charge state that is allowed for the deconvolution of multiply charged data."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001633"^^ . "ProteomeDiscoverer:Xtract:Highest Charge"^^ . _:genid2571 . _:genid2571 . _:genid2571 . _:genid2571 "Highest charge state that is allowed for the deconvolution of multiply charged data."^^ . _:genid2571 "PSI:MS"^^ . _:genid2572 . _:genid2572 . _:genid2572 . _:genid2572 "value-type:xsd:int"^^ . _:genid2572 "The allowed value-type for this CV term."^^ . . . _:genid2573 . _:genid2573 . _:genid2573 . _:genid2573 . "OBSOLETE Highest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001634"^^ . "This term was made obsolete because it's recommended to use scan window upper limit (MS:1000500) instead."^^ . "ProteomeDiscoverer:Xtract:Highest MZ"^^ . "true"^^ . _:genid2574 . _:genid2574 . _:genid2574 . _:genid2574 "OBSOLETE Highest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract."^^ . _:genid2574 "PSI:MS"^^ . _:genid2575 . _:genid2575 . _:genid2575 . _:genid2575 "value-type:xsd:float"^^ . _:genid2575 "The allowed value-type for this CV term."^^ . . . _:genid2576 . _:genid2576 . _:genid2576 . _:genid2576 . "Lowest charge state that is allowed for the deconvolution of multiply charged data."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001635"^^ . "ProteomeDiscoverer:Xtract:Lowest Charge"^^ . _:genid2577 . _:genid2577 . _:genid2577 . _:genid2577 "Lowest charge state that is allowed for the deconvolution of multiply charged data."^^ . _:genid2577 "PSI:MS"^^ . _:genid2578 . _:genid2578 . _:genid2578 . _:genid2578 "value-type:xsd:int"^^ . _:genid2578 "The allowed value-type for this CV term."^^ . . . _:genid2579 . _:genid2579 . _:genid2579 . _:genid2579 . "OBSOLETE Lowest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001636"^^ . "This term was made obsolete because it's recommended to use scan window lower limit (MS:1000501) instead."^^ . "ProteomeDiscoverer:Xtract:Lowest MZ"^^ . "true"^^ . _:genid2580 . _:genid2580 . _:genid2580 . _:genid2580 "OBSOLETE Lowest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract."^^ . _:genid2580 "PSI:MS"^^ . _:genid2581 . _:genid2581 . _:genid2581 . _:genid2581 "value-type:xsd:float"^^ . _:genid2581 "The allowed value-type for this CV term."^^ . . . _:genid2582 . _:genid2582 . _:genid2582 . _:genid2582 . "Determines whether the isotopic pattern, i.e. all isotopes of a mass are removed from the spectrum."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001637"^^ . "ProteomeDiscoverer:Xtract:Monoisotopic Mass Only"^^ . _:genid2583 . _:genid2583 . _:genid2583 . _:genid2583 "Determines whether the isotopic pattern, i.e. all isotopes of a mass are removed from the spectrum."^^ . _:genid2583 "PSI:MS"^^ . _:genid2584 . _:genid2584 . _:genid2584 . _:genid2584 "value-type:xsd:boolean"^^ . _:genid2584 "The allowed value-type for this CV term."^^ . . . _:genid2585 . _:genid2585 . _:genid2585 . _:genid2585 . "Fraction of the more abundant peak that an overlapping multiplet must exceed in order to be processed (deconvoluted)."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001638"^^ . "ProteomeDiscoverer:Xtract:Overlapping Remainder"^^ . _:genid2586 . _:genid2586 . _:genid2586 . _:genid2586 "Fraction of the more abundant peak that an overlapping multiplet must exceed in order to be processed (deconvoluted)."^^ . _:genid2586 "PSI:MS"^^ . _:genid2587 . _:genid2587 . _:genid2587 . _:genid2587 "value-type:xsd:float"^^ . _:genid2587 "The allowed value-type for this CV term."^^ . . . _:genid2588 . _:genid2588 . _:genid2588 . _:genid2588 . "Accuracy required for a pattern fit to be considered valid."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001639"^^ . "ProteomeDiscoverer:Xtract:Required Fitting Accuracy"^^ . _:genid2589 . _:genid2589 . _:genid2589 . _:genid2589 "Accuracy required for a pattern fit to be considered valid."^^ . _:genid2589 "PSI:MS"^^ . _:genid2590 . _:genid2590 . _:genid2590 . _:genid2590 "value-type:xsd:float"^^ . _:genid2590 "The allowed value-type for this CV term."^^ . . . _:genid2591 . _:genid2591 . _:genid2591 . _:genid2591 . "Resolution at mass 400."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001640"^^ . "ProteomeDiscoverer:Xtract:Resolution At 400"^^ . _:genid2592 . _:genid2592 . _:genid2592 . _:genid2592 "Resolution at mass 400."^^ . _:genid2592 "PSI:MS"^^ . _:genid2593 . _:genid2593 . _:genid2593 . _:genid2593 "value-type:xsd:float"^^ . _:genid2593 "The allowed value-type for this CV term."^^ . . . _:genid2594 . _:genid2594 . _:genid2594 . _:genid2594 . "Minimum charge state below which peptides are filtered out."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001641"^^ . "ProteomeDiscoverer:Lowest Charge State"^^ . _:genid2595 . _:genid2595 . _:genid2595 . _:genid2595 "Minimum charge state below which peptides are filtered out."^^ . _:genid2595 "PSI:MS"^^ . _:genid2596 . _:genid2596 . _:genid2596 . _:genid2596 "value-type:xsd:int"^^ . _:genid2596 "The allowed value-type for this CV term."^^ . . . _:genid2597 . _:genid2597 . _:genid2597 . _:genid2597 . "Maximum charge above which peptides are filtered out."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001642"^^ . "ProteomeDiscoverer:Highest Charge State"^^ . _:genid2598 . _:genid2598 . _:genid2598 . _:genid2598 "Maximum charge above which peptides are filtered out."^^ . _:genid2598 "PSI:MS"^^ . _:genid2599 . _:genid2599 . _:genid2599 . _:genid2599 "value-type:xsd:int"^^ . _:genid2599 "The allowed value-type for this CV term."^^ . . . _:genid2600 . _:genid2600 . _:genid2600 . _:genid2600 . "Determines whether spectra with scores above the threshold score are retained rather than filtered out."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001643"^^ . "ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores"^^ . _:genid2601 . _:genid2601 . _:genid2601 . _:genid2601 "Determines whether spectra with scores above the threshold score are retained rather than filtered out."^^ . _:genid2601 "PSI:MS"^^ . _:genid2602 . _:genid2602 . _:genid2602 . _:genid2602 "value-type:xsd:boolean"^^ . _:genid2602 "The allowed value-type for this CV term."^^ . . . _:genid2603 . _:genid2603 . _:genid2603 . _:genid2603 . "Determine dynamic post-translational modifications (PTMs)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001644"^^ . "ProteomeDiscoverer:Dynamic Modification"^^ . _:genid2604 . _:genid2604 . _:genid2604 . _:genid2604 "Determine dynamic post-translational modifications (PTMs)."^^ . _:genid2604 "PSI:MS"^^ . _:genid2605 . _:genid2605 . _:genid2605 . _:genid2605 "value-type:xsd:string"^^ . _:genid2605 "The allowed value-type for this CV term."^^ . . . _:genid2606 . _:genid2606 . _:genid2606 . _:genid2606 . "Static Modification to all occurrences of a named amino acid."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001645"^^ . "ProteomeDiscoverer:Static Modification"^^ . _:genid2607 . _:genid2607 . _:genid2607 . _:genid2607 "Static Modification to all occurrences of a named amino acid."^^ . _:genid2607 "PSI:MS"^^ . _:genid2608 . _:genid2608 . _:genid2608 . _:genid2608 "value-type:xsd:string"^^ . _:genid2608 "The allowed value-type for this CV term."^^ . . . _:genid2609 . _:genid2609 . _:genid2609 . _:genid2609 . "OBSOLETE Determines whether the Proteome Discoverer application searches an additional decoy database."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001646"^^ . "This term was made obsolete because it's recommended to use quality estimation with decoy database (MS:1001194) instead."^^ . "ProteomeDiscoverer:Mascot:Decoy Search"^^ . "true"^^ . _:genid2610 . _:genid2610 . _:genid2610 . _:genid2610 "OBSOLETE Determines whether the Proteome Discoverer application searches an additional decoy database."^^ . _:genid2610 "PSI:MS"^^ . _:genid2611 . _:genid2611 . _:genid2611 . _:genid2611 "value-type:xsd:boolean"^^ . _:genid2611 "The allowed value-type for this CV term."^^ . . . _:genid2612 . _:genid2612 . _:genid2612 . _:genid2612 . "Determines whether to search error-tolerant."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001647"^^ . "ProteomeDiscoverer:Mascot:Error tolerant Search"^^ . _:genid2613 . _:genid2613 . _:genid2613 . _:genid2613 "Determines whether to search error-tolerant."^^ . _:genid2613 "PSI:MS"^^ . _:genid2614 . _:genid2614 . _:genid2614 . _:genid2614 "value-type:xsd:boolean"^^ . _:genid2614 "The allowed value-type for this CV term."^^ . . . _:genid2615 . _:genid2615 . _:genid2615 . _:genid2615 . "Maximum size of the .mgf (Mascot Generic Format) file in MByte."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001648"^^ . "ProteomeDiscoverer:Mascot:Max MGF File Size"^^ . _:genid2616 . _:genid2616 . _:genid2616 . _:genid2616 "Maximum size of the .mgf (Mascot Generic Format) file in MByte."^^ . _:genid2616 "PSI:MS"^^ . _:genid2617 . _:genid2617 . _:genid2617 . _:genid2617 "value-type:xsd:int"^^ . _:genid2617 "The allowed value-type for this CV term."^^ . . . _:genid2618 . _:genid2618 . _:genid2618 . _:genid2618 . "URL (Uniform resource Locator) of the Mascot server."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001649"^^ . "ProteomeDiscoverer:Mascot:Mascot Server URL"^^ . _:genid2619 . _:genid2619 . _:genid2619 . _:genid2619 "URL (Uniform resource Locator) of the Mascot server."^^ . _:genid2619 "PSI:MS"^^ . _:genid2620 . _:genid2620 . _:genid2620 . _:genid2620 "value-type:xsd:string"^^ . _:genid2620 "The allowed value-type for this CV term."^^ . . . _:genid2621 . _:genid2621 . _:genid2621 . _:genid2621 . "Number of attempts to submit the Mascot search."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001650"^^ . "ProteomeDiscoverer:Mascot:Number of attempts to submit the search"^^ . _:genid2622 . _:genid2622 . _:genid2622 . _:genid2622 "Number of attempts to submit the Mascot search."^^ . _:genid2622 "PSI:MS"^^ . _:genid2623 . _:genid2623 . _:genid2623 . _:genid2623 "value-type:xsd:int"^^ . _:genid2623 "The allowed value-type for this CV term."^^ . . . _:genid2624 . _:genid2624 . _:genid2624 . _:genid2624 . "Number of attempts to submit the Mascot search."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001651"^^ . "ProteomeDiscoverer:Mascot:X Static Modification"^^ . _:genid2625 . _:genid2625 . _:genid2625 . _:genid2625 "Number of attempts to submit the Mascot search."^^ . _:genid2625 "PSI:MS"^^ . _:genid2626 . _:genid2626 . _:genid2626 . _:genid2626 "value-type:xsd:string"^^ . _:genid2626 "The allowed value-type for this CV term."^^ . . . _:genid2627 . _:genid2627 . _:genid2627 . _:genid2627 . "OBSOLETE Name of the user submitting the Mascot search."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001652"^^ . "This term was made obsolete because it's recommended to use researcher (MS:1001271) instead."^^ . "ProteomeDiscoverer:Mascot:User Name"^^ . "true"^^ . _:genid2628 . _:genid2628 . _:genid2628 . _:genid2628 "OBSOLETE Name of the user submitting the Mascot search."^^ . _:genid2628 "PSI:MS"^^ . _:genid2629 . _:genid2629 . _:genid2629 . _:genid2629 "value-type:xsd:string"^^ . _:genid2629 "The allowed value-type for this CV term."^^ . . . _:genid2630 . _:genid2630 . _:genid2630 . _:genid2630 . "Time interval between attempts to submit a search in seconds."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001653"^^ . "ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search"^^ . _:genid2631 . _:genid2631 . _:genid2631 . _:genid2631 "Time interval between attempts to submit a search in seconds."^^ . _:genid2631 "PSI:MS"^^ . _:genid2632 . _:genid2632 . _:genid2632 . _:genid2632 "value-type:xsd:string"^^ . _:genid2632 "The allowed value-type for this CV term."^^ . . . _:genid2633 . _:genid2633 . _:genid2633 . _:genid2633 . "OBSOLETE Specifies the enzyme reagent used for protein digestion."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001654"^^ . "This term was made obsolete because it's recommended to use cleavage agent name (MS:1001045) instead."^^ . "ProteomeDiscoverer:Enzyme Name"^^ . "true"^^ . _:genid2634 . _:genid2634 . _:genid2634 . _:genid2634 "OBSOLETE Specifies the enzyme reagent used for protein digestion."^^ . _:genid2634 "PSI:MS"^^ . _:genid2635 . _:genid2635 . _:genid2635 . _:genid2635 "value-type:xsd:string"^^ . _:genid2635 "The allowed value-type for this CV term."^^ . . . _:genid2636 . _:genid2636 . _:genid2636 . _:genid2636 . "OBSOLETE Mass tolerance used for matching fragment peaks in Da or mmu."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001655"^^ . "This term was made obsolete because it's recommended to use search tolerance minus value (MS:1001413) or search tolerance plus value (MS:1001412) instead."^^ . "ProteomeDiscoverer:Fragment Mass Tolerance"^^ . "true"^^ . _:genid2637 . _:genid2637 . _:genid2637 . _:genid2637 "OBSOLETE Mass tolerance used for matching fragment peaks in Da or mmu."^^ . _:genid2637 "PSI:MS"^^ . _:genid2638 . _:genid2638 . _:genid2638 . _:genid2638 "value-type:xsd:float"^^ . _:genid2638 "The allowed value-type for this CV term."^^ . . . _:genid2639 . _:genid2639 . _:genid2639 . _:genid2639 . "Type of instrument used to acquire the data in the raw file."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001656"^^ . "Mascot:Instrument"^^ . _:genid2640 . _:genid2640 . _:genid2640 . _:genid2640 "Type of instrument used to acquire the data in the raw file."^^ . _:genid2640 "PSI:MS"^^ . _:genid2641 . _:genid2641 . _:genid2641 . _:genid2641 "value-type:xsd:string"^^ . _:genid2641 "The allowed value-type for this CV term."^^ . . . _:genid2642 . _:genid2642 . _:genid2642 . _:genid2642 . "Maximum number of missed cleavage sites to consider during the digest."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001657"^^ . "ProteomeDiscoverer:Maximum Missed Cleavage Sites"^^ . _:genid2643 . _:genid2643 . _:genid2643 . _:genid2643 "Maximum number of missed cleavage sites to consider during the digest."^^ . _:genid2643 "PSI:MS"^^ . _:genid2644 . _:genid2644 . _:genid2644 . _:genid2644 "value-type:xsd:int"^^ . _:genid2644 "The allowed value-type for this CV term."^^ . . . _:genid2645 . _:genid2645 . _:genid2645 . _:genid2645 . "Minimum score in the IonScore column that each peptide must exceed in order to be reported."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001658"^^ . "ProteomeDiscoverer:Mascot:Peptide CutOff Score"^^ . _:genid2646 . _:genid2646 . _:genid2646 . _:genid2646 "Minimum score in the IonScore column that each peptide must exceed in order to be reported."^^ . _:genid2646 "PSI:MS"^^ . _:genid2647 . _:genid2647 . _:genid2647 . _:genid2647 "value-type:xsd:float"^^ . _:genid2647 "The allowed value-type for this CV term."^^ . . . _:genid2648 . _:genid2648 . _:genid2648 . _:genid2648 . "OBSOLETE Mass window for which precursor ions are considered to be the same species."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001659"^^ . "This term was made obsolete because it's recommended to use search tolerance minus value (MS:1001413) or search tolerance plus value (MS:1001412) instead."^^ . "ProteomeDiscoverer:Precursor Mass Tolerance"^^ . "true"^^ . _:genid2649 . _:genid2649 . _:genid2649 . _:genid2649 "OBSOLETE Mass window for which precursor ions are considered to be the same species."^^ . _:genid2649 "PSI:MS"^^ . _:genid2650 . _:genid2650 . _:genid2650 . _:genid2650 "value-type:xsd:float"^^ . _:genid2650 "The allowed value-type for this CV term."^^ . . . _:genid2651 . _:genid2651 . _:genid2651 . _:genid2651 . "Minimum protein score in the IonScore column that each protein must exceed in order to be reported."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001660"^^ . "ProteomeDiscoverer:Mascot:Protein CutOff Score"^^ . _:genid2652 . _:genid2652 . _:genid2652 . _:genid2652 "Minimum protein score in the IonScore column that each protein must exceed in order to be reported."^^ . _:genid2652 "PSI:MS"^^ . _:genid2653 . _:genid2653 . _:genid2653 . _:genid2653 "value-type:xsd:float"^^ . _:genid2653 "The allowed value-type for this CV term."^^ . . . _:genid2654 . _:genid2654 . _:genid2654 . _:genid2654 . "OBSOLETE Database to use in the search (configured on the Mascot server)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001661"^^ . "This term was made obsolete because it's recommended to use database name (MS:1001013) instead."^^ . "ProteomeDiscoverer:Protein Database"^^ . "true"^^ . _:genid2655 . _:genid2655 . _:genid2655 . _:genid2655 "OBSOLETE Database to use in the search (configured on the Mascot server)."^^ . _:genid2655 "PSI:MS"^^ . _:genid2656 . _:genid2656 . _:genid2656 . _:genid2656 "value-type:xsd:string"^^ . _:genid2656 "The allowed value-type for this CV term."^^ . . . _:genid2657 . _:genid2657 . _:genid2657 . _:genid2657 . "Specifies a factor that is used in calculating a threshold that determines whether a protein appears in the results report."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001662"^^ . "ProteomeDiscoverer:Mascot:Protein Relevance Factor"^^ . _:genid2658 . _:genid2658 . _:genid2658 . _:genid2658 "Specifies a factor that is used in calculating a threshold that determines whether a protein appears in the results report."^^ . _:genid2658 "PSI:MS"^^ . _:genid2659 . _:genid2659 . _:genid2659 . _:genid2659 "value-type:xsd:float"^^ . _:genid2659 "The allowed value-type for this CV term."^^ . . . _:genid2660 . _:genid2660 . _:genid2660 . _:genid2660 . "Specifies the relaxed target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with moderate confidence."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001663"^^ . "ProteomeDiscoverer:Target FDR Relaxed"^^ . _:genid2661 . _:genid2661 . _:genid2661 . _:genid2661 "Specifies the relaxed target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with moderate confidence."^^ . _:genid2661 "PSI:MS"^^ . _:genid2662 . _:genid2662 . _:genid2662 . _:genid2662 "value-type:xsd:float"^^ . _:genid2662 "The allowed value-type for this CV term."^^ . . . _:genid2663 . _:genid2663 . _:genid2663 . _:genid2663 . "Specifies the strict target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with high confidence."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001664"^^ . "ProteomeDiscoverer:Target FDR Strict"^^ . _:genid2664 . _:genid2664 . _:genid2664 . _:genid2664 "Specifies the strict target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with high confidence."^^ . _:genid2664 "PSI:MS"^^ . _:genid2665 . _:genid2665 . _:genid2665 . _:genid2665 "value-type:xsd:float"^^ . _:genid2665 "The allowed value-type for this CV term."^^ . . . _:genid2666 . _:genid2666 . _:genid2666 . _:genid2666 . "OBSOLETE Limits searches to entries from a particular species or group of species."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001665"^^ . "This term was made obsolete because it's recommended to use taxonomy: scientific name (MS:1001469) instead."^^ . "ProteomeDiscoverer:Mascot:Taxonomy"^^ . "true"^^ . _:genid2667 . _:genid2667 . _:genid2667 . _:genid2667 "OBSOLETE Limits searches to entries from a particular species or group of species."^^ . _:genid2667 "PSI:MS"^^ . _:genid2668 . _:genid2668 . _:genid2668 . _:genid2668 "value-type:xsd:string"^^ . _:genid2668 "The allowed value-type for this CV term."^^ . . . _:genid2669 . _:genid2669 . _:genid2669 . _:genid2669 . "OBSOLETE Use average mass for the precursor."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001666"^^ . "This term was made obsolete because it's recommended to use parent mass type average (MS:1001212) instead."^^ . "ProteomeDiscoverer:Use Average Precursor Mass"^^ . "true"^^ . _:genid2670 . _:genid2670 . _:genid2670 . _:genid2670 "OBSOLETE Use average mass for the precursor."^^ . _:genid2670 "PSI:MS"^^ . _:genid2671 . _:genid2671 . _:genid2671 . _:genid2671 "value-type:xsd:boolean"^^ . _:genid2671 "The allowed value-type for this CV term."^^ . . . _:genid2672 . _:genid2672 . _:genid2672 . _:genid2672 . "OBSOLETE Determines whether to use MudPIT or normal scoring."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001667"^^ . "This term was made obsolete because it's recommended to use Mascot:ProteinScoringMethod (MS:1001318) instead."^^ . "Mascot:use MudPIT scoring"^^ . "true"^^ . _:genid2673 . _:genid2673 . _:genid2673 . _:genid2673 "OBSOLETE Determines whether to use MudPIT or normal scoring."^^ . _:genid2673 "PSI:MS"^^ . _:genid2674 . _:genid2674 . _:genid2674 . _:genid2674 "value-type:xsd:boolean"^^ . _:genid2674 "The allowed value-type for this CV term."^^ . . . _:genid2675 . _:genid2675 . _:genid2675 . _:genid2675 . "Minimum cross-correlation threshold that determines whether peptides in an .srf file are imported."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001668"^^ . "ProteomeDiscoverer:Absolute XCorr Threshold"^^ . _:genid2676 . _:genid2676 . _:genid2676 . _:genid2676 "Minimum cross-correlation threshold that determines whether peptides in an .srf file are imported."^^ . _:genid2676 "PSI:MS"^^ . _:genid2677 . _:genid2677 . _:genid2677 . _:genid2677 "value-type:xsd:float"^^ . _:genid2677 "The allowed value-type for this CV term."^^ . . . _:genid2678 . _:genid2678 . _:genid2678 . _:genid2678 . "Determines whether to calculate a probability score for every peptide match."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001669"^^ . "ProteomeDiscoverer:SEQUEST:Calculate Probability Score"^^ . _:genid2679 . _:genid2679 . _:genid2679 . _:genid2679 "Determines whether to calculate a probability score for every peptide match."^^ . _:genid2679 "PSI:MS"^^ . _:genid2680 . _:genid2680 . _:genid2680 . _:genid2680 "value-type:xsd:boolean"^^ . _:genid2680 "The allowed value-type for this CV term."^^ . . . _:genid2681 . _:genid2681 . _:genid2681 . _:genid2681 . "Dynamic C-terminal modification that is used during the search."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001670"^^ . "ProteomeDiscoverer:SEQUEST:CTerminal Modification"^^ . _:genid2682 . _:genid2682 . _:genid2682 . _:genid2682 "Dynamic C-terminal modification that is used during the search."^^ . _:genid2682 "PSI:MS"^^ . _:genid2683 . _:genid2683 . _:genid2683 . _:genid2683 "value-type:xsd:string"^^ . _:genid2683 "The allowed value-type for this CV term."^^ . . . _:genid2684 . _:genid2684 . _:genid2684 . _:genid2684 . "Percentage of the theoretical ions that must be found in order for a peptide to be scored and retained."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001671"^^ . "ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage"^^ . _:genid2685 . _:genid2685 . _:genid2685 . _:genid2685 "Percentage of the theoretical ions that must be found in order for a peptide to be scored and retained."^^ . _:genid2685 "PSI:MS"^^ . _:genid2686 . _:genid2686 . _:genid2686 . _:genid2686 "value-type:xsd:float"^^ . _:genid2686 "The allowed value-type for this CV term."^^ . . . _:genid2687 . _:genid2687 . _:genid2687 . _:genid2687 . "Maximum number of identical modifications that a single peptide can have."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001672"^^ . "ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide"^^ . _:genid2688 . _:genid2688 . _:genid2688 . _:genid2688 "Maximum number of identical modifications that a single peptide can have."^^ . _:genid2688 "PSI:MS"^^ . _:genid2689 . _:genid2689 . _:genid2689 . _:genid2689 "value-type:xsd:int"^^ . _:genid2689 "The allowed value-type for this CV term."^^ . . . _:genid2690 . _:genid2690 . _:genid2690 . _:genid2690 . "Maximum number of different modifications that a peptide can have, e.g. because of steric hindrance."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001673"^^ . "ProteomeDiscoverer:Max Modifications Per Peptide"^^ . _:genid2691 . _:genid2691 . _:genid2691 . _:genid2691 "Maximum number of different modifications that a peptide can have, e.g. because of steric hindrance."^^ . _:genid2691 "PSI:MS"^^ . _:genid2692 . _:genid2692 . _:genid2692 . _:genid2692 "value-type:xsd:int"^^ . _:genid2692 "The allowed value-type for this CV term."^^ . . . _:genid2693 . _:genid2693 . _:genid2693 . _:genid2693 . "Maximum number of peptides that are searched and scored per spectrum."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001674"^^ . "ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered"^^ . _:genid2694 . _:genid2694 . _:genid2694 . _:genid2694 "Maximum number of peptides that are searched and scored per spectrum."^^ . _:genid2694 "PSI:MS"^^ . _:genid2695 . _:genid2695 . _:genid2695 . _:genid2695 "value-type:xsd:int"^^ . _:genid2695 "The allowed value-type for this CV term."^^ . . . _:genid2696 . _:genid2696 . _:genid2696 . _:genid2696 . "Maximum number of peptide matches reported per spectrum."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001675"^^ . "ProteomeDiscoverer:Maximum Peptides Output"^^ . _:genid2697 . _:genid2697 . _:genid2697 . _:genid2697 "Maximum number of peptide matches reported per spectrum."^^ . _:genid2697 "PSI:MS"^^ . _:genid2698 . _:genid2698 . _:genid2698 . _:genid2698 "value-type:xsd:int"^^ . _:genid2698 "The allowed value-type for this CV term."^^ . . . _:genid2699 . _:genid2699 . _:genid2699 . _:genid2699 . "Maximum number of proteins that a single identified peptide can be associated with during protein assembly."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001676"^^ . "ProteomeDiscoverer:Maximum Protein References Per Peptide"^^ . _:genid2700 . _:genid2700 . _:genid2700 . _:genid2700 "Maximum number of proteins that a single identified peptide can be associated with during protein assembly."^^ . _:genid2700 "PSI:MS"^^ . _:genid2701 . _:genid2701 . _:genid2701 . _:genid2701 "value-type:xsd:int"^^ . _:genid2701 "The allowed value-type for this CV term."^^ . . . _:genid2702 . _:genid2702 . _:genid2702 . _:genid2702 . "Dynamic N-terminal modification that is used during the search."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001677"^^ . "ProteomeDiscoverer:SEQUEST:NTerminal Modification"^^ . _:genid2703 . _:genid2703 . _:genid2703 . _:genid2703 "Dynamic N-terminal modification that is used during the search."^^ . _:genid2703 "PSI:MS"^^ . _:genid2704 . _:genid2704 . _:genid2704 . _:genid2704 "value-type:xsd:string"^^ . _:genid2704 "The allowed value-type for this CV term."^^ . . . _:genid2705 . _:genid2705 . _:genid2705 . _:genid2705 . "Static modification for the C terminal of the peptide used during the search."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001678"^^ . "ProteomeDiscoverer:Peptide CTerminus"^^ . _:genid2706 . _:genid2706 . _:genid2706 . _:genid2706 "Static modification for the C terminal of the peptide used during the search."^^ . _:genid2706 "PSI:MS"^^ . _:genid2707 . _:genid2707 . _:genid2707 . _:genid2707 "value-type:xsd:string"^^ . _:genid2707 "The allowed value-type for this CV term."^^ . . . _:genid2708 . _:genid2708 . _:genid2708 . _:genid2708 . "Static modification for the N terminal of the peptide used during the search."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001679"^^ . "ProteomeDiscoverer:Peptide NTerminus"^^ . _:genid2709 . _:genid2709 . _:genid2709 . _:genid2709 "Static modification for the N terminal of the peptide used during the search."^^ . _:genid2709 "PSI:MS"^^ . _:genid2710 . _:genid2710 . _:genid2710 . _:genid2710 "value-type:xsd:string"^^ . _:genid2710 "The allowed value-type for this CV term."^^ . . . _:genid2711 . _:genid2711 . _:genid2711 . _:genid2711 . "Specifies a factor to apply to the protein score."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001680"^^ . "ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor"^^ . _:genid2712 . _:genid2712 . _:genid2712 . _:genid2712 "Specifies a factor to apply to the protein score."^^ . _:genid2712 "PSI:MS"^^ . _:genid2713 . _:genid2713 . _:genid2713 . _:genid2713 "value-type:xsd:float"^^ . _:genid2713 "The allowed value-type for this CV term."^^ . . . _:genid2714 . _:genid2714 . _:genid2714 . _:genid2714 . "Specifies a peptide threshold that determines whether the protein that it is a part of is scored and retained in the report."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001681"^^ . "ProteomeDiscoverer:Protein Relevance Threshold"^^ . _:genid2715 . _:genid2715 . _:genid2715 . _:genid2715 "Specifies a peptide threshold that determines whether the protein that it is a part of is scored and retained in the report."^^ . _:genid2715 "PSI:MS"^^ . _:genid2716 . _:genid2716 . _:genid2716 . _:genid2716 "value-type:xsd:float"^^ . _:genid2716 "The allowed value-type for this CV term."^^ . . . _:genid2717 . _:genid2717 . _:genid2717 . _:genid2717 . "OBSOLETE Determines whether the Proteome Discoverer application searches against a decoy database."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001682"^^ . "This term was made obsolete because it's recommended to use quality estimation with decoy database (MS:1001194) instead."^^ . "ProteomeDiscoverer:Search Against Decoy Database"^^ . "true"^^ . _:genid2718 . _:genid2718 . _:genid2718 . _:genid2718 "OBSOLETE Determines whether the Proteome Discoverer application searches against a decoy database."^^ . _:genid2718 "PSI:MS"^^ . _:genid2719 . _:genid2719 . _:genid2719 . _:genid2719 "value-type:xsd:boolean"^^ . _:genid2719 "The allowed value-type for this CV term."^^ . . . _:genid2720 . _:genid2720 . _:genid2720 . _:genid2720 . "Use average masses for the fragments."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001683"^^ . "ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses"^^ . _:genid2721 . _:genid2721 . _:genid2721 . _:genid2721 "Use average masses for the fragments."^^ . _:genid2721 "PSI:MS"^^ . _:genid2722 . _:genid2722 . _:genid2722 . _:genid2722 "value-type:xsd:boolean"^^ . _:genid2722 "The allowed value-type for this CV term."^^ . . . _:genid2723 . _:genid2723 . _:genid2723 . _:genid2723 . "Determines whether a ions with neutral loss are used for spectrum matching."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001684"^^ . "ProteomeDiscoverer:Use Neutral Loss a Ions"^^ . _:genid2724 . _:genid2724 . _:genid2724 . _:genid2724 "Determines whether a ions with neutral loss are used for spectrum matching."^^ . _:genid2724 "PSI:MS"^^ . _:genid2725 . _:genid2725 . _:genid2725 . _:genid2725 "value-type:xsd:boolean"^^ . _:genid2725 "The allowed value-type for this CV term."^^ . . . _:genid2726 . _:genid2726 . _:genid2726 . _:genid2726 . "Determines whether b ions with neutral loss are used for spectrum matching."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001685"^^ . "ProteomeDiscoverer:Use Neutral Loss b Ions"^^ . _:genid2727 . _:genid2727 . _:genid2727 . _:genid2727 "Determines whether b ions with neutral loss are used for spectrum matching."^^ . _:genid2727 "PSI:MS"^^ . _:genid2728 . _:genid2728 . _:genid2728 . _:genid2728 "value-type:xsd:boolean"^^ . _:genid2728 "The allowed value-type for this CV term."^^ . . . _:genid2729 . _:genid2729 . _:genid2729 . _:genid2729 . "Determines whether y ions with neutral loss are used for spectrum matching."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001686"^^ . "ProteomeDiscoverer:Use Neutral Loss y Ions"^^ . _:genid2730 . _:genid2730 . _:genid2730 . _:genid2730 "Determines whether y ions with neutral loss are used for spectrum matching."^^ . _:genid2730 "PSI:MS"^^ . _:genid2731 . _:genid2731 . _:genid2731 . _:genid2731 "value-type:xsd:boolean"^^ . _:genid2731 "The allowed value-type for this CV term."^^ . . . _:genid2732 . _:genid2732 . _:genid2732 . _:genid2732 . "Determines whether z ions with neutral loss are used for spectrum matching."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001687"^^ . "ProteomeDiscoverer:Use Neutral Loss z Ions"^^ . _:genid2733 . _:genid2733 . _:genid2733 . _:genid2733 "Determines whether z ions with neutral loss are used for spectrum matching."^^ . _:genid2733 "PSI:MS"^^ . _:genid2734 . _:genid2734 . _:genid2734 . _:genid2734 "value-type:xsd:boolean"^^ . _:genid2734 "The allowed value-type for this CV term."^^ . . . _:genid2735 . _:genid2735 . _:genid2735 . _:genid2735 . "Uses a ions for spectrum matching with this relative factor."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001688"^^ . "ProteomeDiscoverer:SEQUEST:Weight of a Ions"^^ . _:genid2736 . _:genid2736 . _:genid2736 . _:genid2736 "Uses a ions for spectrum matching with this relative factor."^^ . _:genid2736 "PSI:MS"^^ . _:genid2737 . _:genid2737 . _:genid2737 . _:genid2737 "value-type:xsd:float"^^ . _:genid2737 "The allowed value-type for this CV term."^^ . . . _:genid2738 . _:genid2738 . _:genid2738 . _:genid2738 . "Uses b ions for spectrum matching with this relative factor."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001689"^^ . "ProteomeDiscoverer:SEQUEST:Weight of b Ions"^^ . _:genid2739 . _:genid2739 . _:genid2739 . _:genid2739 "Uses b ions for spectrum matching with this relative factor."^^ . _:genid2739 "PSI:MS"^^ . _:genid2740 . _:genid2740 . _:genid2740 . _:genid2740 "value-type:xsd:float"^^ . _:genid2740 "The allowed value-type for this CV term."^^ . . . _:genid2741 . _:genid2741 . _:genid2741 . _:genid2741 . "Uses c ions for spectrum matching with this relative factor."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001690"^^ . "ProteomeDiscoverer:SEQUEST:Weight of c Ions"^^ . _:genid2742 . _:genid2742 . _:genid2742 . _:genid2742 "Uses c ions for spectrum matching with this relative factor."^^ . _:genid2742 "PSI:MS"^^ . _:genid2743 . _:genid2743 . _:genid2743 . _:genid2743 "value-type:xsd:float"^^ . _:genid2743 "The allowed value-type for this CV term."^^ . . . _:genid2744 . _:genid2744 . _:genid2744 . _:genid2744 . "Uses c ions for spectrum matching with this relative factor."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001691"^^ . "ProteomeDiscoverer:SEQUEST:Weight of d Ions"^^ . _:genid2745 . _:genid2745 . _:genid2745 . _:genid2745 "Uses c ions for spectrum matching with this relative factor."^^ . _:genid2745 "PSI:MS"^^ . _:genid2746 . _:genid2746 . _:genid2746 . _:genid2746 "value-type:xsd:float"^^ . _:genid2746 "The allowed value-type for this CV term."^^ . . . _:genid2747 . _:genid2747 . _:genid2747 . _:genid2747 . "Uses c ions for spectrum matching with this relative factor."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001692"^^ . "ProteomeDiscoverer:SEQUEST:Weight of v Ions"^^ . _:genid2748 . _:genid2748 . _:genid2748 . _:genid2748 "Uses c ions for spectrum matching with this relative factor."^^ . _:genid2748 "PSI:MS"^^ . _:genid2749 . _:genid2749 . _:genid2749 . _:genid2749 "value-type:xsd:float"^^ . _:genid2749 "The allowed value-type for this CV term."^^ . . . _:genid2750 . _:genid2750 . _:genid2750 . _:genid2750 . "Uses c ions for spectrum matching with this relative factor."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001693"^^ . "ProteomeDiscoverer:SEQUEST:Weight of w Ions"^^ . _:genid2751 . _:genid2751 . _:genid2751 . _:genid2751 "Uses c ions for spectrum matching with this relative factor."^^ . _:genid2751 "PSI:MS"^^ . _:genid2752 . _:genid2752 . _:genid2752 . _:genid2752 "value-type:xsd:float"^^ . _:genid2752 "The allowed value-type for this CV term."^^ . . . _:genid2753 . _:genid2753 . _:genid2753 . _:genid2753 . "Uses x ions for spectrum matching with this relative factor."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001694"^^ . "ProteomeDiscoverer:SEQUEST:Weight of x Ions"^^ . _:genid2754 . _:genid2754 . _:genid2754 . _:genid2754 "Uses x ions for spectrum matching with this relative factor."^^ . _:genid2754 "PSI:MS"^^ . _:genid2755 . _:genid2755 . _:genid2755 . _:genid2755 "value-type:xsd:float"^^ . _:genid2755 "The allowed value-type for this CV term."^^ . . . _:genid2756 . _:genid2756 . _:genid2756 . _:genid2756 . "Uses y ions for spectrum matching with this relative factor."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001695"^^ . "ProteomeDiscoverer:SEQUEST:Weight of y Ions"^^ . _:genid2757 . _:genid2757 . _:genid2757 . _:genid2757 "Uses y ions for spectrum matching with this relative factor."^^ . _:genid2757 "PSI:MS"^^ . _:genid2758 . _:genid2758 . _:genid2758 . _:genid2758 "value-type:xsd:float"^^ . _:genid2758 "The allowed value-type for this CV term."^^ . . . _:genid2759 . _:genid2759 . _:genid2759 . _:genid2759 . "Uses z ions for spectrum matching with this relative factor."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001696"^^ . "ProteomeDiscoverer:SEQUEST:Weight of z Ions"^^ . _:genid2760 . _:genid2760 . _:genid2760 . _:genid2760 "Uses z ions for spectrum matching with this relative factor."^^ . _:genid2760 "PSI:MS"^^ . _:genid2761 . _:genid2761 . _:genid2761 . _:genid2761 "value-type:xsd:float"^^ . _:genid2761 "The allowed value-type for this CV term."^^ . . . _:genid2762 . _:genid2762 . _:genid2762 . _:genid2762 . "Sets a minimum protein score that each protein must exceed in order to be reported."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001697"^^ . "ProteomeDiscoverer:ZCore:Protein Score Cutoff"^^ . _:genid2763 . _:genid2763 . _:genid2763 . _:genid2763 "Sets a minimum protein score that each protein must exceed in order to be reported."^^ . _:genid2763 "PSI:MS"^^ . _:genid2764 . _:genid2764 . _:genid2764 . _:genid2764 "value-type:xsd:float"^^ . _:genid2764 "The allowed value-type for this CV term."^^ . . . _:genid2765 . _:genid2765 . _:genid2765 . _:genid2765 . "Specifies which peak to select if more than one peak is found inside the integration window."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001698"^^ . "ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method"^^ . _:genid2766 . _:genid2766 . _:genid2766 . _:genid2766 "Specifies which peak to select if more than one peak is found inside the integration window."^^ . _:genid2766 "PSI:MS"^^ . _:genid2767 . _:genid2767 . _:genid2767 . _:genid2767 "value-type:xsd:string"^^ . _:genid2767 "The allowed value-type for this CV term."^^ . . . _:genid2768 . _:genid2768 . _:genid2768 . _:genid2768 . "Specifies the mass-to-charge window that enables one to look for the reporter peaks."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001699"^^ . "ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance"^^ . _:genid2769 . _:genid2769 . _:genid2769 . _:genid2769 "Specifies the mass-to-charge window that enables one to look for the reporter peaks."^^ . _:genid2769 "PSI:MS"^^ . _:genid2770 . _:genid2770 . _:genid2770 . _:genid2770 "value-type:xsd:float"^^ . _:genid2770 "The allowed value-type for this CV term."^^ . . . _:genid2771 . _:genid2771 . _:genid2771 . _:genid2771 . "Quantitation method for isobarically labeled quantitation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001700"^^ . "ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method"^^ . _:genid2772 . _:genid2772 . _:genid2772 . _:genid2772 "Quantitation method for isobarically labeled quantitation."^^ . _:genid2772 "PSI:MS"^^ . _:genid2773 . _:genid2773 . _:genid2773 . _:genid2773 "value-type:xsd:string"^^ . _:genid2773 "The allowed value-type for this CV term."^^ . . . _:genid2774 . _:genid2774 . _:genid2774 . _:genid2774 . "OBSOLETE Format of the exported spectra (dta, mgf or mzData)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001701"^^ . "This term was made obsolete because it's recommended to use one of the 'mass spectrometer file format' terms (MS:1000560) instead."^^ . "ProteomeDiscoverer:Spectrum Exporter:Export Format"^^ . "true"^^ . _:genid2775 . _:genid2775 . _:genid2775 . _:genid2775 "OBSOLETE Format of the exported spectra (dta, mgf or mzData)."^^ . _:genid2775 "PSI:MS"^^ . _:genid2776 . _:genid2776 . _:genid2776 . _:genid2776 "value-type:xsd:string"^^ . _:genid2776 "The allowed value-type for this CV term."^^ . . . _:genid2777 . _:genid2777 . _:genid2777 . _:genid2777 . "Name of the output file that contains the exported data."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001702"^^ . "ProteomeDiscoverer:Spectrum Exporter:File name"^^ . _:genid2778 . _:genid2778 . _:genid2778 . _:genid2778 "Name of the output file that contains the exported data."^^ . _:genid2778 "PSI:MS"^^ . _:genid2779 . _:genid2779 . _:genid2779 . _:genid2779 "value-type:xsd:string"^^ . _:genid2779 "The allowed value-type for this CV term."^^ . . . _:genid2780 . _:genid2780 . _:genid2780 . _:genid2780 . "Influences the modifications search."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001703"^^ . "ProteomeDiscoverer:Search Modifications Only For Identified Proteins"^^ . _:genid2781 . _:genid2781 . _:genid2781 . _:genid2781 "Influences the modifications search."^^ . _:genid2781 "PSI:MS"^^ . _:genid2782 . _:genid2782 . _:genid2782 . _:genid2782 "value-type:xsd:boolean"^^ . _:genid2782 "The allowed value-type for this CV term."^^ . . . _:genid2783 . _:genid2783 . _:genid2783 . _:genid2783 . "Standard high confidence XCorr parameter for charge = 1."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001704"^^ . "ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1"^^ . _:genid2784 . _:genid2784 . _:genid2784 . _:genid2784 "Standard high confidence XCorr parameter for charge = 1."^^ . _:genid2784 "PSI:MS"^^ . _:genid2785 . _:genid2785 . _:genid2785 . _:genid2785 "value-type:xsd:float"^^ . _:genid2785 "The allowed value-type for this CV term."^^ . . . _:genid2786 . _:genid2786 . _:genid2786 . _:genid2786 . "Standard high confidence XCorr parameter for charge = 2."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001705"^^ . "ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2"^^ . _:genid2787 . _:genid2787 . _:genid2787 . _:genid2787 "Standard high confidence XCorr parameter for charge = 2."^^ . _:genid2787 "PSI:MS"^^ . _:genid2788 . _:genid2788 . _:genid2788 . _:genid2788 "value-type:xsd:float"^^ . _:genid2788 "The allowed value-type for this CV term."^^ . . . _:genid2789 . _:genid2789 . _:genid2789 . _:genid2789 . "Standard high confidence XCorr parameter for charge = 3."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001706"^^ . "ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3"^^ . _:genid2790 . _:genid2790 . _:genid2790 . _:genid2790 "Standard high confidence XCorr parameter for charge = 3."^^ . _:genid2790 "PSI:MS"^^ . _:genid2791 . _:genid2791 . _:genid2791 . _:genid2791 "value-type:xsd:float"^^ . _:genid2791 "The allowed value-type for this CV term."^^ . . . _:genid2792 . _:genid2792 . _:genid2792 . _:genid2792 . "Standard high confidence XCorr parameter for charge >= 4."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001707"^^ . "ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4"^^ . _:genid2793 . _:genid2793 . _:genid2793 . _:genid2793 "Standard high confidence XCorr parameter for charge >= 4."^^ . _:genid2793 "PSI:MS"^^ . _:genid2794 . _:genid2794 . _:genid2794 . _:genid2794 "value-type:xsd:float"^^ . _:genid2794 "The allowed value-type for this CV term."^^ . . . _:genid2795 . _:genid2795 . _:genid2795 . _:genid2795 . "Standard medium confidence XCorr parameter for charge = 1."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001708"^^ . "ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1"^^ . _:genid2796 . _:genid2796 . _:genid2796 . _:genid2796 "Standard medium confidence XCorr parameter for charge = 1."^^ . _:genid2796 "PSI:MS"^^ . _:genid2797 . _:genid2797 . _:genid2797 . _:genid2797 "value-type:xsd:float"^^ . _:genid2797 "The allowed value-type for this CV term."^^ . . . _:genid2798 . _:genid2798 . _:genid2798 . _:genid2798 . "Standard medium confidence XCorr parameter for charge = 2."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001709"^^ . "ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2"^^ . _:genid2799 . _:genid2799 . _:genid2799 . _:genid2799 "Standard medium confidence XCorr parameter for charge = 2."^^ . _:genid2799 "PSI:MS"^^ . _:genid2800 . _:genid2800 . _:genid2800 . _:genid2800 "value-type:xsd:float"^^ . _:genid2800 "The allowed value-type for this CV term."^^ . . . _:genid2801 . _:genid2801 . _:genid2801 . _:genid2801 . "Standard medium confidence XCorr parameter for charge = 3."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001710"^^ . "ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3"^^ . _:genid2802 . _:genid2802 . _:genid2802 . _:genid2802 "Standard medium confidence XCorr parameter for charge = 3."^^ . _:genid2802 "PSI:MS"^^ . _:genid2803 . _:genid2803 . _:genid2803 . _:genid2803 "value-type:xsd:float"^^ . _:genid2803 "The allowed value-type for this CV term."^^ . . . _:genid2804 . _:genid2804 . _:genid2804 . _:genid2804 . "Standard medium confidence XCorr parameter for charge >= 4."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001711"^^ . "ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4"^^ . _:genid2805 . _:genid2805 . _:genid2805 . _:genid2805 "Standard medium confidence XCorr parameter for charge >= 4."^^ . _:genid2805 "PSI:MS"^^ . _:genid2806 . _:genid2806 . _:genid2806 . _:genid2806 "value-type:xsd:float"^^ . _:genid2806 "The allowed value-type for this CV term."^^ . . . _:genid2807 . _:genid2807 . _:genid2807 . _:genid2807 . "FT high confidence XCorr parameter for charge = 1."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001712"^^ . "ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1"^^ . _:genid2808 . _:genid2808 . _:genid2808 . _:genid2808 "FT high confidence XCorr parameter for charge = 1."^^ . _:genid2808 "PSI:MS"^^ . _:genid2809 . _:genid2809 . _:genid2809 . _:genid2809 "value-type:xsd:float"^^ . _:genid2809 "The allowed value-type for this CV term."^^ . . . _:genid2810 . _:genid2810 . _:genid2810 . _:genid2810 . "FT high confidence XCorr parameter for charge = 2."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001713"^^ . "ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2"^^ . _:genid2811 . _:genid2811 . _:genid2811 . _:genid2811 "FT high confidence XCorr parameter for charge = 2."^^ . _:genid2811 "PSI:MS"^^ . _:genid2812 . _:genid2812 . _:genid2812 . _:genid2812 "value-type:xsd:float"^^ . _:genid2812 "The allowed value-type for this CV term."^^ . . . _:genid2813 . _:genid2813 . _:genid2813 . _:genid2813 . "FT high confidence XCorr parameter for charge = 3."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001714"^^ . "ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3"^^ . _:genid2814 . _:genid2814 . _:genid2814 . _:genid2814 "FT high confidence XCorr parameter for charge = 3."^^ . _:genid2814 "PSI:MS"^^ . _:genid2815 . _:genid2815 . _:genid2815 . _:genid2815 "value-type:xsd:float"^^ . _:genid2815 "The allowed value-type for this CV term."^^ . . . _:genid2816 . _:genid2816 . _:genid2816 . _:genid2816 . "FT high confidence XCorr parameter for charge >= 4."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001715"^^ . "ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4"^^ . _:genid2817 . _:genid2817 . _:genid2817 . _:genid2817 "FT high confidence XCorr parameter for charge >= 4."^^ . _:genid2817 "PSI:MS"^^ . _:genid2818 . _:genid2818 . _:genid2818 . _:genid2818 "value-type:xsd:float"^^ . _:genid2818 "The allowed value-type for this CV term."^^ . . . _:genid2819 . _:genid2819 . _:genid2819 . _:genid2819 . "FT medium confidence XCorr parameter for charge = 1."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001716"^^ . "ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1"^^ . _:genid2820 . _:genid2820 . _:genid2820 . _:genid2820 "FT medium confidence XCorr parameter for charge = 1."^^ . _:genid2820 "PSI:MS"^^ . _:genid2821 . _:genid2821 . _:genid2821 . _:genid2821 "value-type:xsd:float"^^ . _:genid2821 "The allowed value-type for this CV term."^^ . . . _:genid2822 . _:genid2822 . _:genid2822 . _:genid2822 . "FT medium confidence XCorr parameter for charge = 2."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001717"^^ . "ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2"^^ . _:genid2823 . _:genid2823 . _:genid2823 . _:genid2823 "FT medium confidence XCorr parameter for charge = 2."^^ . _:genid2823 "PSI:MS"^^ . _:genid2824 . _:genid2824 . _:genid2824 . _:genid2824 "value-type:xsd:float"^^ . _:genid2824 "The allowed value-type for this CV term."^^ . . . _:genid2825 . _:genid2825 . _:genid2825 . _:genid2825 . "FT medium confidence XCorr parameter for charge = 3."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001718"^^ . "ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3"^^ . _:genid2826 . _:genid2826 . _:genid2826 . _:genid2826 "FT medium confidence XCorr parameter for charge = 3."^^ . _:genid2826 "PSI:MS"^^ . _:genid2827 . _:genid2827 . _:genid2827 . _:genid2827 "value-type:xsd:float"^^ . _:genid2827 "The allowed value-type for this CV term."^^ . . . _:genid2828 . _:genid2828 . _:genid2828 . _:genid2828 . "FT medium confidence XCorr parameter for charge >= 4."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001719"^^ . "ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4"^^ . _:genid2829 . _:genid2829 . _:genid2829 . _:genid2829 "FT medium confidence XCorr parameter for charge >= 4."^^ . _:genid2829 "PSI:MS"^^ . _:genid2830 . _:genid2830 . _:genid2830 . _:genid2830 "value-type:xsd:float"^^ . _:genid2830 "The allowed value-type for this CV term."^^ . . . _:genid2831 . _:genid2831 . _:genid2831 . _:genid2831 . "OBSOLETE ProteomeDiscoverer's 1st dynamic post-translational modification (PTM) input parameter."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001720"^^ . "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead."^^ . "ProteomeDiscoverer:1. Dynamic Modification"^^ . "true"^^ . _:genid2832 . _:genid2832 . _:genid2832 . _:genid2832 "OBSOLETE ProteomeDiscoverer's 1st dynamic post-translational modification (PTM) input parameter."^^ . _:genid2832 "PSI:PI"^^ . _:genid2833 . _:genid2833 . _:genid2833 . _:genid2833 "value-type:xsd:string"^^ . _:genid2833 "The allowed value-type for this CV term."^^ . . . _:genid2834 . _:genid2834 . _:genid2834 . _:genid2834 . "OBSOLETE ProteomeDiscoverer's 2nd dynamic post-translational modification (PTM) input parameter."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001721"^^ . "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead."^^ . "ProteomeDiscoverer:2. Dynamic Modification"^^ . "true"^^ . _:genid2835 . _:genid2835 . _:genid2835 . _:genid2835 "OBSOLETE ProteomeDiscoverer's 2nd dynamic post-translational modification (PTM) input parameter."^^ . _:genid2835 "PSI:PI"^^ . _:genid2836 . _:genid2836 . _:genid2836 . _:genid2836 "value-type:xsd:string"^^ . _:genid2836 "The allowed value-type for this CV term."^^ . . . _:genid2837 . _:genid2837 . _:genid2837 . _:genid2837 . "OBSOLETE ProteomeDiscoverer's 3rd dynamic post-translational modification (PTM) input parameter."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001722"^^ . "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead."^^ . "ProteomeDiscoverer:3. Dynamic Modification"^^ . "true"^^ . _:genid2838 . _:genid2838 . _:genid2838 . _:genid2838 "OBSOLETE ProteomeDiscoverer's 3rd dynamic post-translational modification (PTM) input parameter."^^ . _:genid2838 "PSI:PI"^^ . _:genid2839 . _:genid2839 . _:genid2839 . _:genid2839 "value-type:xsd:string"^^ . _:genid2839 "The allowed value-type for this CV term."^^ . . . _:genid2840 . _:genid2840 . _:genid2840 . _:genid2840 . "OBSOLETE ProteomeDiscoverer's 4th dynamic post-translational modification (PTM) input parameter."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001723"^^ . "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead."^^ . "ProteomeDiscoverer:4. Dynamic Modification"^^ . "true"^^ . _:genid2841 . _:genid2841 . _:genid2841 . _:genid2841 "OBSOLETE ProteomeDiscoverer's 4th dynamic post-translational modification (PTM) input parameter."^^ . _:genid2841 "PSI:PI"^^ . _:genid2842 . _:genid2842 . _:genid2842 . _:genid2842 "value-type:xsd:string"^^ . _:genid2842 "The allowed value-type for this CV term."^^ . . . _:genid2843 . _:genid2843 . _:genid2843 . _:genid2843 . "Static Modification for X."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001724"^^ . "ProteomeDiscoverer:Static Modification for X"^^ . _:genid2844 . _:genid2844 . _:genid2844 . _:genid2844 "Static Modification for X."^^ . _:genid2844 "PSI:MS"^^ . _:genid2845 . _:genid2845 . _:genid2845 . _:genid2845 "value-type:xsd:string"^^ . _:genid2845 "The allowed value-type for this CV term."^^ . . . _:genid2846 . _:genid2846 . _:genid2846 . _:genid2846 . "Minimal initial peptide probability to contribute to analysis."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001725"^^ . "ProteomeDiscoverer:Initial minimal peptide probability"^^ . _:genid2847 . _:genid2847 . _:genid2847 . _:genid2847 "Minimal initial peptide probability to contribute to analysis."^^ . _:genid2847 "PSI:MS"^^ . _:genid2848 . _:genid2848 . _:genid2848 . _:genid2848 "value-type:xsd:float"^^ . _:genid2848 "The allowed value-type for this CV term."^^ . . . _:genid2849 . _:genid2849 . _:genid2849 . _:genid2849 . "Minimum adjusted peptide probability contributing to protein probability."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001726"^^ . "ProteomeDiscoverer:Minimal peptide probability"^^ . _:genid2850 . _:genid2850 . _:genid2850 . _:genid2850 "Minimum adjusted peptide probability contributing to protein probability."^^ . _:genid2850 "PSI:MS"^^ . _:genid2851 . _:genid2851 . _:genid2851 . _:genid2851 "value-type:xsd:float"^^ . _:genid2851 "The allowed value-type for this CV term."^^ . . . _:genid2852 . _:genid2852 . _:genid2852 . _:genid2852 . "Minimum peptide weight contributing to protein probability."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001727"^^ . "ProteomeDiscoverer:Minimal peptide weight"^^ . _:genid2853 . _:genid2853 . _:genid2853 . _:genid2853 "Minimum peptide weight contributing to protein probability."^^ . _:genid2853 "PSI:MS"^^ . _:genid2854 . _:genid2854 . _:genid2854 . _:genid2854 "value-type:xsd:float"^^ . _:genid2854 "The allowed value-type for this CV term."^^ . . . _:genid2855 . _:genid2855 . _:genid2855 . _:genid2855 . "Number of spectra from 1+ precursor ions."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001728"^^ . "ProteomeDiscoverer:Number of input1 spectra"^^ . _:genid2856 . _:genid2856 . _:genid2856 . _:genid2856 "Number of spectra from 1+ precursor ions."^^ . _:genid2856 "PSI:MS"^^ . _:genid2857 . _:genid2857 . _:genid2857 . _:genid2857 "value-type:xsd:int"^^ . _:genid2857 "The allowed value-type for this CV term."^^ . . . _:genid2858 . _:genid2858 . _:genid2858 . _:genid2858 . "Number of spectra from 2+ precursor ions."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001729"^^ . "ProteomeDiscoverer:Number of input2 spectra"^^ . _:genid2859 . _:genid2859 . _:genid2859 . _:genid2859 "Number of spectra from 2+ precursor ions."^^ . _:genid2859 "PSI:MS"^^ . _:genid2860 . _:genid2860 . _:genid2860 . _:genid2860 "value-type:xsd:int"^^ . _:genid2860 "The allowed value-type for this CV term."^^ . . . _:genid2861 . _:genid2861 . _:genid2861 . _:genid2861 . "Number of spectra from 3+ precursor ions."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001730"^^ . "ProteomeDiscoverer:Number of input3 spectra"^^ . _:genid2862 . _:genid2862 . _:genid2862 . _:genid2862 "Number of spectra from 3+ precursor ions."^^ . _:genid2862 "PSI:MS"^^ . _:genid2863 . _:genid2863 . _:genid2863 . _:genid2863 "value-type:xsd:int"^^ . _:genid2863 "The allowed value-type for this CV term."^^ . . . _:genid2864 . _:genid2864 . _:genid2864 . _:genid2864 . "Number of spectra from 4+ precursor ions."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001731"^^ . "ProteomeDiscoverer:Number of input4 spectra"^^ . _:genid2865 . _:genid2865 . _:genid2865 . _:genid2865 "Number of spectra from 4+ precursor ions."^^ . _:genid2865 "PSI:MS"^^ . _:genid2866 . _:genid2866 . _:genid2866 . _:genid2866 "value-type:xsd:int"^^ . _:genid2866 "The allowed value-type for this CV term."^^ . . . _:genid2867 . _:genid2867 . _:genid2867 . _:genid2867 . "Number of spectra from 5+ precursor ions."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001732"^^ . "ProteomeDiscoverer:Number of input5 spectra"^^ . _:genid2868 . _:genid2868 . _:genid2868 . _:genid2868 "Number of spectra from 5+ precursor ions."^^ . _:genid2868 "PSI:MS"^^ . _:genid2869 . _:genid2869 . _:genid2869 . _:genid2869 "value-type:xsd:int"^^ . _:genid2869 "The allowed value-type for this CV term."^^ . . . _:genid2870 . _:genid2870 . _:genid2870 . _:genid2870 . "Total number of predicted correct protein ids (sum of probabilities)."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001733"^^ . "ProteomeDiscoverer:Number of predicted correct proteins"^^ . _:genid2871 . _:genid2871 . _:genid2871 . _:genid2871 "Total number of predicted correct protein ids (sum of probabilities)."^^ . _:genid2871 "PSI:MS"^^ . _:genid2872 . _:genid2872 . _:genid2872 . _:genid2872 "value-type:xsd:float"^^ . _:genid2872 "The allowed value-type for this CV term."^^ . . . _:genid2873 . _:genid2873 . _:genid2873 . _:genid2873 . "OBSOLETE Sample organism (used for annotation purposes)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001734"^^ . "This term was made obsolete because it's recommended to use taxonomy: scientific name (MS:1001469) instead."^^ . "ProteomeDiscoverer:Organism"^^ . "true"^^ . _:genid2874 . _:genid2874 . _:genid2874 . _:genid2874 "OBSOLETE Sample organism (used for annotation purposes)."^^ . _:genid2874 "PSI:MS"^^ . _:genid2875 . _:genid2875 . _:genid2875 . _:genid2875 "value-type:xsd:string"^^ . _:genid2875 "The allowed value-type for this CV term."^^ . . . _:genid2876 . _:genid2876 . _:genid2876 . _:genid2876 . "OBSOLETE Full path database name."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001735"^^ . "This term was made obsolete. Use attribute in mzIdentML / mzQuantML instead."^^ . "ProteomeDiscoverer:Reference Database"^^ . "true"^^ . _:genid2877 . _:genid2877 . _:genid2877 . _:genid2877 "OBSOLETE Full path database name."^^ . _:genid2877 "PSI:MS"^^ . _:genid2878 . _:genid2878 . _:genid2878 . _:genid2878 "value-type:xsd:string"^^ . _:genid2878 "The allowed value-type for this CV term."^^ . . . _:genid2879 . _:genid2879 . _:genid2879 . _:genid2879 . "Residues considered equivalent when comparing peptides."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001736"^^ . "ProteomeDiscoverer:Residue substitution list"^^ . _:genid2880 . _:genid2880 . _:genid2880 . _:genid2880 "Residues considered equivalent when comparing peptides."^^ . _:genid2880 "PSI:MS"^^ . _:genid2881 . _:genid2881 . _:genid2881 . _:genid2881 "value-type:xsd:string"^^ . _:genid2881 "The allowed value-type for this CV term."^^ . . . _:genid2882 . _:genid2882 . _:genid2882 . _:genid2882 . "OBSOLETE File type (if not pepXML)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001737"^^ . "This term was made obsolete because it's recommended to use mass spectrometer file format (MS:1000560) instead."^^ . "ProteomeDiscoverer:Source file extension"^^ . "true"^^ . _:genid2883 . _:genid2883 . _:genid2883 . _:genid2883 "OBSOLETE File type (if not pepXML)."^^ . _:genid2883 "PSI:MS"^^ . _:genid2884 . _:genid2884 . _:genid2884 . _:genid2884 "value-type:xsd:string"^^ . _:genid2884 "The allowed value-type for this CV term."^^ . . . _:genid2885 . _:genid2885 . _:genid2885 . _:genid2885 . "OBSOLETE Input pepXML files."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001738"^^ . "This term was made obsolete because it's recommended to use pepXML file (MS:1001421) instead."^^ . "ProteomeDiscoverer:Source Files"^^ . "true"^^ . _:genid2886 . _:genid2886 . _:genid2886 . _:genid2886 "OBSOLETE Input pepXML files."^^ . _:genid2886 "PSI:MS"^^ . _:genid2887 . _:genid2887 . _:genid2887 . _:genid2887 "value-type:xsd:string"^^ . _:genid2887 "The allowed value-type for this CV term."^^ . . . _:genid2888 . _:genid2888 . _:genid2888 . _:genid2888 . "OBSOLETE Input pepXML files (old)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001739"^^ . "This term was made obsolete because it's recommended to use pepXML file (MS:1001421) instead."^^ . "ProteomeDiscoverer:Source Files old"^^ . "true"^^ . _:genid2889 . _:genid2889 . _:genid2889 . _:genid2889 "OBSOLETE Input pepXML files (old)."^^ . _:genid2889 "PSI:MS"^^ . _:genid2890 . _:genid2890 . _:genid2890 . _:genid2890 "value-type:xsd:string"^^ . _:genid2890 "The allowed value-type for this CV term."^^ . . . _:genid2891 . _:genid2891 . _:genid2891 . _:genid2891 . "Windows full path for database."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001740"^^ . "ProteomeDiscoverer:WinCyg reference database"^^ . _:genid2892 . _:genid2892 . _:genid2892 . _:genid2892 "Windows full path for database."^^ . _:genid2892 "PSI:MS"^^ . _:genid2893 . _:genid2893 . _:genid2893 . _:genid2893 "value-type:xsd:string"^^ . _:genid2893 "The allowed value-type for this CV term."^^ . . . _:genid2894 . _:genid2894 . _:genid2894 . _:genid2894 . "Windows pepXML file names."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001741"^^ . "ProteomeDiscoverer:WinCyg source files"^^ . _:genid2895 . _:genid2895 . _:genid2895 . _:genid2895 "Windows pepXML file names."^^ . _:genid2895 "PSI:MS"^^ . _:genid2896 . _:genid2896 . _:genid2896 . _:genid2896 "value-type:xsd:string"^^ . _:genid2896 "The allowed value-type for this CV term."^^ . . . "Finnigan LTQ Orbitrap Velos MS."^^ . "MS"^^ . "MS:1001742"^^ . "LTQ Orbitrap Velos"^^ . _:genid2897 . _:genid2897 . _:genid2897 . _:genid2897 "Finnigan LTQ Orbitrap Velos MS."^^ . _:genid2897 "PSI:MS"^^ . . . _:genid2898 . _:genid2898 . _:genid2898 . _:genid2898 . "Determines if to use A ions for spectrum matching."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001743"^^ . "ProteomeDiscoverer:Mascot:Weight of A Ions"^^ . _:genid2899 . _:genid2899 . _:genid2899 . _:genid2899 "Determines if to use A ions for spectrum matching."^^ . _:genid2899 "PSI:MS"^^ . _:genid2900 . _:genid2900 . _:genid2900 . _:genid2900 "value-type:xsd:boolean"^^ . _:genid2900 "The allowed value-type for this CV term."^^ . . . _:genid2901 . _:genid2901 . _:genid2901 . _:genid2901 . "Determines if to use B ions for spectrum matching."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001744"^^ . "ProteomeDiscoverer:Mascot:Weight of B Ions"^^ . _:genid2902 . _:genid2902 . _:genid2902 . _:genid2902 "Determines if to use B ions for spectrum matching."^^ . _:genid2902 "PSI:MS"^^ . _:genid2903 . _:genid2903 . _:genid2903 . _:genid2903 "value-type:xsd:boolean"^^ . _:genid2903 "The allowed value-type for this CV term."^^ . . . _:genid2904 . _:genid2904 . _:genid2904 . _:genid2904 . "Determines if to use C ions for spectrum matching."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001745"^^ . "ProteomeDiscoverer:Mascot:Weight of C Ions"^^ . _:genid2905 . _:genid2905 . _:genid2905 . _:genid2905 "Determines if to use C ions for spectrum matching."^^ . _:genid2905 "PSI:MS"^^ . _:genid2906 . _:genid2906 . _:genid2906 . _:genid2906 "value-type:xsd:boolean"^^ . _:genid2906 "The allowed value-type for this CV term."^^ . . . _:genid2907 . _:genid2907 . _:genid2907 . _:genid2907 . "Determines if to use D ions for spectrum matching."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001746"^^ . "ProteomeDiscoverer:Mascot:Weight of D Ions"^^ . _:genid2908 . _:genid2908 . _:genid2908 . _:genid2908 "Determines if to use D ions for spectrum matching."^^ . _:genid2908 "PSI:MS"^^ . _:genid2909 . _:genid2909 . _:genid2909 . _:genid2909 "value-type:xsd:boolean"^^ . _:genid2909 "The allowed value-type for this CV term."^^ . . . _:genid2910 . _:genid2910 . _:genid2910 . _:genid2910 . "Determines if to use V ions for spectrum matching."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001747"^^ . "ProteomeDiscoverer:Mascot:Weight of V Ions"^^ . _:genid2911 . _:genid2911 . _:genid2911 . _:genid2911 "Determines if to use V ions for spectrum matching."^^ . _:genid2911 "PSI:MS"^^ . _:genid2912 . _:genid2912 . _:genid2912 . _:genid2912 "value-type:xsd:boolean"^^ . _:genid2912 "The allowed value-type for this CV term."^^ . . . _:genid2913 . _:genid2913 . _:genid2913 . _:genid2913 . "Determines if to use W ions for spectrum matching."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001748"^^ . "ProteomeDiscoverer:Mascot:Weight of W Ions"^^ . _:genid2914 . _:genid2914 . _:genid2914 . _:genid2914 "Determines if to use W ions for spectrum matching."^^ . _:genid2914 "PSI:MS"^^ . _:genid2915 . _:genid2915 . _:genid2915 . _:genid2915 "value-type:xsd:boolean"^^ . _:genid2915 "The allowed value-type for this CV term."^^ . . . _:genid2916 . _:genid2916 . _:genid2916 . _:genid2916 . "Determines if to use X ions for spectrum matching."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001749"^^ . "ProteomeDiscoverer:Mascot:Weight of X Ions"^^ . _:genid2917 . _:genid2917 . _:genid2917 . _:genid2917 "Determines if to use X ions for spectrum matching."^^ . _:genid2917 "PSI:MS"^^ . _:genid2918 . _:genid2918 . _:genid2918 . _:genid2918 "value-type:xsd:boolean"^^ . _:genid2918 "The allowed value-type for this CV term."^^ . . . _:genid2919 . _:genid2919 . _:genid2919 . _:genid2919 . "Determines if to use Y ions for spectrum matching."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001750"^^ . "ProteomeDiscoverer:Mascot:Weight of Y Ions"^^ . _:genid2920 . _:genid2920 . _:genid2920 . _:genid2920 "Determines if to use Y ions for spectrum matching."^^ . _:genid2920 "PSI:MS"^^ . _:genid2921 . _:genid2921 . _:genid2921 . _:genid2921 "value-type:xsd:boolean"^^ . _:genid2921 "The allowed value-type for this CV term."^^ . . . _:genid2922 . _:genid2922 . _:genid2922 . _:genid2922 . "Determines if to use z ions for spectrum matching."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001751"^^ . "ProteomeDiscoverer:Mascot:Weight of Z Ions"^^ . _:genid2923 . _:genid2923 . _:genid2923 . _:genid2923 "Determines if to use z ions for spectrum matching."^^ . _:genid2923 "PSI:MS"^^ . _:genid2924 . _:genid2924 . _:genid2924 . _:genid2924 "value-type:xsd:boolean"^^ . _:genid2924 "The allowed value-type for this CV term."^^ . . . _:genid2925 . _:genid2925 . _:genid2925 . _:genid2925 . "Determines if to use precursor reevaluation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001752"^^ . "ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation"^^ . _:genid2926 . _:genid2926 . _:genid2926 . _:genid2926 "Determines if to use precursor reevaluation."^^ . _:genid2926 "PSI:MS"^^ . _:genid2927 . _:genid2927 . _:genid2927 . _:genid2927 "value-type:xsd:boolean"^^ . _:genid2927 "The allowed value-type for this CV term."^^ . . . _:genid2928 . _:genid2928 . _:genid2928 . _:genid2928 . "Signal-to-Noise ratio below which peaks are removed (in FT mode only)."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001753"^^ . "ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly"^^ . _:genid2929 . _:genid2929 . _:genid2929 . _:genid2929 "Signal-to-Noise ratio below which peaks are removed (in FT mode only)."^^ . _:genid2929 "PSI:MS"^^ . _:genid2930 . _:genid2930 . _:genid2930 . _:genid2930 "value-type:xsd:float"^^ . _:genid2930 "The allowed value-type for this CV term."^^ . . . _:genid2931 . _:genid2931 . _:genid2931 . _:genid2931 . "Unknown Mascot parameter which ProteomeDiscoverer uses for mascot searches."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001754"^^ . "ProteomeDiscoverer:Mascot:Please Do not Touch this"^^ . _:genid2932 . _:genid2932 . _:genid2932 . _:genid2932 "Unknown Mascot parameter which ProteomeDiscoverer uses for mascot searches."^^ . _:genid2932 "PSI:MS"^^ . _:genid2933 . _:genid2933 . _:genid2933 . _:genid2933 "value-type:xsd:string"^^ . _:genid2933 "The allowed value-type for this CV term."^^ . . . _:genid2934 . _:genid2934 . _:genid2934 . _:genid2934 . "Phone number of the contact person or organization."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001755"^^ . "contact phone number"^^ . _:genid2935 . _:genid2935 . _:genid2935 . _:genid2935 "Phone number of the contact person or organization."^^ . _:genid2935 "PSI:MS"^^ . _:genid2936 . _:genid2936 . _:genid2936 . _:genid2936 "value-type:xsd:string"^^ . _:genid2936 "The allowed value-type for this CV term."^^ . . . _:genid2937 . _:genid2937 . _:genid2937 . _:genid2937 . "Fax number for the contact person or organization."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001756"^^ . "contact fax number"^^ . _:genid2938 . _:genid2938 . _:genid2938 . _:genid2938 "Fax number for the contact person or organization."^^ . _:genid2938 "PSI:MS"^^ . _:genid2939 . _:genid2939 . _:genid2939 . _:genid2939 "value-type:xsd:string"^^ . _:genid2939 "The allowed value-type for this CV term."^^ . . . _:genid2940 . _:genid2940 . _:genid2940 . _:genid2940 . "Toll-free phone number of the contact person or organization."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001757"^^ . "contact toll-free phone number"^^ . _:genid2941 . _:genid2941 . _:genid2941 . _:genid2941 "Toll-free phone number of the contact person or organization."^^ . _:genid2941 "PSI:MS"^^ . _:genid2942 . _:genid2942 . _:genid2942 . _:genid2942 "value-type:xsd:string"^^ . _:genid2942 "The allowed value-type for this CV term."^^ . . . _:genid2943 . _:genid2943 . _:genid2943 . _:genid2943 . "Significance threshold type used in Mascot reporting (either 'identity' or 'homology')."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001758"^^ . "Mascot:SigThresholdType"^^ . _:genid2944 . _:genid2944 . _:genid2944 . _:genid2944 "Significance threshold type used in Mascot reporting (either 'identity' or 'homology')."^^ . _:genid2944 "PSI:MS"^^ . _:genid2945 . _:genid2945 . _:genid2945 . _:genid2945 "value-type:xsd:string"^^ . _:genid2945 "The allowed value-type for this CV term."^^ . . . _:genid2946 . _:genid2946 . _:genid2946 . _:genid2946 . "Strategy used by Mascot to group proteins with same peptide matches (one of 'none', 'Occam's razor' or 'family clustering')."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001759"^^ . "Mascot:ProteinGrouping"^^ . _:genid2947 . _:genid2947 . _:genid2947 . _:genid2947 "Strategy used by Mascot to group proteins with same peptide matches (one of 'none', 'Occam's razor' or 'family clustering')."^^ . _:genid2947 "PSI:MS"^^ . _:genid2948 . _:genid2948 . _:genid2948 . _:genid2948 "value-type:xsd:string"^^ . _:genid2948 "The allowed value-type for this CV term."^^ . . . _:genid2949 . _:genid2949 . _:genid2949 . _:genid2949 . "List of Percolator features that were used in processing the peptide matches. Typical Percolator features are 'retentionTime', 'dM', 'mScore', 'lgDScore', 'mrCalc', 'charge' and 'dMppm'."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001760"^^ . "Percolator:features"^^ . _:genid2950 . _:genid2950 . _:genid2950 . _:genid2950 "List of Percolator features that were used in processing the peptide matches. Typical Percolator features are 'retentionTime', 'dM', 'mScore', 'lgDScore', 'mrCalc', 'charge' and 'dMppm'."^^ . _:genid2950 "PSI:MS"^^ . _:genid2951 . _:genid2951 . _:genid2951 . _:genid2951 "value-type:xsd:string"^^ . _:genid2951 "The allowed value-type for this CV term."^^ . . . "Waters LC-system ACQUITY UPLC."^^ . "MS"^^ . "MS:1001761"^^ . "ACQUITY UPLC"^^ . _:genid2952 . _:genid2952 . _:genid2952 . _:genid2952 "Waters LC-system ACQUITY UPLC."^^ . _:genid2952 "PSI:MS"^^ . . . "Waters LC-system ACQUITY UPLC H-Class."^^ . "MS"^^ . "MS:1001762"^^ . "ACQUITY UPLC H-Class"^^ . _:genid2953 . _:genid2953 . _:genid2953 . _:genid2953 "Waters LC-system ACQUITY UPLC H-Class."^^ . _:genid2953 "PSI:MS"^^ . . . "Waters LC-system ACQUITY UPLC H-Class Bio."^^ . "MS"^^ . "MS:1001763"^^ . "ACQUITY UPLC H-Class Bio"^^ . _:genid2954 . _:genid2954 . _:genid2954 . _:genid2954 "Waters LC-system ACQUITY UPLC H-Class Bio."^^ . _:genid2954 "PSI:MS"^^ . . . "Waters LC-system ACQUITY UPLC I-Class."^^ . "MS"^^ . "MS:1001764"^^ . "ACQUITY UPLC I-Class"^^ . _:genid2955 . _:genid2955 . _:genid2955 . _:genid2955 "Waters LC-system ACQUITY UPLC I-Class."^^ . _:genid2955 "PSI:MS"^^ . . . "Waters LC-system ACQUITY UPLC Systems with 2D Technology."^^ . "MS"^^ . "MS:1001765"^^ . "ACQUITY UPLC Systems with 2D Technology"^^ . _:genid2956 . _:genid2956 . _:genid2956 . _:genid2956 "Waters LC-system ACQUITY UPLC Systems with 2D Technology."^^ . _:genid2956 "PSI:MS"^^ . . . "Waters LC-system nanoACQUITY UPLC."^^ . "MS"^^ . "MS:1001766"^^ . "nanoACQUITY UPLC"^^ . _:genid2957 . _:genid2957 . _:genid2957 . _:genid2957 "Waters LC-system nanoACQUITY UPLC."^^ . _:genid2957 "PSI:MS"^^ . . . "Waters LC-system nanoACQUITY UPLC System with 1D Technology."^^ . "MS"^^ . "MS:1001767"^^ . "nanoACQUITY UPLC System with 1D Technology"^^ . _:genid2958 . _:genid2958 . _:genid2958 . _:genid2958 "Waters LC-system nanoACQUITY UPLC System with 1D Technology."^^ . _:genid2958 "PSI:MS"^^ . . . "Waters LC-system nanoACQUITY UPLC with HDX Technology."^^ . "MS"^^ . "MS:1001768"^^ . "nanoACQUITY UPLC with HDX Technology"^^ . _:genid2959 . _:genid2959 . _:genid2959 . _:genid2959 "Waters LC-system nanoACQUITY UPLC with HDX Technology."^^ . _:genid2959 "PSI:MS"^^ . . . "Waters LC-system TRIZAIC UPLC nanoTile."^^ . "MS"^^ . "MS:1001769"^^ . "TRIZAIC UPLC nanoTile"^^ . _:genid2960 . _:genid2960 . _:genid2960 . _:genid2960 "Waters LC-system TRIZAIC UPLC nanoTile."^^ . _:genid2960 "PSI:MS"^^ . . . "Waters oa-ToF based GCT Premier."^^ . "MS"^^ . "MS:1001770"^^ . "GCT Premier"^^ . _:genid2961 . _:genid2961 . _:genid2961 . _:genid2961 "Waters oa-ToF based GCT Premier."^^ . _:genid2961 "PSI:MS"^^ . . . "Waters oa-ToF based MALDI Synapt G2 HDMS."^^ . "MS"^^ . "MS:1001771"^^ . "MALDI Synapt G2 HDMS"^^ . _:genid2962 . _:genid2962 . _:genid2962 . _:genid2962 "Waters oa-ToF based MALDI Synapt G2 HDMS."^^ . _:genid2962 "PSI:MS"^^ . . . "Waters oa-ToF based MALDI Synapt G2 MS."^^ . "MS"^^ . "MS:1001772"^^ . "MALDI Synapt G2 MS"^^ . _:genid2963 . _:genid2963 . _:genid2963 . _:genid2963 "Waters oa-ToF based MALDI Synapt G2 MS."^^ . _:genid2963 "PSI:MS"^^ . . . "Waters oa-ToF based MALDI Synapt G2 MS."^^ . "MS"^^ . "MS:1001773"^^ . "MALDI Synapt G2-S HDMS"^^ . _:genid2964 . _:genid2964 . _:genid2964 . _:genid2964 "Waters oa-ToF based MALDI Synapt G2 MS."^^ . _:genid2964 "PSI:MS"^^ . . . "Waters oa-ToF based MALDI Synapt G2-S MS."^^ . "MS"^^ . "MS:1001774"^^ . "MALDI Synapt G2-S MS"^^ . _:genid2965 . _:genid2965 . _:genid2965 . _:genid2965 "Waters oa-ToF based MALDI Synapt G2-S MS."^^ . _:genid2965 "PSI:MS"^^ . . . "Waters oa-ToF based MALDI Synapt HDMS."^^ . "MS"^^ . "MS:1001775"^^ . "MALDI Synapt HDMS"^^ . _:genid2966 . _:genid2966 . _:genid2966 . _:genid2966 "Waters oa-ToF based MALDI Synapt HDMS."^^ . _:genid2966 "PSI:MS"^^ . . . "Waters oa-ToF based MALDI Synapt MS."^^ . "MS"^^ . "MS:1001776"^^ . "MALDI Synapt MS"^^ . _:genid2967 . _:genid2967 . _:genid2967 . _:genid2967 "Waters oa-ToF based MALDI Synapt MS."^^ . _:genid2967 "PSI:MS"^^ . . . "Waters oa-ToF based Synapt G2 HDMS."^^ . "MS"^^ . "MS:1001777"^^ . "Synapt G2 HDMS"^^ . _:genid2968 . _:genid2968 . _:genid2968 . _:genid2968 "Waters oa-ToF based Synapt G2 HDMS."^^ . _:genid2968 "PSI:MS"^^ . . . "Waters oa-ToF based Synapt G2 MS."^^ . "MS"^^ . "MS:1001778"^^ . "Synapt G2 MS"^^ . _:genid2969 . _:genid2969 . _:genid2969 . _:genid2969 "Waters oa-ToF based Synapt G2 MS."^^ . _:genid2969 "PSI:MS"^^ . . . "Waters oa-ToF based Synapt G2-S HDMS."^^ . "MS"^^ . "MS:1001779"^^ . "Synapt G2-S HDMS"^^ . _:genid2970 . _:genid2970 . _:genid2970 . _:genid2970 "Waters oa-ToF based Synapt G2-S HDMS."^^ . _:genid2970 "PSI:MS"^^ . . . "Waters oa-ToF based Synapt G2-S MS."^^ . "MS"^^ . "MS:1001780"^^ . "Synapt G2-S MS"^^ . _:genid2971 . _:genid2971 . _:genid2971 . _:genid2971 "Waters oa-ToF based Synapt G2-S MS."^^ . _:genid2971 "PSI:MS"^^ . . . "Waters oa-ToF based Synapt HDMS."^^ . "MS"^^ . "MS:1001781"^^ . "Synapt HDMS"^^ . _:genid2972 . _:genid2972 . _:genid2972 . _:genid2972 "Waters oa-ToF based Synapt HDMS."^^ . _:genid2972 "PSI:MS"^^ . . . "Waters oa-ToF based Synapt MS."^^ . "MS"^^ . "MS:1001782"^^ . "Synapt MS"^^ . _:genid2973 . _:genid2973 . _:genid2973 . _:genid2973 "Waters oa-ToF based Synapt MS."^^ . _:genid2973 "PSI:MS"^^ . . . "Waters oa-ToF based Xevo G2 Q-Tof."^^ . "MS"^^ . "MS:1001783"^^ . "Xevo G2 Q-Tof"^^ . _:genid2974 . _:genid2974 . _:genid2974 . _:genid2974 "Waters oa-ToF based Xevo G2 Q-Tof."^^ . _:genid2974 "PSI:MS"^^ . . . "Waters oa-ToF based Xevo G2 Tof."^^ . "MS"^^ . "MS:1001784"^^ . "Xevo G2 Tof"^^ . _:genid2975 . _:genid2975 . _:genid2975 . _:genid2975 "Waters oa-ToF based Xevo G2 Tof."^^ . _:genid2975 "PSI:MS"^^ . . . "Waters oa-ToF based Xevo Q-Tof."^^ . "MS"^^ . "MS:1001785"^^ . "Xevo Q-Tof"^^ . _:genid2976 . _:genid2976 . _:genid2976 . _:genid2976 "Waters oa-ToF based Xevo Q-Tof."^^ . _:genid2976 "PSI:MS"^^ . . . "Waters quadrupole based 3100."^^ . "MS"^^ . "MS:1001786"^^ . "3100"^^ . _:genid2977 . _:genid2977 . _:genid2977 . _:genid2977 "Waters quadrupole based 3100."^^ . _:genid2977 "PSI:MS"^^ . . . "Waters quadrupole based Acquity SQD."^^ . "MS"^^ . "MS:1001787"^^ . "Acquity SQD"^^ . _:genid2978 . _:genid2978 . _:genid2978 . _:genid2978 "Waters quadrupole based Acquity SQD."^^ . _:genid2978 "PSI:MS"^^ . . . "Waters quadrupole based Acquity TQD."^^ . "MS"^^ . "MS:1001788"^^ . "Acquity TQD"^^ . _:genid2979 . _:genid2979 . _:genid2979 . _:genid2979 "Waters quadrupole based Acquity TQD."^^ . _:genid2979 "PSI:MS"^^ . . . "Waters (triple) quadrupole based Quattro micro GC."^^ . "MS"^^ . "MS:1001789"^^ . "Quattro micro GC"^^ . _:genid2980 . _:genid2980 . _:genid2980 . _:genid2980 "Waters (triple) quadrupole based Quattro micro GC."^^ . _:genid2980 "PSI:MS"^^ . . . "Waters quadrupole based Xevo TQ MS."^^ . "MS"^^ . "MS:1001790"^^ . "Xevo TQ MS"^^ . _:genid2981 . _:genid2981 . _:genid2981 . _:genid2981 "Waters quadrupole based Xevo TQ MS."^^ . _:genid2981 "PSI:MS"^^ . . . "Waters quadrupole based Xevo TQD."^^ . "MS"^^ . "MS:1001791"^^ . "Xevo TQD"^^ . _:genid2982 . _:genid2982 . _:genid2982 . _:genid2982 "Waters quadrupole based Xevo TQD."^^ . _:genid2982 "PSI:MS"^^ . . . "Waters quadrupole based Xevo TQ-S."^^ . "MS"^^ . "MS:1001792"^^ . "Xevo TQ-S"^^ . _:genid2983 . _:genid2983 . _:genid2983 . _:genid2983 "Waters quadrupole based Xevo TQ-S."^^ . _:genid2983 "PSI:MS"^^ . . . _:genid2984 . _:genid2984 . _:genid2984 . _:genid2984 . "NCBI TaxID taxonomy ID to prefer when two or more proteins match the same set of peptides or when protein entry in database represents multiple sequences."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001793"^^ . "Mascot:PreferredTaxonomy"^^ . _:genid2985 . _:genid2985 . _:genid2985 . _:genid2985 "NCBI TaxID taxonomy ID to prefer when two or more proteins match the same set of peptides or when protein entry in database represents multiple sequences."^^ . _:genid2985 "PSI:MS"^^ . _:genid2986 . _:genid2986 . _:genid2986 . _:genid2986 "value-type:xsd:string"^^ . _:genid2986 "The allowed value-type for this CV term."^^ . . . . . "Waters Empower software for liquid chromatography and mass spectrometry acquisition."^^ . "MS"^^ . "MS:1001795"^^ . "Empower"^^ . _:genid2987 . _:genid2987 . _:genid2987 . _:genid2987 "Waters Empower software for liquid chromatography and mass spectrometry acquisition."^^ . _:genid2987 "PSI:MS"^^ . . . . . "Waters UNIFY software for liquid chromatography and mass spectrometry acquisition."^^ . "MS"^^ . "MS:1001796"^^ . "UNIFY"^^ . _:genid2988 . _:genid2988 . _:genid2988 . _:genid2988 "Waters UNIFY software for liquid chromatography and mass spectrometry acquisition."^^ . _:genid2988 "PSI:MS"^^ . . "OBSOLETE An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide."^^ . "TWIMS"^^ . "MS"^^ . "MS:1001797"^^ . "This child of the former purgatory term ion mobility spectrometry was made obsolete."^^ . "travelling wave ion mobility mass spectrometer"^^ . "true"^^ . _:genid2989 . _:genid2989 . _:genid2989 . _:genid2989 "OBSOLETE An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide."^^ . _:genid2989 "PSI:MS"^^ . . . "LECO software for data acquisition and analysis."^^ . "MS"^^ . "MS:1001798"^^ . "LECO software"^^ . _:genid2990 . _:genid2990 . _:genid2990 . _:genid2990 "LECO software for data acquisition and analysis."^^ . _:genid2990 "PSI:MS"^^ . . . . . . "Software for acquisition, processing and analysis of data for LECO instruments."^^ . "MS"^^ . "MS:1001799"^^ . "ChromaTOF software"^^ . _:genid2991 . _:genid2991 . _:genid2991 . _:genid2991 "Software for acquisition, processing and analysis of data for LECO instruments."^^ . _:genid2991 "PSI:MS"^^ . . . "LECO instrument model."^^ . "MS"^^ . "MS:1001800"^^ . "LECO instrument model"^^ . _:genid2992 . _:genid2992 . _:genid2992 . _:genid2992 "LECO instrument model."^^ . _:genid2992 "PSI:MS"^^ . . . "LECO high resolution time-of-flight GC mass spectrometer."^^ . "MS"^^ . "MS:1001801"^^ . "Pegasus HRT"^^ . _:genid2993 . _:genid2993 . _:genid2993 . _:genid2993 "LECO high resolution time-of-flight GC mass spectrometer."^^ . _:genid2993 "PSI:MS"^^ . . . "LECO high resolution time-of-flight LC mass spectrometer."^^ . "MS"^^ . "MS:1001802"^^ . "Citius HRT"^^ . _:genid2994 . _:genid2994 . _:genid2994 . _:genid2994 "LECO high resolution time-of-flight LC mass spectrometer."^^ . _:genid2994 "PSI:MS"^^ . . . "LECO GC time-of-flight mass spectrometer."^^ . "MS"^^ . "MS:1001803"^^ . "Pegasus"^^ . _:genid2995 . _:genid2995 . _:genid2995 . _:genid2995 "LECO GC time-of-flight mass spectrometer."^^ . _:genid2995 "PSI:MS"^^ . . . "LECO bench-top GC time-of-flight mass spectrometer."^^ . "MS"^^ . "MS:1001804"^^ . "TruTOF"^^ . _:genid2996 . _:genid2996 . _:genid2996 . _:genid2996 "LECO bench-top GC time-of-flight mass spectrometer."^^ . _:genid2996 "PSI:MS"^^ . . . "The data type of the value reported in a QuantLayer."^^ . "MS"^^ . "MS:1001805"^^ . "quantification datatype"^^ . _:genid2997 . _:genid2997 . _:genid2997 . _:genid2997 "The data type of the value reported in a QuantLayer."^^ . _:genid2997 "PSI:MS"^^ . . . "Attributes describing the details of an object relevant for reporting quantification workflows or values."^^ . "MS"^^ . "MS:1001806"^^ . "quantification object attribute"^^ . _:genid2998 . _:genid2998 . _:genid2998 . _:genid2998 "Attributes describing the details of an object relevant for reporting quantification workflows or values."^^ . _:genid2998 "PSI:MS"^^ . . . "Attribute describing a study variable."^^ . "MS"^^ . "MS:1001807"^^ . "study variable attribute"^^ . _:genid2999 . _:genid2999 . _:genid2999 . _:genid2999 "Attribute describing a study variable."^^ . _:genid2999 "PSI:MS"^^ . . . _:genid3000 . _:genid3000 . _:genid3000 . _:genid3000 . "The study variable is 'technical replicate'. The string value denotes the category of technical replicate, e.g. 'run generated from same sample'."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001808"^^ . "technical replicate"^^ . _:genid3001 . _:genid3001 . _:genid3001 . _:genid3001 "The study variable is 'technical replicate'. The string value denotes the category of technical replicate, e.g. 'run generated from same sample'."^^ . _:genid3001 "PSI:MS"^^ . _:genid3002 . _:genid3002 . _:genid3002 . _:genid3002 "value-type:xsd:string"^^ . _:genid3002 "The allowed value-type for this CV term."^^ . . . "The study variable is 'biological replicate'. This means, the run was generated from another individual or sample."^^ . "MS"^^ . "MS:1001809"^^ . "biological replicate"^^ . _:genid3003 . _:genid3003 . _:genid3003 . _:genid3003 "The study variable is 'biological replicate'. This means, the run was generated from another individual or sample."^^ . _:genid3003 "PSI:MS"^^ . . . "The experimental condition is 'case' in contrast to 'control'."^^ . "MS"^^ . "MS:1001810"^^ . "experimental condition 'case'"^^ . _:genid3004 . _:genid3004 . _:genid3004 . _:genid3004 "The experimental condition is 'case' in contrast to 'control'."^^ . _:genid3004 "PSI:MS"^^ . . . "The experimental condition is 'control' in contrast to 'case'."^^ . "MS"^^ . "MS:1001811"^^ . "experimental condition 'control'"^^ . _:genid3005 . _:genid3005 . _:genid3005 . _:genid3005 "The experimental condition is 'control' in contrast to 'case'."^^ . _:genid3005 "PSI:MS"^^ . . . "The experimental condition is 'disease' in contrast to 'healthy'."^^ . "MS"^^ . "MS:1001812"^^ . "experimental condition 'disease'"^^ . _:genid3006 . _:genid3006 . _:genid3006 . _:genid3006 "The experimental condition is 'disease' in contrast to 'healthy'."^^ . _:genid3006 "PSI:MS"^^ . . . "The experimental condition is 'healthy' in contrast to 'disease'."^^ . "MS"^^ . "MS:1001813"^^ . "experimental condition 'healthy'"^^ . _:genid3007 . _:genid3007 . _:genid3007 . _:genid3007 "The experimental condition is 'healthy' in contrast to 'disease'."^^ . _:genid3007 "PSI:MS"^^ . . . _:genid3008 . _:genid3008 . _:genid3008 . _:genid3008 . "The experimental condition is given in the value of this term."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001814"^^ . "generic experimental condition"^^ . _:genid3009 . _:genid3009 . _:genid3009 . _:genid3009 "The experimental condition is given in the value of this term."^^ . _:genid3009 "PSI:MS"^^ . _:genid3010 . _:genid3010 . _:genid3010 . _:genid3010 "value-type:xsd:string"^^ . _:genid3010 "The allowed value-type for this CV term."^^ . . . _:genid3011 . _:genid3011 . _:genid3011 . _:genid3011 . "The experimental design followed a time series design. The time point of this run is given in the value of this term."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001815"^^ . "time series, time point X"^^ . _:genid3012 . _:genid3012 . _:genid3012 . _:genid3012 "The experimental design followed a time series design. The time point of this run is given in the value of this term."^^ . _:genid3012 "PSI:MS"^^ . _:genid3013 . _:genid3013 . _:genid3013 . _:genid3013 "value-type:xsd:int"^^ . _:genid3013 "The allowed value-type for this CV term."^^ . . . _:genid3014 . _:genid3014 . _:genid3014 . _:genid3014 . "The experimental design followed a dilution series design. The concentration of this run is given in the value of this term."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001816"^^ . "dilution series, concentration X"^^ . _:genid3015 . _:genid3015 . _:genid3015 . _:genid3015 "The experimental design followed a dilution series design. The concentration of this run is given in the value of this term."^^ . _:genid3015 "PSI:MS"^^ . _:genid3016 . _:genid3016 . _:genid3016 . _:genid3016 "value-type:xsd:double"^^ . _:genid3016 "The allowed value-type for this CV term."^^ . . . "Attribute describing a raw file."^^ . "MS"^^ . "MS:1001817"^^ . "raw file attribute"^^ . _:genid3017 . _:genid3017 . _:genid3017 . _:genid3017 "Attribute describing a raw file."^^ . _:genid3017 "PSI:MS"^^ . . . "The raw file contains the run of one sample (e.g. spectral counting, LC-MS label-free)."^^ . "MS"^^ . "MS:1001818"^^ . "one sample run"^^ . _:genid3018 . _:genid3018 . _:genid3018 . _:genid3018 "The raw file contains the run of one sample (e.g. spectral counting, LC-MS label-free)."^^ . _:genid3018 "PSI:MS"^^ . . . "The raw file contains the run of two samples (e.g. SILAC, metabolic labelling)."^^ . "MS"^^ . "MS:1001819"^^ . "two sample run"^^ . _:genid3019 . _:genid3019 . _:genid3019 . _:genid3019 "The raw file contains the run of two samples (e.g. SILAC, metabolic labelling)."^^ . _:genid3019 "PSI:MS"^^ . . . "The raw file contains the run of three samples (e.g. 3-plex SILAC)."^^ . "MS"^^ . "MS:1001820"^^ . "three sample run"^^ . _:genid3020 . _:genid3020 . _:genid3020 . _:genid3020 "The raw file contains the run of three samples (e.g. 3-plex SILAC)."^^ . _:genid3020 "PSI:MS"^^ . . . "The raw file contains the run of four samples (e.g. 4-plex iTraq)."^^ . "MS"^^ . "MS:1001821"^^ . "four sample run"^^ . _:genid3021 . _:genid3021 . _:genid3021 . _:genid3021 "The raw file contains the run of four samples (e.g. 4-plex iTraq)."^^ . _:genid3021 "PSI:MS"^^ . . . "The raw file contains the run of eight samples (e.g. 8-plex iTraq)."^^ . "MS"^^ . "MS:1001822"^^ . "eight sample run"^^ . _:genid3022 . _:genid3022 . _:genid3022 . _:genid3022 "The raw file contains the run of eight samples (e.g. 8-plex iTraq)."^^ . _:genid3022 "PSI:MS"^^ . . . "Attribute describing, how raw files build a raw file group."^^ . "MS"^^ . "MS:1001823"^^ . "raw files group attribute"^^ . _:genid3023 . _:genid3023 . _:genid3023 . _:genid3023 "Attribute describing, how raw files build a raw file group."^^ . _:genid3023 "PSI:MS"^^ . . . "Attribute describing, how raw files build a raw file group."^^ . "MS"^^ . "MS:1001824"^^ . "merge of runs of 1D gel bands"^^ . _:genid3024 . _:genid3024 . _:genid3024 . _:genid3024 "Attribute describing, how raw files build a raw file group."^^ . _:genid3024 "PSI:MS"^^ . . . "Attribute describing a feature list."^^ . "MS"^^ . "MS:1001825"^^ . "feature list attribute"^^ . _:genid3025 . _:genid3025 . _:genid3025 . _:genid3025 "Attribute describing a feature list."^^ . _:genid3025 "PSI:MS"^^ . . . "The mass trace of the features of this feature list specifies rectangles. Each mass trace has the syntax (RT_start,MZ_start,RT_end,MZ_end), i.e. opposite corners are given."^^ . "MS"^^ . "MS:1001826"^^ . "mass trace reporting: rectangles"^^ . _:genid3026 . _:genid3026 . _:genid3026 . _:genid3026 "The mass trace of the features of this feature list specifies rectangles. Each mass trace has the syntax (RT_start,MZ_start,RT_end,MZ_end), i.e. opposite corners are given."^^ . _:genid3026 "PSI:MS"^^ . . . "The mass trace of the features of this feature list specifies polygons. Each mass trace has the syntax (RT_1, MZ_1, RT_2, MZ_2, ... , RT_i, MZ_i, ... , RT_n, MZ_n), where the line (RT_n, MZ_n)->(RT_1, MZ_1) is implicit."^^ . "MS"^^ . "MS:1001827"^^ . "mass trace reporting: polygons"^^ . _:genid3027 . _:genid3027 . _:genid3027 . _:genid3027 "The mass trace of the features of this feature list specifies polygons. Each mass trace has the syntax (RT_1, MZ_1, RT_2, MZ_2, ... , RT_i, MZ_i, ... , RT_n, MZ_n), where the line (RT_n, MZ_n)->(RT_1, MZ_1) is implicit."^^ . _:genid3027 "PSI:MS"^^ . . . "Attribute describing a feature."^^ . "MS"^^ . "MS:1001828"^^ . "feature attribute"^^ . _:genid3028 . _:genid3028 . _:genid3028 . _:genid3028 "Attribute describing a feature."^^ . _:genid3028 "PSI:MS"^^ . . . _:genid3029 . _:genid3029 . _:genid3029 . _:genid3029 . "Identifier for an SRM transition in an external document describing additional information about the transition."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001829"^^ . "SRM transition ID"^^ . _:genid3030 . _:genid3030 . _:genid3030 . _:genid3030 "Identifier for an SRM transition in an external document describing additional information about the transition."^^ . _:genid3030 "PSI:MS"^^ . _:genid3031 . _:genid3031 . _:genid3031 . _:genid3031 "value-type:xsd:string"^^ . _:genid3031 "The allowed value-type for this CV term."^^ . . . "Software from Nonlinear Dynamics for LC-MS label-free workflow."^^ . "MS"^^ . "MS:1001830"^^ . "Progenesis LC-MS"^^ . _:genid3032 . _:genid3032 . _:genid3032 . _:genid3032 "Software from Nonlinear Dynamics for LC-MS label-free workflow."^^ . _:genid3032 "PSI:MS"^^ . . . . "Software for SILAC workflow."^^ . "MS"^^ . "MS:1001831"^^ . "SILACAnalyzer"^^ . _:genid3033 . _:genid3033 . _:genid3033 . _:genid3033 "Software for SILAC workflow."^^ . _:genid3033 "PSI:MS"^^ . . . _:genid3034 . _:genid3034 . _:genid3034 . _:genid3034 . "Quantitation software comment or any customizations to the default setup of the software."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001832"^^ . "quantitation software comment or customizations"^^ . _:genid3035 . _:genid3035 . _:genid3035 . _:genid3035 "Quantitation software comment or any customizations to the default setup of the software."^^ . _:genid3035 "PSI:PI"^^ . _:genid3036 . _:genid3036 . _:genid3036 . _:genid3036 "value-type:xsd:string"^^ . _:genid3036 "The allowed value-type for this CV term."^^ . . . "The overall workflow of this quantitation report."^^ . "MS"^^ . "MS:1001833"^^ . "quantitation analysis summary"^^ . _:genid3037 . _:genid3037 . _:genid3037 . _:genid3037 "The overall workflow of this quantitation report."^^ . _:genid3037 "PSI:PI"^^ . . . "LC-MS label-free workflow (RT m/z map)."^^ . "MS"^^ . "MS:1001834"^^ . "LC-MS label-free quantitation analysis"^^ . _:genid3038 . _:genid3038 . _:genid3038 . _:genid3038 "LC-MS label-free workflow (RT m/z map)."^^ . _:genid3038 "PSI:PI"^^ . . . "SILAC workflow (heavy, light, and sometimes medium peak)."^^ . "MS"^^ . "MS:1001835"^^ . "SILAC quantitation analysis"^^ . _:genid3039 . _:genid3039 . _:genid3039 . _:genid3039 "SILAC workflow (heavy, light, and sometimes medium peak)."^^ . _:genid3039 "PSI:PI"^^ . . . "Spectral counting workflow (number of identified MS2 spectra as approximation of peptide / protein quant)."^^ . "MS"^^ . "MS:1001836"^^ . "spectral counting quantitation analysis"^^ . _:genid3040 . _:genid3040 . _:genid3040 . _:genid3040 "Spectral counting workflow (number of identified MS2 spectra as approximation of peptide / protein quant)."^^ . _:genid3040 "PSI:PI"^^ . . . "Quantification analysis using the SCIEX amine-reactive isobaric tags for relative and absolute quantification (iTRAQ) labelling workflow, wherein 2-8 reporter ions are measured in MS2 spectra near in the 114-121 m/z range."^^ . "MS"^^ . "MS:1001837"^^ . "iTRAQ quantitation analysis"^^ . _:genid3041 . _:genid3041 . _:genid3041 . _:genid3041 "Quantification analysis using the SCIEX amine-reactive isobaric tags for relative and absolute quantification (iTRAQ) labelling workflow, wherein 2-8 reporter ions are measured in MS2 spectra near in the 114-121 m/z range."^^ . _:genid3041 "PMID:15385600"^^ . _:genid3041 "PSI:PI"^^ . . . "Selected Reaction Monitoring workflow (XIC quantitation of precursor / fragment mass pair)."^^ . "MS"^^ . "MS:1001838"^^ . "SRM quantitation analysis"^^ . _:genid3042 . _:genid3042 . _:genid3042 . _:genid3042 "Selected Reaction Monitoring workflow (XIC quantitation of precursor / fragment mass pair)."^^ . _:genid3042 "PSI:PI"^^ . . . "Metabolic labeling workflow (heavy and light versions of peptides, depending on number of nitrogens)."^^ . "MS"^^ . "MS:1001839"^^ . "metabolic labeling 14N / 15N quantitation analysis"^^ . _:genid3043 . _:genid3043 . _:genid3043 . _:genid3043 "Metabolic labeling workflow (heavy and light versions of peptides, depending on number of nitrogens)."^^ . _:genid3043 "PSI:PI"^^ . . . _:genid3044 . _:genid3044 . _:genid3044 . _:genid3044 . "Maximum peak intensity of the LC-MS feature."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001840"^^ . "LC-MS feature intensity"^^ . _:genid3045 . _:genid3045 . _:genid3045 . _:genid3045 "Maximum peak intensity of the LC-MS feature."^^ . _:genid3045 "PSI:PI"^^ . _:genid3046 . _:genid3046 . _:genid3046 . _:genid3046 "value-type:xsd:double"^^ . _:genid3046 "The allowed value-type for this CV term."^^ . . . _:genid3047 . _:genid3047 . _:genid3047 . _:genid3047 . "Real (intensity times area) volume of the LC-MS feature."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001841"^^ . "LC-MS feature volume"^^ . _:genid3048 . _:genid3048 . _:genid3048 . _:genid3048 "Real (intensity times area) volume of the LC-MS feature."^^ . _:genid3048 "PSI:PI"^^ . _:genid3049 . _:genid3049 . _:genid3049 . _:genid3049 "value-type:xsd:double"^^ . _:genid3049 "The allowed value-type for this CV term."^^ . . . _:genid3050 . _:genid3050 . _:genid3050 . _:genid3050 . "The number of MS2 spectra identified for a raw peptide sequence without PTMs and charge state in spectral counting."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001842"^^ . "sequence-level spectral count"^^ . _:genid3051 . _:genid3051 . _:genid3051 . _:genid3051 "The number of MS2 spectra identified for a raw peptide sequence without PTMs and charge state in spectral counting."^^ . _:genid3051 "PSI:PI"^^ . _:genid3052 . _:genid3052 . _:genid3052 . _:genid3052 "value-type:xsd:int"^^ . _:genid3052 "The allowed value-type for this CV term."^^ . . . _:genid3053 . _:genid3053 . _:genid3053 . _:genid3053 . "Maximum intensity of MS1 feature."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001843"^^ . "MS1 feature maximum intensity"^^ . _:genid3054 . _:genid3054 . _:genid3054 . _:genid3054 "Maximum intensity of MS1 feature."^^ . _:genid3054 "PSI:PI"^^ . _:genid3055 . _:genid3055 . _:genid3055 . _:genid3055 "value-type:xsd:double"^^ . _:genid3055 "The allowed value-type for this CV term."^^ . . . _:genid3056 . _:genid3056 . _:genid3056 . _:genid3056 . "Area of MS1 feature."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001844"^^ . "MS1 feature area"^^ . _:genid3057 . _:genid3057 . _:genid3057 . _:genid3057 "Area of MS1 feature."^^ . _:genid3057 "PSI:PI"^^ . _:genid3058 . _:genid3058 . _:genid3058 . _:genid3058 "value-type:xsd:double"^^ . _:genid3058 "The allowed value-type for this CV term."^^ . . . _:genid3059 . _:genid3059 . _:genid3059 . _:genid3059 . "OBSOLETE Area of MS1 peak (e.g. SILAC, 15N)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001845"^^ . "This term was made obsolete because it was a duplication of MS:1001844."^^ . "peak area"^^ . "true"^^ . _:genid3060 . _:genid3060 . _:genid3060 . _:genid3060 "OBSOLETE Area of MS1 peak (e.g. SILAC, 15N)."^^ . _:genid3060 "PSI:PI"^^ . _:genid3061 . _:genid3061 . _:genid3061 . _:genid3061 "value-type:xsd:double"^^ . _:genid3061 "The allowed value-type for this CV term."^^ . . . _:genid3062 . _:genid3062 . _:genid3062 . _:genid3062 . "Area of all peaks belonging to the isotopic pattern of light or heavy peak (e.g. 15N)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001846"^^ . "isotopic pattern area"^^ . _:genid3063 . _:genid3063 . _:genid3063 . _:genid3063 "Area of all peaks belonging to the isotopic pattern of light or heavy peak (e.g. 15N)."^^ . _:genid3063 "PSI:PI"^^ . _:genid3064 . _:genid3064 . _:genid3064 . _:genid3064 "value-type:xsd:double"^^ . _:genid3064 "The allowed value-type for this CV term."^^ . . . _:genid3065 . _:genid3065 . _:genid3065 . _:genid3065 . "Intensity of MS2 reporter ion (e.g. iTraq)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001847"^^ . "reporter ion intensity"^^ . _:genid3066 . _:genid3066 . _:genid3066 . _:genid3066 "Intensity of MS2 reporter ion (e.g. iTraq)."^^ . _:genid3066 "PSI:PI"^^ . _:genid3067 . _:genid3067 . _:genid3067 . _:genid3067 "value-type:xsd:double"^^ . _:genid3067 "The allowed value-type for this CV term."^^ . . . "Simple ratio of two values (enumerator and denominator)."^^ . "MS"^^ . "MS:1001848"^^ . "simple ratio of two values"^^ . _:genid3068 . _:genid3068 . _:genid3068 . _:genid3068 "Simple ratio of two values (enumerator and denominator)."^^ . _:genid3068 "PSI:PI"^^ . . . _:genid3069 . _:genid3069 . _:genid3069 . _:genid3069 . "OBSOLETE Peptide quantification value calculated as sum of MatchedFeature quantification values."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001849"^^ . "This term was made obsolete because the concept MatchedFeature was dropped."^^ . "sum of MatchedFeature values"^^ . "true"^^ . _:genid3070 . _:genid3070 . _:genid3070 . _:genid3070 "OBSOLETE Peptide quantification value calculated as sum of MatchedFeature quantification values."^^ . _:genid3070 "PSI:PI"^^ . _:genid3071 . _:genid3071 . _:genid3071 . _:genid3071 "value-type:xsd:double"^^ . _:genid3071 "The allowed value-type for this CV term."^^ . . . _:genid3072 . _:genid3072 . _:genid3072 . _:genid3072 . "Normalized peptide value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001850"^^ . "normalized peptide value"^^ . _:genid3073 . _:genid3073 . _:genid3073 . _:genid3073 "Normalized peptide value."^^ . _:genid3073 "PSI:PI"^^ . _:genid3074 . _:genid3074 . _:genid3074 . _:genid3074 "value-type:xsd:double"^^ . _:genid3074 "The allowed value-type for this CV term."^^ . . . _:genid3075 . _:genid3075 . _:genid3075 . _:genid3075 . "Protein quantification value calculated as sum of peptide values."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001851"^^ . "protein value: sum of peptide values"^^ . _:genid3076 . _:genid3076 . _:genid3076 . _:genid3076 "Protein quantification value calculated as sum of peptide values."^^ . _:genid3076 "PSI:PI"^^ . _:genid3077 . _:genid3077 . _:genid3077 . _:genid3077 "value-type:xsd:double"^^ . _:genid3077 "The allowed value-type for this CV term."^^ . . . _:genid3078 . _:genid3078 . _:genid3078 . _:genid3078 . "Normalized protein value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001852"^^ . "normalized protein value"^^ . _:genid3079 . _:genid3079 . _:genid3079 . _:genid3079 "Normalized protein value."^^ . _:genid3079 "PSI:PI"^^ . _:genid3080 . _:genid3080 . _:genid3080 . _:genid3080 "value-type:xsd:double"^^ . _:genid3080 "The allowed value-type for this CV term."^^ . . . _:genid3081 . _:genid3081 . _:genid3081 . _:genid3081 . "Global datatype: Maximum of all pair-wise fold changes of group means (e.g. Progenesis)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001853"^^ . "max fold change"^^ . _:genid3082 . _:genid3082 . _:genid3082 . _:genid3082 "Global datatype: Maximum of all pair-wise fold changes of group means (e.g. Progenesis)."^^ . _:genid3082 "PSI:PI"^^ . _:genid3083 . _:genid3083 . _:genid3083 . _:genid3083 "value-type:xsd:double"^^ . _:genid3083 "The allowed value-type for this CV term."^^ . . . _:genid3084 . _:genid3084 . _:genid3084 . _:genid3084 . "Global datatype: p-value of ANOVA of group means (e.g. Progenesis)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001854"^^ . "ANOVA p-value"^^ . _:genid3085 . _:genid3085 . _:genid3085 . _:genid3085 "Global datatype: p-value of ANOVA of group means (e.g. Progenesis)."^^ . _:genid3085 "PSI:PI"^^ . _:genid3086 . _:genid3086 . _:genid3086 . _:genid3086 "value-type:xsd:double"^^ . _:genid3086 "The allowed value-type for this CV term."^^ . . . _:genid3087 . _:genid3087 . _:genid3087 . _:genid3087 . "P-value of t-Test of two groups."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001855"^^ . "t-test p-value"^^ . _:genid3088 . _:genid3088 . _:genid3088 . _:genid3088 "P-value of t-Test of two groups."^^ . _:genid3088 "PSI:PI"^^ . _:genid3089 . _:genid3089 . _:genid3089 . _:genid3089 "value-type:xsd:double"^^ . _:genid3089 "The allowed value-type for this CV term."^^ . . . _:genid3090 . _:genid3090 . _:genid3090 . _:genid3090 . "Intensity (or area) of MS2 reporter ion (e.g. iTraq)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001856"^^ . "reporter ion raw value"^^ . _:genid3091 . _:genid3091 . _:genid3091 . _:genid3091 "Intensity (or area) of MS2 reporter ion (e.g. iTraq)."^^ . _:genid3091 "PSI:PI"^^ . _:genid3092 . _:genid3092 . _:genid3092 . _:genid3092 "value-type:xsd:double"^^ . _:genid3092 "The allowed value-type for this CV term."^^ . . . _:genid3093 . _:genid3093 . _:genid3093 . _:genid3093 . "Normalized value of MS2 reporter ion (e.g. iTraq)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001857"^^ . "reporter ion normalized value"^^ . _:genid3094 . _:genid3094 . _:genid3094 . _:genid3094 "Normalized value of MS2 reporter ion (e.g. iTraq)."^^ . _:genid3094 "PSI:PI"^^ . _:genid3095 . _:genid3095 . _:genid3095 . _:genid3095 "value-type:xsd:double"^^ . _:genid3095 "The allowed value-type for this CV term."^^ . . . _:genid3096 . _:genid3096 . _:genid3096 . _:genid3096 . "Area of the extracted ion chromatogram (e.g. of a transition in SRM)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001858"^^ . "XIC area"^^ . _:genid3097 . _:genid3097 . _:genid3097 . _:genid3097 "Area of the extracted ion chromatogram (e.g. of a transition in SRM)."^^ . _:genid3097 "PSI:PI"^^ . _:genid3098 . _:genid3098 . _:genid3098 . _:genid3098 "value-type:xsd:double"^^ . _:genid3098 "The allowed value-type for this CV term."^^ . . . _:genid3099 . _:genid3099 . _:genid3099 . _:genid3099 . "Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001859"^^ . "normalized XIC area"^^ . _:genid3100 . _:genid3100 . _:genid3100 . _:genid3100 "Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM)."^^ . _:genid3100 "PSI:PI"^^ . _:genid3101 . _:genid3101 . _:genid3101 . _:genid3101 "value-type:xsd:double"^^ . _:genid3101 "The allowed value-type for this CV term."^^ . . . _:genid3102 . _:genid3102 . _:genid3102 . _:genid3102 . "Protein quantification value calculated as mean of peptide ratios."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001860"^^ . "protein value: mean of peptide ratios"^^ . _:genid3103 . _:genid3103 . _:genid3103 . _:genid3103 "Protein quantification value calculated as mean of peptide ratios."^^ . _:genid3103 "PSI:PI"^^ . _:genid3104 . _:genid3104 . _:genid3104 . _:genid3104 "value-type:xsd:double"^^ . _:genid3104 "The allowed value-type for this CV term."^^ . . _:genid3105 . _:genid3105 . _:genid3105 . _:genid3105 . "Terms used to describe types of quantification data processing."^^ . "MS"^^ . "MS:1001861"^^ . "quantification data processing"^^ . _:genid3106 . _:genid3106 . _:genid3106 . _:genid3106 "Terms used to describe types of quantification data processing."^^ . _:genid3106 "PSI:MS"^^ . . . "Normalization of protein values to the mean of the sum of all protein PSM counts (e.g. spectral counting)."^^ . "MS"^^ . "MS:1001862"^^ . "normalization to mean of sum of all proteins"^^ . _:genid3107 . _:genid3107 . _:genid3107 . _:genid3107 "Normalization of protein values to the mean of the sum of all protein PSM counts (e.g. spectral counting)."^^ . _:genid3107 "PSI:MS"^^ . . . "Normalization of protein values to approach the same distribution."^^ . "MS"^^ . "MS:1001863"^^ . "quantile normalization, proteins"^^ . _:genid3108 . _:genid3108 . _:genid3108 . _:genid3108 "Normalization of protein values to approach the same distribution."^^ . _:genid3108 "PSI:MS"^^ . . . "Normalization of peptide values to approach the same distribution."^^ . "MS"^^ . "MS:1001864"^^ . "quantile normalization, peptides"^^ . _:genid3109 . _:genid3109 . _:genid3109 . _:genid3109 "Normalization of peptide values to approach the same distribution."^^ . _:genid3109 "PSI:MS"^^ . . . "Automatic RT alignment of Progenesis software."^^ . "MS"^^ . "MS:1001865"^^ . "Progenesis automatic alignment"^^ . _:genid3110 . _:genid3110 . _:genid3110 . _:genid3110 "Automatic RT alignment of Progenesis software."^^ . _:genid3110 "PSI:MS"^^ . . . "RT alignment of Progenesis software using automatic and manual vectors."^^ . "MS"^^ . "MS:1001866"^^ . "Progenesis manual alignment"^^ . _:genid3111 . _:genid3111 . _:genid3111 . _:genid3111 "RT alignment of Progenesis software using automatic and manual vectors."^^ . _:genid3111 "PSI:MS"^^ . . . "Normalization as performed by Progenesis LC-MS."^^ . "MS"^^ . "MS:1001867"^^ . "Progenesis normalization"^^ . _:genid3112 . _:genid3112 . _:genid3112 . _:genid3112 "Normalization as performed by Progenesis LC-MS."^^ . _:genid3112 "PSI:MS"^^ . . . _:genid3113 . _:genid3113 . _:genid3113 . _:genid3113 . _:genid3114 . _:genid3114 . _:genid3114 . _:genid3114 . "Estimation of the q-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs, possibly with different mass modifications, mapping to the same sequence have been collapsed to one entry)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001868"^^ . "distinct peptide-level q-value"^^ . _:genid3115 . _:genid3115 . _:genid3115 . _:genid3115 "Estimation of the q-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs, possibly with different mass modifications, mapping to the same sequence have been collapsed to one entry)."^^ . _:genid3115 "PSI:PI"^^ . _:genid3116 . _:genid3116 . _:genid3116 . _:genid3116 "value-type:xsd:double"^^ . _:genid3116 "The allowed value-type for this CV term."^^ . . . _:genid3117 . _:genid3117 . _:genid3117 . _:genid3117 . _:genid3118 . _:genid3118 . _:genid3118 . _:genid3118 . "Estimation of the q-value for proteins."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001869"^^ . "protein-level q-value"^^ . _:genid3119 . _:genid3119 . _:genid3119 . _:genid3119 "Estimation of the q-value for proteins."^^ . _:genid3119 "PSI:PI"^^ . _:genid3120 . _:genid3120 . _:genid3120 . _:genid3120 "value-type:xsd:double"^^ . _:genid3120 "The allowed value-type for this CV term."^^ . . . _:genid3121 . _:genid3121 . _:genid3121 . _:genid3121 . _:genid3122 . _:genid3122 . _:genid3122 . _:genid3122 . "Estimation of the p-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001870"^^ . "peptide sequence-level p-value"^^ . _:genid3123 . _:genid3123 . _:genid3123 . _:genid3123 "Estimation of the p-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^ . _:genid3123 "PSI:PI"^^ . _:genid3124 . _:genid3124 . _:genid3124 . _:genid3124 "value-type:xsd:double"^^ . _:genid3124 "The allowed value-type for this CV term."^^ . . . _:genid3125 . _:genid3125 . _:genid3125 . _:genid3125 . _:genid3126 . _:genid3126 . _:genid3126 . _:genid3126 . "Estimation of the p-value for proteins."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001871"^^ . "protein-level p-value"^^ . _:genid3127 . _:genid3127 . _:genid3127 . _:genid3127 "Estimation of the p-value for proteins."^^ . _:genid3127 "PSI:PI"^^ . _:genid3128 . _:genid3128 . _:genid3128 . _:genid3128 "value-type:xsd:double"^^ . _:genid3128 "The allowed value-type for this CV term."^^ . . . _:genid3129 . _:genid3129 . _:genid3129 . _:genid3129 . _:genid3130 . _:genid3130 . _:genid3130 . _:genid3130 . "Estimation of the e-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001872"^^ . "peptide sequence-level e-value"^^ . _:genid3131 . _:genid3131 . _:genid3131 . _:genid3131 "Estimation of the e-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^ . _:genid3131 "PSI:PI"^^ . _:genid3132 . _:genid3132 . _:genid3132 . _:genid3132 "value-type:xsd:double"^^ . _:genid3132 "The allowed value-type for this CV term."^^ . . . _:genid3133 . _:genid3133 . _:genid3133 . _:genid3133 . _:genid3134 . _:genid3134 . _:genid3134 . _:genid3134 . "Estimation of the e-value for proteins."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001873"^^ . "protein-level e-value"^^ . _:genid3135 . _:genid3135 . _:genid3135 . _:genid3135 "Estimation of the e-value for proteins."^^ . _:genid3135 "PSI:PI"^^ . _:genid3136 . _:genid3136 . _:genid3136 . _:genid3136 "value-type:xsd:double"^^ . _:genid3136 "The allowed value-type for this CV term."^^ . . . . _:genid3137 . _:genid3137 . _:genid3137 . _:genid3137 . "OBSOLETE A smoothing of the distribution of q-values calculated for PSMs from individual search engines, such that ordering of result quality is maintained and all FDRScore values are guaranteed to have a value > 0."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001874"^^ . "This term was made obsolete because it was split into the more specific terms for PSM-level FDRScore (1002355), distinct peptide-level FDRScore (MS:1002360), protein-level FDRScore (MS:1002365) and protein group-level FDRScore (MS:1002374)."^^ . "FDRScore"^^ . "true"^^ . _:genid3138 . _:genid3138 . _:genid3138 . _:genid3138 "OBSOLETE A smoothing of the distribution of q-values calculated for PSMs from individual search engines, such that ordering of result quality is maintained and all FDRScore values are guaranteed to have a value > 0."^^ . _:genid3138 "PMID:19253293"^^ . _:genid3139 . _:genid3139 . _:genid3139 . _:genid3139 "value-type:xsd:double"^^ . _:genid3139 "The allowed value-type for this CV term."^^ . . . _:genid3140 . _:genid3140 . _:genid3140 . _:genid3140 . "The regular expression describing the sequence motif for a modification."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001875"^^ . "modification motif"^^ . _:genid3141 . _:genid3141 . _:genid3141 . _:genid3141 "The regular expression describing the sequence motif for a modification."^^ . _:genid3141 "PSI:PI"^^ . _:genid3142 . _:genid3142 . _:genid3142 . _:genid3142 "value-type:xsd:string"^^ . _:genid3142 "The allowed value-type for this CV term."^^ . . . "The a priori probability of a modification."^^ . "MS"^^ . "MS:1001876"^^ . "modification probability"^^ . _:genid3143 . _:genid3143 . _:genid3143 . _:genid3143 "The a priori probability of a modification."^^ . _:genid3143 "PSI:PI"^^ . . . . . . "Software for acquisition, processing and analysis of data for LECO instruments."^^ . "MS"^^ . "MS:1001877"^^ . "ChromaTOF HRT software"^^ . _:genid3144 . _:genid3144 . _:genid3144 . _:genid3144 "Software for acquisition, processing and analysis of data for LECO instruments."^^ . _:genid3144 "PSI:MS"^^ . . . "Shimadzu Biotech software for data acquisition, processing, and analysis."^^ . "MS"^^ . "MS:1001878"^^ . "MALDI Solutions Microbial Identification"^^ . _:genid3145 . _:genid3145 . _:genid3145 . _:genid3145 "Shimadzu Biotech software for data acquisition, processing, and analysis."^^ . _:genid3145 "PSI:MS"^^ . . . _:genid3146 . _:genid3146 . _:genid3146 . _:genid3146 . _:genid3147 . _:genid3147 . _:genid3147 . _:genid3147 . "The potential difference between two adjacent interface voltages affecting in-source collision induced dissociation."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001879"^^ . "offset voltage"^^ . _:genid3148 . _:genid3148 . _:genid3148 . _:genid3148 "The potential difference between two adjacent interface voltages affecting in-source collision induced dissociation."^^ . _:genid3148 "PSI:MS"^^ . _:genid3149 . _:genid3149 . _:genid3149 . _:genid3149 "value-type:xsd:float"^^ . _:genid3149 "The allowed value-type for this CV term."^^ . . . "The dissociation of an ion as a result of collisional excitation during ion transfer from an atmospheric pressure ion source and the mass spectrometer vacuum."^^ . "MS"^^ . "MS:1001880"^^ . "in-source collision-induced dissociation"^^ . _:genid3150 . _:genid3150 . _:genid3150 . _:genid3150 "The dissociation of an ion as a result of collisional excitation during ion transfer from an atmospheric pressure ion source and the mass spectrometer vacuum."^^ . _:genid3150 "PSI:MS"^^ . . . "mz5 file format, modelled after mzML."^^ . "MS"^^ . "MS:1001881"^^ . "mz5 format"^^ . _:genid3151 . _:genid3151 . _:genid3151 . _:genid3151 "mz5 file format, modelled after mzML."^^ . _:genid3151 "PSI:MS"^^ . . _:genid3152 . _:genid3152 . _:genid3152 . _:genid3152 . "Attributes of the quality of a transition that affect its selection as appropriate."^^ . "MS"^^ . "MS:1001882"^^ . "transition validation attribute"^^ . _:genid3153 . _:genid3153 . _:genid3153 . _:genid3153 "Attributes of the quality of a transition that affect its selection as appropriate."^^ . _:genid3153 "PSI:MS"^^ . . . _:genid3154 . _:genid3154 . _:genid3154 . _:genid3154 . "Variation of a set of signal measurements calculated as the standard deviation relative to the mean."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001883"^^ . "coefficient of variation"^^ . _:genid3155 . _:genid3155 . _:genid3155 . _:genid3155 "Variation of a set of signal measurements calculated as the standard deviation relative to the mean."^^ . _:genid3155 "PSI:MS"^^ . _:genid3156 . _:genid3156 . _:genid3156 . _:genid3156 "value-type:xsd:float"^^ . _:genid3156 "The allowed value-type for this CV term."^^ . . . _:genid3157 . _:genid3157 . _:genid3157 . _:genid3157 . "Unitless number providing the ratio of the total measured intensity of a signal relative to the estimated noise level for that signal."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001884"^^ . "signal-to-noise ratio"^^ . _:genid3158 . _:genid3158 . _:genid3158 . _:genid3158 "Unitless number providing the ratio of the total measured intensity of a signal relative to the estimated noise level for that signal."^^ . _:genid3158 "PSI:MS"^^ . _:genid3159 . _:genid3159 . _:genid3159 . _:genid3159 "value-type:xsd:float"^^ . _:genid3159 "The allowed value-type for this CV term."^^ . . . . _:genid3160 . _:genid3160 . _:genid3160 . _:genid3160 . "Parameters string passed to a command-line interface software application, omitting the executable name."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001885"^^ . "command-line parameters"^^ . _:genid3161 . _:genid3161 . _:genid3161 . _:genid3161 "Parameters string passed to a command-line interface software application, omitting the executable name."^^ . _:genid3161 "PSI:MS"^^ . _:genid3162 . _:genid3162 . _:genid3162 . _:genid3162 "value-type:xsd:string"^^ . _:genid3162 "The allowed value-type for this CV term."^^ . . . . "Software for data analysis of peptides and proteins."^^ . "MS"^^ . "MS:1001886"^^ . "SQID"^^ . _:genid3163 . _:genid3163 . _:genid3163 . _:genid3163 "Software for data analysis of peptides and proteins."^^ . _:genid3163 "PSI:MS"^^ . . . "The SQID result 'Score'."^^ . "MS"^^ . "MS:1001887"^^ . "SQID:score"^^ . _:genid3164 . _:genid3164 . _:genid3164 . _:genid3164 "The SQID result 'Score'."^^ . _:genid3164 "PSI:PI"^^ . . . "The SQID result 'deltaScore'."^^ . "MS"^^ . "MS:1001888"^^ . "SQID:deltaScore"^^ . _:genid3165 . _:genid3165 . _:genid3165 . _:genid3165 "The SQID result 'deltaScore'."^^ . _:genid3165 "PSI:PI"^^ . . . "The SQID result 'protein score'."^^ . "MS"^^ . "MS:1001889"^^ . "SQID:protein score"^^ . _:genid3166 . _:genid3166 . _:genid3166 . _:genid3166 "The SQID result 'protein score'."^^ . _:genid3166 "PSI:PI"^^ . . . _:genid3167 . _:genid3167 . _:genid3167 . _:genid3167 . "The data type normalised abundance for proteins produced by Progenesis LC-MS."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001890"^^ . "Progenesis:protein normalised abundance"^^ . _:genid3168 . _:genid3168 . _:genid3168 . _:genid3168 "The data type normalised abundance for proteins produced by Progenesis LC-MS."^^ . _:genid3168 "PSI:MS"^^ . _:genid3169 . _:genid3169 . _:genid3169 . _:genid3169 "value-type:xsd:double"^^ . _:genid3169 "The allowed value-type for this CV term."^^ . . . _:genid3170 . _:genid3170 . _:genid3170 . _:genid3170 . "The data type normalised abundance for peptides produced by Progenesis LC-MS."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001891"^^ . "Progenesis:peptide normalised abundance"^^ . _:genid3171 . _:genid3171 . _:genid3171 . _:genid3171 "The data type normalised abundance for peptides produced by Progenesis LC-MS."^^ . _:genid3171 "PSI:MS"^^ . _:genid3172 . _:genid3172 . _:genid3172 . _:genid3172 "value-type:xsd:double"^^ . _:genid3172 "The allowed value-type for this CV term."^^ . . . _:genid3173 . _:genid3173 . _:genid3173 . _:genid3173 . "The data type raw abundance for proteins produced by Progenesis LC-MS."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001892"^^ . "Progenesis:protein raw abundance"^^ . _:genid3174 . _:genid3174 . _:genid3174 . _:genid3174 "The data type raw abundance for proteins produced by Progenesis LC-MS."^^ . _:genid3174 "PSI:MS"^^ . _:genid3175 . _:genid3175 . _:genid3175 . _:genid3175 "value-type:xsd:double"^^ . _:genid3175 "The allowed value-type for this CV term."^^ . . . _:genid3176 . _:genid3176 . _:genid3176 . _:genid3176 . "The data type raw abundance for peptide produced by Progenesis LC-MS."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001893"^^ . "Progenesis:peptide raw abundance"^^ . _:genid3177 . _:genid3177 . _:genid3177 . _:genid3177 "The data type raw abundance for peptide produced by Progenesis LC-MS."^^ . _:genid3177 "PSI:MS"^^ . _:genid3178 . _:genid3178 . _:genid3178 . _:genid3178 "value-type:xsd:double"^^ . _:genid3178 "The allowed value-type for this CV term."^^ . . . _:genid3179 . _:genid3179 . _:genid3179 . _:genid3179 . "The data type confidence score produced by Progenesis LC-MS."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001894"^^ . "Progenesis:confidence score"^^ . _:genid3180 . _:genid3180 . _:genid3180 . _:genid3180 "The data type confidence score produced by Progenesis LC-MS."^^ . _:genid3180 "PSI:MS"^^ . _:genid3181 . _:genid3181 . _:genid3181 . _:genid3181 "value-type:xsd:double"^^ . _:genid3181 "The allowed value-type for this CV term."^^ . . . _:genid3182 . _:genid3182 . _:genid3182 . _:genid3182 . "The data type peptide count produced by Progenesis LC-MS."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001895"^^ . "Progenesis:peptide count"^^ . _:genid3183 . _:genid3183 . _:genid3183 . _:genid3183 "The data type peptide count produced by Progenesis LC-MS."^^ . _:genid3183 "PSI:MS"^^ . _:genid3184 . _:genid3184 . _:genid3184 . _:genid3184 "value-type:xsd:int"^^ . _:genid3184 "The allowed value-type for this CV term."^^ . . . _:genid3185 . _:genid3185 . _:genid3185 . _:genid3185 . "The data type feature intensity produced by Progenesis LC-MS."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001896"^^ . "Progenesis:feature intensity"^^ . _:genid3186 . _:genid3186 . _:genid3186 . _:genid3186 "The data type feature intensity produced by Progenesis LC-MS."^^ . _:genid3186 "PSI:MS"^^ . _:genid3187 . _:genid3187 . _:genid3187 . _:genid3187 "value-type:xsd:double"^^ . _:genid3187 "The allowed value-type for this CV term."^^ . . . _:genid3188 . _:genid3188 . _:genid3188 . _:genid3188 . "The data type peptide counts (unique) produced by MaxQuant."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001897"^^ . "MaxQuant:peptide counts (unique)"^^ . _:genid3189 . _:genid3189 . _:genid3189 . _:genid3189 "The data type peptide counts (unique) produced by MaxQuant."^^ . _:genid3189 "PSI:MS"^^ . _:genid3190 . _:genid3190 . _:genid3190 . _:genid3190 "value-type:xsd:int"^^ . _:genid3190 "The allowed value-type for this CV term."^^ . . . _:genid3191 . _:genid3191 . _:genid3191 . _:genid3191 . "The data type peptide counts (all) produced by MaxQuant."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001898"^^ . "MaxQuant:peptide counts (all)"^^ . _:genid3192 . _:genid3192 . _:genid3192 . _:genid3192 "The data type peptide counts (all) produced by MaxQuant."^^ . _:genid3192 "PSI:MS"^^ . _:genid3193 . _:genid3193 . _:genid3193 . _:genid3193 "value-type:xsd:int"^^ . _:genid3193 "The allowed value-type for this CV term."^^ . . . _:genid3194 . _:genid3194 . _:genid3194 . _:genid3194 . "The data type peptide counts (razor+unique) produced by MaxQuant."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001899"^^ . "MaxQuant:peptide counts (razor+unique)"^^ . _:genid3195 . _:genid3195 . _:genid3195 . _:genid3195 "The data type peptide counts (razor+unique) produced by MaxQuant."^^ . _:genid3195 "PSI:MS"^^ . _:genid3196 . _:genid3196 . _:genid3196 . _:genid3196 "value-type:xsd:int"^^ . _:genid3196 "The allowed value-type for this CV term."^^ . . . _:genid3197 . _:genid3197 . _:genid3197 . _:genid3197 . "The data type sequence length produced by MaxQuant."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001900"^^ . "MaxQuant:sequence length"^^ . _:genid3198 . _:genid3198 . _:genid3198 . _:genid3198 "The data type sequence length produced by MaxQuant."^^ . _:genid3198 "PSI:MS"^^ . _:genid3199 . _:genid3199 . _:genid3199 . _:genid3199 "value-type:xsd:int"^^ . _:genid3199 "The allowed value-type for this CV term."^^ . . . _:genid3200 . _:genid3200 . _:genid3200 . _:genid3200 . "The data type PEP (posterior error probability) produced by MaxQuant."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001901"^^ . "MaxQuant:PEP"^^ . _:genid3201 . _:genid3201 . _:genid3201 . _:genid3201 "The data type PEP (posterior error probability) produced by MaxQuant."^^ . _:genid3201 "PSI:MS"^^ . _:genid3202 . _:genid3202 . _:genid3202 . _:genid3202 "value-type:xsd:double"^^ . _:genid3202 "The allowed value-type for this CV term."^^ . . . _:genid3203 . _:genid3203 . _:genid3203 . _:genid3203 . "The data type LFQ intensity produced by MaxQuant."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001902"^^ . "MaxQuant:LFQ intensity"^^ . _:genid3204 . _:genid3204 . _:genid3204 . _:genid3204 "The data type LFQ intensity produced by MaxQuant."^^ . _:genid3204 "PSI:MS"^^ . _:genid3205 . _:genid3205 . _:genid3205 . _:genid3205 "value-type:xsd:double"^^ . _:genid3205 "The allowed value-type for this CV term."^^ . . . _:genid3206 . _:genid3206 . _:genid3206 . _:genid3206 . "The data type feature intensity produced by MaxQuant."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001903"^^ . "MaxQuant:feature intensity"^^ . _:genid3207 . _:genid3207 . _:genid3207 . _:genid3207 "The data type feature intensity produced by MaxQuant."^^ . _:genid3207 "PSI:MS"^^ . _:genid3208 . _:genid3208 . _:genid3208 . _:genid3208 "value-type:xsd:double"^^ . _:genid3208 "The allowed value-type for this CV term."^^ . . . _:genid3209 . _:genid3209 . _:genid3209 . _:genid3209 . "The data type MS2 count produced by MaxQuant."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1001904"^^ . "MaxQuant:MS/MS count"^^ . _:genid3210 . _:genid3210 . _:genid3210 . _:genid3210 "The data type MS2 count produced by MaxQuant."^^ . _:genid3210 "PSI:MS"^^ . _:genid3211 . _:genid3211 . _:genid3211 . _:genid3211 "value-type:xsd:int"^^ . _:genid3211 "The allowed value-type for this CV term."^^ . . . _:genid3212 . _:genid3212 . _:genid3212 . _:genid3212 . "The emPAI value of protein abundance, produced from the emPAI algorithm."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001905"^^ . "emPAI value"^^ . _:genid3213 . _:genid3213 . _:genid3213 . _:genid3213 "The emPAI value of protein abundance, produced from the emPAI algorithm."^^ . _:genid3213 "PSI:MS"^^ . _:genid3214 . _:genid3214 . _:genid3214 . _:genid3214 "value-type:xsd:double"^^ . _:genid3214 "The allowed value-type for this CV term."^^ . . . _:genid3215 . _:genid3215 . _:genid3215 . _:genid3215 . "The APEX value of protein abundance, produced from the APEX software."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001906"^^ . "APEX value"^^ . _:genid3216 . _:genid3216 . _:genid3216 . _:genid3216 "The APEX value of protein abundance, produced from the APEX software."^^ . _:genid3216 "PSI:MS"^^ . _:genid3217 . _:genid3217 . _:genid3217 . _:genid3217 "value-type:xsd:double"^^ . _:genid3217 "The allowed value-type for this CV term."^^ . . . _:genid3218 . _:genid3218 . _:genid3218 . _:genid3218 . _:genid3219 . _:genid3219 . _:genid3219 . _:genid3219 . _:genid3220 . _:genid3220 . _:genid3220 . _:genid3220 . "The full width of a retention time window for a chromatographic peak."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001907"^^ . "retention time window width"^^ . _:genid3221 . _:genid3221 . _:genid3221 . _:genid3221 "The full width of a retention time window for a chromatographic peak."^^ . _:genid3221 "PSI:MS"^^ . _:genid3222 . _:genid3222 . _:genid3222 . _:genid3222 "value-type:xsd:float"^^ . _:genid3222 "The allowed value-type for this CV term."^^ . . . "Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source."^^ . "MS"^^ . "MS:1001908"^^ . "ISQ"^^ . _:genid3223 . _:genid3223 . _:genid3223 . _:genid3223 "Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source."^^ . _:genid3223 "PSI:MS"^^ . . . "Thermo Scientific second generation Velos."^^ . "MS"^^ . "MS:1001909"^^ . "Velos Plus"^^ . _:genid3224 . _:genid3224 . _:genid3224 . _:genid3224 "Thermo Scientific second generation Velos."^^ . _:genid3224 "PSI:MS"^^ . . . "Thermo Scientific LTQ Orbitrap Elite, often just referred to as the Orbitrap Elite."^^ . "MS"^^ . "MS:1001910"^^ . "LTQ Orbitrap Elite"^^ . _:genid3225 . _:genid3225 . _:genid3225 . _:genid3225 "Thermo Scientific LTQ Orbitrap Elite, often just referred to as the Orbitrap Elite."^^ . _:genid3225 "PSI:MS"^^ . . . "Thermo Scientific Q Exactive."^^ . "MS"^^ . "MS:1001911"^^ . "Q Exactive"^^ . _:genid3226 . _:genid3226 . _:genid3226 . _:genid3226 "Thermo Scientific Q Exactive."^^ . _:genid3226 "PSI:MS"^^ . . . . . "Thermo Scientific PinPoint SRM analysis software."^^ . "MS"^^ . "MS:1001912"^^ . "PinPoint"^^ . _:genid3227 . _:genid3227 . _:genid3227 . _:genid3227 "Thermo Scientific PinPoint SRM analysis software."^^ . _:genid3227 "PSI:MS"^^ . . . _:genid3228 . _:genid3228 . _:genid3228 . _:genid3228 . _:genid3229 . _:genid3229 . _:genid3229 . _:genid3229 . "Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide in volts."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001913"^^ . "S-lens voltage"^^ . _:genid3230 . _:genid3230 . _:genid3230 . _:genid3230 "Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide in volts."^^ . _:genid3230 "PSI:MS"^^ . _:genid3231 . _:genid3231 . _:genid3231 . _:genid3231 "value-type:xsd:float"^^ . _:genid3231 "The allowed value-type for this CV term."^^ . . . "Python module to interface mzML Data."^^ . "MS"^^ . "MS:1001914"^^ . "pymzML"^^ . _:genid3232 . _:genid3232 . _:genid3232 . _:genid3232 "Python module to interface mzML Data."^^ . _:genid3232 "PSI:MS"^^ . . . _:genid3233 . _:genid3233 . _:genid3233 . _:genid3233 . "Enzyme leukocyte elastase (EC 3.4.21.37)."^^ . "MS"^^ . "MS:1001915"^^ . "leukocyte elastase"^^ . _:genid3234 . _:genid3234 . _:genid3234 . _:genid3234 "Enzyme leukocyte elastase (EC 3.4.21.37)."^^ . _:genid3234 "BRENDA:3.4.21.37"^^ . . . _:genid3235 . _:genid3235 . _:genid3235 . _:genid3235 . "Enzyme proline endopeptidase (EC 3.4.21.26)."^^ . "MS"^^ . "MS:1001916"^^ . "proline endopeptidase"^^ . _:genid3236 . _:genid3236 . _:genid3236 . _:genid3236 "Enzyme proline endopeptidase (EC 3.4.21.26)."^^ . _:genid3236 "BRENDA:3.4.21.26"^^ . . . _:genid3237 . _:genid3237 . _:genid3237 . _:genid3237 . "Enzyme glutamyl endopeptidase (EC 3.4.21.19)."^^ . "Glu-C"^^ . "staphylococcal protease"^^ . "MS"^^ . "MS:1001917"^^ . "glutamyl endopeptidase"^^ . _:genid3238 . _:genid3238 . _:genid3238 . _:genid3238 "Enzyme glutamyl endopeptidase (EC 3.4.21.19)."^^ . _:genid3238 "BRENDA:3.4.21.19"^^ . . . _:genid3239 . _:genid3239 . _:genid3239 . _:genid3239 . "Chemical iodobenzoate. Cleaves after W."^^ . "MS"^^ . "MS:1001918"^^ . "2-iodobenzoate"^^ . _:genid3240 . _:genid3240 . _:genid3240 . _:genid3240 "Chemical iodobenzoate. Cleaves after W."^^ . _:genid3240 "PubChem_Compound:4739928"^^ . . . _:genid3241 . _:genid3241 . _:genid3241 . _:genid3241 . "Main identifier of a ProteomeXchange dataset."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001919"^^ . "ProteomeXchange accession number"^^ . _:genid3242 . _:genid3242 . _:genid3242 . _:genid3242 "Main identifier of a ProteomeXchange dataset."^^ . _:genid3242 "PSI:PI"^^ . _:genid3243 . _:genid3243 . _:genid3243 . _:genid3243 "value-type:xsd:string"^^ . _:genid3243 "The allowed value-type for this CV term."^^ . . . _:genid3244 . _:genid3244 . _:genid3244 . _:genid3244 . "Version number of a ProteomeXchange accession number."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001921"^^ . "ProteomeXchange accession number version number"^^ . _:genid3245 . _:genid3245 . _:genid3245 . _:genid3245 "Version number of a ProteomeXchange accession number."^^ . _:genid3245 "PSI:PI"^^ . _:genid3246 . _:genid3246 . _:genid3246 . _:genid3246 "value-type:xsd:nonNegativeInteger"^^ . _:genid3246 "The allowed value-type for this CV term."^^ . . . _:genid3247 . _:genid3247 . _:genid3247 . _:genid3247 . _:genid3248 . _:genid3248 . _:genid3248 . _:genid3248 . "DOI unique identifier of a publication."^^ . "value-type:xsd:string"^^ . "doi"^^ . "MS"^^ . "MS:1001922"^^ . "Digital Object Identifier (DOI)"^^ . _:genid3249 . _:genid3249 . _:genid3249 . _:genid3249 "DOI unique identifier of a publication."^^ . _:genid3249 "PSI:PI"^^ . _:genid3249 "http://dx.doi.org"^^ . _:genid3250 . _:genid3250 . _:genid3250 . _:genid3250 "value-type:xsd:string"^^ . _:genid3250 "The allowed value-type for this CV term."^^ . . . _:genid3251 . _:genid3251 . _:genid3251 . _:genid3251 . "Free text attribute that can enrich the information about an entity."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001923"^^ . "external reference keyword"^^ . _:genid3252 . _:genid3252 . _:genid3252 . _:genid3252 "Free text attribute that can enrich the information about an entity."^^ . _:genid3252 "PSI:PI"^^ . _:genid3253 . _:genid3253 . _:genid3253 . _:genid3253 "value-type:xsd:string"^^ . _:genid3253 "The allowed value-type for this CV term."^^ . . . _:genid3254 . _:genid3254 . _:genid3254 . _:genid3254 . "Keyword present in a scientific publication."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001924"^^ . "journal article keyword"^^ . _:genid3255 . _:genid3255 . _:genid3255 . _:genid3255 "Keyword present in a scientific publication."^^ . _:genid3255 "PSI:PI"^^ . _:genid3256 . _:genid3256 . _:genid3256 . _:genid3256 "value-type:xsd:string"^^ . _:genid3256 "The allowed value-type for this CV term."^^ . . . _:genid3257 . _:genid3257 . _:genid3257 . _:genid3257 . "Keyword assigned by the data submitter."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001925"^^ . "submitter keyword"^^ . _:genid3258 . _:genid3258 . _:genid3258 . _:genid3258 "Keyword assigned by the data submitter."^^ . _:genid3258 "PSI:PI"^^ . _:genid3259 . _:genid3259 . _:genid3259 . _:genid3259 "value-type:xsd:string"^^ . _:genid3259 "The allowed value-type for this CV term."^^ . . . _:genid3260 . _:genid3260 . _:genid3260 . _:genid3260 . "Keyword assigned by a data curator."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001926"^^ . "curator keyword"^^ . _:genid3261 . _:genid3261 . _:genid3261 . _:genid3261 "Keyword assigned by a data curator."^^ . _:genid3261 "PSI:PI"^^ . _:genid3262 . _:genid3262 . _:genid3262 . _:genid3262 "value-type:xsd:string"^^ . _:genid3262 "The allowed value-type for this CV term."^^ . . . _:genid3263 . _:genid3263 . _:genid3263 . _:genid3263 . "Hash assigned by the Tranche resource to an individual file."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001927"^^ . "Tranche file hash"^^ . _:genid3264 . _:genid3264 . _:genid3264 . _:genid3264 "Hash assigned by the Tranche resource to an individual file."^^ . _:genid3264 "PSI:PI"^^ . _:genid3265 . _:genid3265 . _:genid3265 . _:genid3265 "value-type:xsd:string"^^ . _:genid3265 "The allowed value-type for this CV term."^^ . . . _:genid3266 . _:genid3266 . _:genid3266 . _:genid3266 . "Hash assigned by the Tranche resource to a whole project."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001928"^^ . "Tranche project hash"^^ . _:genid3267 . _:genid3267 . _:genid3267 . _:genid3267 "Hash assigned by the Tranche resource to a whole project."^^ . _:genid3267 "PSI:PI"^^ . _:genid3268 . _:genid3268 . _:genid3268 . _:genid3268 "value-type:xsd:string"^^ . _:genid3268 "The allowed value-type for this CV term."^^ . . . _:genid3269 . _:genid3269 . _:genid3269 . _:genid3269 . "URI that allows the access to one experiment in the PRIDE database."^^ . "value-type:xsd:anyURI"^^ . "MS"^^ . "MS:1001929"^^ . "PRIDE experiment URI"^^ . _:genid3270 . _:genid3270 . _:genid3270 . _:genid3270 "URI that allows the access to one experiment in the PRIDE database."^^ . _:genid3270 "PSI:PI"^^ . _:genid3271 . _:genid3271 . _:genid3271 . _:genid3271 "value-type:xsd:anyURI"^^ . _:genid3271 "The allowed value-type for this CV term."^^ . . . _:genid3272 . _:genid3272 . _:genid3272 . _:genid3272 . "URI that allows the access to one project in the PRIDE database."^^ . "value-type:xsd:anyURI"^^ . "MS"^^ . "MS:1001930"^^ . "PRIDE project URI"^^ . _:genid3273 . _:genid3273 . _:genid3273 . _:genid3273 "URI that allows the access to one project in the PRIDE database."^^ . _:genid3273 "PSI:PI"^^ . _:genid3274 . _:genid3274 . _:genid3274 . _:genid3274 "value-type:xsd:anyURI"^^ . _:genid3274 "The allowed value-type for this CV term."^^ . . _:genid3275 . _:genid3275 . _:genid3275 . _:genid3275 . "The source interface."^^ . "MS"^^ . "MS:1001931"^^ . "source interface"^^ . _:genid3276 . _:genid3276 . _:genid3276 . _:genid3276 "The source interface."^^ . _:genid3276 "PSI:MS"^^ . . _:genid3277 . _:genid3277 . _:genid3277 . _:genid3277 . _:genid3278 . _:genid3278 . _:genid3278 . _:genid3278 . "The source interface model."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001932"^^ . "source interface model"^^ . _:genid3279 . _:genid3279 . _:genid3279 . _:genid3279 "The source interface model."^^ . _:genid3279 "PSI:MS"^^ . _:genid3280 . _:genid3280 . _:genid3280 . _:genid3280 "value-type:xsd:string"^^ . _:genid3280 "The allowed value-type for this CV term."^^ . . _:genid3281 . _:genid3281 . _:genid3281 . _:genid3281 . _:genid3282 . _:genid3282 . _:genid3282 . _:genid3282 . "The source sprayer."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001933"^^ . "source sprayer"^^ . _:genid3283 . _:genid3283 . _:genid3283 . _:genid3283 "The source sprayer."^^ . _:genid3283 "PSI:MS"^^ . _:genid3284 . _:genid3284 . _:genid3284 . _:genid3284 "value-type:xsd:string"^^ . _:genid3284 "The allowed value-type for this CV term."^^ . . _:genid3285 . _:genid3285 . _:genid3285 . _:genid3285 . "The source sprayer type."^^ . "MS"^^ . "MS:1001934"^^ . "source sprayer type"^^ . _:genid3286 . _:genid3286 . _:genid3286 . _:genid3286 "The source sprayer type."^^ . _:genid3286 "PSI:MS"^^ . . _:genid3287 . _:genid3287 . _:genid3287 . _:genid3287 . _:genid3288 . _:genid3288 . _:genid3288 . _:genid3288 . "The source sprayer manufacturer."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001935"^^ . "source sprayer manufacturer"^^ . _:genid3289 . _:genid3289 . _:genid3289 . _:genid3289 "The source sprayer manufacturer."^^ . _:genid3289 "PSI:MS"^^ . _:genid3290 . _:genid3290 . _:genid3290 . _:genid3290 "value-type:xsd:string"^^ . _:genid3290 "The allowed value-type for this CV term."^^ . . _:genid3291 . _:genid3291 . _:genid3291 . _:genid3291 . _:genid3292 . _:genid3292 . _:genid3292 . _:genid3292 . "The source sprayer model."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001936"^^ . "source sprayer model"^^ . _:genid3293 . _:genid3293 . _:genid3293 . _:genid3293 "The source sprayer model."^^ . _:genid3293 "PSI:MS"^^ . _:genid3294 . _:genid3294 . _:genid3294 . _:genid3294 "value-type:xsd:string"^^ . _:genid3294 "The allowed value-type for this CV term."^^ . . _:genid3295 . _:genid3295 . _:genid3295 . _:genid3295 . "Plate where the sample solution is spotted in a MALDI or similar instrument."^^ . "MS"^^ . "MS:1001937"^^ . "sample plate"^^ . _:genid3296 . _:genid3296 . _:genid3296 . _:genid3296 "Plate where the sample solution is spotted in a MALDI or similar instrument."^^ . _:genid3296 "PSI:MS"^^ . . _:genid3297 . _:genid3297 . _:genid3297 . _:genid3297 . "The sample plate type."^^ . "MS"^^ . "MS:1001938"^^ . "sample plate type"^^ . _:genid3298 . _:genid3298 . _:genid3298 . _:genid3298 "The sample plate type."^^ . _:genid3298 "PSI:MS"^^ . . . "Stainless steel plate."^^ . "MS"^^ . "MS:1001939"^^ . "stainless steel plate"^^ . _:genid3299 . _:genid3299 . _:genid3299 . _:genid3299 "Stainless steel plate."^^ . _:genid3299 "PSI:MS"^^ . . . "Coated glass plate."^^ . "MS"^^ . "MS:1001940"^^ . "coated glass plate"^^ . _:genid3300 . _:genid3300 . _:genid3300 . _:genid3300 "Coated glass plate."^^ . _:genid3300 "PSI:MS"^^ . . _:genid3301 . _:genid3301 . _:genid3301 . _:genid3301 . "Whether the sprayer is fed or is loaded with sample once."^^ . "MS"^^ . "MS:1001941"^^ . "electrospray supply type"^^ . _:genid3302 . _:genid3302 . _:genid3302 . _:genid3302 "Whether the sprayer is fed or is loaded with sample once."^^ . _:genid3302 "PSI:MS"^^ . . . "The sprayer is loaded with sample once."^^ . "MS"^^ . "MS:1001942"^^ . "static supply electrospray"^^ . _:genid3303 . _:genid3303 . _:genid3303 . _:genid3303 "The sprayer is loaded with sample once."^^ . _:genid3303 "PSI:MS"^^ . . . "The sprayer is continuously fed with sample."^^ . "MS"^^ . "MS:1001943"^^ . "fed supply electrospray"^^ . _:genid3304 . _:genid3304 . _:genid3304 . _:genid3304 "The sprayer is continuously fed with sample."^^ . _:genid3304 "PSI:MS"^^ . . . _:genid3305 . _:genid3305 . _:genid3305 . _:genid3305 . _:genid3306 . _:genid3306 . _:genid3306 . _:genid3306 . "Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts."^^ . "value-type:xsd:float"^^ . "CXP"^^ . "MS"^^ . "MS:1001944"^^ . "Collision cell exit potential"^^ . _:genid3307 . _:genid3307 . _:genid3307 . _:genid3307 "Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts."^^ . _:genid3307 "PSI:MS"^^ . _:genid3308 . _:genid3308 . _:genid3308 . _:genid3308 "value-type:xsd:float"^^ . _:genid3308 "The allowed value-type for this CV term."^^ . . . "LECO nominal mass resolution time-of-flight GCxGC mass spectrometer."^^ . "MS"^^ . "MS:1001945"^^ . "Pegasus 4D"^^ . _:genid3309 . _:genid3309 . _:genid3309 . _:genid3309 "LECO nominal mass resolution time-of-flight GCxGC mass spectrometer."^^ . _:genid3309 "PSI:MS"^^ . . . . . "PEAKS Studio software for data analysis."^^ . "MS"^^ . "MS:1001946"^^ . "PEAKS Studio"^^ . _:genid3310 . _:genid3310 . _:genid3310 . _:genid3310 "PEAKS Studio software for data analysis."^^ . _:genid3310 "PSI:MS"^^ . . . . . "PEAKS Online software for high throughput data analysis."^^ . "MS"^^ . "MS:1001947"^^ . "PEAKS Online"^^ . _:genid3311 . _:genid3311 . _:genid3311 . _:genid3311 "PEAKS Online software for high throughput data analysis."^^ . _:genid3311 "PSI:MS"^^ . . . . . "PEAKS Node software for high throughput data analysis."^^ . "MS"^^ . "MS:1001948"^^ . "PEAKS Node"^^ . _:genid3312 . _:genid3312 . _:genid3312 . _:genid3312 "PEAKS Node software for high throughput data analysis."^^ . _:genid3312 "PSI:MS"^^ . . . "Bioinformatics Solutions Inc. Software for data processing and analysis."^^ . "MS"^^ . "MS:1001949"^^ . "BSI software"^^ . _:genid3313 . _:genid3313 . _:genid3313 . _:genid3313 "Bioinformatics Solutions Inc. Software for data processing and analysis."^^ . _:genid3313 "PSI:MS"^^ . . . _:genid3314 . _:genid3314 . _:genid3314 . _:genid3314 . "The PEAKS peptide '-10lgP Score'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001950"^^ . "PEAKS:peptideScore"^^ . _:genid3315 . _:genid3315 . _:genid3315 . _:genid3315 "The PEAKS peptide '-10lgP Score'."^^ . _:genid3315 "PSI:MS"^^ . _:genid3316 . _:genid3316 . _:genid3316 . _:genid3316 "value-type:xsd:double"^^ . _:genid3316 "The allowed value-type for this CV term."^^ . . . _:genid3317 . _:genid3317 . _:genid3317 . _:genid3317 . "The PEAKS protein '-10lgP Score'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001951"^^ . "PEAKS:proteinScore"^^ . _:genid3318 . _:genid3318 . _:genid3318 . _:genid3318 "The PEAKS protein '-10lgP Score'."^^ . _:genid3318 "PSI:MS"^^ . _:genid3319 . _:genid3319 . _:genid3319 . _:genid3319 "value-type:xsd:double"^^ . _:genid3319 "The allowed value-type for this CV term."^^ . . . _:genid3320 . _:genid3320 . _:genid3320 . _:genid3320 . "The ZCore probability score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1001952"^^ . "ZCore:probScore"^^ . _:genid3321 . _:genid3321 . _:genid3321 . _:genid3321 "The ZCore probability score."^^ . _:genid3321 "PSI:MS"^^ . _:genid3322 . _:genid3322 . _:genid3322 . _:genid3322 "value-type:xsd:double"^^ . _:genid3322 "The allowed value-type for this CV term."^^ . . _:genid3323 . _:genid3323 . _:genid3323 . _:genid3323 . _:genid3324 . _:genid3324 . _:genid3324 . _:genid3324 . "The source interface manufacturer."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001953"^^ . "source interface manufacturer"^^ . _:genid3325 . _:genid3325 . _:genid3325 . _:genid3325 "The source interface manufacturer."^^ . _:genid3325 "PSI:MS"^^ . _:genid3326 . _:genid3326 . _:genid3326 . _:genid3326 "value-type:xsd:string"^^ . _:genid3326 "The allowed value-type for this CV term."^^ . . _:genid3327 . _:genid3327 . _:genid3327 . _:genid3327 . _:genid3328 . _:genid3328 . _:genid3328 . _:genid3328 . "Parameters used in the mass spectrometry acquisition."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001954"^^ . "acquisition parameter"^^ . _:genid3329 . _:genid3329 . _:genid3329 . _:genid3329 "Parameters used in the mass spectrometry acquisition."^^ . _:genid3329 "PSI:MS"^^ . _:genid3330 . _:genid3330 . _:genid3330 . _:genid3330 "value-type:xsd:string"^^ . _:genid3330 "The allowed value-type for this CV term."^^ . . . "No cleavage."^^ . "MS"^^ . "MS:1001955"^^ . "no cleavage"^^ . _:genid3331 . _:genid3331 . _:genid3331 . _:genid3331 "No cleavage."^^ . _:genid3331 "PSI:MS"^^ . . . "Unspecific cleavage."^^ . "MS"^^ . "MS:1001956"^^ . "unspecific cleavage"^^ . _:genid3332 . _:genid3332 . _:genid3332 . _:genid3332 "Unspecific cleavage."^^ . _:genid3332 "PSI:MS"^^ . . . "Regular expression for leukocyte elastase."^^ . "MS"^^ . "MS:1001957"^^ . "(?<=[ALIV])(?"^^ . _:genid3333 . _:genid3333 . _:genid3333 . _:genid3333 "Regular expression for leukocyte elastase."^^ . _:genid3333 "PSI:PI"^^ . . . "Regular expression for proline endopeptidase."^^ . "MS"^^ . "MS:1001958"^^ . "(?<=[HKR]P)(?"^^ . _:genid3334 . _:genid3334 . _:genid3334 . _:genid3334 "Regular expression for proline endopeptidase."^^ . _:genid3334 "PSI:PI"^^ . . . "Regular expression for glutamyl endopeptidase."^^ . "MS"^^ . "MS:1001959"^^ . "(?<=[^E]E)"^^ . _:genid3335 . _:genid3335 . _:genid3335 . _:genid3335 "Regular expression for glutamyl endopeptidase."^^ . _:genid3335 "PSI:PI"^^ . . . "Regular expression for 2-iodobenzoate."^^ . "MS"^^ . "MS:1001960"^^ . "(?<=W)"^^ . _:genid3336 . _:genid3336 . _:genid3336 . _:genid3336 "Regular expression for 2-iodobenzoate."^^ . _:genid3336 "PSI:PI"^^ . . _:genid3337 . _:genid3337 . _:genid3337 . _:genid3337 . _:genid3338 . _:genid3338 . _:genid3338 . _:genid3338 . "Algorithm used to score the match between a spectrum and a peptide ion."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001961"^^ . "peptide spectrum match scoring algorithm"^^ . _:genid3339 . _:genid3339 . _:genid3339 . _:genid3339 "Algorithm used to score the match between a spectrum and a peptide ion."^^ . _:genid3339 "PSI:MS"^^ . _:genid3340 . _:genid3340 . _:genid3340 . _:genid3340 "value-type:xsd:string"^^ . _:genid3340 "The allowed value-type for this CV term."^^ . . . _:genid3341 . _:genid3341 . _:genid3341 . _:genid3341 . "C13 peaks to use in peak detection."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1001962"^^ . "Mascot:C13 counts"^^ . _:genid3342 . _:genid3342 . _:genid3342 . _:genid3342 "C13 peaks to use in peak detection."^^ . _:genid3342 "PSI:MS"^^ . _:genid3343 . _:genid3343 . _:genid3343 . _:genid3343 "value-type:xsd:nonNegativeInteger"^^ . _:genid3343 "The allowed value-type for this CV term."^^ . . . _:genid3344 . _:genid3344 . _:genid3344 . _:genid3344 . "Weighting factor for protein list compilation by ProteinExtractor."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001963"^^ . "ProteinExtractor:Weighting"^^ . _:genid3345 . _:genid3345 . _:genid3345 . _:genid3345 "Weighting factor for protein list compilation by ProteinExtractor."^^ . _:genid3345 "PSI:MS"^^ . _:genid3346 . _:genid3346 . _:genid3346 . _:genid3346 "value-type:xsd:float"^^ . _:genid3346 "The allowed value-type for this CV term."^^ . . . _:genid3347 . _:genid3347 . _:genid3347 . _:genid3347 . "Flag indicating a second round search with Mascot."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001964"^^ . "ProteinScape:second round Mascot"^^ . _:genid3348 . _:genid3348 . _:genid3348 . _:genid3348 "Flag indicating a second round search with Mascot."^^ . _:genid3348 "PSI:MS"^^ . _:genid3349 . _:genid3349 . _:genid3349 . _:genid3349 "value-type:xsd:boolean"^^ . _:genid3349 "The allowed value-type for this CV term."^^ . . . _:genid3350 . _:genid3350 . _:genid3350 . _:genid3350 . "Flag indicating a second round search with Phenyx."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1001965"^^ . "ProteinScape:second round Phenyx"^^ . _:genid3351 . _:genid3351 . _:genid3351 . _:genid3351 "Flag indicating a second round search with Phenyx."^^ . _:genid3351 "PSI:MS"^^ . _:genid3352 . _:genid3352 . _:genid3352 . _:genid3352 "value-type:xsd:boolean"^^ . _:genid3352 "The allowed value-type for this CV term."^^ . . . "The mobility of an MS2 product ion, as measured by ion mobility mass spectrometry."^^ . "MS"^^ . "MS:1001966"^^ . "product ion mobility"^^ . _:genid3353 . _:genid3353 . _:genid3353 . _:genid3353 "The mobility of an MS2 product ion, as measured by ion mobility mass spectrometry."^^ . _:genid3353 "PSI:MS"^^ . . . _:genid3354 . _:genid3354 . _:genid3354 . _:genid3354 . _:genid3355 . _:genid3355 . _:genid3355 . _:genid3355 . "OBSOLETE The ion drift time of an MS2 product ion."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1001967"^^ . "This term was made obsolete because it was replaced by ion mobility drift time (MS:1002476)."^^ . "product ion drift time"^^ . "true"^^ . _:genid3356 . _:genid3356 . _:genid3356 . _:genid3356 "OBSOLETE The ion drift time of an MS2 product ion."^^ . _:genid3356 "PSI:MS"^^ . _:genid3357 . _:genid3357 . _:genid3357 . _:genid3357 "value-type:xsd:float"^^ . _:genid3357 "The allowed value-type for this CV term."^^ . . . "Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence at the PSM-level."^^ . "MS"^^ . "MS:1001968"^^ . "PTM localization PSM-level statistic"^^ . _:genid3358 . _:genid3358 . _:genid3358 . _:genid3358 "Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence at the PSM-level."^^ . _:genid3358 "PSI:MS"^^ . . . _:genid3359 . _:genid3359 . _:genid3359 . _:genid3359 . _:genid3360 . _:genid3360 . _:genid3360 . _:genid3360 . "phosphoRS score for PTM site location at the PSM-level."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001969"^^ . "phosphoRS score"^^ . _:genid3361 . _:genid3361 . _:genid3361 . _:genid3361 "phosphoRS score for PTM site location at the PSM-level."^^ . _:genid3361 "DOI:10.1021/pr200611n"^^ . _:genid3361 "PMID:22073976"^^ . _:genid3362 . _:genid3362 . _:genid3362 . _:genid3362 "value-type:xsd:string"^^ . _:genid3362 "The allowed value-type for this CV term."^^ . . . _:genid3363 . _:genid3363 . _:genid3363 . _:genid3363 . _:genid3364 . _:genid3364 . _:genid3364 . _:genid3364 . "Probability that the respective isoform is correct."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001970"^^ . "phosphoRS sequence probability"^^ . _:genid3365 . _:genid3365 . _:genid3365 . _:genid3365 "Probability that the respective isoform is correct."^^ . _:genid3365 "DOI:10.1021/pr200611n"^^ . _:genid3365 "PMID:22073976"^^ . _:genid3366 . _:genid3366 . _:genid3366 . _:genid3366 "value-type:xsd:string"^^ . _:genid3366 "The allowed value-type for this CV term."^^ . . . _:genid3367 . _:genid3367 . _:genid3367 . _:genid3367 . _:genid3368 . _:genid3368 . _:genid3368 . _:genid3368 . "Estimate of the probability that the respective site is truly phosphorylated."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001971"^^ . "phosphoRS site probability"^^ . _:genid3369 . _:genid3369 . _:genid3369 . _:genid3369 "Estimate of the probability that the respective site is truly phosphorylated."^^ . _:genid3369 "DOI:10.1021/pr200611n"^^ . _:genid3369 "PMID:22073976"^^ . _:genid3370 . _:genid3370 . _:genid3370 . _:genid3370 "value-type:xsd:string"^^ . _:genid3370 "The allowed value-type for this CV term."^^ . . . _:genid3371 . _:genid3371 . _:genid3371 . _:genid3371 . "Version of the post-translational modification scoring algorithm."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001972"^^ . "PTM scoring algorithm version"^^ . _:genid3372 . _:genid3372 . _:genid3372 . _:genid3372 "Version of the post-translational modification scoring algorithm."^^ . _:genid3372 "PSI:MS"^^ . _:genid3373 . _:genid3373 . _:genid3373 . _:genid3373 "value-type:xsd:string"^^ . _:genid3373 "The allowed value-type for this CV term."^^ . . . "DeBunker software."^^ . "MS"^^ . "MS:1001973"^^ . "DeBunker"^^ . _:genid3374 . _:genid3374 . _:genid3374 . _:genid3374 "DeBunker software."^^ . _:genid3374 "PSI:MS"^^ . . . . _:genid3375 . _:genid3375 . _:genid3375 . _:genid3375 . _:genid3376 . _:genid3376 . _:genid3376 . _:genid3376 . "Score specific to DeBunker."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001974"^^ . "DeBunker:score"^^ . _:genid3377 . _:genid3377 . _:genid3377 . _:genid3377 "Score specific to DeBunker."^^ . _:genid3377 "PSI:MS"^^ . _:genid3378 . _:genid3378 . _:genid3378 . _:genid3378 "value-type:xsd:string"^^ . _:genid3378 "The allowed value-type for this CV term."^^ . . . _:genid3379 . _:genid3379 . _:genid3379 . _:genid3379 . _:genid3380 . _:genid3380 . _:genid3380 . _:genid3380 . _:genid3381 . _:genid3381 . _:genid3381 . _:genid3381 . _:genid3382 . _:genid3382 . _:genid3382 . _:genid3382 . "The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value."^^ . "value-type:xsd:double"^^ . "m/z difference"^^ . "MS"^^ . "MS:1001975"^^ . "delta m/z"^^ . _:genid3383 . _:genid3383 . _:genid3383 . _:genid3383 "The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value."^^ . _:genid3383 "PSI:MS"^^ . _:genid3384 . _:genid3384 . _:genid3384 . _:genid3384 "value-type:xsd:double"^^ . _:genid3384 "The allowed value-type for this CV term."^^ . . . _:genid3385 . _:genid3385 . _:genid3385 . _:genid3385 . _:genid3386 . _:genid3386 . _:genid3386 . _:genid3386 . _:genid3387 . _:genid3387 . _:genid3387 . _:genid3387 . _:genid3388 . _:genid3388 . _:genid3388 . _:genid3388 . "The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value."^^ . "value-type:xsd:double"^^ . "mass difference"^^ . "MS"^^ . "MS:1001976"^^ . "delta M"^^ . _:genid3389 . _:genid3389 . _:genid3389 . _:genid3389 "The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value."^^ . _:genid3389 "PSI:MS"^^ . _:genid3390 . _:genid3390 . _:genid3390 . _:genid3390 "value-type:xsd:double"^^ . _:genid3390 "The allowed value-type for this CV term."^^ . . . "MSQuant software."^^ . "MS"^^ . "MS:1001977"^^ . "MSQuant"^^ . _:genid3391 . _:genid3391 . _:genid3391 . _:genid3391 "MSQuant software."^^ . _:genid3391 "PSI:MS"^^ . . . _:genid3392 . _:genid3392 . _:genid3392 . _:genid3392 . _:genid3393 . _:genid3393 . _:genid3393 . _:genid3393 . "The PTM score from MSQuant software."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001978"^^ . "MSQuant:PTM-score"^^ . _:genid3394 . _:genid3394 . _:genid3394 . _:genid3394 "The PTM score from MSQuant software."^^ . _:genid3394 "DOI:10.1021/pr900721e"^^ . _:genid3394 "PMID:19888749"^^ . _:genid3395 . _:genid3395 . _:genid3395 . _:genid3395 "value-type:xsd:string"^^ . _:genid3395 "The allowed value-type for this CV term."^^ . . . _:genid3396 . _:genid3396 . _:genid3396 . _:genid3396 . _:genid3397 . _:genid3397 . _:genid3397 . _:genid3397 . "The PTM score from MaxQuant software."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001979"^^ . "MaxQuant:PTM Score"^^ . _:genid3398 . _:genid3398 . _:genid3398 . _:genid3398 "The PTM score from MaxQuant software."^^ . _:genid3398 "PSI:MS"^^ . _:genid3399 . _:genid3399 . _:genid3399 . _:genid3399 "value-type:xsd:string"^^ . _:genid3399 "The allowed value-type for this CV term."^^ . . . _:genid3400 . _:genid3400 . _:genid3400 . _:genid3400 . _:genid3401 . _:genid3401 . _:genid3401 . _:genid3401 . "The Phospho (STY) Probabilities from MaxQuant software."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001980"^^ . "MaxQuant:Phospho (STY) Probabilities"^^ . _:genid3402 . _:genid3402 . _:genid3402 . _:genid3402 "The Phospho (STY) Probabilities from MaxQuant software."^^ . _:genid3402 "PSI:MS"^^ . _:genid3403 . _:genid3403 . _:genid3403 . _:genid3403 "value-type:xsd:string"^^ . _:genid3403 "The allowed value-type for this CV term."^^ . . . _:genid3404 . _:genid3404 . _:genid3404 . _:genid3404 . "The Phospho (STY) Score Diffs from MaxQuant software."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001981"^^ . "MaxQuant:Phospho (STY) Score Diffs"^^ . _:genid3405 . _:genid3405 . _:genid3405 . _:genid3405 "The Phospho (STY) Score Diffs from MaxQuant software."^^ . _:genid3405 "PSI:MS"^^ . _:genid3406 . _:genid3406 . _:genid3406 . _:genid3406 "value-type:xsd:string"^^ . _:genid3406 "The allowed value-type for this CV term."^^ . . . _:genid3407 . _:genid3407 . _:genid3407 . _:genid3407 . _:genid3408 . _:genid3408 . _:genid3408 . _:genid3408 . "The P-site localization probability value from MaxQuant software."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001982"^^ . "MaxQuant:P-site localization probability"^^ . _:genid3409 . _:genid3409 . _:genid3409 . _:genid3409 "The P-site localization probability value from MaxQuant software."^^ . _:genid3409 "PSI:MS"^^ . _:genid3410 . _:genid3410 . _:genid3410 . _:genid3410 "value-type:xsd:string"^^ . _:genid3410 "The allowed value-type for this CV term."^^ . . . _:genid3411 . _:genid3411 . _:genid3411 . _:genid3411 . _:genid3412 . _:genid3412 . _:genid3412 . _:genid3412 . "The PTM Delta Score value from MaxQuant software (Difference between highest scoring site and second highest)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001983"^^ . "MaxQuant:PTM Delta Score"^^ . _:genid3413 . _:genid3413 . _:genid3413 . _:genid3413 "The PTM Delta Score value from MaxQuant software (Difference between highest scoring site and second highest)."^^ . _:genid3413 "PSI:MS"^^ . _:genid3414 . _:genid3414 . _:genid3414 . _:genid3414 "value-type:xsd:string"^^ . _:genid3414 "The allowed value-type for this CV term."^^ . . . "Ascore software."^^ . "MS"^^ . "MS:1001984"^^ . "Ascore software"^^ . _:genid3415 . _:genid3415 . _:genid3415 . _:genid3415 "Ascore software."^^ . _:genid3415 "PSI:MS"^^ . . . _:genid3416 . _:genid3416 . _:genid3416 . _:genid3416 . _:genid3417 . _:genid3417 . _:genid3417 . _:genid3417 . "A-score for PTM site location at the PSM-level."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001985"^^ . "Ascore"^^ . _:genid3418 . _:genid3418 . _:genid3418 . _:genid3418 "A-score for PTM site location at the PSM-level."^^ . _:genid3418 "DOI:10.1038/nbt1240"^^ . _:genid3418 "PMID:16964243"^^ . _:genid3419 . _:genid3419 . _:genid3419 . _:genid3419 "value-type:xsd:string"^^ . _:genid3419 "The allowed value-type for this CV term."^^ . . . _:genid3420 . _:genid3420 . _:genid3420 . _:genid3420 . _:genid3421 . _:genid3421 . _:genid3421 . _:genid3421 . "H-Score for peptide phosphorylation site location."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1001986"^^ . "H-Score"^^ . _:genid3422 . _:genid3422 . _:genid3422 . _:genid3422 "H-Score for peptide phosphorylation site location."^^ . _:genid3422 "DOI:10.1021/pr1006813"^^ . _:genid3422 "PMID:20836569"^^ . _:genid3423 . _:genid3423 . _:genid3423 . _:genid3423 "value-type:xsd:string"^^ . _:genid3423 "The allowed value-type for this CV term."^^ . . . "Vacuum-drying MALDI sample preparation crystallization method."^^ . "MS"^^ . "MS:1001987"^^ . "vacuum drying MALDI sample preparation"^^ . _:genid3424 . _:genid3424 . _:genid3424 . _:genid3424 "Vacuum-drying MALDI sample preparation crystallization method."^^ . _:genid3424 "PSI:MS"^^ . . . "Crushed-crystal MALDI sample preparation method."^^ . "MS"^^ . "MS:1001988"^^ . "crushed crystal MALDI sample preparation"^^ . _:genid3425 . _:genid3425 . _:genid3425 . _:genid3425 "Crushed-crystal MALDI sample preparation method."^^ . _:genid3425 "PSI:MS"^^ . . . "Fast-evaporation MALDI sample preparation method."^^ . "MS"^^ . "MS:1001989"^^ . "fast evaporation MALDI sample preparation"^^ . _:genid3426 . _:genid3426 . _:genid3426 . _:genid3426 "Fast-evaporation MALDI sample preparation method."^^ . _:genid3426 "DOI:10.1021/ac00091a044"^^ . . . "Overlayer method combining features of the crushed-crystal method and the fast-evaporation method."^^ . "MS"^^ . "MS:1001990"^^ . "overlayer MALDI sample preparation"^^ . _:genid3427 . _:genid3427 . _:genid3427 . _:genid3427 "Overlayer method combining features of the crushed-crystal method and the fast-evaporation method."^^ . _:genid3427 "PSI:MS"^^ . . . "Sandwich MALDI sample preparation method."^^ . "MS"^^ . "MS:1001991"^^ . "sandwich MALDI sample preparation"^^ . _:genid3428 . _:genid3428 . _:genid3428 . _:genid3428 "Sandwich MALDI sample preparation method."^^ . _:genid3428 "DOI:10.1002/(SICI)1096-9888(199706)32:6<593::AID-JMS511>3.3.CO;2-4"^^ . . . "Spin coating MALDI sample preparation method."^^ . "MS"^^ . "MS:1001992"^^ . "spin coating MALDI sample preparation"^^ . _:genid3429 . _:genid3429 . _:genid3429 . _:genid3429 "Spin coating MALDI sample preparation method."^^ . _:genid3429 "DOI:10.1021/cc0500710"^^ . _:genid3429 "PMID:16283807"^^ . . . "Quick & dirty (Q&D) sample preparation separating matrix handling from sample handling."^^ . "MS"^^ . "MS:1001993"^^ . "quick and dirty MALDI sample preparation"^^ . _:genid3430 . _:genid3430 . _:genid3430 . _:genid3430 "Quick & dirty (Q&D) sample preparation separating matrix handling from sample handling."^^ . _:genid3430 "PSI:MS"^^ . . . "Top-hat morphological filter based on the basic morphological operations 'erosion' and 'dilatation'."^^ . "MS"^^ . "MS:1001994"^^ . "top hat baseline reduction"^^ . _:genid3431 . _:genid3431 . _:genid3431 . _:genid3431 "Top-hat morphological filter based on the basic morphological operations 'erosion' and 'dilatation'."^^ . _:genid3431 "PSI:MS"^^ . . . "Constructs the baseline by fitting multiple parabolas to the spectrum starting with the large scale structures."^^ . "MS"^^ . "MS:1001995"^^ . "convex hull baseline reduction"^^ . _:genid3432 . _:genid3432 . _:genid3432 . _:genid3432 "Constructs the baseline by fitting multiple parabolas to the spectrum starting with the large scale structures."^^ . _:genid3432 "PSI:MS"^^ . . . "The spectrum that will be baseline subtracted is divided into a number of segments."^^ . "MS"^^ . "MS:1001996"^^ . "median baseline reduction"^^ . _:genid3433 . _:genid3433 . _:genid3433 . _:genid3433 "The spectrum that will be baseline subtracted is divided into a number of segments."^^ . _:genid3433 "PSI:MS"^^ . . . "The random noise is removed by using the undecimated wavelet transform."^^ . "MS"^^ . "MS:1001997"^^ . "wavelet transformation smoothing"^^ . _:genid3434 . _:genid3434 . _:genid3434 . _:genid3434 "The random noise is removed by using the undecimated wavelet transform."^^ . _:genid3434 "DOI:10.1093/bioinformatics/btl355"^^ . _:genid3434 "PMID:16820428"^^ . . . "It searches for known patterns in the measured spectrum."^^ . "SNAP"^^ . "MS"^^ . "MS:1001998"^^ . "sophisticated numerical annotation procedure"^^ . _:genid3435 . _:genid3435 . _:genid3435 . _:genid3435 "It searches for known patterns in the measured spectrum."^^ . _:genid3435 "DOI:10.1021/ac951158i"^^ . _:genid3435 "PMID:21619291"^^ . . . "Normalization of areas below the curves."^^ . "MS"^^ . "MS:1001999"^^ . "area normalization"^^ . _:genid3436 . _:genid3436 . _:genid3436 . _:genid3436 "Normalization of areas below the curves."^^ . _:genid3436 "PSI:MS"^^ . . . "A Bruker's proprietary technique where molecular ions are initially accelerated at lower energy, then collide with inert gas in a collision cell that is then 'lifted' to high potential. The use of inert gas is optional, as it could lift also fragments provided by LID."^^ . "MS"^^ . "MS:1002000"^^ . "LIFT"^^ . _:genid3437 . _:genid3437 . _:genid3437 . _:genid3437 "A Bruker's proprietary technique where molecular ions are initially accelerated at lower energy, then collide with inert gas in a collision cell that is then 'lifted' to high potential. The use of inert gas is optional, as it could lift also fragments provided by LID."^^ . _:genid3437 "DOI:10.1007/s00216-003-2057-0"^^ . _:genid3437 "PMID:12830354"^^ . . . _:genid3438 . _:genid3438 . _:genid3438 . _:genid3438 . "MS1 label-based raw feature quantitation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002001"^^ . "MS1 label-based raw feature quantitation"^^ . _:genid3439 . _:genid3439 . _:genid3439 . _:genid3439 "MS1 label-based raw feature quantitation."^^ . _:genid3439 "PSI:PI"^^ . _:genid3440 . _:genid3440 . _:genid3440 . _:genid3440 "value-type:xsd:boolean"^^ . _:genid3440 "The allowed value-type for this CV term."^^ . . . _:genid3441 . _:genid3441 . _:genid3441 . _:genid3441 . "MS1 label-based peptide level quantitation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002002"^^ . "MS1 label-based peptide level quantitation"^^ . _:genid3442 . _:genid3442 . _:genid3442 . _:genid3442 "MS1 label-based peptide level quantitation."^^ . _:genid3442 "PSI:PI"^^ . _:genid3443 . _:genid3443 . _:genid3443 . _:genid3443 "value-type:xsd:boolean"^^ . _:genid3443 "The allowed value-type for this CV term."^^ . . . _:genid3444 . _:genid3444 . _:genid3444 . _:genid3444 . "MS1 label-based protein level quantitation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002003"^^ . "MS1 label-based protein level quantitation"^^ . _:genid3445 . _:genid3445 . _:genid3445 . _:genid3445 "MS1 label-based protein level quantitation."^^ . _:genid3445 "PSI:PI"^^ . _:genid3446 . _:genid3446 . _:genid3446 . _:genid3446 "value-type:xsd:boolean"^^ . _:genid3446 "The allowed value-type for this CV term."^^ . . . _:genid3447 . _:genid3447 . _:genid3447 . _:genid3447 . "MS1 label-based proteingroup level quantitation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002004"^^ . "MS1 label-based proteingroup level quantitation"^^ . _:genid3448 . _:genid3448 . _:genid3448 . _:genid3448 "MS1 label-based proteingroup level quantitation."^^ . _:genid3448 "PSI:PI"^^ . _:genid3449 . _:genid3449 . _:genid3449 . _:genid3449 "value-type:xsd:boolean"^^ . _:genid3449 "The allowed value-type for this CV term."^^ . . . "A de facto standard providing the retention times at which a specific set of 10 reference peptides exit the reference chromatographic column. The kit may be obtain from Biognosys."^^ . "MS"^^ . "MS:1002005"^^ . "iRT retention time normalization standard"^^ . _:genid3450 . _:genid3450 . _:genid3450 . _:genid3450 "A de facto standard providing the retention times at which a specific set of 10 reference peptides exit the reference chromatographic column. The kit may be obtain from Biognosys."^^ . _:genid3450 "DOI:10.1002/pmic.201100463"^^ . _:genid3450 "http://www.biognosys.ch/products/rt-kit.html"^^ . . _:genid3451 . _:genid3451 . _:genid3451 . _:genid3451 . "The type of the transitions, e.g. target or decoy."^^ . "MRM transition type"^^ . "MS"^^ . "MS:1002006"^^ . "SRM transition type"^^ . _:genid3452 . _:genid3452 . _:genid3452 . _:genid3452 "The type of the transitions, e.g. target or decoy."^^ . _:genid3452 "PSI:MS"^^ . . . "A transition used to target a specific compound that may be in the sample."^^ . "target MRM transition"^^ . "MS"^^ . "MS:1002007"^^ . "target SRM transition"^^ . _:genid3453 . _:genid3453 . _:genid3453 . _:genid3453 "A transition used to target a specific compound that may be in the sample."^^ . _:genid3453 "PSI:MS"^^ . . . "A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows."^^ . "decoy MRM transition"^^ . "MS"^^ . "MS:1002008"^^ . "decoy SRM transition"^^ . _:genid3454 . _:genid3454 . _:genid3454 . _:genid3454 "A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows."^^ . _:genid3454 "PSI:MS"^^ . . . "Quantitation analysis using an isobaric labelling workflow."^^ . "MS"^^ . "MS:1002009"^^ . "isobaric label quantitation analysis"^^ . _:genid3455 . _:genid3455 . _:genid3455 . _:genid3455 "Quantitation analysis using an isobaric labelling workflow."^^ . _:genid3455 "PSI:PI"^^ . . . "Quantitation analysis using the Thermo Fisher amine-reactive tandem mass tag (TMT) labelling workflow, wherein 2-10 reporter ions are measured in MS2 spectra in the 126-131 m/z."^^ . "MS"^^ . "MS:1002010"^^ . "TMT quantitation analysis"^^ . _:genid3456 . _:genid3456 . _:genid3456 . _:genid3456 "Quantitation analysis using the Thermo Fisher amine-reactive tandem mass tag (TMT) labelling workflow, wherein 2-10 reporter ions are measured in MS2 spectra in the 126-131 m/z."^^ . _:genid3456 "PMID:12713048"^^ . _:genid3456 "PSI:PI"^^ . . . "Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure."^^ . "DESI"^^ . "MS"^^ . "MS:1002011"^^ . "desorption electrospray ionization"^^ . _:genid3457 . _:genid3457 . _:genid3457 . _:genid3457 "Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure."^^ . _:genid3457 "DOI:10.1126/science.1104404"^^ . _:genid3457 "PMID:15486296"^^ . . . _:genid3458 . _:genid3458 . _:genid3458 . _:genid3458 . _:genid3459 . _:genid3459 . _:genid3459 . _:genid3459 . "Relative probability that PTM site assignment is correct, derived from the Mascot score difference between matches to the same spectrum (Mascot Delta Score)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002012"^^ . "Mascot:PTM site assignment confidence"^^ . _:genid3460 . _:genid3460 . _:genid3460 . _:genid3460 "Relative probability that PTM site assignment is correct, derived from the Mascot score difference between matches to the same spectrum (Mascot Delta Score)."^^ . _:genid3460 "http://www.matrixscience.com/help/pt_mods_help.html#SITE"^^ . _:genid3461 . _:genid3461 . _:genid3461 . _:genid3461 "value-type:xsd:string"^^ . _:genid3461 "The allowed value-type for this CV term."^^ . . . _:genid3462 . _:genid3462 . _:genid3462 . _:genid3462 . _:genid3463 . _:genid3463 . _:genid3463 . _:genid3463 . "Collision energy at the start of the collision energy ramp."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002013"^^ . "collision energy ramp start"^^ . _:genid3464 . _:genid3464 . _:genid3464 . _:genid3464 "Collision energy at the start of the collision energy ramp."^^ . _:genid3464 "PSI:PI"^^ . _:genid3465 . _:genid3465 . _:genid3465 . _:genid3465 "value-type:xsd:float"^^ . _:genid3465 "The allowed value-type for this CV term."^^ . . . _:genid3466 . _:genid3466 . _:genid3466 . _:genid3466 . _:genid3467 . _:genid3467 . _:genid3467 . _:genid3467 . "Collision energy at the end of the collision energy ramp."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002014"^^ . "collision energy ramp end"^^ . _:genid3468 . _:genid3468 . _:genid3468 . _:genid3468 "Collision energy at the end of the collision energy ramp."^^ . _:genid3468 "PSI:PI"^^ . _:genid3469 . _:genid3469 . _:genid3469 . _:genid3469 "value-type:xsd:float"^^ . _:genid3469 "The allowed value-type for this CV term."^^ . . . _:genid3470 . _:genid3470 . _:genid3470 . _:genid3470 . "Spectral count peptide level quantitation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002015"^^ . "spectral count peptide level quantitation"^^ . _:genid3471 . _:genid3471 . _:genid3471 . _:genid3471 "Spectral count peptide level quantitation."^^ . _:genid3471 "PSI:PI"^^ . _:genid3472 . _:genid3472 . _:genid3472 . _:genid3472 "value-type:xsd:boolean"^^ . _:genid3472 "The allowed value-type for this CV term."^^ . . . _:genid3473 . _:genid3473 . _:genid3473 . _:genid3473 . "Spectral count protein level quantitation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002016"^^ . "spectral count protein level quantitation"^^ . _:genid3474 . _:genid3474 . _:genid3474 . _:genid3474 "Spectral count protein level quantitation."^^ . _:genid3474 "PSI:PI"^^ . _:genid3475 . _:genid3475 . _:genid3475 . _:genid3475 "value-type:xsd:boolean"^^ . _:genid3475 "The allowed value-type for this CV term."^^ . . . _:genid3476 . _:genid3476 . _:genid3476 . _:genid3476 . "Spectral count proteingroup level quantitation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002017"^^ . "spectral count proteingroup level quantitation"^^ . _:genid3477 . _:genid3477 . _:genid3477 . _:genid3477 "Spectral count proteingroup level quantitation."^^ . _:genid3477 "PSI:PI"^^ . _:genid3478 . _:genid3478 . _:genid3478 . _:genid3478 "value-type:xsd:boolean"^^ . _:genid3478 "The allowed value-type for this CV term."^^ . . . "MS1 label-based analysis."^^ . "MS"^^ . "MS:1002018"^^ . "MS1 label-based analysis"^^ . _:genid3479 . _:genid3479 . _:genid3479 . _:genid3479 "MS1 label-based analysis."^^ . _:genid3479 "PSI:PI"^^ . . . _:genid3480 . _:genid3480 . _:genid3480 . _:genid3480 . "Label-free raw feature quantitation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002019"^^ . "label-free raw feature quantitation"^^ . _:genid3481 . _:genid3481 . _:genid3481 . _:genid3481 "Label-free raw feature quantitation."^^ . _:genid3481 "PSI:PI"^^ . _:genid3482 . _:genid3482 . _:genid3482 . _:genid3482 "value-type:xsd:boolean"^^ . _:genid3482 "The allowed value-type for this CV term."^^ . . . _:genid3483 . _:genid3483 . _:genid3483 . _:genid3483 . "Label-free peptide level quantitation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002020"^^ . "label-free peptide level quantitation"^^ . _:genid3484 . _:genid3484 . _:genid3484 . _:genid3484 "Label-free peptide level quantitation."^^ . _:genid3484 "PSI:PI"^^ . _:genid3485 . _:genid3485 . _:genid3485 . _:genid3485 "value-type:xsd:boolean"^^ . _:genid3485 "The allowed value-type for this CV term."^^ . . . _:genid3486 . _:genid3486 . _:genid3486 . _:genid3486 . "Label-free protein level quantitation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002021"^^ . "label-free protein level quantitation"^^ . _:genid3487 . _:genid3487 . _:genid3487 . _:genid3487 "Label-free protein level quantitation."^^ . _:genid3487 "PSI:PI"^^ . _:genid3488 . _:genid3488 . _:genid3488 . _:genid3488 "value-type:xsd:boolean"^^ . _:genid3488 "The allowed value-type for this CV term."^^ . . . _:genid3489 . _:genid3489 . _:genid3489 . _:genid3489 . "Label-free proteingroup level quantitation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002022"^^ . "label-free proteingroup level quantitation"^^ . _:genid3490 . _:genid3490 . _:genid3490 . _:genid3490 "Label-free proteingroup level quantitation."^^ . _:genid3490 "PSI:PI"^^ . _:genid3491 . _:genid3491 . _:genid3491 . _:genid3491 "value-type:xsd:boolean"^^ . _:genid3491 "The allowed value-type for this CV term."^^ . . . "MS2 tag-based analysis."^^ . "MS"^^ . "MS:1002023"^^ . "MS2 tag-based analysis"^^ . _:genid3492 . _:genid3492 . _:genid3492 . _:genid3492 "MS2 tag-based analysis."^^ . _:genid3492 "PSI:PI"^^ . . . _:genid3493 . _:genid3493 . _:genid3493 . _:genid3493 . "MS2 tag-based feature level quantitation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002024"^^ . "MS2 tag-based feature level quantitation"^^ . _:genid3494 . _:genid3494 . _:genid3494 . _:genid3494 "MS2 tag-based feature level quantitation."^^ . _:genid3494 "PSI:PI"^^ . _:genid3495 . _:genid3495 . _:genid3495 . _:genid3495 "value-type:xsd:boolean"^^ . _:genid3495 "The allowed value-type for this CV term."^^ . . . _:genid3496 . _:genid3496 . _:genid3496 . _:genid3496 . "MS2 tag-based peptide level quantitation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002025"^^ . "MS2 tag-based peptide level quantitation"^^ . _:genid3497 . _:genid3497 . _:genid3497 . _:genid3497 "MS2 tag-based peptide level quantitation."^^ . _:genid3497 "PSI:PI"^^ . _:genid3498 . _:genid3498 . _:genid3498 . _:genid3498 "value-type:xsd:boolean"^^ . _:genid3498 "The allowed value-type for this CV term."^^ . . . _:genid3499 . _:genid3499 . _:genid3499 . _:genid3499 . "MS2 tag-based protein level quantitation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002026"^^ . "MS2 tag-based protein level quantitation"^^ . _:genid3500 . _:genid3500 . _:genid3500 . _:genid3500 "MS2 tag-based protein level quantitation."^^ . _:genid3500 "PSI:PI"^^ . _:genid3501 . _:genid3501 . _:genid3501 . _:genid3501 "value-type:xsd:boolean"^^ . _:genid3501 "The allowed value-type for this CV term."^^ . . . _:genid3502 . _:genid3502 . _:genid3502 . _:genid3502 . "MS2 tag-based proteingroup level quantitation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002027"^^ . "MS2 tag-based proteingroup level quantitation"^^ . _:genid3503 . _:genid3503 . _:genid3503 . _:genid3503 "MS2 tag-based proteingroup level quantitation."^^ . _:genid3503 "PSI:PI"^^ . _:genid3504 . _:genid3504 . _:genid3504 . _:genid3504 "value-type:xsd:boolean"^^ . _:genid3504 "The allowed value-type for this CV term."^^ . . . _:genid3505 . _:genid3505 . _:genid3505 . _:genid3505 . "Nucleic acid base modification (substitution, insertion or deletion)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002028"^^ . "nucleic acid base modification"^^ . _:genid3506 . _:genid3506 . _:genid3506 . _:genid3506 "Nucleic acid base modification (substitution, insertion or deletion)."^^ . _:genid3506 "PSI:PI"^^ . _:genid3507 . _:genid3507 . _:genid3507 . _:genid3507 "value-type:xsd:string"^^ . _:genid3507 "The allowed value-type for this CV term."^^ . . . _:genid3508 . _:genid3508 . _:genid3508 . _:genid3508 . "Specification of the original nucleic acid sequence, prior to a modification. The value slot should hold the DNA or RNA sequence."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002029"^^ . "original nucleic acid sequence"^^ . _:genid3509 . _:genid3509 . _:genid3509 . _:genid3509 "Specification of the original nucleic acid sequence, prior to a modification. The value slot should hold the DNA or RNA sequence."^^ . _:genid3509 "PSI:PI"^^ . _:genid3510 . _:genid3510 . _:genid3510 . _:genid3510 "value-type:xsd:string"^^ . _:genid3510 "The allowed value-type for this CV term."^^ . . . _:genid3511 . _:genid3511 . _:genid3511 . _:genid3511 . "Specification of the modified nucleic acid sequence. The value slot should hold the DNA or RNA sequence."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002030"^^ . "modified nucleic acid sequence"^^ . _:genid3512 . _:genid3512 . _:genid3512 . _:genid3512 "Specification of the modified nucleic acid sequence. The value slot should hold the DNA or RNA sequence."^^ . _:genid3512 "PSI:PI"^^ . _:genid3513 . _:genid3513 . _:genid3513 . _:genid3513 "value-type:xsd:string"^^ . _:genid3513 "The allowed value-type for this CV term."^^ . . . _:genid3514 . _:genid3514 . _:genid3514 . _:genid3514 . "URI to retrieve transition group data for a PASSEL (PeptideAtlas SRM Experiment Library) experiment."^^ . "value-type:xsd:anyURI"^^ . "MS"^^ . "MS:1002031"^^ . "PASSEL transition group browser URI"^^ . _:genid3515 . _:genid3515 . _:genid3515 . _:genid3515 "URI to retrieve transition group data for a PASSEL (PeptideAtlas SRM Experiment Library) experiment."^^ . _:genid3515 "PSI:PI"^^ . _:genid3516 . _:genid3516 . _:genid3516 . _:genid3516 "value-type:xsd:anyURI"^^ . _:genid3516 "The allowed value-type for this CV term."^^ . . . _:genid3517 . _:genid3517 . _:genid3517 . _:genid3517 . "URI that allows access to a PeptideAtlas dataset."^^ . "value-type:xsd:anyURI"^^ . "MS"^^ . "MS:1002032"^^ . "PeptideAtlas dataset URI"^^ . _:genid3518 . _:genid3518 . _:genid3518 . _:genid3518 "URI that allows access to a PeptideAtlas dataset."^^ . _:genid3518 "PSI:PI"^^ . _:genid3519 . _:genid3519 . _:genid3519 . _:genid3519 "value-type:xsd:anyURI"^^ . _:genid3519 "The allowed value-type for this CV term."^^ . . . "Role of the contact person."^^ . "MS"^^ . "MS:1002033"^^ . "contact role"^^ . _:genid3520 . _:genid3520 . _:genid3520 . _:genid3520 "Role of the contact person."^^ . _:genid3520 "PSI:PI"^^ . . . "The first of a set of authors associated with a publication or release. There may be more than one first author in cases where several authors share primary attribution."^^ . "MS"^^ . "MS:1002034"^^ . "first author"^^ . _:genid3521 . _:genid3521 . _:genid3521 . _:genid3521 "The first of a set of authors associated with a publication or release. There may be more than one first author in cases where several authors share primary attribution."^^ . _:genid3521 "PSI:MS"^^ . . . "The last of a set of authors associated with a publication or release. There may be more than one senior author in cases where several authors share senior attribution."^^ . "MS"^^ . "MS:1002035"^^ . "senior author"^^ . _:genid3522 . _:genid3522 . _:genid3522 . _:genid3522 "The last of a set of authors associated with a publication or release. There may be more than one senior author in cases where several authors share senior attribution."^^ . _:genid3522 "PSI:MS"^^ . . . "One of a set of authors associated with a publication or release."^^ . "MS"^^ . "MS:1002036"^^ . "co-author"^^ . _:genid3523 . _:genid3523 . _:genid3523 . _:genid3523 "One of a set of authors associated with a publication or release."^^ . _:genid3523 "PSI:MS"^^ . . . "A person who submits a dataset to a repository."^^ . "MS"^^ . "MS:1002037"^^ . "dataset submitter"^^ . _:genid3524 . _:genid3524 . _:genid3524 . _:genid3524 "A person who submits a dataset to a repository."^^ . _:genid3524 "PSI:MS"^^ . . . "A sample that has not been labelled or modified. This is often referred to as \"light\" to distinguish from \"heavy\"."^^ . "light sample"^^ . "MS"^^ . "MS:1002038"^^ . "label free sample"^^ . _:genid3525 . _:genid3525 . _:genid3525 . _:genid3525 "A sample that has not been labelled or modified. This is often referred to as \"light\" to distinguish from \"heavy\"."^^ . _:genid3525 "PSI:PI"^^ . . . _:genid3526 . _:genid3526 . _:genid3526 . _:genid3526 . "Inlet properties that are associated with a value."^^ . "MS"^^ . "MS:1002039"^^ . "inlet attribute"^^ . _:genid3527 . _:genid3527 . _:genid3527 . _:genid3527 "Inlet properties that are associated with a value."^^ . _:genid3527 "PSI:MS"^^ . . . . _:genid3528 . _:genid3528 . _:genid3528 . _:genid3528 . _:genid3529 . _:genid3529 . _:genid3529 . _:genid3529 . _:genid3530 . _:genid3530 . _:genid3530 . _:genid3530 . "The temperature of the inlet of a mass spectrometer."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002040"^^ . "inlet temperature"^^ . _:genid3531 . _:genid3531 . _:genid3531 . _:genid3531 "The temperature of the inlet of a mass spectrometer."^^ . _:genid3531 "PSI:MS"^^ . _:genid3532 . _:genid3532 . _:genid3532 . _:genid3532 "value-type:xsd:float"^^ . _:genid3532 "The allowed value-type for this CV term."^^ . . . _:genid3533 . _:genid3533 . _:genid3533 . _:genid3533 . _:genid3534 . _:genid3534 . _:genid3534 . _:genid3534 . _:genid3535 . _:genid3535 . _:genid3535 . _:genid3535 . "The temperature of the source of a mass spectrometer."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002041"^^ . "source temperature"^^ . _:genid3536 . _:genid3536 . _:genid3536 . _:genid3536 "The temperature of the source of a mass spectrometer."^^ . _:genid3536 "PSI:MS"^^ . _:genid3537 . _:genid3537 . _:genid3537 . _:genid3537 "value-type:xsd:float"^^ . _:genid3537 "The allowed value-type for this CV term."^^ . . . _:genid3538 . _:genid3538 . _:genid3538 . _:genid3538 . _:genid3539 . _:genid3539 . _:genid3539 . _:genid3539 . _:genid3540 . _:genid3540 . _:genid3540 . _:genid3540 . "The duration of a complete cycle of modulation in a comprehensive two-dimensional separation system, equals the length of a second dimension chromatogram, i.e., the time between two successive injections into the second column."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002042"^^ . "modulation time"^^ . _:genid3541 . _:genid3541 . _:genid3541 . _:genid3541 "The duration of a complete cycle of modulation in a comprehensive two-dimensional separation system, equals the length of a second dimension chromatogram, i.e., the time between two successive injections into the second column."^^ . _:genid3541 "http://chromatographyonline.findanalytichem.com/lcgc/Column:+Coupling+Matters/Nomenclature-and-Conventions-in-Comprehensive-Mult/ArticleStandard/Article/detail/58429"^^ . _:genid3542 . _:genid3542 . _:genid3542 . _:genid3542 "value-type:xsd:string"^^ . _:genid3542 "The allowed value-type for this CV term."^^ . . . "ProteinProspector software for data acquisition and analysis."^^ . "MS"^^ . "MS:1002043"^^ . "ProteinProspector"^^ . _:genid3543 . _:genid3543 . _:genid3543 . _:genid3543 "ProteinProspector software for data acquisition and analysis."^^ . _:genid3543 "PSI:PI"^^ . . . _:genid3544 . _:genid3544 . _:genid3544 . _:genid3544 . "The ProteinProspector result 'Score'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002044"^^ . "ProteinProspector:score"^^ . _:genid3545 . _:genid3545 . _:genid3545 . _:genid3545 "The ProteinProspector result 'Score'."^^ . _:genid3545 "PSI:PI"^^ . _:genid3546 . _:genid3546 . _:genid3546 . _:genid3546 "value-type:xsd:double"^^ . _:genid3546 "The allowed value-type for this CV term."^^ . . . _:genid3547 . _:genid3547 . _:genid3547 . _:genid3547 . "The ProteinProspector result 'Expectation value'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002045"^^ . "ProteinProspector:expectation value"^^ . _:genid3548 . _:genid3548 . _:genid3548 . _:genid3548 "The ProteinProspector result 'Expectation value'."^^ . _:genid3548 "PSI:PI"^^ . _:genid3549 . _:genid3549 . _:genid3549 . _:genid3549 "value-type:xsd:double"^^ . _:genid3549 "The allowed value-type for this CV term."^^ . . . _:genid3550 . _:genid3550 . _:genid3550 . _:genid3550 . "The original source path used for directory-based sources."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002046"^^ . "native source path"^^ . _:genid3551 . _:genid3551 . _:genid3551 . _:genid3551 "The original source path used for directory-based sources."^^ . _:genid3551 "PSI:MS"^^ . _:genid3552 . _:genid3552 . _:genid3552 . _:genid3552 "value-type:xsd:string"^^ . _:genid3552 "The allowed value-type for this CV term."^^ . . . "MS-GF software used to re-score the peptide-spectrum matches."^^ . "MS"^^ . "MS:1002047"^^ . "MS-GF"^^ . _:genid3553 . _:genid3553 . _:genid3553 . _:genid3553 "MS-GF software used to re-score the peptide-spectrum matches."^^ . _:genid3553 "DOI:10.1074/mcp.M110.003731"^^ . _:genid3553 "PMID:20829449"^^ . . . "MS-GF+ software used to analyze the spectra."^^ . "MS-GFDB"^^ . "MS"^^ . "MS:1002048"^^ . "MS-GF+"^^ . _:genid3554 . _:genid3554 . _:genid3554 . _:genid3554 "MS-GF+ software used to analyze the spectra."^^ . _:genid3554 "PSI:PI"^^ . . . _:genid3555 . _:genid3555 . _:genid3555 . _:genid3555 . "MS-GF raw score."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002049"^^ . "MS-GF:RawScore"^^ . _:genid3556 . _:genid3556 . _:genid3556 . _:genid3556 "MS-GF raw score."^^ . _:genid3556 "PSI:PI"^^ . _:genid3557 . _:genid3557 . _:genid3557 . _:genid3557 "value-type:xsd:int"^^ . _:genid3557 "The allowed value-type for this CV term."^^ . . . _:genid3558 . _:genid3558 . _:genid3558 . _:genid3558 . "MS-GF de novo score."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002050"^^ . "MS-GF:DeNovoScore"^^ . _:genid3559 . _:genid3559 . _:genid3559 . _:genid3559 "MS-GF de novo score."^^ . _:genid3559 "PSI:PI"^^ . _:genid3560 . _:genid3560 . _:genid3560 . _:genid3560 "value-type:xsd:int"^^ . _:genid3560 "The allowed value-type for this CV term."^^ . . . _:genid3561 . _:genid3561 . _:genid3561 . _:genid3561 . "MS-GF energy score."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1002051"^^ . "MS-GF:Energy"^^ . _:genid3562 . _:genid3562 . _:genid3562 . _:genid3562 "MS-GF energy score."^^ . _:genid3562 "PSI:PI"^^ . _:genid3563 . _:genid3563 . _:genid3563 . _:genid3563 "value-type:xsd:nonNegativeInteger"^^ . _:genid3563 "The allowed value-type for this CV term."^^ . . . . _:genid3564 . _:genid3564 . _:genid3564 . _:genid3564 . _:genid3565 . _:genid3565 . _:genid3565 . _:genid3565 . "MS-GF spectral E-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002052"^^ . "MS-GF:SpecEValue"^^ . _:genid3566 . _:genid3566 . _:genid3566 . _:genid3566 "MS-GF spectral E-value."^^ . _:genid3566 "PSI:PI"^^ . _:genid3567 . _:genid3567 . _:genid3567 . _:genid3567 "value-type:xsd:double"^^ . _:genid3567 "The allowed value-type for this CV term."^^ . . . . _:genid3568 . _:genid3568 . _:genid3568 . _:genid3568 . _:genid3569 . _:genid3569 . _:genid3569 . _:genid3569 . "MS-GF E-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002053"^^ . "MS-GF:EValue"^^ . _:genid3570 . _:genid3570 . _:genid3570 . _:genid3570 "MS-GF E-value."^^ . _:genid3570 "PSI:PI"^^ . _:genid3571 . _:genid3571 . _:genid3571 . _:genid3571 "value-type:xsd:double"^^ . _:genid3571 "The allowed value-type for this CV term."^^ . . . . _:genid3572 . _:genid3572 . _:genid3572 . _:genid3572 . "MS-GF Q-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002054"^^ . "MS-GF:QValue"^^ . _:genid3573 . _:genid3573 . _:genid3573 . _:genid3573 "MS-GF Q-value."^^ . _:genid3573 "PSI:PI"^^ . _:genid3574 . _:genid3574 . _:genid3574 . _:genid3574 "value-type:xsd:double"^^ . _:genid3574 "The allowed value-type for this CV term."^^ . . . _:genid3575 . _:genid3575 . _:genid3575 . _:genid3575 . "MS-GF peptide-level Q-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002055"^^ . "MS-GF:PepQValue"^^ . _:genid3576 . _:genid3576 . _:genid3576 . _:genid3576 "MS-GF peptide-level Q-value."^^ . _:genid3576 "PSI:PI"^^ . _:genid3577 . _:genid3577 . _:genid3577 . _:genid3577 "value-type:xsd:double"^^ . _:genid3577 "The allowed value-type for this CV term."^^ . . . _:genid3578 . _:genid3578 . _:genid3578 . _:genid3578 . "MS-GF posterior error probability."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002056"^^ . "MS-GF:PEP"^^ . _:genid3579 . _:genid3579 . _:genid3579 . _:genid3579 "MS-GF posterior error probability."^^ . _:genid3579 "PSI:PI"^^ . _:genid3580 . _:genid3580 . _:genid3580 . _:genid3580 "value-type:xsd:double"^^ . _:genid3580 "The allowed value-type for this CV term."^^ . . . "As parameter for search engine: apply the modification only at the N-terminus of a protein."^^ . "MS"^^ . "MS:1002057"^^ . "modification specificity protein N-term"^^ . _:genid3581 . _:genid3581 . _:genid3581 . _:genid3581 "As parameter for search engine: apply the modification only at the N-terminus of a protein."^^ . _:genid3581 "PSI:PI"^^ . . . "As parameter for search engine: apply the modification only at the C-terminus of a protein."^^ . "MS"^^ . "MS:1002058"^^ . "modification specificity protein C-term"^^ . _:genid3582 . _:genid3582 . _:genid3582 . _:genid3582 "As parameter for search engine: apply the modification only at the C-terminus of a protein."^^ . _:genid3582 "PSI:PI"^^ . . . "Microsoft Excel (can be used for spectral counting)."^^ . "MS"^^ . "MS:1002059"^^ . "Microsoft Excel"^^ . _:genid3583 . _:genid3583 . _:genid3583 . _:genid3583 "Microsoft Excel (can be used for spectral counting)."^^ . _:genid3583 "PSI:PI"^^ . . . "The name of the UniProtKB/TrEMBL database."^^ . "MS"^^ . "MS:1002060"^^ . "database UniProtKB/TrEMBL"^^ . _:genid3584 . _:genid3584 . _:genid3584 . _:genid3584 "The name of the UniProtKB/TrEMBL database."^^ . _:genid3584 "PSI:PI"^^ . . "OBSOLETE Decoy database from a TrEMBL protein sequence database."^^ . "MS"^^ . "MS:1002061"^^ . "This term was made obsolete, because a combination of database name, DB composition , decoy DB type , decoy DB generation algorithm, decoy DB accession regexp and decoy DB details suffices."^^ . "decoy DB from UniProtKB/TrEMBL"^^ . "true"^^ . _:genid3585 . _:genid3585 . _:genid3585 . _:genid3585 "OBSOLETE Decoy database from a TrEMBL protein sequence database."^^ . _:genid3585 "PSI:PI"^^ . . . "Metabolic labelling: natural N (mainly 14N)."^^ . "MS"^^ . "MS:1002062"^^ . "metabolic labelling: natural N (mainly 14N)"^^ . _:genid3586 . _:genid3586 . _:genid3586 . _:genid3586 "Metabolic labelling: natural N (mainly 14N)."^^ . _:genid3586 "PSI:PI"^^ . . . "Software e.g. for SILAC and 14N/15N workflow, part of the PeakQuant suite."^^ . "MS"^^ . "MS:1002063"^^ . "FindPairs"^^ . _:genid3587 . _:genid3587 . _:genid3587 . _:genid3587 "Software e.g. for SILAC and 14N/15N workflow, part of the PeakQuant suite."^^ . _:genid3587 "http://www.medizinisches-proteom-center.de/software"^^ . . . _:genid3588 . _:genid3588 . _:genid3588 . _:genid3588 . "Peptide consensus retention time."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002064"^^ . "peptide consensus RT"^^ . _:genid3589 . _:genid3589 . _:genid3589 . _:genid3589 "Peptide consensus retention time."^^ . _:genid3589 "PSI:PI"^^ . _:genid3590 . _:genid3590 . _:genid3590 . _:genid3590 "value-type:xsd:double"^^ . _:genid3590 "The allowed value-type for this CV term."^^ . . . _:genid3591 . _:genid3591 . _:genid3591 . _:genid3591 . "Peptide consensus mass/charge ratio."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002065"^^ . "peptide consensus m/z"^^ . _:genid3592 . _:genid3592 . _:genid3592 . _:genid3592 "Peptide consensus mass/charge ratio."^^ . _:genid3592 "PSI:PI"^^ . _:genid3593 . _:genid3593 . _:genid3593 . _:genid3593 "value-type:xsd:double"^^ . _:genid3593 "The allowed value-type for this CV term."^^ . . . _:genid3594 . _:genid3594 . _:genid3594 . _:genid3594 . "Method used to calculate the ratio."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002066"^^ . "ratio calculation method"^^ . _:genid3595 . _:genid3595 . _:genid3595 . _:genid3595 "Method used to calculate the ratio."^^ . _:genid3595 "PSI:PI"^^ . _:genid3596 . _:genid3596 . _:genid3596 . _:genid3596 "value-type:xsd:double"^^ . _:genid3596 "The allowed value-type for this CV term."^^ . . . _:genid3597 . _:genid3597 . _:genid3597 . _:genid3597 . "Protein quantification value calculated as median of peptide ratios."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002067"^^ . "protein value: median of peptide ratios"^^ . _:genid3598 . _:genid3598 . _:genid3598 . _:genid3598 "Protein quantification value calculated as median of peptide ratios."^^ . _:genid3598 "PSI:PI"^^ . _:genid3599 . _:genid3599 . _:genid3599 . _:genid3599 "value-type:xsd:double"^^ . _:genid3599 "The allowed value-type for this CV term."^^ . . . "Metabolic labelling: heavy N (mainly 15N)."^^ . "MS"^^ . "MS:1002068"^^ . "metabolic labelling: heavy N (mainly 15N)"^^ . _:genid3600 . _:genid3600 . _:genid3600 . _:genid3600 "Metabolic labelling: heavy N (mainly 15N)."^^ . _:genid3600 "PSI:PI"^^ . . . _:genid3601 . _:genid3601 . _:genid3601 . _:genid3601 . "Metabolic labelling: Description of labelling purity. Usually the purity of feeding material (e.g. 95%), or the inclusion rate derived from isotopic peak pattern shape."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002069"^^ . "metabolic labelling purity"^^ . _:genid3602 . _:genid3602 . _:genid3602 . _:genid3602 "Metabolic labelling: Description of labelling purity. Usually the purity of feeding material (e.g. 95%), or the inclusion rate derived from isotopic peak pattern shape."^^ . _:genid3602 "PSI:PI"^^ . _:genid3603 . _:genid3603 . _:genid3603 . _:genid3603 "value-type:xsd:string"^^ . _:genid3603 "The allowed value-type for this CV term."^^ . . . _:genid3604 . _:genid3604 . _:genid3604 . _:genid3604 . "Perform a t-test (two groups). Specify in string value, whether paired / unpaired, variance equal / different, one- / two-sided version is performed."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002070"^^ . "t-test"^^ . _:genid3605 . _:genid3605 . _:genid3605 . _:genid3605 "Perform a t-test (two groups). Specify in string value, whether paired / unpaired, variance equal / different, one- / two-sided version is performed."^^ . _:genid3605 "PSI:PI"^^ . _:genid3606 . _:genid3606 . _:genid3606 . _:genid3606 "value-type:xsd:string"^^ . _:genid3606 "The allowed value-type for this CV term."^^ . . . _:genid3607 . _:genid3607 . _:genid3607 . _:genid3607 . "Perform an ANOVA-test (more than two groups). Specify in string value, which version is performed."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002071"^^ . "ANOVA-test"^^ . _:genid3608 . _:genid3608 . _:genid3608 . _:genid3608 "Perform an ANOVA-test (more than two groups). Specify in string value, which version is performed."^^ . _:genid3608 "PSI:PI"^^ . _:genid3609 . _:genid3609 . _:genid3609 . _:genid3609 "value-type:xsd:string"^^ . _:genid3609 "The allowed value-type for this CV term."^^ . . . _:genid3610 . _:genid3610 . _:genid3610 . _:genid3610 . _:genid3611 . _:genid3611 . _:genid3611 . _:genid3611 . "P-value as result of one of the processing steps described. Specify in the description, which processing step it was."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002072"^^ . "p-value"^^ . _:genid3612 . _:genid3612 . _:genid3612 . _:genid3612 "P-value as result of one of the processing steps described. Specify in the description, which processing step it was."^^ . _:genid3612 "PSI:PI"^^ . _:genid3613 . _:genid3613 . _:genid3613 . _:genid3613 "value-type:xsd:double"^^ . _:genid3613 "The allowed value-type for this CV term."^^ . . . "The mzIdentML format for peptide and protein identification data from the PSI. File extension '.mzid'."^^ . "MS"^^ . "MS:1002073"^^ . "mzIdentML format"^^ . _:genid3614 . _:genid3614 . _:genid3614 . _:genid3614 "The mzIdentML format for peptide and protein identification data from the PSI. File extension '.mzid'."^^ . _:genid3614 "PSI:PI"^^ . _:genid3614 "http://www.psidev.info/mzidentml"^^ . . . "File format containing quantification results."^^ . "MS"^^ . "MS:1002074"^^ . "quantification file format"^^ . _:genid3615 . _:genid3615 . _:genid3615 . _:genid3615 "File format containing quantification results."^^ . _:genid3615 "PSI:PI"^^ . . . "The mzQuantML format for quantification data from the PSI. File extension '.mzq'."^^ . "MS"^^ . "MS:1002075"^^ . "mzQuantML format"^^ . _:genid3616 . _:genid3616 . _:genid3616 . _:genid3616 "The mzQuantML format for quantification data from the PSI. File extension '.mzq'."^^ . _:genid3616 "PSI:PI"^^ . _:genid3616 "http://www.psidev.info/mzquantml"^^ . . . "PAnalyzer software for getting protein evidence categories."^^ . "MS"^^ . "MS:1002076"^^ . "PAnalyzer"^^ . _:genid3617 . _:genid3617 . _:genid3617 . _:genid3617 "PAnalyzer software for getting protein evidence categories."^^ . _:genid3617 "http://code.google.com/p/ehu-bio/wiki/PAnalyzer"^^ . . . "Bruker Daltonics' impact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^ . "MS"^^ . "MS:1002077"^^ . "impact"^^ . _:genid3618 . _:genid3618 . _:genid3618 . _:genid3618 "Bruker Daltonics' impact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^ . _:genid3618 "PSI:MS"^^ . . . _:genid3619 . _:genid3619 . _:genid3619 . _:genid3619 . "OBSOLETE ProteomeDiscoverer's 1st static post-translational modification (PTM) input parameter."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002078"^^ . "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Static Modification (MS:1001645) instead."^^ . "ProteomeDiscoverer:1. Static Modification"^^ . "true"^^ . _:genid3620 . _:genid3620 . _:genid3620 . _:genid3620 "OBSOLETE ProteomeDiscoverer's 1st static post-translational modification (PTM) input parameter."^^ . _:genid3620 "PSI:PI"^^ . _:genid3621 . _:genid3621 . _:genid3621 . _:genid3621 "value-type:xsd:string"^^ . _:genid3621 "The allowed value-type for this CV term."^^ . . . _:genid3622 . _:genid3622 . _:genid3622 . _:genid3622 . "OBSOLETE ProteomeDiscoverer's 2nd static post-translational modification (PTM) input parameter."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002079"^^ . "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Static Modification (MS:1001645) instead."^^ . "ProteomeDiscoverer:2. Static Modification"^^ . "true"^^ . _:genid3623 . _:genid3623 . _:genid3623 . _:genid3623 "OBSOLETE ProteomeDiscoverer's 2nd static post-translational modification (PTM) input parameter."^^ . _:genid3623 "PSI:PI"^^ . _:genid3624 . _:genid3624 . _:genid3624 . _:genid3624 "value-type:xsd:string"^^ . _:genid3624 "The allowed value-type for this CV term."^^ . . . _:genid3625 . _:genid3625 . _:genid3625 . _:genid3625 . _:genid3626 . _:genid3626 . _:genid3626 . _:genid3626 . "Precursor clipping range before."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002080"^^ . "ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Before"^^ . _:genid3627 . _:genid3627 . _:genid3627 . _:genid3627 "Precursor clipping range before."^^ . _:genid3627 "PSI:MS"^^ . _:genid3628 . _:genid3628 . _:genid3628 . _:genid3628 "value-type:xsd:double"^^ . _:genid3628 "The allowed value-type for this CV term."^^ . . . _:genid3629 . _:genid3629 . _:genid3629 . _:genid3629 . _:genid3630 . _:genid3630 . _:genid3630 . _:genid3630 . "Precursor clipping range after."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002081"^^ . "ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range After"^^ . _:genid3631 . _:genid3631 . _:genid3631 . _:genid3631 "Precursor clipping range after."^^ . _:genid3631 "PSI:MS"^^ . _:genid3632 . _:genid3632 . _:genid3632 . _:genid3632 "value-type:xsd:double"^^ . _:genid3632 "The allowed value-type for this CV term."^^ . . . _:genid3633 . _:genid3633 . _:genid3633 . _:genid3633 . _:genid3634 . _:genid3634 . _:genid3634 . _:genid3634 . _:genid3635 . _:genid3635 . _:genid3635 . _:genid3635 . "The time of elution from the first chromatographic column in the chromatographic separation step, relative to the start of chromatography on the first column."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002082"^^ . "first column elution time"^^ . _:genid3636 . _:genid3636 . _:genid3636 . _:genid3636 "The time of elution from the first chromatographic column in the chromatographic separation step, relative to the start of chromatography on the first column."^^ . _:genid3636 "PSI:MS"^^ . _:genid3637 . _:genid3637 . _:genid3637 . _:genid3637 "value-type:xsd:float"^^ . _:genid3637 "The allowed value-type for this CV term."^^ . . . _:genid3638 . _:genid3638 . _:genid3638 . _:genid3638 . _:genid3639 . _:genid3639 . _:genid3639 . _:genid3639 . _:genid3640 . _:genid3640 . _:genid3640 . _:genid3640 . "The time of elution from the second chromatographic column in the chromatographic separation step, relative to the start of the chromatography on the second column."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002083"^^ . "second column elution time"^^ . _:genid3641 . _:genid3641 . _:genid3641 . _:genid3641 "The time of elution from the second chromatographic column in the chromatographic separation step, relative to the start of the chromatography on the second column."^^ . _:genid3641 "PSI:MS"^^ . _:genid3642 . _:genid3642 . _:genid3642 . _:genid3642 "value-type:xsd:float"^^ . _:genid3642 "The allowed value-type for this CV term."^^ . . . "Multidimensional chromatography modulation description."^^ . "MS"^^ . "MS:1002084"^^ . "multidimensional chromatography modulation description"^^ . _:genid3643 . _:genid3643 . _:genid3643 . _:genid3643 "Multidimensional chromatography modulation description."^^ . _:genid3643 "PSI:MS"^^ . . . "Two-dimensional gas chromatography where a single modulation time is used throughout the acquisition."^^ . "MS"^^ . "MS:1002085"^^ . "two-dimensional gas chromatography with fixed modulation time"^^ . _:genid3644 . _:genid3644 . _:genid3644 . _:genid3644 "Two-dimensional gas chromatography where a single modulation time is used throughout the acquisition."^^ . _:genid3644 "PSI:MS"^^ . . . "Two-dimensional gas chromatography where the acquisition is divided into steps, each with a different modulation time."^^ . "MS"^^ . "MS:1002086"^^ . "two-dimensional gas chromatography with discrete modulation time steps"^^ . _:genid3645 . _:genid3645 . _:genid3645 . _:genid3645 "Two-dimensional gas chromatography where the acquisition is divided into steps, each with a different modulation time."^^ . _:genid3645 "PSI:MS"^^ . . . "Two-dimensional liquid chromatography where a single modulation time is used throughout the acquisition."^^ . "MS"^^ . "MS:1002087"^^ . "two-dimensional liquid chromatography with fixed modulation time"^^ . _:genid3646 . _:genid3646 . _:genid3646 . _:genid3646 "Two-dimensional liquid chromatography where a single modulation time is used throughout the acquisition."^^ . _:genid3646 "PSI:MS"^^ . . . "Two-dimensional liquid chromatography where the acquisition is divided into steps, each with a different modulation time."^^ . "MS"^^ . "MS:1002088"^^ . "two-dimensional liquid chromatography with discrete modulation time steps"^^ . _:genid3647 . _:genid3647 . _:genid3647 . _:genid3647 "Two-dimensional liquid chromatography where the acquisition is divided into steps, each with a different modulation time."^^ . _:genid3647 "PSI:MS"^^ . . . _:genid3648 . _:genid3648 . _:genid3648 . _:genid3648 . "XCorr threshold for storing peptides that do not belong to a protein."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002089"^^ . "ProteomeDiscoverer:Peptide Without Protein XCorr Threshold"^^ . _:genid3649 . _:genid3649 . _:genid3649 . _:genid3649 "XCorr threshold for storing peptides that do not belong to a protein."^^ . _:genid3649 "PSI:MS"^^ . _:genid3650 . _:genid3650 . _:genid3650 . _:genid3650 "value-type:xsd:float"^^ . _:genid3650 "The allowed value-type for this CV term."^^ . . . _:genid3651 . _:genid3651 . _:genid3651 . _:genid3651 . "Flag indicating that a probability score for the assessment that a reported peptide match is a random occurrence is calculated."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002090"^^ . "Calculate Probability Scores"^^ . _:genid3652 . _:genid3652 . _:genid3652 . _:genid3652 "Flag indicating that a probability score for the assessment that a reported peptide match is a random occurrence is calculated."^^ . _:genid3652 "PSI:MS"^^ . _:genid3653 . _:genid3653 . _:genid3653 . _:genid3653 "value-type:xsd:boolean"^^ . _:genid3653 "The allowed value-type for this CV term."^^ . . . _:genid3654 . _:genid3654 . _:genid3654 . _:genid3654 . "Delta Cn threshold for filtering out PSM's."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002091"^^ . "ProteomeDiscoverer:Maximum Delta Cn"^^ . _:genid3655 . _:genid3655 . _:genid3655 . _:genid3655 "Delta Cn threshold for filtering out PSM's."^^ . _:genid3655 "PSI:MS"^^ . _:genid3656 . _:genid3656 . _:genid3656 . _:genid3656 "value-type:xsd:float"^^ . _:genid3656 "The allowed value-type for this CV term."^^ . . . _:genid3657 . _:genid3657 . _:genid3657 . _:genid3657 . "Algorithm (e.g. q-value or PEP) used for calculation of the validation score using Percolator."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002092"^^ . "Percolator:Validation based on"^^ . _:genid3658 . _:genid3658 . _:genid3658 . _:genid3658 "Algorithm (e.g. q-value or PEP) used for calculation of the validation score using Percolator."^^ . _:genid3658 "PSI:MS"^^ . _:genid3659 . _:genid3659 . _:genid3659 . _:genid3659 "value-type:xsd:string"^^ . _:genid3659 "The allowed value-type for this CV term."^^ . . . "Search engine input parameter."^^ . "MS"^^ . "MS:1002093"^^ . "search engine input parameter"^^ . _:genid3660 . _:genid3660 . _:genid3660 . _:genid3660 "Search engine input parameter."^^ . _:genid3660 "PSI:PI"^^ . . . "Search engine input parameter that is shared by more than one search engine."^^ . "MS"^^ . "MS:1002094"^^ . "common search engine input parameter"^^ . _:genid3661 . _:genid3661 . _:genid3661 . _:genid3661 "Search engine input parameter that is shared by more than one search engine."^^ . _:genid3661 "PSI:PI"^^ . . . "Search engine input parameters specific to Mascot."^^ . "MS"^^ . "MS:1002095"^^ . "Mascot input parameter"^^ . _:genid3662 . _:genid3662 . _:genid3662 . _:genid3662 "Search engine input parameters specific to Mascot."^^ . _:genid3662 "PSI:PI"^^ . _:genid3662 "source:http://www.matrixscience.com/help/search_field_help.html"^^ . . . "Search engine input parameters specific to SEQUEST."^^ . "MS"^^ . "MS:1002096"^^ . "SEQUEST input parameter"^^ . _:genid3663 . _:genid3663 . _:genid3663 . _:genid3663 "Search engine input parameters specific to SEQUEST."^^ . _:genid3663 "PSI:PI"^^ . _:genid3663 "source:http://fields.scripps.edu/sequest/parameters.html"^^ . . . "Search engine input parameters specific to Phenyx."^^ . "MS"^^ . "MS:1002097"^^ . "Phenyx input parameter"^^ . _:genid3664 . _:genid3664 . _:genid3664 . _:genid3664 "Search engine input parameters specific to Phenyx."^^ . _:genid3664 "PSI:PI"^^ . . . "Search engine input parameters specific to ProteinExtractor."^^ . "MS"^^ . "MS:1002098"^^ . "ProteinExtractor input parameter"^^ . _:genid3665 . _:genid3665 . _:genid3665 . _:genid3665 "Search engine input parameters specific to ProteinExtractor."^^ . _:genid3665 "PSI:PI"^^ . . . "Search engine input parameters specific to OMSSA."^^ . "MS"^^ . "MS:1002099"^^ . "OMSSA input parameter"^^ . _:genid3666 . _:genid3666 . _:genid3666 . _:genid3666 "Search engine input parameters specific to OMSSA."^^ . _:genid3666 "PSI:PI"^^ . . . "Search engine input parameters specific to ProteinScape."^^ . "MS"^^ . "MS:1002100"^^ . "ProteinScape input parameter"^^ . _:genid3667 . _:genid3667 . _:genid3667 . _:genid3667 "Search engine input parameters specific to ProteinScape."^^ . _:genid3667 "PSI:PI"^^ . . . "Search engine input parameters specific to ProteomeDiscoverer."^^ . "MS"^^ . "MS:1002101"^^ . "ProteomeDiscoverer input parameter"^^ . _:genid3668 . _:genid3668 . _:genid3668 . _:genid3668 "Search engine input parameters specific to ProteomeDiscoverer."^^ . _:genid3668 "PSI:PI"^^ . . . "Software input parameters."^^ . "MS"^^ . "MS:1002103"^^ . "software input parameter"^^ . _:genid3669 . _:genid3669 . _:genid3669 . _:genid3669 "Software input parameters."^^ . _:genid3669 "PSI:PI"^^ . . . "Software input parameter that is shared by more than one software."^^ . "MS"^^ . "MS:1002104"^^ . "common software input parameter"^^ . _:genid3670 . _:genid3670 . _:genid3670 . _:genid3670 "Software input parameter that is shared by more than one software."^^ . _:genid3670 "PSI:PI"^^ . . . "Software specific input parameter."^^ . "MS"^^ . "MS:1002105"^^ . "software specific input parameter"^^ . _:genid3671 . _:genid3671 . _:genid3671 . _:genid3671 "Software specific input parameter."^^ . _:genid3671 "PSI:PI"^^ . . . "Search engine input parameters specific to Scaffold."^^ . "MS"^^ . "MS:1002106"^^ . "Scaffold input parameter"^^ . _:genid3672 . _:genid3672 . _:genid3672 . _:genid3672 "Search engine input parameters specific to Scaffold."^^ . _:genid3672 "PSI:PI"^^ . . . "Search engine input parameters specific to Percolator."^^ . "MS"^^ . "MS:1002107"^^ . "Percolator input parameter"^^ . _:genid3673 . _:genid3673 . _:genid3673 . _:genid3673 "Search engine input parameters specific to Percolator."^^ . _:genid3673 "PSI:PI"^^ . . _:genid3674 . _:genid3674 . _:genid3674 . _:genid3674 . "Indicates that a higher score is better."^^ . "MS"^^ . "MS:1002108"^^ . "higher score better"^^ . _:genid3675 . _:genid3675 . _:genid3675 . _:genid3675 "Indicates that a higher score is better."^^ . _:genid3675 "PSI:PI"^^ . . _:genid3676 . _:genid3676 . _:genid3676 . _:genid3676 . "Indicates that a lower score is better."^^ . "MS"^^ . "MS:1002109"^^ . "lower score better"^^ . _:genid3677 . _:genid3677 . _:genid3677 . _:genid3677 "Indicates that a lower score is better."^^ . _:genid3677 "PSI:PI"^^ . . . "Attribute describing an assay."^^ . "MS"^^ . "MS:1002110"^^ . "assay attribute"^^ . _:genid3678 . _:genid3678 . _:genid3678 . _:genid3678 "Attribute describing an assay."^^ . _:genid3678 "PSI:PI"^^ . . . "Attribute describing an assay label."^^ . "MS"^^ . "MS:1002111"^^ . "assay label attribute"^^ . _:genid3679 . _:genid3679 . _:genid3679 . _:genid3679 "Attribute describing an assay label."^^ . _:genid3679 "PSI:PI"^^ . . . "Attribute describing a protein group list."^^ . "MS"^^ . "MS:1002112"^^ . "protein group list attribute"^^ . _:genid3680 . _:genid3680 . _:genid3680 . _:genid3680 "Attribute describing a protein group list."^^ . _:genid3680 "PSI:PI"^^ . . . "Attribute describing a protein group."^^ . "MS"^^ . "MS:1002113"^^ . "protein group attribute"^^ . _:genid3681 . _:genid3681 . _:genid3681 . _:genid3681 "Attribute describing a protein group."^^ . _:genid3681 "PSI:PI"^^ . . . "Attribute describing a protein list."^^ . "MS"^^ . "MS:1002114"^^ . "protein list attribute"^^ . _:genid3682 . _:genid3682 . _:genid3682 . _:genid3682 "Attribute describing a protein list."^^ . _:genid3682 "PSI:PI"^^ . . . "Attribute describing a peptide consensus list."^^ . "MS"^^ . "MS:1002115"^^ . "peptide consensus list attribute"^^ . _:genid3683 . _:genid3683 . _:genid3683 . _:genid3683 "Attribute describing a peptide consensus list."^^ . _:genid3683 "PSI:PI"^^ . . . "Attribute describing a peptide consensus."^^ . "MS"^^ . "MS:1002116"^^ . "peptide consensus attribute"^^ . _:genid3684 . _:genid3684 . _:genid3684 . _:genid3684 "Attribute describing a peptide consensus."^^ . _:genid3684 "PSI:PI"^^ . . . "Attribute describing a small molecule list."^^ . "MS"^^ . "MS:1002117"^^ . "small molecule list attribute"^^ . _:genid3685 . _:genid3685 . _:genid3685 . _:genid3685 "Attribute describing a small molecule list."^^ . _:genid3685 "PSI:PI"^^ . . . "Attribute describing a small molecule."^^ . "MS"^^ . "MS:1002118"^^ . "small molecule attribute"^^ . _:genid3686 . _:genid3686 . _:genid3686 . _:genid3686 "Attribute describing a small molecule."^^ . _:genid3686 "PSI:PI"^^ . . . "Attribute describing a small molecule modification."^^ . "MS"^^ . "MS:1002119"^^ . "small molecule modification attribute"^^ . _:genid3687 . _:genid3687 . _:genid3687 . _:genid3687 "Attribute describing a small molecule modification."^^ . _:genid3687 "PSI:PI"^^ . . . "The name for identifying an experiment."^^ . "MS"^^ . "MS:1002120"^^ . "experiment name"^^ . _:genid3688 . _:genid3688 . _:genid3688 . _:genid3688 "The name for identifying an experiment."^^ . _:genid3688 "PSI:PI"^^ . . . "Dummy decribing a spectral count feature."^^ . "MS"^^ . "MS:1002121"^^ . "spectral count feature"^^ . _:genid3689 . _:genid3689 . _:genid3689 . _:genid3689 "Dummy decribing a spectral count feature."^^ . _:genid3689 "PSI:PI"^^ . . . "FeatureList of spectral counts."^^ . "MS"^^ . "MS:1002122"^^ . "counts reporting"^^ . _:genid3690 . _:genid3690 . _:genid3690 . _:genid3690 "FeatureList of spectral counts."^^ . _:genid3690 "PSI:PI"^^ . . . "X-Tracker generic tool for quantitative proteomics."^^ . "MS"^^ . "MS:1002123"^^ . "x-Tracker"^^ . _:genid3691 . _:genid3691 . _:genid3691 . _:genid3691 "X-Tracker generic tool for quantitative proteomics."^^ . _:genid3691 "https://bessantlab.org/software/x-tracker/"^^ . . . "ProteoSuite software for the analysis of quantitative proteomics data."^^ . "MS"^^ . "MS:1002124"^^ . "ProteoSuite"^^ . _:genid3692 . _:genid3692 . _:genid3692 . _:genid3692 "ProteoSuite software for the analysis of quantitative proteomics data."^^ . _:genid3692 "DOI:10.1089/omi.2012.0022"^^ . _:genid3692 "PMID:22804616"^^ . _:genid3692 "http://www.proteosuite.org/"^^ . . . . _:genid3693 . _:genid3693 . _:genid3693 . _:genid3693 . "OBSOLETE FDRScore values specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002125"^^ . "This term was made obsolete because it was split into the more specific terms for PSM-level combined FDRScore (MS:1002356), distinct peptide-level combined FDRScore (MS:1002361), protein-level combined FDRScore (MS:1002366) and protein group-level combined FDRScore (MS:1002375)."^^ . "combined FDRScore"^^ . "true"^^ . _:genid3694 . _:genid3694 . _:genid3694 . _:genid3694 "OBSOLETE FDRScore values specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^ . _:genid3694 "PMID:19253293"^^ . _:genid3695 . _:genid3695 . _:genid3695 . _:genid3695 "value-type:xsd:double"^^ . _:genid3695 "The allowed value-type for this CV term."^^ . . . "The name of the UniProtKB knowledgebase."^^ . "MS"^^ . "MS:1002126"^^ . "database UniProtKB"^^ . _:genid3696 . _:genid3696 . _:genid3696 . _:genid3696 "The name of the UniProtKB knowledgebase."^^ . _:genid3696 "PSI:PI"^^ . . . "Attribute describing an identification file."^^ . "MS"^^ . "MS:1002127"^^ . "identification file attribute"^^ . _:genid3697 . _:genid3697 . _:genid3697 . _:genid3697 "Attribute describing an identification file."^^ . _:genid3697 "PSI:PI"^^ . . . "Attribute describing a method file format."^^ . "MS"^^ . "MS:1002128"^^ . "method file format"^^ . _:genid3698 . _:genid3698 . _:genid3698 . _:genid3698 "Attribute describing a method file format."^^ . _:genid3698 "PSI:PI"^^ . . . . "Software for iTRAQ workflow. Extracts and normalizes iTRAQ information from an MS experiment."^^ . "MS"^^ . "MS:1002129"^^ . "ITRAQAnalyzer"^^ . _:genid3699 . _:genid3699 . _:genid3699 . _:genid3699 "Software for iTRAQ workflow. Extracts and normalizes iTRAQ information from an MS experiment."^^ . _:genid3699 "http://www-bs2.informatik.uni-tuebingen.de/services/OpenMS/OpenMS-release/html/TOPP__ITRAQAnalyzer.html"^^ . . . "Attribute describing an identification file format."^^ . "MS"^^ . "MS:1002130"^^ . "identification file format"^^ . _:genid3700 . _:genid3700 . _:genid3700 . _:genid3700 "Attribute describing an identification file format."^^ . _:genid3700 "PSI:PI"^^ . . . "Noise filter component of the TOPP software."^^ . "MS"^^ . "MS:1002131"^^ . "TOPP noise filter"^^ . _:genid3701 . _:genid3701 . _:genid3701 . _:genid3701 "Noise filter component of the TOPP software."^^ . _:genid3701 "PSI:PI"^^ . . . "Removes noise from profile spectra by using a gaussian smoothing."^^ . "MS"^^ . "MS:1002132"^^ . "TOPP NoiseFilterGaussian"^^ . _:genid3702 . _:genid3702 . _:genid3702 . _:genid3702 "Removes noise from profile spectra by using a gaussian smoothing."^^ . _:genid3702 "PSI:PI"^^ . . . "Removes noise from profile spectra by using a Savitzky-Golay smoothing."^^ . "MS"^^ . "MS:1002133"^^ . "TOPP NoiseFilterSGolay"^^ . _:genid3703 . _:genid3703 . _:genid3703 . _:genid3703 "Removes noise from profile spectra by using a Savitzky-Golay smoothing."^^ . _:genid3703 "PSI:PI"^^ . . . "Peak picker component of the TOPP software."^^ . "MS"^^ . "MS:1002134"^^ . "TOPP peak picker"^^ . _:genid3704 . _:genid3704 . _:genid3704 . _:genid3704 "Peak picker component of the TOPP software."^^ . _:genid3704 "PSI:PI"^^ . . . "Finds mass spectrometric peaks in high-resoluted profile mass spectra."^^ . "MS"^^ . "MS:1002135"^^ . "TOPP PeakPickerHiRes"^^ . _:genid3705 . _:genid3705 . _:genid3705 . _:genid3705 "Finds mass spectrometric peaks in high-resoluted profile mass spectra."^^ . _:genid3705 "PSI:PI"^^ . . . "Finds mass spectrometric peaks with a wavelet algorithm in low-resoluted profile mass spectra."^^ . "MS"^^ . "MS:1002136"^^ . "TOPP PeakPickerWavelet"^^ . _:genid3706 . _:genid3706 . _:genid3706 . _:genid3706 "Finds mass spectrometric peaks with a wavelet algorithm in low-resoluted profile mass spectra."^^ . _:genid3706 "PSI:PI"^^ . . . "Spectra filter component of the TOPP software."^^ . "MS"^^ . "MS:1002137"^^ . "TOPP spectra filter"^^ . _:genid3707 . _:genid3707 . _:genid3707 . _:genid3707 "Spectra filter component of the TOPP software."^^ . _:genid3707 "PSI:PI"^^ . . . "Applies a Bern et al normalization to peak spectra."^^ . "MS"^^ . "MS:1002138"^^ . "TOPP SpectraFilterBernNorm"^^ . _:genid3708 . _:genid3708 . _:genid3708 . _:genid3708 "Applies a Bern et al normalization to peak spectra."^^ . _:genid3708 "DOI:10.1093/bioinformatics/bth947"^^ . _:genid3708 "PMID:15262780"^^ . . . "Applies a filter to peak spectra for marked peaks."^^ . "MS"^^ . "MS:1002139"^^ . "TOPP SpectraFilterMarkerMower"^^ . _:genid3709 . _:genid3709 . _:genid3709 . _:genid3709 "Applies a filter to peak spectra for marked peaks."^^ . _:genid3709 "PSI:PI"^^ . . . "Retains the n largest peaks of a peak spectra."^^ . "MS"^^ . "MS:1002140"^^ . "TOPP SpectraFilterNLargest"^^ . _:genid3710 . _:genid3710 . _:genid3710 . _:genid3710 "Retains the n largest peaks of a peak spectra."^^ . _:genid3710 "PSI:PI"^^ . . . "Applies a TIC/maximal intensity normalization to peak spectra."^^ . "MS"^^ . "MS:1002141"^^ . "TOPP SpectraFilterNormalizer"^^ . _:genid3711 . _:genid3711 . _:genid3711 . _:genid3711 "Applies a TIC/maximal intensity normalization to peak spectra."^^ . _:genid3711 "PSI:PI"^^ . . . "Filters putative unfragmented precursor ions from tandem spectra."^^ . "MS"^^ . "MS:1002142"^^ . "TOPP SpectraFilterParentPeakMower"^^ . _:genid3712 . _:genid3712 . _:genid3712 . _:genid3712 "Filters putative unfragmented precursor ions from tandem spectra."^^ . _:genid3712 "PSI:PI"^^ . . . "Applies a filter to peak spectra after intensity scaling according to rank."^^ . "MS"^^ . "MS:1002143"^^ . "TOPP SpectraFilterScaler"^^ . _:genid3713 . _:genid3713 . _:genid3713 . _:genid3713 "Applies a filter to peak spectra after intensity scaling according to rank."^^ . _:genid3713 "PSI:PI"^^ . . . "Applies a filter to peak spectra after intensity scaling to the square root."^^ . "MS"^^ . "MS:1002144"^^ . "TOPP SpectraFilterSqrtMower"^^ . _:genid3714 . _:genid3714 . _:genid3714 . _:genid3714 "Applies a filter to peak spectra after intensity scaling to the square root."^^ . _:genid3714 "PSI:PI"^^ . . . "Applies a filter of peaks below a given threshold to peak spectra."^^ . "MS"^^ . "MS:1002145"^^ . "TOPP SpectraFilterThresholdMower"^^ . _:genid3715 . _:genid3715 . _:genid3715 . _:genid3715 "Applies a filter of peaks below a given threshold to peak spectra."^^ . _:genid3715 "PSI:PI"^^ . . . "Applies a filter of the largest peaks in a sliding window over a peak spectrum."^^ . "MS"^^ . "MS:1002146"^^ . "TOPP SpectraFilterWindowMower"^^ . _:genid3716 . _:genid3716 . _:genid3716 . _:genid3716 "Applies a filter of the largest peaks in a sliding window over a peak spectrum."^^ . _:genid3716 "PSI:PI"^^ . . . "Map aligner component of the TOPP software."^^ . "MS"^^ . "MS:1002147"^^ . "TOPP map aligner"^^ . _:genid3717 . _:genid3717 . _:genid3717 . _:genid3717 "Map aligner component of the TOPP software."^^ . _:genid3717 "PSI:PI"^^ . . . "Corrects retention time distortions between maps based on common peptide identifications."^^ . "MS"^^ . "MS:1002148"^^ . "TOPP MapAlignerIdentification"^^ . _:genid3718 . _:genid3718 . _:genid3718 . _:genid3718 "Corrects retention time distortions between maps based on common peptide identifications."^^ . _:genid3718 "PSI:PI"^^ . . . "Corrects retention time distortions between maps using a pose clustering approach."^^ . "MS"^^ . "MS:1002149"^^ . "TOPP MapAlignerPoseClustering"^^ . _:genid3719 . _:genid3719 . _:genid3719 . _:genid3719 "Corrects retention time distortions between maps using a pose clustering approach."^^ . _:genid3719 "PSI:PI"^^ . . . "Corrects retention time distortions between maps by spectrum alignment."^^ . "MS"^^ . "MS:1002150"^^ . "TOPP MapAlignerSpectrum"^^ . _:genid3720 . _:genid3720 . _:genid3720 . _:genid3720 "Corrects retention time distortions between maps by spectrum alignment."^^ . _:genid3720 "PSI:PI"^^ . . . "Attribute describing the data type of the numerator of a ratio."^^ . "MS"^^ . "MS:1002151"^^ . "numerator data type attribute"^^ . _:genid3721 . _:genid3721 . _:genid3721 . _:genid3721 "Attribute describing the data type of the numerator of a ratio."^^ . _:genid3721 "PSI:PI"^^ . . . "Attribute describing the data type of the denominator of a ratio."^^ . "MS"^^ . "MS:1002152"^^ . "denominator data type attribute"^^ . _:genid3722 . _:genid3722 . _:genid3722 . _:genid3722 "Attribute describing the data type of the denominator of a ratio."^^ . _:genid3722 "PSI:PI"^^ . . . _:genid3723 . _:genid3723 . _:genid3723 . _:genid3723 . "The number of spectra identified for this protein in spectral counting."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002153"^^ . "protein level PSM counts"^^ . _:genid3724 . _:genid3724 . _:genid3724 . _:genid3724 "The number of spectra identified for this protein in spectral counting."^^ . _:genid3724 "PSI:PI"^^ . _:genid3725 . _:genid3725 . _:genid3725 . _:genid3725 "value-type:xsd:int"^^ . _:genid3725 "The allowed value-type for this CV term."^^ . . . "Extracts spectra of an MS run file to several files in DTA format."^^ . "MS"^^ . "MS:1002154"^^ . "TOPP DTAExtractor"^^ . _:genid3726 . _:genid3726 . _:genid3726 . _:genid3726 "Extracts spectra of an MS run file to several files in DTA format."^^ . _:genid3726 "PSI:PI"^^ . . . "Merges several protein/peptide identification files into one file."^^ . "MS"^^ . "MS:1002155"^^ . "TOPP IDMerger"^^ . _:genid3727 . _:genid3727 . _:genid3727 . _:genid3727 "Merges several protein/peptide identification files into one file."^^ . _:genid3727 "PSI:PI"^^ . . . "Converts identification engine file formats."^^ . "MS"^^ . "MS:1002156"^^ . "TOPP IDFileConverter"^^ . _:genid3728 . _:genid3728 . _:genid3728 . _:genid3728 "Converts identification engine file formats."^^ . _:genid3728 "PSI:PI"^^ . . . "Merges spectra from an LC/MS map, either by precursor or by RT blocks."^^ . "MS"^^ . "MS:1002157"^^ . "TOPP SpectraMerger"^^ . _:genid3729 . _:genid3729 . _:genid3729 . _:genid3729 "Merges spectra from an LC/MS map, either by precursor or by RT blocks."^^ . _:genid3729 "PSI:PI"^^ . . . "Exports various XML formats to an mzTab file."^^ . "MS"^^ . "MS:1002158"^^ . "TOPP MzTabExporter"^^ . _:genid3730 . _:genid3730 . _:genid3730 . _:genid3730 "Exports various XML formats to an mzTab file."^^ . _:genid3730 "PSI:PI"^^ . . . "Annotates mass traces in centroided LC/MS maps."^^ . "MS"^^ . "MS:1002159"^^ . "TOPP MassTraceExtractor"^^ . _:genid3731 . _:genid3731 . _:genid3731 . _:genid3731 "Annotates mass traces in centroided LC/MS maps."^^ . _:genid3731 "PSI:PI"^^ . . . "Correct the precursor entries of tandem MS scans."^^ . "MS"^^ . "MS:1002160"^^ . "TOPP PrecursorMassCorrector"^^ . _:genid3732 . _:genid3732 . _:genid3732 . _:genid3732 "Correct the precursor entries of tandem MS scans."^^ . _:genid3732 "PSI:PI"^^ . . . "Performs precursor mz correction on centroided high resolution data."^^ . "MS"^^ . "MS:1002161"^^ . "TOPP HighResPrecursorMassCorrector"^^ . _:genid3733 . _:genid3733 . _:genid3733 . _:genid3733 "Performs precursor mz correction on centroided high resolution data."^^ . _:genid3733 "PSI:PI"^^ . . . "Computes an additive series to quantify a peptide in a set of samples."^^ . "MS"^^ . "MS:1002162"^^ . "TOPP AdditiveSeries"^^ . _:genid3734 . _:genid3734 . _:genid3734 . _:genid3734 "Computes an additive series to quantify a peptide in a set of samples."^^ . _:genid3734 "PSI:PI"^^ . . . "Decharges and merges different feature charge variants of the same chemical entity."^^ . "MS"^^ . "MS:1002163"^^ . "TOPP Decharger"^^ . _:genid3735 . _:genid3735 . _:genid3735 . _:genid3735 "Decharges and merges different feature charge variants of the same chemical entity."^^ . _:genid3735 "PSI:PI"^^ . . . "Quantifies signals at given positions in (raw or picked) LC/MS maps."^^ . "MS"^^ . "MS:1002164"^^ . "TOPP EICExtractor"^^ . _:genid3736 . _:genid3736 . _:genid3736 . _:genid3736 "Quantifies signals at given positions in (raw or picked) LC/MS maps."^^ . _:genid3736 "PSI:PI"^^ . . . "Feature finder component of the TOPP software."^^ . "MS"^^ . "MS:1002165"^^ . "TOPP feature finder"^^ . _:genid3737 . _:genid3737 . _:genid3737 . _:genid3737 "Feature finder component of the TOPP software."^^ . _:genid3737 "PSI:PI"^^ . . . "Detects two-dimensional features in centroided LC-MS data."^^ . "MS"^^ . "MS:1002166"^^ . "TOPP FeatureFinderCentroided"^^ . _:genid3738 . _:genid3738 . _:genid3738 . _:genid3738 "Detects two-dimensional features in centroided LC-MS data."^^ . _:genid3738 "PSI:PI"^^ . . . "Detects two-dimensional features in uncentroided LC-MS data."^^ . "MS"^^ . "MS:1002167"^^ . "TOPP FeatureFinderRaw"^^ . _:genid3739 . _:genid3739 . _:genid3739 . _:genid3739 "Detects two-dimensional features in uncentroided LC-MS data."^^ . _:genid3739 "PSI:PI"^^ . . . "Detects two-dimensional features in uncentroided LC-MS data with a wavelet algorithm."^^ . "MS"^^ . "MS:1002168"^^ . "TOPP FeatureFinderIsotopeWavelet"^^ . _:genid3740 . _:genid3740 . _:genid3740 . _:genid3740 "Detects two-dimensional features in uncentroided LC-MS data with a wavelet algorithm."^^ . _:genid3740 "PSI:PI"^^ . . . "Detects two-dimensional features in centroided LC-MS data of metabolites."^^ . "MS"^^ . "MS:1002169"^^ . "TOPP FeatureFinderMetabo"^^ . _:genid3741 . _:genid3741 . _:genid3741 . _:genid3741 "Detects two-dimensional features in centroided LC-MS data of metabolites."^^ . _:genid3741 "PSI:PI"^^ . . . "Quantifies features LC-MS/MS MRM data."^^ . "MS"^^ . "MS:1002170"^^ . "TOPP FeatureFinderMRM"^^ . _:genid3742 . _:genid3742 . _:genid3742 . _:genid3742 "Quantifies features LC-MS/MS MRM data."^^ . _:genid3742 "PSI:PI"^^ . . . "Computes protein abundances from annotated feature/consensus maps."^^ . "MS"^^ . "MS:1002171"^^ . "TOPP ProteinQuantifier"^^ . _:genid3743 . _:genid3743 . _:genid3743 . _:genid3743 "Computes protein abundances from annotated feature/consensus maps."^^ . _:genid3743 "PSI:PI"^^ . . . "Normalizes maps of one consensus XML file (after linking)."^^ . "MS"^^ . "MS:1002172"^^ . "TOPP ConsensusMapNormalizer"^^ . _:genid3744 . _:genid3744 . _:genid3744 . _:genid3744 "Normalizes maps of one consensus XML file (after linking)."^^ . _:genid3744 "PSI:PI"^^ . . . "Applies retention time transformations to maps."^^ . "MS"^^ . "MS:1002173"^^ . "TOPP MapRTTransformer"^^ . _:genid3745 . _:genid3745 . _:genid3745 . _:genid3745 "Applies retention time transformations to maps."^^ . _:genid3745 "PSI:PI"^^ . . . "Feature linker component of the TOPP software."^^ . "MS"^^ . "MS:1002174"^^ . "TOPP feature linker"^^ . _:genid3746 . _:genid3746 . _:genid3746 . _:genid3746 "Feature linker component of the TOPP software."^^ . _:genid3746 "PSI:PI"^^ . . . "Groups corresponding isotope-labeled features in a feature map."^^ . "MS"^^ . "MS:1002175"^^ . "TOPP FeatureLinkerLabeled"^^ . _:genid3747 . _:genid3747 . _:genid3747 . _:genid3747 "Groups corresponding isotope-labeled features in a feature map."^^ . _:genid3747 "PSI:PI"^^ . . . "Groups corresponding features from multiple maps."^^ . "MS"^^ . "MS:1002176"^^ . "TOPP FeatureLinkerUnlabeled"^^ . _:genid3748 . _:genid3748 . _:genid3748 . _:genid3748 "Groups corresponding features from multiple maps."^^ . _:genid3748 "PSI:PI"^^ . . . "Groups corresponding features from multiple maps using a quality threshold clustering approach."^^ . "MS"^^ . "MS:1002177"^^ . "TOPP FeatureLinkerUnlabeledQT"^^ . _:genid3749 . _:genid3749 . _:genid3749 . _:genid3749 "Groups corresponding features from multiple maps using a quality threshold clustering approach."^^ . _:genid3749 "PSI:PI"^^ . . . "Performs a peptide/protein identification with the CompNovo engine."^^ . "MS"^^ . "MS:1002178"^^ . "TOPP CompNovo"^^ . _:genid3750 . _:genid3750 . _:genid3750 . _:genid3750 "Performs a peptide/protein identification with the CompNovo engine."^^ . _:genid3750 "PSI:PI"^^ . . . "Performs a peptide/protein identification with the CompNovo engine in collision-induced dissociation (CID) mode."^^ . "MS"^^ . "MS:1002179"^^ . "TOPP CompNovoCID"^^ . _:genid3751 . _:genid3751 . _:genid3751 . _:genid3751 "Performs a peptide/protein identification with the CompNovo engine in collision-induced dissociation (CID) mode."^^ . _:genid3751 "PSI:PI"^^ . . . "Software adaptor to an external program in the TOPP software."^^ . "MS"^^ . "MS:1002180"^^ . "TOPP software adaptor"^^ . _:genid3752 . _:genid3752 . _:genid3752 . _:genid3752 "Software adaptor to an external program in the TOPP software."^^ . _:genid3752 "PSI:PI"^^ . . . "Identifies MS2 spectra using the external program Inspect."^^ . "MS"^^ . "MS:1002181"^^ . "TOPP InspectAdapter"^^ . _:genid3753 . _:genid3753 . _:genid3753 . _:genid3753 "Identifies MS2 spectra using the external program Inspect."^^ . _:genid3753 "PSI:PI"^^ . . . "Identifies MS2 spectra using the external program Mascot."^^ . "MS"^^ . "MS:1002182"^^ . "TOPP MascotAdapter"^^ . _:genid3754 . _:genid3754 . _:genid3754 . _:genid3754 "Identifies MS2 spectra using the external program Mascot."^^ . _:genid3754 "PSI:PI"^^ . . . "Identifies MS2 spectra using the online version of the external program Mascot."^^ . "MS"^^ . "MS:1002183"^^ . "TOPP MascotAdapterOnline"^^ . _:genid3755 . _:genid3755 . _:genid3755 . _:genid3755 "Identifies MS2 spectra using the online version of the external program Mascot."^^ . _:genid3755 "PSI:PI"^^ . . . "Identifies MS2 spectra using the external program OMSSA."^^ . "MS"^^ . "MS:1002184"^^ . "TOPP OMSSAAdapter"^^ . _:genid3756 . _:genid3756 . _:genid3756 . _:genid3756 "Identifies MS2 spectra using the external program OMSSA."^^ . _:genid3756 "PSI:PI"^^ . . . "Identifies MS2 spectra using the external program PepNovo."^^ . "MS"^^ . "MS:1002185"^^ . "TOPP PepNovoAdapter"^^ . _:genid3757 . _:genid3757 . _:genid3757 . _:genid3757 "Identifies MS2 spectra using the external program PepNovo."^^ . _:genid3757 "PSI:PI"^^ . . . "Identifies MS2 spectra using the external program XTandem."^^ . "MS"^^ . "MS:1002186"^^ . "TOPP XTandemAdapter"^^ . _:genid3758 . _:genid3758 . _:genid3758 . _:genid3758 "Identifies MS2 spectra using the external program XTandem."^^ . _:genid3758 "PSI:PI"^^ . . . "Identifies peptide MS2 spectra by spectral matching with a searchable spectral library."^^ . "MS"^^ . "MS:1002187"^^ . "TOPP SpecLibSearcher"^^ . _:genid3759 . _:genid3759 . _:genid3759 . _:genid3759 "Identifies peptide MS2 spectra by spectral matching with a searchable spectral library."^^ . _:genid3759 "PSI:PI"^^ . . . "Computes a consensus identification from peptide identifications of several identification engines."^^ . "MS"^^ . "MS:1002188"^^ . "TOPP ConsensusID"^^ . _:genid3760 . _:genid3760 . _:genid3760 . _:genid3760 "Computes a consensus identification from peptide identifications of several identification engines."^^ . _:genid3760 "PSI:PI"^^ . . . "Resolves ambiguous annotations of features with peptide identifications."^^ . "MS"^^ . "MS:1002189"^^ . "TOPP IDConflictResolver"^^ . _:genid3761 . _:genid3761 . _:genid3761 . _:genid3761 "Resolves ambiguous annotations of features with peptide identifications."^^ . _:genid3761 "PSI:PI"^^ . . . "Filters results from protein or peptide identification engines based on different criteria."^^ . "MS"^^ . "MS:1002190"^^ . "TOPP IDFilter"^^ . _:genid3762 . _:genid3762 . _:genid3762 . _:genid3762 "Filters results from protein or peptide identification engines based on different criteria."^^ . _:genid3762 "PSI:PI"^^ . . . "Assigns protein/peptide identifications to feature or consensus features."^^ . "MS"^^ . "MS:1002191"^^ . "TOPP IDMapper"^^ . _:genid3763 . _:genid3763 . _:genid3763 . _:genid3763 "Assigns protein/peptide identifications to feature or consensus features."^^ . _:genid3763 "PSI:PI"^^ . . . "Estimates posterior error probabilities using a mixture model."^^ . "MS"^^ . "MS:1002192"^^ . "TOPP IDPosteriorErrorProbability"^^ . _:genid3764 . _:genid3764 . _:genid3764 . _:genid3764 "Estimates posterior error probabilities using a mixture model."^^ . _:genid3764 "PSI:PI"^^ . . . "Calibrate Retention times of peptide hits to standards."^^ . "MS"^^ . "MS:1002193"^^ . "TOPP IDRTCalibration"^^ . _:genid3765 . _:genid3765 . _:genid3765 . _:genid3765 "Calibrate Retention times of peptide hits to standards."^^ . _:genid3765 "PSI:PI"^^ . . . "Refreshes the protein references for all peptide hits."^^ . "MS"^^ . "MS:1002194"^^ . "TOPP PeptideIndexer"^^ . _:genid3766 . _:genid3766 . _:genid3766 . _:genid3766 "Refreshes the protein references for all peptide hits."^^ . _:genid3766 "PSI:PI"^^ . . . "A tool for precursor ion selection based on identification results."^^ . "MS"^^ . "MS:1002195"^^ . "TOPP PrecursorIonSelector"^^ . _:genid3767 . _:genid3767 . _:genid3767 . _:genid3767 "A tool for precursor ion selection based on identification results."^^ . _:genid3767 "PSI:PI"^^ . . . "MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML)."^^ . "MS"^^ . "MS:1002196"^^ . "TOPP MRMMapper"^^ . _:genid3768 . _:genid3768 . _:genid3768 . _:genid3768 "MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML)."^^ . _:genid3768 "PSI:PI"^^ . . . "OpenSwath component of the TOPP software."^^ . "MS"^^ . "MS:1002197"^^ . "TOPP OpenSwath component"^^ . _:genid3769 . _:genid3769 . _:genid3769 . _:genid3769 "OpenSwath component of the TOPP software."^^ . _:genid3769 "PSI:PI"^^ . . . "Picks peaks and finds features in an SRM experiment."^^ . "MS"^^ . "MS:1002198"^^ . "TOPP OpenSwathAnalyzer"^^ . _:genid3770 . _:genid3770 . _:genid3770 . _:genid3770 "Picks peaks and finds features in an SRM experiment."^^ . _:genid3770 "PSI:PI"^^ . . . "Extract chromatograms (XIC) from a MS2 map file."^^ . "MS"^^ . "MS:1002199"^^ . "TOPP OpenSwathChromatogramExtractor"^^ . _:genid3771 . _:genid3771 . _:genid3771 . _:genid3771 "Extract chromatograms (XIC) from a MS2 map file."^^ . _:genid3771 "PSI:PI"^^ . . . "Generates decoys according to different models for a specific TraML."^^ . "MS"^^ . "MS:1002200"^^ . "TOPP OpenSwathDecoyGenerator"^^ . _:genid3772 . _:genid3772 . _:genid3772 . _:genid3772 "Generates decoys according to different models for a specific TraML."^^ . _:genid3772 "PSI:PI"^^ . . . "Converts a featureXML to a mProphet tsv (tab separated values)."^^ . "MS"^^ . "MS:1002201"^^ . "TOPP OpenSwathFeatureXMLToTSV"^^ . _:genid3773 . _:genid3773 . _:genid3773 . _:genid3773 "Converts a featureXML to a mProphet tsv (tab separated values)."^^ . _:genid3773 "PSI:PI"^^ . . . "Generates a transformation file for retention time space into normalized space."^^ . "MS"^^ . "MS:1002202"^^ . "TOPP OpenSwathRTNormalizer"^^ . _:genid3774 . _:genid3774 . _:genid3774 . _:genid3774 "Generates a transformation file for retention time space into normalized space."^^ . _:genid3774 "PSI:PI"^^ . . . "Infer proteins from a list of (high-confidence) peptides."^^ . "MS"^^ . "MS:1002203"^^ . "TOPP ProteinInference"^^ . _:genid3775 . _:genid3775 . _:genid3775 . _:genid3775 "Infer proteins from a list of (high-confidence) peptides."^^ . _:genid3775 "PSI:PI"^^ . . . "Estimates the false discovery rate on peptide and protein level using decoy searches."^^ . "MS"^^ . "MS:1002204"^^ . "TOPP FalseDiscoveryRate"^^ . _:genid3776 . _:genid3776 . _:genid3776 . _:genid3776 "Estimates the false discovery rate on peptide and protein level using decoy searches."^^ . _:genid3776 "PSI:PI"^^ . . . "Converts, filters, and processes mass spectrometry data in variety of formats."^^ . "MS"^^ . "MS:1002205"^^ . "ProteoWizard msconvert"^^ . _:genid3777 . _:genid3777 . _:genid3777 . _:genid3777 "Converts, filters, and processes mass spectrometry data in variety of formats."^^ . _:genid3777 "PSI:MS"^^ . . . "Converts, filters, and processes identifications from shotgun proteomics experiments."^^ . "MS"^^ . "MS:1002206"^^ . "ProteoWizard idconvert"^^ . _:genid3778 . _:genid3778 . _:genid3778 . _:genid3778 "Converts, filters, and processes identifications from shotgun proteomics experiments."^^ . _:genid3778 "PSI:MS"^^ . . . "Filters and processes protein sequence databases."^^ . "MS"^^ . "MS:1002207"^^ . "ProteoWizard chainsaw"^^ . _:genid3779 . _:genid3779 . _:genid3779 . _:genid3779 "Filters and processes protein sequence databases."^^ . _:genid3779 "PSI:MS"^^ . . . "Filters, processes, and displays mass spectrometry data in a variety of ways."^^ . "MS"^^ . "MS:1002208"^^ . "ProteoWizard msaccess"^^ . _:genid3780 . _:genid3780 . _:genid3780 . _:genid3780 "Filters, processes, and displays mass spectrometry data in a variety of ways."^^ . _:genid3780 "PSI:MS"^^ . . . "An interactive GUI application to view and filter mass spectrometry data in a variety of formats."^^ . "MS"^^ . "MS:1002209"^^ . "ProteoWizard SeeMS"^^ . _:genid3781 . _:genid3781 . _:genid3781 . _:genid3781 "An interactive GUI application to view and filter mass spectrometry data in a variety of formats."^^ . _:genid3781 "PSI:MS"^^ . . . . "A quantitative software package designed for analysis of IPTL, TMT and iTRAQ data."^^ . "MS"^^ . "MS:1002210"^^ . "IsobariQ"^^ . _:genid3782 . _:genid3782 . _:genid3782 . _:genid3782 "A quantitative software package designed for analysis of IPTL, TMT and iTRAQ data."^^ . _:genid3782 "DOI:10.1021/pr1009977"^^ . _:genid3782 "PMID:21067241"^^ . _:genid3782 "http://folk.uio.no/magnusar/isobariq"^^ . . . "The model incorporates data calibration (normalization), a model for the dependence of the variance on the mean intensity, and a variance stabilizing data transformation."^^ . "MS"^^ . "MS:1002211"^^ . "Variance stabilizing normalization"^^ . _:genid3783 . _:genid3783 . _:genid3783 . _:genid3783 "The model incorporates data calibration (normalization), a model for the dependence of the variance on the mean intensity, and a variance stabilizing data transformation."^^ . _:genid3783 "PMID:16646781"^^ . . . "Quantification analysis using a labelling strategy where both peptide termini are labelled so that the peptides from different labelling schema are isobaric."^^ . "MS"^^ . "MS:1002212"^^ . "IPTL quantitation analysis"^^ . _:genid3784 . _:genid3784 . _:genid3784 . _:genid3784 "Quantification analysis using a labelling strategy where both peptide termini are labelled so that the peptides from different labelling schema are isobaric."^^ . _:genid3784 "PMID:19655813"^^ . _:genid3784 "PSI:PI"^^ . . . _:genid3785 . _:genid3785 . _:genid3785 . _:genid3785 . "A protein identified by at least one unique (distinct, discrete) peptide (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002213"^^ . "PAnalyzer:conclusive protein"^^ . _:genid3786 . _:genid3786 . _:genid3786 . _:genid3786 "A protein identified by at least one unique (distinct, discrete) peptide (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^ . _:genid3786 "PSI:PI"^^ . _:genid3787 . _:genid3787 . _:genid3787 . _:genid3787 "value-type:xsd:string"^^ . _:genid3787 "The allowed value-type for this CV term."^^ . . . _:genid3788 . _:genid3788 . _:genid3788 . _:genid3788 . "A member of a group of proteins sharing all peptides that are exclusive to the group (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002214"^^ . "PAnalyzer:indistinguishable protein"^^ . _:genid3789 . _:genid3789 . _:genid3789 . _:genid3789 "A member of a group of proteins sharing all peptides that are exclusive to the group (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^ . _:genid3789 "PSI:PI"^^ . _:genid3790 . _:genid3790 . _:genid3790 . _:genid3790 "value-type:xsd:string"^^ . _:genid3790 "The allowed value-type for this CV term."^^ . . . _:genid3791 . _:genid3791 . _:genid3791 . _:genid3791 . "A protein sharing all its matched peptides with either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002215"^^ . "PAnalyzer:non-conclusive protein"^^ . _:genid3792 . _:genid3792 . _:genid3792 . _:genid3792 "A protein sharing all its matched peptides with either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^ . _:genid3792 "PSI:PI"^^ . _:genid3793 . _:genid3793 . _:genid3793 . _:genid3793 "value-type:xsd:string"^^ . _:genid3793 "The allowed value-type for this CV term."^^ . . . _:genid3794 . _:genid3794 . _:genid3794 . _:genid3794 . "A protein sharing at least one peptide not matched to either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002216"^^ . "PAnalyzer:ambiguous group member"^^ . _:genid3795 . _:genid3795 . _:genid3795 . _:genid3795 "A protein sharing at least one peptide not matched to either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum)."^^ . _:genid3795 "PSI:PI"^^ . _:genid3796 . _:genid3796 . _:genid3796 . _:genid3796 "value-type:xsd:string"^^ . _:genid3796 "The allowed value-type for this CV term."^^ . . . _:genid3797 . _:genid3797 . _:genid3797 . _:genid3797 . "A putative identified peptide issued from a decoy sequence database."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002217"^^ . "decoy peptide"^^ . _:genid3798 . _:genid3798 . _:genid3798 . _:genid3798 "A putative identified peptide issued from a decoy sequence database."^^ . _:genid3798 "PSI:PI"^^ . _:genid3799 . _:genid3799 . _:genid3799 . _:genid3799 "value-type:xsd:boolean"^^ . _:genid3799 "The allowed value-type for this CV term."^^ . . . _:genid3800 . _:genid3800 . _:genid3800 . _:genid3800 . _:genid3801 . _:genid3801 . _:genid3801 . _:genid3801 . "Collision energy at the start of the collision energy ramp in percent, normalized to the mass of the ion."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002218"^^ . "percent collision energy ramp start"^^ . _:genid3802 . _:genid3802 . _:genid3802 . _:genid3802 "Collision energy at the start of the collision energy ramp in percent, normalized to the mass of the ion."^^ . _:genid3802 "PSI:PI"^^ . _:genid3803 . _:genid3803 . _:genid3803 . _:genid3803 "value-type:xsd:float"^^ . _:genid3803 "The allowed value-type for this CV term."^^ . . . _:genid3804 . _:genid3804 . _:genid3804 . _:genid3804 . _:genid3805 . _:genid3805 . _:genid3805 . _:genid3805 . "Collision energy at the end of the collision energy ramp in percent, normalized to the mass of the ion."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002219"^^ . "percent collision energy ramp end"^^ . _:genid3806 . _:genid3806 . _:genid3806 . _:genid3806 "Collision energy at the end of the collision energy ramp in percent, normalized to the mass of the ion."^^ . _:genid3806 "PSI:PI"^^ . _:genid3807 . _:genid3807 . _:genid3807 . _:genid3807 "value-type:xsd:float"^^ . _:genid3807 "The allowed value-type for this CV term."^^ . . . "A web-based SRM assay design tool whose transitions are generated by mining the millions of identified peptide spectra held in the EBI's PRIDE database."^^ . "MS"^^ . "MS:1002220"^^ . "MRMaid"^^ . _:genid3808 . _:genid3808 . _:genid3808 . _:genid3808 "A web-based SRM assay design tool whose transitions are generated by mining the millions of identified peptide spectra held in the EBI's PRIDE database."^^ . _:genid3808 "PSI:PI"^^ . . . . "Score in MRMaid to indicate the expected performance of the peptide in SRM."^^ . "MS"^^ . "MS:1002221"^^ . "MRMaid:peptide score"^^ . _:genid3809 . _:genid3809 . _:genid3809 . _:genid3809 "Score in MRMaid to indicate the expected performance of the peptide in SRM."^^ . _:genid3809 "PSI:PI"^^ . . . _:genid3810 . _:genid3810 . _:genid3810 . _:genid3810 . "Attribute associated with a SRM transition."^^ . "MS"^^ . "MS:1002222"^^ . "SRM transition attribute"^^ . _:genid3811 . _:genid3811 . _:genid3811 . _:genid3811 "Attribute associated with a SRM transition."^^ . _:genid3811 "PSI:MS"^^ . . . _:genid3812 . _:genid3812 . _:genid3812 . _:genid3812 . "Probability of detecting precursor when parent protein is present."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002223"^^ . "precursor ion detection probability"^^ . _:genid3813 . _:genid3813 . _:genid3813 . _:genid3813 "Probability of detecting precursor when parent protein is present."^^ . _:genid3813 "PSI:PI"^^ . _:genid3814 . _:genid3814 . _:genid3814 . _:genid3814 "value-type:xsd:float"^^ . _:genid3814 "The allowed value-type for this CV term."^^ . . . _:genid3815 . _:genid3815 . _:genid3815 . _:genid3815 . "Probability of detecting product ion when precursor ion is present."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002224"^^ . "product ion detection probability"^^ . _:genid3816 . _:genid3816 . _:genid3816 . _:genid3816 "Probability of detecting product ion when precursor ion is present."^^ . _:genid3816 "PSI:PI"^^ . _:genid3817 . _:genid3817 . _:genid3817 . _:genid3817 "value-type:xsd:float"^^ . _:genid3817 "The allowed value-type for this CV term."^^ . . . _:genid3818 . _:genid3818 . _:genid3818 . _:genid3818 . _:genid3819 . _:genid3819 . _:genid3819 . _:genid3819 . _:genid3820 . _:genid3820 . _:genid3820 . _:genid3820 . _:genid3821 . _:genid3821 . _:genid3821 . _:genid3821 . "Average value of product ion intensity in a collection of identified spectra."^^ . "MS"^^ . "MS:1002225"^^ . "average product ion intensity"^^ . _:genid3822 . _:genid3822 . _:genid3822 . _:genid3822 "Average value of product ion intensity in a collection of identified spectra."^^ . _:genid3822 "PSI:PI"^^ . . . _:genid3823 . _:genid3823 . _:genid3823 . _:genid3823 . _:genid3824 . _:genid3824 . _:genid3824 . _:genid3824 . _:genid3825 . _:genid3825 . _:genid3825 . _:genid3825 . _:genid3826 . _:genid3826 . _:genid3826 . _:genid3826 . "Standard deviation of product ion intensity in a collection of identified spectra."^^ . "MS"^^ . "MS:1002226"^^ . "product ion intensity standard deviation"^^ . _:genid3827 . _:genid3827 . _:genid3827 . _:genid3827 "Standard deviation of product ion intensity in a collection of identified spectra."^^ . _:genid3827 "PSI:PI"^^ . . . _:genid3828 . _:genid3828 . _:genid3828 . _:genid3828 . "The number of times the specific product ion has been observed in a series of SRM experiments."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002227"^^ . "number of product ion observations"^^ . _:genid3829 . _:genid3829 . _:genid3829 . _:genid3829 "The number of times the specific product ion has been observed in a series of SRM experiments."^^ . _:genid3829 "PSI:PI"^^ . _:genid3830 . _:genid3830 . _:genid3830 . _:genid3830 "value-type:xsd:int"^^ . _:genid3830 "The allowed value-type for this CV term."^^ . . . _:genid3831 . _:genid3831 . _:genid3831 . _:genid3831 . "The number of times the specific precursor ion has been observed in a series of SRM experiments."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002228"^^ . "number of precursor ion observations"^^ . _:genid3832 . _:genid3832 . _:genid3832 . _:genid3832 "The number of times the specific precursor ion has been observed in a series of SRM experiments."^^ . _:genid3832 "PSI:PI"^^ . _:genid3833 . _:genid3833 . _:genid3833 . _:genid3833 "value-type:xsd:int"^^ . _:genid3833 "The allowed value-type for this CV term."^^ . . . _:genid3834 . _:genid3834 . _:genid3834 . _:genid3834 . "Calculated relaxed significance when performing a decoy search for high-confidence peptides."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002229"^^ . "ProteomeDiscoverer:Mascot:Significance Middle"^^ . _:genid3835 . _:genid3835 . _:genid3835 . _:genid3835 "Calculated relaxed significance when performing a decoy search for high-confidence peptides."^^ . _:genid3835 "PSI:PI"^^ . _:genid3836 . _:genid3836 . _:genid3836 . _:genid3836 "value-type:xsd:float"^^ . _:genid3836 "The allowed value-type for this CV term."^^ . . . _:genid3837 . _:genid3837 . _:genid3837 . _:genid3837 . "Calculated relaxed significance when performing a decoy search for medium-confidence peptides."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002230"^^ . "ProteomeDiscoverer:Mascot:Significance High"^^ . _:genid3838 . _:genid3838 . _:genid3838 . _:genid3838 "Calculated relaxed significance when performing a decoy search for medium-confidence peptides."^^ . _:genid3838 "PSI:PI"^^ . _:genid3839 . _:genid3839 . _:genid3839 . _:genid3839 "value-type:xsd:float"^^ . _:genid3839 "The allowed value-type for this CV term."^^ . . . "([A-Fa-f0-9]{8}-([A-Fa-f0-9]{4}-){3}[A-Fa-f0-9]{12})."^^ . "MS"^^ . "MS:1002231"^^ . "regular expressions for a GUID"^^ . _:genid3840 . _:genid3840 . _:genid3840 . _:genid3840 "([A-Fa-f0-9]{8}-([A-Fa-f0-9]{4}-){3}[A-Fa-f0-9]{12})."^^ . _:genid3840 "PSI:PI"^^ . . . _:genid3841 . _:genid3841 . _:genid3841 . _:genid3841 . "The default FDR calculator as globally unique identifier (GUID)."^^ . "MS"^^ . "MS:1002232"^^ . "ProteomeDiscoverer:Default FDR calculator"^^ . _:genid3842 . _:genid3842 . _:genid3842 . _:genid3842 "The default FDR calculator as globally unique identifier (GUID)."^^ . _:genid3842 "PSI:PI"^^ . . . _:genid3843 . _:genid3843 . _:genid3843 . _:genid3843 . "Flag indicating if low-resolution spectra are taken into consideration."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002233"^^ . "ProteomeDiscoverer:SEQUEST:Low resolution spectra contained"^^ . _:genid3844 . _:genid3844 . _:genid3844 . _:genid3844 "Flag indicating if low-resolution spectra are taken into consideration."^^ . _:genid3844 "PSI:PI"^^ . _:genid3845 . _:genid3845 . _:genid3845 . _:genid3845 "value-type:xsd:boolean"^^ . _:genid3845 "The allowed value-type for this CV term."^^ . . . _:genid3846 . _:genid3846 . _:genid3846 . _:genid3846 . _:genid3847 . _:genid3847 . _:genid3847 . _:genid3847 . "Mass-to-charge ratio of a precursor ion selected for fragmentation."^^ . "value-type:xsd:float"^^ . "MS"^^ . "selected ion m/z"^^ . "MS:1002234"^^ . "selected precursor m/z"^^ . _:genid3848 . _:genid3848 . _:genid3848 . _:genid3848 "Mass-to-charge ratio of a precursor ion selected for fragmentation."^^ . _:genid3848 "PSI:PI"^^ . _:genid3849 . _:genid3849 . _:genid3849 . _:genid3849 "value-type:xsd:float"^^ . _:genid3849 "The allowed value-type for this CV term."^^ . . . _:genid3850 . _:genid3850 . _:genid3850 . _:genid3850 . "A score assigned to a single protein accession (modelled as ProteinDetectionHypothesis in mzIdentML), based on summed peptide level scores."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002235"^^ . "ProteoGrouper:PDH score"^^ . _:genid3851 . _:genid3851 . _:genid3851 . _:genid3851 "A score assigned to a single protein accession (modelled as ProteinDetectionHypothesis in mzIdentML), based on summed peptide level scores."^^ . _:genid3851 "PSI:PI"^^ . _:genid3852 . _:genid3852 . _:genid3852 . _:genid3852 "value-type:xsd:double"^^ . _:genid3852 "The allowed value-type for this CV term."^^ . . . _:genid3853 . _:genid3853 . _:genid3853 . _:genid3853 . "A score assigned to a protein group (modelled as ProteinAmbiguityGroup in mzIdentML), based on all summed peptide level scores that have been assigned to the group as unique or razor peptides."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002236"^^ . "ProteoGrouper:PAG score"^^ . _:genid3854 . _:genid3854 . _:genid3854 . _:genid3854 "A score assigned to a protein group (modelled as ProteinAmbiguityGroup in mzIdentML), based on all summed peptide level scores that have been assigned to the group as unique or razor peptides."^^ . _:genid3854 "PSI:PI"^^ . _:genid3855 . _:genid3855 . _:genid3855 . _:genid3855 "value-type:xsd:double"^^ . _:genid3855 "The allowed value-type for this CV term."^^ . . . "A library of Java routines for manipulating mzIdentML files."^^ . "MS"^^ . "MS:1002237"^^ . "mzidLib"^^ . _:genid3856 . _:genid3856 . _:genid3856 . _:genid3856 "A library of Java routines for manipulating mzIdentML files."^^ . _:genid3856 "PSI:PI"^^ . . . "A converter for OMSSA OMX to mzIdentML."^^ . "MS"^^ . "MS:1002238"^^ . "mzidLib:Omssa2Mzid"^^ . _:genid3857 . _:genid3857 . _:genid3857 . _:genid3857 "A converter for OMSSA OMX to mzIdentML."^^ . _:genid3857 "PSI:PI"^^ . . . "A converter for Tandem XML to mzIdentML."^^ . "MS"^^ . "MS:1002239"^^ . "mzidLib:Tandem2Mzid"^^ . _:genid3858 . _:genid3858 . _:genid3858 . _:genid3858 "A converter for Tandem XML to mzIdentML."^^ . _:genid3858 "PSI:PI"^^ . . . "A converter for CSV files (following OMSSA CSV style) to mzIdentML."^^ . "MS"^^ . "MS:1002240"^^ . "mzidLib:Csv2Mzid"^^ . _:genid3859 . _:genid3859 . _:genid3859 . _:genid3859 "A converter for CSV files (following OMSSA CSV style) to mzIdentML."^^ . _:genid3859 "PSI:PI"^^ . . . "A generic and parameterizable protein inference algorithm for mzIdentML files."^^ . "MS"^^ . "MS:1002241"^^ . "mzidLib:ProteoGrouper"^^ . _:genid3860 . _:genid3860 . _:genid3860 . _:genid3860 "A generic and parameterizable protein inference algorithm for mzIdentML files."^^ . _:genid3860 "PSI:PI"^^ . . . "A routine for keeping only identifications passing a given threshold or setting passThreshold to true or false for SpectrumIdentificationItem or ProteinDetectionHypothesis in mzIdentML files."^^ . "MS"^^ . "MS:1002242"^^ . "mzidLib:Thresholder"^^ . _:genid3861 . _:genid3861 . _:genid3861 . _:genid3861 "A routine for keeping only identifications passing a given threshold or setting passThreshold to true or false for SpectrumIdentificationItem or ProteinDetectionHypothesis in mzIdentML files."^^ . _:genid3861 "PSI:PI"^^ . . . "A routine for adding emPAI quantitative values to an mzIdentML file."^^ . "MS"^^ . "MS:1002243"^^ . "mzidLib:Perform emPAI on mzid"^^ . _:genid3862 . _:genid3862 . _:genid3862 . _:genid3862 "A routine for adding emPAI quantitative values to an mzIdentML file."^^ . _:genid3862 "PSI:PI"^^ . . . "A routine for calculating local FDR, q-value and FDRScore for mzIdentML files, based on a decoy search."^^ . "MS"^^ . "MS:1002244"^^ . "mzidLib:FalseDiscoveryRate"^^ . _:genid3863 . _:genid3863 . _:genid3863 . _:genid3863 "A routine for calculating local FDR, q-value and FDRScore for mzIdentML files, based on a decoy search."^^ . _:genid3863 "PSI:PI"^^ . . . "A tool for converting mzIdentML files to CSV format."^^ . "MS"^^ . "MS:1002245"^^ . "mzidLib:Mzidentml2Csv"^^ . _:genid3864 . _:genid3864 . _:genid3864 . _:genid3864 "A tool for converting mzIdentML files to CSV format."^^ . _:genid3864 "PSI:PI"^^ . . . "A tool for combining results analysed in parallel in two or three search engines into a single mzIdentML file."^^ . "MS"^^ . "MS:1002246"^^ . "mzidLib:CombineSearchEngines"^^ . _:genid3865 . _:genid3865 . _:genid3865 . _:genid3865 "A tool for combining results analysed in parallel in two or three search engines into a single mzIdentML file."^^ . _:genid3865 "PMID:19253293"^^ . . . "A tool for adding additional meta data from a FASTA file to DBSequence entries (sequence and description) in mzIdentML files."^^ . "MS"^^ . "MS:1002247"^^ . "mzidLib:InsertMetaDataFromFasta"^^ . _:genid3866 . _:genid3866 . _:genid3866 . _:genid3866 "A tool for adding additional meta data from a FASTA file to DBSequence entries (sequence and description) in mzIdentML files."^^ . _:genid3866 "PSI:PI"^^ . . . _:genid3867 . _:genid3867 . _:genid3867 . _:genid3867 . "The SEQUEST result 'SpScore'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002248"^^ . "SEQUEST:spscore"^^ . _:genid3868 . _:genid3868 . _:genid3868 . _:genid3868 "The SEQUEST result 'SpScore'."^^ . _:genid3868 "PSI:PI"^^ . _:genid3869 . _:genid3869 . _:genid3869 . _:genid3869 "value-type:xsd:double"^^ . _:genid3869 "The allowed value-type for this CV term."^^ . . . _:genid3870 . _:genid3870 . _:genid3870 . _:genid3870 . "The SEQUEST result 'SpRank'."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002249"^^ . "SEQUEST:sprank"^^ . _:genid3871 . _:genid3871 . _:genid3871 . _:genid3871 "The SEQUEST result 'SpRank'."^^ . _:genid3871 "PSI:PI"^^ . _:genid3872 . _:genid3872 . _:genid3872 . _:genid3872 "value-type:xsd:int"^^ . _:genid3872 "The allowed value-type for this CV term."^^ . . . _:genid3873 . _:genid3873 . _:genid3873 . _:genid3873 . "The SEQUEST result 'DeltaCnStar'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002250"^^ . "SEQUEST:deltacnstar"^^ . _:genid3874 . _:genid3874 . _:genid3874 . _:genid3874 "The SEQUEST result 'DeltaCnStar'."^^ . _:genid3874 "PSI:PI"^^ . _:genid3875 . _:genid3875 . _:genid3875 . _:genid3875 "value-type:xsd:double"^^ . _:genid3875 "The allowed value-type for this CV term."^^ . . . "Comet open-source sequence search engine developed at the University of Washington."^^ . "MS"^^ . "MS:1002251"^^ . "Comet"^^ . _:genid3876 . _:genid3876 . _:genid3876 . _:genid3876 "Comet open-source sequence search engine developed at the University of Washington."^^ . _:genid3876 "PMID:23148064"^^ . . . _:genid3877 . _:genid3877 . _:genid3877 . _:genid3877 . _:genid3878 . _:genid3878 . _:genid3878 . _:genid3878 . "The Comet result 'XCorr'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002252"^^ . "Comet:xcorr"^^ . _:genid3879 . _:genid3879 . _:genid3879 . _:genid3879 "The Comet result 'XCorr'."^^ . _:genid3879 "PSI:PI"^^ . _:genid3880 . _:genid3880 . _:genid3880 . _:genid3880 "value-type:xsd:double"^^ . _:genid3880 "The allowed value-type for this CV term."^^ . . . _:genid3881 . _:genid3881 . _:genid3881 . _:genid3881 . "The Comet result 'DeltaCn'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002253"^^ . "Comet:deltacn"^^ . _:genid3882 . _:genid3882 . _:genid3882 . _:genid3882 "The Comet result 'DeltaCn'."^^ . _:genid3882 "PSI:PI"^^ . _:genid3883 . _:genid3883 . _:genid3883 . _:genid3883 "value-type:xsd:double"^^ . _:genid3883 "The allowed value-type for this CV term."^^ . . . _:genid3884 . _:genid3884 . _:genid3884 . _:genid3884 . "The Comet result 'DeltaCnStar'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002254"^^ . "Comet:deltacnstar"^^ . _:genid3885 . _:genid3885 . _:genid3885 . _:genid3885 "The Comet result 'DeltaCnStar'."^^ . _:genid3885 "PSI:PI"^^ . _:genid3886 . _:genid3886 . _:genid3886 . _:genid3886 "value-type:xsd:double"^^ . _:genid3886 "The allowed value-type for this CV term."^^ . . . _:genid3887 . _:genid3887 . _:genid3887 . _:genid3887 . "The Comet result 'SpScore'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002255"^^ . "Comet:spscore"^^ . _:genid3888 . _:genid3888 . _:genid3888 . _:genid3888 "The Comet result 'SpScore'."^^ . _:genid3888 "PSI:PI"^^ . _:genid3889 . _:genid3889 . _:genid3889 . _:genid3889 "value-type:xsd:double"^^ . _:genid3889 "The allowed value-type for this CV term."^^ . . . _:genid3890 . _:genid3890 . _:genid3890 . _:genid3890 . "The Comet result 'SpRank'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002256"^^ . "Comet:sprank"^^ . _:genid3891 . _:genid3891 . _:genid3891 . _:genid3891 "The Comet result 'SpRank'."^^ . _:genid3891 "PSI:PI"^^ . _:genid3892 . _:genid3892 . _:genid3892 . _:genid3892 "value-type:xsd:double"^^ . _:genid3892 "The allowed value-type for this CV term."^^ . . . _:genid3893 . _:genid3893 . _:genid3893 . _:genid3893 . "The Comet result 'Expectation value'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002257"^^ . "Comet:expectation value"^^ . _:genid3894 . _:genid3894 . _:genid3894 . _:genid3894 "The Comet result 'Expectation value'."^^ . _:genid3894 "PSI:PI"^^ . _:genid3895 . _:genid3895 . _:genid3895 . _:genid3895 "value-type:xsd:double"^^ . _:genid3895 "The allowed value-type for this CV term."^^ . . . _:genid3896 . _:genid3896 . _:genid3896 . _:genid3896 . "The Comet result 'Matched Ions'."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002258"^^ . "Comet:matched ions"^^ . _:genid3897 . _:genid3897 . _:genid3897 . _:genid3897 "The Comet result 'Matched Ions'."^^ . _:genid3897 "PSI:PI"^^ . _:genid3898 . _:genid3898 . _:genid3898 . _:genid3898 "value-type:xsd:int"^^ . _:genid3898 "The allowed value-type for this CV term."^^ . . . _:genid3899 . _:genid3899 . _:genid3899 . _:genid3899 . "The Comet result 'Total Ions'."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002259"^^ . "Comet:total ions"^^ . _:genid3900 . _:genid3900 . _:genid3900 . _:genid3900 "The Comet result 'Total Ions'."^^ . _:genid3900 "PSI:PI"^^ . _:genid3901 . _:genid3901 . _:genid3901 . _:genid3901 "value-type:xsd:int"^^ . _:genid3901 "The allowed value-type for this CV term."^^ . . . _:genid3902 . _:genid3902 . _:genid3902 . _:genid3902 . "False-discovery rate threshold for peptide-spectrum matches."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002260"^^ . "PSM:FDR threshold"^^ . _:genid3903 . _:genid3903 . _:genid3903 . _:genid3903 "False-discovery rate threshold for peptide-spectrum matches."^^ . _:genid3903 "PSI:PI"^^ . _:genid3904 . _:genid3904 . _:genid3904 . _:genid3904 "value-type:xsd:double"^^ . _:genid3904 "The allowed value-type for this CV term."^^ . . . "Byonic search engine from Protein Metrics."^^ . "MS"^^ . "MS:1002261"^^ . "Byonic"^^ . _:genid3905 . _:genid3905 . _:genid3905 . _:genid3905 "Byonic search engine from Protein Metrics."^^ . _:genid3905 "PMID:23255153"^^ . . . _:genid3906 . _:genid3906 . _:genid3906 . _:genid3906 . _:genid3907 . _:genid3907 . _:genid3907 . _:genid3907 . "The Byonic score is the primary indicator of PSM correctness. The Byonic score reflects the absolute quality of the peptide-spectrum match, not the relative quality compared to other candidate peptides. Byonic scores range from 0 to about 1000, with 300 a good score, 400 a very good score, and PSMs with scores over 500 almost sure to be correct."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002262"^^ . "Byonic:Score"^^ . _:genid3908 . _:genid3908 . _:genid3908 . _:genid3908 "The Byonic score is the primary indicator of PSM correctness. The Byonic score reflects the absolute quality of the peptide-spectrum match, not the relative quality compared to other candidate peptides. Byonic scores range from 0 to about 1000, with 300 a good score, 400 a very good score, and PSMs with scores over 500 almost sure to be correct."^^ . _:genid3908 "PSI:PI"^^ . _:genid3909 . _:genid3909 . _:genid3909 . _:genid3909 "value-type:xsd:double"^^ . _:genid3909 "The allowed value-type for this CV term."^^ . . . _:genid3910 . _:genid3910 . _:genid3910 . _:genid3910 . _:genid3911 . _:genid3911 . _:genid3911 . _:genid3911 . "The drop in Byonic score from the top-scoring peptide to the next peptide with distinct sequence. In this computation, the same peptide with different modifications is not considered distinct."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002263"^^ . "Byonic:Delta Score"^^ . _:genid3912 . _:genid3912 . _:genid3912 . _:genid3912 "The drop in Byonic score from the top-scoring peptide to the next peptide with distinct sequence. In this computation, the same peptide with different modifications is not considered distinct."^^ . _:genid3912 "PSI:PI"^^ . _:genid3913 . _:genid3913 . _:genid3913 . _:genid3913 "value-type:xsd:double"^^ . _:genid3913 "The allowed value-type for this CV term."^^ . . . _:genid3914 . _:genid3914 . _:genid3914 . _:genid3914 . _:genid3915 . _:genid3915 . _:genid3915 . _:genid3915 . "The drop in Byonic score from the top-scoring peptide to the next peptide different in any way, including placement of modifications. DeltaMod gives an indication of whether modifications are confidently localized; DeltaMod over 10.0 means that there is high likelihood that all modification placements are correct."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002264"^^ . "Byonic:DeltaMod Score"^^ . _:genid3916 . _:genid3916 . _:genid3916 . _:genid3916 "The drop in Byonic score from the top-scoring peptide to the next peptide different in any way, including placement of modifications. DeltaMod gives an indication of whether modifications are confidently localized; DeltaMod over 10.0 means that there is high likelihood that all modification placements are correct."^^ . _:genid3916 "PSI:PI"^^ . _:genid3917 . _:genid3917 . _:genid3917 . _:genid3917 "value-type:xsd:double"^^ . _:genid3917 "The allowed value-type for this CV term."^^ . . . _:genid3918 . _:genid3918 . _:genid3918 . _:genid3918 . _:genid3919 . _:genid3919 . _:genid3919 . _:genid3919 . "Byonic posterior error probability."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002265"^^ . "Byonic:PEP"^^ . _:genid3920 . _:genid3920 . _:genid3920 . _:genid3920 "Byonic posterior error probability."^^ . _:genid3920 "PSI:PI"^^ . _:genid3921 . _:genid3921 . _:genid3921 . _:genid3921 "value-type:xsd:double"^^ . _:genid3921 "The allowed value-type for this CV term."^^ . . . _:genid3922 . _:genid3922 . _:genid3922 . _:genid3922 . _:genid3923 . _:genid3923 . _:genid3923 . _:genid3923 . "The log p-value of the PSM. This is the log of the probability that the PSM with such a score and delta would arise by chance in a search of this size (the size of the protein database, as expanded by the modification rules). A log p-value of -3.0 should happen by chance on only one of a thousand spectra. Caveat: it is very hard to compute a p-value that works for all searches and all spectra, so read Byonic p-values with a certain amount of skepticism."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002266"^^ . "Byonic:Peptide LogProb"^^ . _:genid3924 . _:genid3924 . _:genid3924 . _:genid3924 "The log p-value of the PSM. This is the log of the probability that the PSM with such a score and delta would arise by chance in a search of this size (the size of the protein database, as expanded by the modification rules). A log p-value of -3.0 should happen by chance on only one of a thousand spectra. Caveat: it is very hard to compute a p-value that works for all searches and all spectra, so read Byonic p-values with a certain amount of skepticism."^^ . _:genid3924 "PSI:PI"^^ . _:genid3925 . _:genid3925 . _:genid3925 . _:genid3925 "value-type:xsd:double"^^ . _:genid3925 "The allowed value-type for this CV term."^^ . . . _:genid3926 . _:genid3926 . _:genid3926 . _:genid3926 . _:genid3927 . _:genid3927 . _:genid3927 . _:genid3927 . "The log p-value of the protein."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002267"^^ . "Byonic:Protein LogProb"^^ . _:genid3928 . _:genid3928 . _:genid3928 . _:genid3928 "The log p-value of the protein."^^ . _:genid3928 "PSI:PI"^^ . _:genid3929 . _:genid3929 . _:genid3929 . _:genid3929 "value-type:xsd:double"^^ . _:genid3929 "The allowed value-type for this CV term."^^ . . . . _:genid3930 . _:genid3930 . _:genid3930 . _:genid3930 . _:genid3931 . _:genid3931 . _:genid3931 . _:genid3931 . "Best (most negative) log p-value of an individual PSM."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002268"^^ . "Byonic:Best LogProb"^^ . _:genid3932 . _:genid3932 . _:genid3932 . _:genid3932 "Best (most negative) log p-value of an individual PSM."^^ . _:genid3932 "PSI:PI"^^ . _:genid3933 . _:genid3933 . _:genid3933 . _:genid3933 "value-type:xsd:double"^^ . _:genid3933 "The allowed value-type for this CV term."^^ . . . _:genid3934 . _:genid3934 . _:genid3934 . _:genid3934 . _:genid3935 . _:genid3935 . _:genid3935 . _:genid3935 . "Best (largest) Byonic score of a PSM."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002269"^^ . "Byonic:Best Score"^^ . _:genid3936 . _:genid3936 . _:genid3936 . _:genid3936 "Best (largest) Byonic score of a PSM."^^ . _:genid3936 "PSI:PI"^^ . _:genid3937 . _:genid3937 . _:genid3937 . _:genid3937 "value-type:xsd:double"^^ . _:genid3937 "The allowed value-type for this CV term."^^ . . . "A technique by which molecules are separated by chemical and physical properties such as hydrophobicity or vapour pressure."^^ . "MS"^^ . "MS:1002270"^^ . "chromatography separation"^^ . _:genid3938 . _:genid3938 . _:genid3938 . _:genid3938 "A technique by which molecules are separated by chemical and physical properties such as hydrophobicity or vapour pressure."^^ . _:genid3938 "PSI:MS"^^ . . . "Liquid chromatography (LC) is a separation technique in which the mobile phase is a liquid."^^ . "MS"^^ . "MS:1002271"^^ . "liquid chromatography separation"^^ . _:genid3939 . _:genid3939 . _:genid3939 . _:genid3939 "Liquid chromatography (LC) is a separation technique in which the mobile phase is a liquid."^^ . _:genid3939 "PSI:MS"^^ . . . "Gas chromatography (GC) is a separation technique in which the mobile phase is a gas."^^ . "MS"^^ . "MS:1002272"^^ . "gas chromatography separation"^^ . _:genid3940 . _:genid3940 . _:genid3940 . _:genid3940 "Gas chromatography (GC) is a separation technique in which the mobile phase is a gas."^^ . _:genid3940 "PSI:MS"^^ . . . _:genid3941 . _:genid3941 . _:genid3941 . _:genid3941 . _:genid3942 . _:genid3942 . _:genid3942 . _:genid3942 . "Detector potential difference in volts."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002273"^^ . "detector potential"^^ . _:genid3943 . _:genid3943 . _:genid3943 . _:genid3943 "Detector potential difference in volts."^^ . _:genid3943 "PSI:MS"^^ . _:genid3944 . _:genid3944 . _:genid3944 . _:genid3944 "value-type:xsd:float"^^ . _:genid3944 "The allowed value-type for this CV term."^^ . . . "Waters quadrupole based SQ Detector 2."^^ . "MS"^^ . "MS:1002274"^^ . "SQ Detector 2"^^ . _:genid3945 . _:genid3945 . _:genid3945 . _:genid3945 "Waters quadrupole based SQ Detector 2."^^ . _:genid3945 "PSI:MS"^^ . . . "Waters oa-ToF based Xevo G2-S Tof."^^ . "MS"^^ . "MS:1002275"^^ . "Xevo G2-S Tof"^^ . _:genid3946 . _:genid3946 . _:genid3946 . _:genid3946 "Waters oa-ToF based Xevo G2-S Tof."^^ . _:genid3946 "PSI:MS"^^ . . . "Waters oa-ToF based Xevo G2-S QTof."^^ . "MS"^^ . "MS:1002276"^^ . "Xevo G2-S QTof"^^ . _:genid3947 . _:genid3947 . _:genid3947 . _:genid3947 "Waters oa-ToF based Xevo G2-S QTof."^^ . _:genid3947 "PSI:MS"^^ . . . "Waters AutoSpec Premier magnetic sector instrument."^^ . "MS"^^ . "MS:1002277"^^ . "AutoSpec Premier"^^ . _:genid3948 . _:genid3948 . _:genid3948 . _:genid3948 "Waters AutoSpec Premier magnetic sector instrument."^^ . _:genid3948 "PSI:MS"^^ . . . "LECO nominal mass resolution time-of-flight GC mass spectrometer."^^ . "MS"^^ . "MS:1002278"^^ . "Pegasus III"^^ . _:genid3949 . _:genid3949 . _:genid3949 . _:genid3949 "LECO nominal mass resolution time-of-flight GC mass spectrometer."^^ . _:genid3949 "PSI:MS"^^ . . . "Bruker Daltonics' maXis 4G: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^ . "MS"^^ . "MS:1002279"^^ . "maXis 4G"^^ . _:genid3950 . _:genid3950 . _:genid3950 . _:genid3950 "Bruker Daltonics' maXis 4G: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^ . _:genid3950 "PSI:MS"^^ . . . "Bruker Daltonics' compact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^ . "MS"^^ . "MS:1002280"^^ . "compact"^^ . _:genid3951 . _:genid3951 . _:genid3951 . _:genid3951 "Bruker Daltonics' compact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^ . _:genid3951 "PSI:MS"^^ . . . "Selected Reaction Monitoring feature level quantitation."^^ . "MS"^^ . "MS:1002281"^^ . "SRM feature level quantitation"^^ . _:genid3952 . _:genid3952 . _:genid3952 . _:genid3952 "Selected Reaction Monitoring feature level quantitation."^^ . _:genid3952 "PSI:PI"^^ . . . "Selected Reaction Monitoring peptide level quantitation."^^ . "MS"^^ . "MS:1002282"^^ . "SRM peptide level quantitation"^^ . _:genid3953 . _:genid3953 . _:genid3953 . _:genid3953 "Selected Reaction Monitoring peptide level quantitation."^^ . _:genid3953 "PSI:PI"^^ . . . "Selected Reaction Monitoring protein level quantitation."^^ . "MS"^^ . "MS:1002283"^^ . "SRM protein level quantitation"^^ . _:genid3954 . _:genid3954 . _:genid3954 . _:genid3954 "Selected Reaction Monitoring protein level quantitation."^^ . _:genid3954 "PSI:PI"^^ . . . "Selected Reaction Monitoring proteingroup level quantitation."^^ . "MS"^^ . "MS:1002284"^^ . "SRM proteingroup level quantitation"^^ . _:genid3955 . _:genid3955 . _:genid3955 . _:genid3955 "Selected Reaction Monitoring proteingroup level quantitation."^^ . _:genid3955 "PSI:PI"^^ . . . "A suite of open source tools for the processing of MS2 proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology."^^ . "TPP"^^ . "MS"^^ . "MS:1002285"^^ . "Trans-Proteomic Pipeline"^^ . _:genid3956 . _:genid3956 . _:genid3956 . _:genid3956 "A suite of open source tools for the processing of MS2 proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology."^^ . _:genid3956 "PSI:PI"^^ . . . _:genid3957 . _:genid3957 . _:genid3957 . _:genid3957 . "A software program that is a component of the Trans-Proteomic Pipeline."^^ . "MS"^^ . "MS:1002286"^^ . "Trans-Proteomic Pipeline software"^^ . _:genid3958 . _:genid3958 . _:genid3958 . _:genid3958 "A software program that is a component of the Trans-Proteomic Pipeline."^^ . _:genid3958 "PSI:PI"^^ . . . "A program in the TPP that calculates PSM probabilities for MS2 proteomics data searched with any of the supported sequence or spectral library search engines via the pepXML format."^^ . "MS"^^ . "MS:1002287"^^ . "PeptideProphet"^^ . _:genid3959 . _:genid3959 . _:genid3959 . _:genid3959 "A program in the TPP that calculates PSM probabilities for MS2 proteomics data searched with any of the supported sequence or spectral library search engines via the pepXML format."^^ . _:genid3959 "PMID:12403597"^^ . _:genid3959 "PMID:23176103"^^ . . . "A program in the TPP that calculates distinct peptide probabilities based on several lines of corroborating evidence including search results from multiple search engines via the pepXML format."^^ . "InterProphet"^^ . "MS"^^ . "MS:1002288"^^ . "iProphet"^^ . _:genid3960 . _:genid3960 . _:genid3960 . _:genid3960 "A program in the TPP that calculates distinct peptide probabilities based on several lines of corroborating evidence including search results from multiple search engines via the pepXML format."^^ . _:genid3960 "PMID:21876204"^^ . . . "A program in the TPP that calculates protein-level probabilities based on input PSM or peptide-level probabilities from PeptideProphet or iProphet. The output is written in the protXML format."^^ . "MS"^^ . "MS:1002289"^^ . "ProteinProphet"^^ . _:genid3961 . _:genid3961 . _:genid3961 . _:genid3961 "A program in the TPP that calculates protein-level probabilities based on input PSM or peptide-level probabilities from PeptideProphet or iProphet. The output is written in the protXML format."^^ . _:genid3961 "PMID:14632076"^^ . . . "A program in the TPP that calculates PSM-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc."^^ . "MS"^^ . "MS:1002290"^^ . "XPRESS"^^ . _:genid3962 . _:genid3962 . _:genid3962 . _:genid3962 "A program in the TPP that calculates PSM-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc."^^ . _:genid3962 "PSI:PI"^^ . . . "A program in the TPP that calculates PSM, peptide, and protein-level abundances based on N-channel isobaric label peptide data such as iTRAQ, TMT, etc."^^ . "MS"^^ . "MS:1002291"^^ . "Libra"^^ . _:genid3963 . _:genid3963 . _:genid3963 . _:genid3963 "A program in the TPP that calculates PSM, peptide, and protein-level abundances based on N-channel isobaric label peptide data such as iTRAQ, TMT, etc."^^ . _:genid3963 "PSI:PI"^^ . . . "A program in the TPP that calculates PTM localization probabilities by re-analyzing the peaks that are available to distinguish between possible modification sites."^^ . "MS"^^ . "MS:1002292"^^ . "PTMProphet"^^ . _:genid3964 . _:genid3964 . _:genid3964 . _:genid3964 "A program in the TPP that calculates PTM localization probabilities by re-analyzing the peaks that are available to distinguish between possible modification sites."^^ . _:genid3964 "PSI:PI"^^ . . . "Bruker Daltonics' SCION series."^^ . "MS"^^ . "MS:1002293"^^ . "Bruker Daltonics SCION series"^^ . _:genid3965 . _:genid3965 . _:genid3965 . _:genid3965 "Bruker Daltonics' SCION series."^^ . _:genid3965 "PSI:MS"^^ . . . "Bruker Daltonics' EVOQ series."^^ . "MS"^^ . "MS:1002294"^^ . "Bruker Daltonics EVOQ series"^^ . _:genid3966 . _:genid3966 . _:genid3966 . _:genid3966 "Bruker Daltonics' EVOQ series."^^ . _:genid3966 "PSI:MS"^^ . . . "Bruker Daltonics' SCION SQ: GC-single quadrupole."^^ . "MS"^^ . "MS:1002295"^^ . "SCION SQ"^^ . _:genid3967 . _:genid3967 . _:genid3967 . _:genid3967 "Bruker Daltonics' SCION SQ: GC-single quadrupole."^^ . _:genid3967 "PSI:MS"^^ . . . "Bruker Daltonics' SCION TQ: GC-triple quadrupole."^^ . "MS"^^ . "MS:1002296"^^ . "SCION TQ"^^ . _:genid3968 . _:genid3968 . _:genid3968 . _:genid3968 "Bruker Daltonics' SCION TQ: GC-triple quadrupole."^^ . _:genid3968 "PSI:MS"^^ . . . "Bruker Daltonics' EVOQ Elite: LC-triple quadrupole."^^ . "MS"^^ . "MS:1002297"^^ . "EVOQ Elite"^^ . _:genid3969 . _:genid3969 . _:genid3969 . _:genid3969 "Bruker Daltonics' EVOQ Elite: LC-triple quadrupole."^^ . _:genid3969 "PSI:MS"^^ . . . "Bruker Daltonics' EVOQ Qube: LC-triple quadrupole."^^ . "MS"^^ . "MS:1002298"^^ . "EVOQ Qube"^^ . _:genid3970 . _:genid3970 . _:genid3970 . _:genid3970 "Bruker Daltonics' EVOQ Qube: LC-triple quadrupole."^^ . _:genid3970 "PSI:MS"^^ . . . "Bruker Daltonics' micrOTOF-Q III: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^ . "MS"^^ . "MS:1002299"^^ . "micrOTOF-Q III"^^ . _:genid3971 . _:genid3971 . _:genid3971 . _:genid3971 "Bruker Daltonics' micrOTOF-Q III: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^ . _:genid3971 "PSI:MS"^^ . . . "Bruker Daltonics' amaZon Speed ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR, GC-APCI, CaptiveSpray."^^ . "MS"^^ . "MS:1002300"^^ . "amaZon Speed ETD"^^ . _:genid3972 . _:genid3972 . _:genid3972 . _:genid3972 "Bruker Daltonics' amaZon Speed ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR, GC-APCI, CaptiveSpray."^^ . _:genid3972 "PSI:MS"^^ . . . "Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^ . "MS"^^ . "MS:1002301"^^ . "amaZon Speed"^^ . _:genid3973 . _:genid3973 . _:genid3973 . _:genid3973 "Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray."^^ . _:genid3973 "PSI:MS"^^ . . . "Bruker Container raw file format."^^ . "MS"^^ . "MS:1002302"^^ . "Bruker Container format"^^ . _:genid3974 . _:genid3974 . _:genid3974 . _:genid3974 "Bruker Container raw file format."^^ . _:genid3974 "PSI:MS"^^ . . . _:genid3975 . _:genid3975 . _:genid3975 . _:genid3975 . "Native identifier (UUID)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002303"^^ . "Bruker Container nativeID format"^^ . _:genid3976 . _:genid3976 . _:genid3976 . _:genid3976 "Native identifier (UUID)."^^ . _:genid3976 "PSI:MS"^^ . _:genid3977 . _:genid3977 . _:genid3977 . _:genid3977 "value-type:xsd:string"^^ . _:genid3977 "The allowed value-type for this CV term."^^ . . _:genid3978 . _:genid3978 . _:genid3978 . _:genid3978 . "Domain range of a numerical value."^^ . "MS"^^ . "MS:1002304"^^ . "domain range"^^ . _:genid3979 . _:genid3979 . _:genid3979 . _:genid3979 "Domain range of a numerical value."^^ . _:genid3979 "PSI:PI"^^ . . . "Value range for probabilities."^^ . "MS"^^ . "MS:1002305"^^ . "value between 0 and 1 inclusive"^^ . _:genid3980 . _:genid3980 . _:genid3980 . _:genid3980 "Value range for probabilities."^^ . _:genid3980 "PSI:PI"^^ . . . "Positive value range."^^ . "MS"^^ . "MS:1002306"^^ . "value greater than zero"^^ . _:genid3981 . _:genid3981 . _:genid3981 . _:genid3981 "Positive value range."^^ . _:genid3981 "PSI:PI"^^ . . . "Type of fragment ion based on where the backbone breaks, such as a y ion or a c ion."^^ . "MS"^^ . "MS:1002307"^^ . "fragmentation ion type"^^ . _:genid3982 . _:genid3982 . _:genid3982 . _:genid3982 "Type of fragment ion based on where the backbone breaks, such as a y ion or a c ion."^^ . _:genid3982 "PSI:PI"^^ . . . "A detector using a fluorescent signal after excitation with light."^^ . "MS"^^ . "MS:1002308"^^ . "fluorescence detector"^^ . _:genid3983 . _:genid3983 . _:genid3983 . _:genid3983 "A detector using a fluorescent signal after excitation with light."^^ . _:genid3983 "PSI:MS"^^ . . . _:genid3984 . _:genid3984 . _:genid3984 . _:genid3984 . _:genid3985 . _:genid3985 . _:genid3985 . _:genid3985 . "The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the PSM."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002309"^^ . "Byonic: Peptide AbsLogProb"^^ . _:genid3986 . _:genid3986 . _:genid3986 . _:genid3986 "The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the PSM."^^ . _:genid3986 "PSI:PI"^^ . _:genid3987 . _:genid3987 . _:genid3987 . _:genid3987 "value-type:xsd:double"^^ . _:genid3987 "The allowed value-type for this CV term."^^ . . . _:genid3988 . _:genid3988 . _:genid3988 . _:genid3988 . _:genid3989 . _:genid3989 . _:genid3989 . _:genid3989 . "The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the protein."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002310"^^ . "Byonic: Protein AbsLogProb"^^ . _:genid3990 . _:genid3990 . _:genid3990 . _:genid3990 "The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the protein."^^ . _:genid3990 "PSI:PI"^^ . _:genid3991 . _:genid3991 . _:genid3991 . _:genid3991 "value-type:xsd:double"^^ . _:genid3991 "The allowed value-type for this CV term."^^ . . . _:genid3992 . _:genid3992 . _:genid3992 . _:genid3992 . _:genid3993 . _:genid3993 . _:genid3993 . _:genid3993 . "The absolute value of the log-base10 Byonic two-dimensional posterior error probability (PEP) of the PSM. The two-dimensional PEP takes into account protein ranking information as well as PSM information."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002311"^^ . "Byonic: Peptide AbsLogProb2D"^^ . _:genid3994 . _:genid3994 . _:genid3994 . _:genid3994 "The absolute value of the log-base10 Byonic two-dimensional posterior error probability (PEP) of the PSM. The two-dimensional PEP takes into account protein ranking information as well as PSM information."^^ . _:genid3994 "PSI:PI"^^ . _:genid3995 . _:genid3995 . _:genid3995 . _:genid3995 "value-type:xsd:double"^^ . _:genid3995 "The allowed value-type for this CV term."^^ . . . "Compression using MS-Numpress linear prediction compression."^^ . "MS"^^ . "MS:1002312"^^ . "MS-Numpress linear prediction compression"^^ . _:genid3996 . _:genid3996 . _:genid3996 . _:genid3996 "Compression using MS-Numpress linear prediction compression."^^ . _:genid3996 "https://github.com/ms-numpress/ms-numpress"^^ . . . "Compression using MS-Numpress positive integer compression."^^ . "MS"^^ . "MS:1002313"^^ . "MS-Numpress positive integer compression"^^ . _:genid3997 . _:genid3997 . _:genid3997 . _:genid3997 "Compression using MS-Numpress positive integer compression."^^ . _:genid3997 "https://github.com/ms-numpress/ms-numpress"^^ . . . "Compression using MS-Numpress short logged float compression."^^ . "MS"^^ . "MS:1002314"^^ . "MS-Numpress short logged float compression"^^ . _:genid3998 . _:genid3998 . _:genid3998 . _:genid3998 "Compression using MS-Numpress short logged float compression."^^ . _:genid3998 "https://github.com/ms-numpress/ms-numpress"^^ . . . "Indicates a consensus result from several search engine runs."^^ . "MS"^^ . "MS:1002315"^^ . "consensus result"^^ . _:genid3999 . _:genid3999 . _:genid3999 . _:genid3999 "Indicates a consensus result from several search engine runs."^^ . _:genid3999 "PSI:PI"^^ . . . _:genid4000 . _:genid4000 . _:genid4000 . _:genid4000 . "Strict confidence probability score."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002316"^^ . "ProteomeDiscoverer:Amanda:high confidence threshold"^^ . _:genid4001 . _:genid4001 . _:genid4001 . _:genid4001 "Strict confidence probability score."^^ . _:genid4001 "PSI:PI"^^ . _:genid4002 . _:genid4002 . _:genid4002 . _:genid4002 "value-type:xsd:int"^^ . _:genid4002 "The allowed value-type for this CV term."^^ . . . _:genid4003 . _:genid4003 . _:genid4003 . _:genid4003 . "Relaxed confidence probability score."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002317"^^ . "ProteomeDiscoverer:Amanda:middle confidence threshold"^^ . _:genid4004 . _:genid4004 . _:genid4004 . _:genid4004 "Relaxed confidence probability score."^^ . _:genid4004 "PSI:PI"^^ . _:genid4005 . _:genid4005 . _:genid4005 . _:genid4005 "value-type:xsd:int"^^ . _:genid4005 "The allowed value-type for this CV term."^^ . . . _:genid4006 . _:genid4006 . _:genid4006 . _:genid4006 . "Flag indicating automatic estimation of the workload level."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002318"^^ . "ProteomeDiscoverer:automatic workload"^^ . _:genid4007 . _:genid4007 . _:genid4007 . _:genid4007 "Flag indicating automatic estimation of the workload level."^^ . _:genid4007 "PSI:PI"^^ . _:genid4008 . _:genid4008 . _:genid4008 . _:genid4008 "value-type:xsd:boolean"^^ . _:genid4008 "The allowed value-type for this CV term."^^ . . . _:genid4009 . _:genid4009 . _:genid4009 . _:genid4009 . "The Amanda score of the scoring function for a PSM."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002319"^^ . "Amanda:AmandaScore"^^ . _:genid4010 . _:genid4010 . _:genid4010 . _:genid4010 "The Amanda score of the scoring function for a PSM."^^ . _:genid4010 "PSI:PI"^^ . _:genid4011 . _:genid4011 . _:genid4011 . _:genid4011 "value-type:xsd:double"^^ . _:genid4011 "The allowed value-type for this CV term."^^ . . . _:genid4012 . _:genid4012 . _:genid4012 . _:genid4012 . "Maximum dynamic modifications per PSM."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002320"^^ . "ProteomeDiscoverer:max differential modifications"^^ . _:genid4013 . _:genid4013 . _:genid4013 . _:genid4013 "Maximum dynamic modifications per PSM."^^ . _:genid4013 "PSI:PI"^^ . _:genid4014 . _:genid4014 . _:genid4014 . _:genid4014 "value-type:xsd:int"^^ . _:genid4014 "The allowed value-type for this CV term."^^ . . . _:genid4015 . _:genid4015 . _:genid4015 . _:genid4015 . "Maximum equal modifications per PSM."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002321"^^ . "ProteomeDiscoverer:max equal modifications"^^ . _:genid4016 . _:genid4016 . _:genid4016 . _:genid4016 "Maximum equal modifications per PSM."^^ . _:genid4016 "PSI:PI"^^ . _:genid4017 . _:genid4017 . _:genid4017 . _:genid4017 "value-type:xsd:int"^^ . _:genid4017 "The allowed value-type for this CV term."^^ . . . _:genid4018 . _:genid4018 . _:genid4018 . _:genid4018 . "Minimum peptide length."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002322"^^ . "ProteomeDiscoverer:min peptide length"^^ . _:genid4019 . _:genid4019 . _:genid4019 . _:genid4019 "Minimum peptide length."^^ . _:genid4019 "PSI:PI"^^ . _:genid4020 . _:genid4020 . _:genid4020 . _:genid4020 "value-type:xsd:int"^^ . _:genid4020 "The allowed value-type for this CV term."^^ . . . _:genid4021 . _:genid4021 . _:genid4021 . _:genid4021 . "Maximum peptide length."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002323"^^ . "ProteomeDiscoverer:max peptide length"^^ . _:genid4022 . _:genid4022 . _:genid4022 . _:genid4022 "Maximum peptide length."^^ . _:genid4022 "PSI:PI"^^ . _:genid4023 . _:genid4023 . _:genid4023 . _:genid4023 "value-type:xsd:int"^^ . _:genid4023 "The allowed value-type for this CV term."^^ . . . _:genid4024 . _:genid4024 . _:genid4024 . _:genid4024 . "Maximum number of same neutral losses."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002324"^^ . "ProteomeDiscoverer:max number neutral loss"^^ . _:genid4025 . _:genid4025 . _:genid4025 . _:genid4025 "Maximum number of same neutral losses."^^ . _:genid4025 "PSI:PI"^^ . _:genid4026 . _:genid4026 . _:genid4026 . _:genid4026 "value-type:xsd:int"^^ . _:genid4026 "The allowed value-type for this CV term."^^ . . . _:genid4027 . _:genid4027 . _:genid4027 . _:genid4027 . "Max number of same neutral losses of modifications."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002325"^^ . "ProteomeDiscoverer:max number neutral loss modifications"^^ . _:genid4028 . _:genid4028 . _:genid4028 . _:genid4028 "Max number of same neutral losses of modifications."^^ . _:genid4028 "PSI:PI"^^ . _:genid4029 . _:genid4029 . _:genid4029 . _:genid4029 "value-type:xsd:int"^^ . _:genid4029 "The allowed value-type for this CV term."^^ . . . _:genid4030 . _:genid4030 . _:genid4030 . _:genid4030 . "Flag for usage of flanking ions."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002326"^^ . "ProteomeDiscoverer:use flanking ions"^^ . _:genid4031 . _:genid4031 . _:genid4031 . _:genid4031 "Flag for usage of flanking ions."^^ . _:genid4031 "PSI:PI"^^ . _:genid4032 . _:genid4032 . _:genid4032 . _:genid4032 "value-type:xsd:boolean"^^ . _:genid4032 "The allowed value-type for this CV term."^^ . . . _:genid4033 . _:genid4033 . _:genid4033 . _:genid4033 . "The maximum number of possible equal modifications per PSM."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002327"^^ . "ProteomeDiscoverer:max number of same modifs"^^ . _:genid4034 . _:genid4034 . _:genid4034 . _:genid4034 "The maximum number of possible equal modifications per PSM."^^ . _:genid4034 "PSI:PI"^^ . _:genid4035 . _:genid4035 . _:genid4035 . _:genid4035 "value-type:xsd:int"^^ . _:genid4035 "The allowed value-type for this CV term."^^ . . . _:genid4036 . _:genid4036 . _:genid4036 . _:genid4036 . "Defines whether a simple deisotoping shall be performed."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002328"^^ . "ProteomeDiscoverer:perform deisotoping"^^ . _:genid4037 . _:genid4037 . _:genid4037 . _:genid4037 "Defines whether a simple deisotoping shall be performed."^^ . _:genid4037 "PSI:PI"^^ . _:genid4038 . _:genid4038 . _:genid4038 . _:genid4038 "value-type:xsd:boolean"^^ . _:genid4038 "The allowed value-type for this CV term."^^ . . . _:genid4039 . _:genid4039 . _:genid4039 . _:genid4039 . "Specifies the fragment ions and neutral losses that are calculated."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002329"^^ . "ProteomeDiscoverer:ion settings"^^ . _:genid4040 . _:genid4040 . _:genid4040 . _:genid4040 "Specifies the fragment ions and neutral losses that are calculated."^^ . _:genid4040 "PSI:PI"^^ . _:genid4041 . _:genid4041 . _:genid4041 . _:genid4041 "value-type:xsd:string"^^ . _:genid4041 "The allowed value-type for this CV term."^^ . . . _:genid4042 . _:genid4042 . _:genid4042 . _:genid4042 . "OBSOLETE ProteomeDiscoverer's 3rd static post-translational modification (PTM) input parameter."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002330"^^ . "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Static Modification (MS:1001645) instead."^^ . "ProteomeDiscoverer:3. Static Modification"^^ . "true"^^ . _:genid4043 . _:genid4043 . _:genid4043 . _:genid4043 "OBSOLETE ProteomeDiscoverer's 3rd static post-translational modification (PTM) input parameter."^^ . _:genid4043 "PSI:PI"^^ . _:genid4044 . _:genid4044 . _:genid4044 . _:genid4044 "value-type:xsd:string"^^ . _:genid4044 "The allowed value-type for this CV term."^^ . . . _:genid4045 . _:genid4045 . _:genid4045 . _:genid4045 . "OBSOLETE ProteomeDiscoverer's 5th dynamic post-translational modification (PTM) input parameter."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002331"^^ . "This term was made obsolete because it's recommended to use ProteomeDiscoverer:Dynamic Modification (MS:1001644) instead."^^ . "ProteomeDiscoverer:5. Dynamic Modification"^^ . "true"^^ . _:genid4046 . _:genid4046 . _:genid4046 . _:genid4046 "OBSOLETE ProteomeDiscoverer's 5th dynamic post-translational modification (PTM) input parameter."^^ . _:genid4046 "PSI:PI"^^ . _:genid4047 . _:genid4047 . _:genid4047 . _:genid4047 "value-type:xsd:string"^^ . _:genid4047 "The allowed value-type for this CV term."^^ . . . "The scientist responsible for personnel, grants, and instrumentation in a functional laboratory group."^^ . "MS"^^ . "MS:1002332"^^ . "lab head"^^ . _:genid4048 . _:genid4048 . _:genid4048 . _:genid4048 "The scientist responsible for personnel, grants, and instrumentation in a functional laboratory group."^^ . _:genid4048 "PSI:PI"^^ . . . "Computer software primarily designed to convert data represented in one format to another format, sometimes with minor data alterations in the process."^^ . "MS"^^ . "MS:1002333"^^ . "conversion software"^^ . _:genid4049 . _:genid4049 . _:genid4049 . _:genid4049 "Computer software primarily designed to convert data represented in one format to another format, sometimes with minor data alterations in the process."^^ . _:genid4049 "PSI:PI"^^ . . . "Java software designed to convert one of several proteomics identification results formats into mzIdentML or PRIDE XML."^^ . "MS"^^ . "MS:1002334"^^ . "ProCon"^^ . _:genid4050 . _:genid4050 . _:genid4050 . _:genid4050 "Java software designed to convert one of several proteomics identification results formats into mzIdentML or PRIDE XML."^^ . _:genid4050 "PSI:PI"^^ . _:genid4050 "http://www.medizinisches-proteom-center.de/procon"^^ . . . "Java software designed to convert one of several proteomics identification results formats into PRIDE XML."^^ . "MS"^^ . "MS:1002335"^^ . "PRIDE Converter2"^^ . _:genid4051 . _:genid4051 . _:genid4051 . _:genid4051 "Java software designed to convert one of several proteomics identification results formats into PRIDE XML."^^ . _:genid4051 "PMID:22949509"^^ . . . "Amanda scoring system for PSM identification."^^ . "MS"^^ . "MS:1002336"^^ . "Amanda"^^ . _:genid4052 . _:genid4052 . _:genid4052 . _:genid4052 "Amanda scoring system for PSM identification."^^ . _:genid4052 "PSI:PI"^^ . . . "Andromeda is a peptide search engine."^^ . "MS"^^ . "MS:1002337"^^ . "Andromeda"^^ . _:genid4053 . _:genid4053 . _:genid4053 . _:genid4053 "Andromeda is a peptide search engine."^^ . _:genid4053 "PSI:PI"^^ . . . _:genid4054 . _:genid4054 . _:genid4054 . _:genid4054 . _:genid4055 . _:genid4055 . _:genid4055 . _:genid4055 . "The probability based score of the Andromeda search engine."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002338"^^ . "Andromeda:score"^^ . _:genid4056 . _:genid4056 . _:genid4056 . _:genid4056 "The probability based score of the Andromeda search engine."^^ . _:genid4056 "PSI:PI"^^ . _:genid4057 . _:genid4057 . _:genid4057 . _:genid4057 "value-type:xsd:double"^^ . _:genid4057 "The allowed value-type for this CV term."^^ . . . _:genid4058 . _:genid4058 . _:genid4058 . _:genid4058 . "Estimation of global false discovery rate of peptides with a post-translational modification."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002339"^^ . "site:global FDR"^^ . _:genid4059 . _:genid4059 . _:genid4059 . _:genid4059 "Estimation of global false discovery rate of peptides with a post-translational modification."^^ . _:genid4059 "PSI:PI"^^ . _:genid4060 . _:genid4060 . _:genid4060 . _:genid4060 "value-type:xsd:double"^^ . _:genid4060 "The allowed value-type for this CV term."^^ . . . _:genid4061 . _:genid4061 . _:genid4061 . _:genid4061 . "Tag that can be added to a ProteomeXchange dataset, to enable the grouping of datasets. One tag can be used for indicating that a given dataset is part of a bigger project, like e.g. the Human Proteome Project."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002340"^^ . "ProteomeXchange project tag"^^ . _:genid4062 . _:genid4062 . _:genid4062 . _:genid4062 "Tag that can be added to a ProteomeXchange dataset, to enable the grouping of datasets. One tag can be used for indicating that a given dataset is part of a bigger project, like e.g. the Human Proteome Project."^^ . _:genid4062 "PSI:PI"^^ . _:genid4063 . _:genid4063 . _:genid4063 . _:genid4063 "value-type:xsd:string"^^ . _:genid4063 "The allowed value-type for this CV term."^^ . . . _:genid4064 . _:genid4064 . _:genid4064 . _:genid4064 . "A putative identified peptide found in a second-pass search of protein sequences selected from a first-pass search."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002341"^^ . "second-pass peptide identification"^^ . _:genid4065 . _:genid4065 . _:genid4065 . _:genid4065 "A putative identified peptide found in a second-pass search of protein sequences selected from a first-pass search."^^ . _:genid4065 "PSI:PI"^^ . _:genid4066 . _:genid4066 . _:genid4066 . _:genid4066 "value-type:xsd:boolean"^^ . _:genid4066 "The allowed value-type for this CV term."^^ . . . . "A framework for differential analysis of mass spectrometry data."^^ . "MS"^^ . "MS:1002342"^^ . "MZmine"^^ . _:genid4067 . _:genid4067 . _:genid4067 . _:genid4067 "A framework for differential analysis of mass spectrometry data."^^ . _:genid4067 "PMID:16403790"^^ . _:genid4067 "PMID:20650010"^^ . . "OBSOLETE Stability type of the ion."^^ . "MS"^^ . "MS:1002343"^^ . "This child of the former purgatory term ion was made obsolete."^^ . "ion stability type"^^ . "true"^^ . _:genid4068 . _:genid4068 . _:genid4068 . _:genid4068 "OBSOLETE Stability type of the ion."^^ . _:genid4068 "PSI:PI"^^ . . . . "Modular Application Toolkit for Chromatography Mass-Spectrometry is an application framework mainly for developers."^^ . "MS"^^ . "MS:1002344"^^ . "Maltcms"^^ . _:genid4069 . _:genid4069 . _:genid4069 . _:genid4069 "Modular Application Toolkit for Chromatography Mass-Spectrometry is an application framework mainly for developers."^^ . _:genid4069 "PSI:PI"^^ . _:genid4069 "http://maltcms.sf.net"^^ . . . "Attribute of a single peptide-spectrum match."^^ . "MS"^^ . "MS:1002345"^^ . "PSM-level attribute"^^ . _:genid4070 . _:genid4070 . _:genid4070 . _:genid4070 "Attribute of a single peptide-spectrum match."^^ . _:genid4070 "PSI:PI"^^ . . . "Protein group level information."^^ . "MS"^^ . "MS:1002346"^^ . "protein group-level identification attribute"^^ . _:genid4071 . _:genid4071 . _:genid4071 . _:genid4071 "Protein group level information."^^ . _:genid4071 "PSI:PI"^^ . . . "Identification confidence metric for a peptide spectrum match."^^ . "MS"^^ . "MS:1002347"^^ . "PSM-level identification statistic"^^ . _:genid4072 . _:genid4072 . _:genid4072 . _:genid4072 "Identification confidence metric for a peptide spectrum match."^^ . _:genid4072 "PSI:PI"^^ . . . "Identification confidence metric for a protein group."^^ . "MS"^^ . "MS:1002348"^^ . "protein group-level identification statistic"^^ . _:genid4073 . _:genid4073 . _:genid4073 . _:genid4073 "Identification confidence metric for a protein group."^^ . _:genid4073 "PSI:PI"^^ . . . "Positive value range less than or equal to 1."^^ . "MS"^^ . "MS:1002349"^^ . "value greater than zero but less than or equal to one"^^ . _:genid4074 . _:genid4074 . _:genid4074 . _:genid4074 "Positive value range less than or equal to 1."^^ . _:genid4074 "PSI:PI"^^ . . . _:genid4075 . _:genid4075 . _:genid4075 . _:genid4075 . _:genid4076 . _:genid4076 . _:genid4076 . _:genid4076 . "Estimation of the global false discovery rate of peptide spectrum matches."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002350"^^ . "PSM-level global FDR"^^ . _:genid4077 . _:genid4077 . _:genid4077 . _:genid4077 "Estimation of the global false discovery rate of peptide spectrum matches."^^ . _:genid4077 "PSI:PI"^^ . _:genid4078 . _:genid4078 . _:genid4078 . _:genid4078 "value-type:xsd:double"^^ . _:genid4078 "The allowed value-type for this CV term."^^ . . . _:genid4079 . _:genid4079 . _:genid4079 . _:genid4079 . _:genid4080 . _:genid4080 . _:genid4080 . _:genid4080 . "Estimation of the local false discovery rate of peptide spectrum matches."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002351"^^ . "PSM-level local FDR"^^ . _:genid4081 . _:genid4081 . _:genid4081 . _:genid4081 "Estimation of the local false discovery rate of peptide spectrum matches."^^ . _:genid4081 "PSI:PI"^^ . _:genid4082 . _:genid4082 . _:genid4082 . _:genid4082 "value-type:xsd:double"^^ . _:genid4082 "The allowed value-type for this CV term."^^ . . . _:genid4083 . _:genid4083 . _:genid4083 . _:genid4083 . _:genid4084 . _:genid4084 . _:genid4084 . _:genid4084 . "Estimation of the p-value for peptide spectrum matches."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002352"^^ . "PSM-level p-value"^^ . _:genid4085 . _:genid4085 . _:genid4085 . _:genid4085 "Estimation of the p-value for peptide spectrum matches."^^ . _:genid4085 "PSI:PI"^^ . _:genid4086 . _:genid4086 . _:genid4086 . _:genid4086 "value-type:xsd:double"^^ . _:genid4086 "The allowed value-type for this CV term."^^ . . . _:genid4087 . _:genid4087 . _:genid4087 . _:genid4087 . _:genid4088 . _:genid4088 . _:genid4088 . _:genid4088 . "Estimation of the e-value for peptide spectrum matches."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002353"^^ . "PSM-level e-value"^^ . _:genid4089 . _:genid4089 . _:genid4089 . _:genid4089 "Estimation of the e-value for peptide spectrum matches."^^ . _:genid4089 "PSI:PI"^^ . _:genid4090 . _:genid4090 . _:genid4090 . _:genid4090 "value-type:xsd:double"^^ . _:genid4090 "The allowed value-type for this CV term."^^ . . . _:genid4091 . _:genid4091 . _:genid4091 . _:genid4091 . _:genid4092 . _:genid4092 . _:genid4092 . _:genid4092 . "Estimation of the q-value for peptide spectrum matches."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002354"^^ . "PSM-level q-value"^^ . _:genid4093 . _:genid4093 . _:genid4093 . _:genid4093 "Estimation of the q-value for peptide spectrum matches."^^ . _:genid4093 "PSI:PI"^^ . _:genid4094 . _:genid4094 . _:genid4094 . _:genid4094 "value-type:xsd:double"^^ . _:genid4094 "The allowed value-type for this CV term."^^ . . . . _:genid4095 . _:genid4095 . _:genid4095 . _:genid4095 . _:genid4096 . _:genid4096 . _:genid4096 . _:genid4096 . "mzidLibrary FDRScore for peptide spectrum matches."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002355"^^ . "PSM-level FDRScore"^^ . _:genid4097 . _:genid4097 . _:genid4097 . _:genid4097 "mzidLibrary FDRScore for peptide spectrum matches."^^ . _:genid4097 "PSI:PI"^^ . _:genid4098 . _:genid4098 . _:genid4098 . _:genid4098 "value-type:xsd:double"^^ . _:genid4098 "The allowed value-type for this CV term."^^ . . . . _:genid4099 . _:genid4099 . _:genid4099 . _:genid4099 . _:genid4100 . _:genid4100 . _:genid4100 . _:genid4100 . "mzidLibrary Combined FDRScore for peptide spectrum matches specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002356"^^ . "PSM-level combined FDRScore"^^ . _:genid4101 . _:genid4101 . _:genid4101 . _:genid4101 "mzidLibrary Combined FDRScore for peptide spectrum matches specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^ . _:genid4101 "PSI:PI"^^ . _:genid4102 . _:genid4102 . _:genid4102 . _:genid4102 "value-type:xsd:double"^^ . _:genid4102 "The allowed value-type for this CV term."^^ . . . _:genid4103 . _:genid4103 . _:genid4103 . _:genid4103 . _:genid4104 . _:genid4104 . _:genid4104 . _:genid4104 . "Probability that the reported peptide ion is truly responsible for some or all of the components of the specified mass spectrum."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002357"^^ . "PSM-level probability"^^ . _:genid4105 . _:genid4105 . _:genid4105 . _:genid4105 "Probability that the reported peptide ion is truly responsible for some or all of the components of the specified mass spectrum."^^ . _:genid4105 "PSI:PI"^^ . _:genid4106 . _:genid4106 . _:genid4106 . _:genid4106 "value-type:xsd:double"^^ . _:genid4106 "The allowed value-type for this CV term."^^ . . . "Search engine specific distinct peptide score."^^ . "MS"^^ . "MS:1002358"^^ . "search engine specific peptide sequence-level identification statistic"^^ . _:genid4107 . _:genid4107 . _:genid4107 . _:genid4107 "Search engine specific distinct peptide score."^^ . _:genid4107 "PSI:PI"^^ . . . _:genid4108 . _:genid4108 . _:genid4108 . _:genid4108 . _:genid4109 . _:genid4109 . _:genid4109 . _:genid4109 . "Estimation of the local false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002359"^^ . "peptide sequence-level local FDR"^^ . _:genid4110 . _:genid4110 . _:genid4110 . _:genid4110 "Estimation of the local false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^ . _:genid4110 "PSI:PI"^^ . _:genid4111 . _:genid4111 . _:genid4111 . _:genid4111 "value-type:xsd:double"^^ . _:genid4111 "The allowed value-type for this CV term."^^ . . . . _:genid4112 . _:genid4112 . _:genid4112 . _:genid4112 . _:genid4113 . _:genid4113 . _:genid4113 . _:genid4113 . "MzidLibrary FDRScore for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002360"^^ . "distinct peptide-level FDRScore"^^ . _:genid4114 . _:genid4114 . _:genid4114 . _:genid4114 "MzidLibrary FDRScore for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^ . _:genid4114 "PSI:PI"^^ . _:genid4115 . _:genid4115 . _:genid4115 . _:genid4115 "value-type:xsd:double"^^ . _:genid4115 "The allowed value-type for this CV term."^^ . . . . _:genid4116 . _:genid4116 . _:genid4116 . _:genid4116 . _:genid4117 . _:genid4117 . _:genid4117 . _:genid4117 . "Combined FDRScore for peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry) specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given peptide, used for integrating results from these distinct pools."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002361"^^ . "distinct peptide-level combined FDRScore"^^ . _:genid4118 . _:genid4118 . _:genid4118 . _:genid4118 "Combined FDRScore for peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry) specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given peptide, used for integrating results from these distinct pools."^^ . _:genid4118 "PSI:PI"^^ . _:genid4119 . _:genid4119 . _:genid4119 . _:genid4119 "value-type:xsd:double"^^ . _:genid4119 "The allowed value-type for this CV term."^^ . . . _:genid4120 . _:genid4120 . _:genid4120 . _:genid4120 . _:genid4121 . _:genid4121 . _:genid4121 . _:genid4121 . "Probability that the reported distinct peptide sequence (irrespective of mass modifications) has been correctly identified via the referenced PSMs."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002362"^^ . "peptide sequence-level probability"^^ . _:genid4122 . _:genid4122 . _:genid4122 . _:genid4122 "Probability that the reported distinct peptide sequence (irrespective of mass modifications) has been correctly identified via the referenced PSMs."^^ . _:genid4122 "PSI:PI"^^ . _:genid4123 . _:genid4123 . _:genid4123 . _:genid4123 "value-type:xsd:double"^^ . _:genid4123 "The allowed value-type for this CV term."^^ . . . "Search engine specific protein scores."^^ . "MS"^^ . "MS:1002363"^^ . "search engine specific score for proteins"^^ . _:genid4124 . _:genid4124 . _:genid4124 . _:genid4124 "Search engine specific protein scores."^^ . _:genid4124 "PSI:PI"^^ . . . _:genid4125 . _:genid4125 . _:genid4125 . _:genid4125 . "Estimation of the local false discovery rate of proteins."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002364"^^ . "protein-level local FDR"^^ . _:genid4126 . _:genid4126 . _:genid4126 . _:genid4126 "Estimation of the local false discovery rate of proteins."^^ . _:genid4126 "PSI:PI"^^ . _:genid4127 . _:genid4127 . _:genid4127 . _:genid4127 "value-type:xsd:double"^^ . _:genid4127 "The allowed value-type for this CV term."^^ . . . _:genid4128 . _:genid4128 . _:genid4128 . _:genid4128 . _:genid4129 . _:genid4129 . _:genid4129 . _:genid4129 . "MzidLibrary FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002365"^^ . "FDRScore for proteins"^^ . _:genid4130 . _:genid4130 . _:genid4130 . _:genid4130 "MzidLibrary FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^ . _:genid4130 "PSI:PI"^^ . _:genid4131 . _:genid4131 . _:genid4131 . _:genid4131 "value-type:xsd:double"^^ . _:genid4131 "The allowed value-type for this CV term."^^ . . . _:genid4132 . _:genid4132 . _:genid4132 . _:genid4132 . _:genid4133 . _:genid4133 . _:genid4133 . _:genid4133 . "MzidLibrary Combined FDRScore for proteins."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002366"^^ . "combined FDRScore for proteins"^^ . _:genid4134 . _:genid4134 . _:genid4134 . _:genid4134 "MzidLibrary Combined FDRScore for proteins."^^ . _:genid4134 "PSI:PI"^^ . _:genid4135 . _:genid4135 . _:genid4135 . _:genid4135 "value-type:xsd:double"^^ . _:genid4135 "The allowed value-type for this CV term."^^ . . . _:genid4136 . _:genid4136 . _:genid4136 . _:genid4136 . _:genid4137 . _:genid4137 . _:genid4137 . _:genid4137 . "Probability that a specific protein sequence has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002367"^^ . "probability for proteins"^^ . _:genid4138 . _:genid4138 . _:genid4138 . _:genid4138 "Probability that a specific protein sequence has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software."^^ . _:genid4138 "PSI:PI"^^ . _:genid4139 . _:genid4139 . _:genid4139 . _:genid4139 "value-type:xsd:double"^^ . _:genid4139 "The allowed value-type for this CV term."^^ . . . "Search engine specific protein group scores."^^ . "MS"^^ . "MS:1002368"^^ . "search engine specific score for protein groups"^^ . _:genid4140 . _:genid4140 . _:genid4140 . _:genid4140 "Search engine specific protein group scores."^^ . _:genid4140 "PSI:PI"^^ . . . _:genid4141 . _:genid4141 . _:genid4141 . _:genid4141 . "Estimation of the global false discovery rate of protein groups."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002369"^^ . "protein group-level global FDR"^^ . _:genid4142 . _:genid4142 . _:genid4142 . _:genid4142 "Estimation of the global false discovery rate of protein groups."^^ . _:genid4142 "PSI:PI"^^ . _:genid4143 . _:genid4143 . _:genid4143 . _:genid4143 "value-type:xsd:double"^^ . _:genid4143 "The allowed value-type for this CV term."^^ . . . _:genid4144 . _:genid4144 . _:genid4144 . _:genid4144 . "Estimation of the local false discovery rate of protein groups."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002370"^^ . "protein group-level local FDR"^^ . _:genid4145 . _:genid4145 . _:genid4145 . _:genid4145 "Estimation of the local false discovery rate of protein groups."^^ . _:genid4145 "PSI:PI"^^ . _:genid4146 . _:genid4146 . _:genid4146 . _:genid4146 "value-type:xsd:double"^^ . _:genid4146 "The allowed value-type for this CV term."^^ . . . _:genid4147 . _:genid4147 . _:genid4147 . _:genid4147 . _:genid4148 . _:genid4148 . _:genid4148 . _:genid4148 . "Estimation of the p-value for protein groups."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002371"^^ . "protein group-level p-value"^^ . _:genid4149 . _:genid4149 . _:genid4149 . _:genid4149 "Estimation of the p-value for protein groups."^^ . _:genid4149 "PSI:PI"^^ . _:genid4150 . _:genid4150 . _:genid4150 . _:genid4150 "value-type:xsd:double"^^ . _:genid4150 "The allowed value-type for this CV term."^^ . . . _:genid4151 . _:genid4151 . _:genid4151 . _:genid4151 . _:genid4152 . _:genid4152 . _:genid4152 . _:genid4152 . "Estimation of the e-value for protein groups."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002372"^^ . "protein group-level e-value"^^ . _:genid4153 . _:genid4153 . _:genid4153 . _:genid4153 "Estimation of the e-value for protein groups."^^ . _:genid4153 "PSI:PI"^^ . _:genid4154 . _:genid4154 . _:genid4154 . _:genid4154 "value-type:xsd:double"^^ . _:genid4154 "The allowed value-type for this CV term."^^ . . . _:genid4155 . _:genid4155 . _:genid4155 . _:genid4155 . _:genid4156 . _:genid4156 . _:genid4156 . _:genid4156 . "Estimation of the q-value for protein groups."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002373"^^ . "protein group-level q-value"^^ . _:genid4157 . _:genid4157 . _:genid4157 . _:genid4157 "Estimation of the q-value for protein groups."^^ . _:genid4157 "PSI:PI"^^ . _:genid4158 . _:genid4158 . _:genid4158 . _:genid4158 "value-type:xsd:double"^^ . _:genid4158 "The allowed value-type for this CV term."^^ . . . _:genid4159 . _:genid4159 . _:genid4159 . _:genid4159 . _:genid4160 . _:genid4160 . _:genid4160 . _:genid4160 . "mzidLibrary FDRScore for protein groups."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002374"^^ . "protein group-level FDRScore"^^ . _:genid4161 . _:genid4161 . _:genid4161 . _:genid4161 "mzidLibrary FDRScore for protein groups."^^ . _:genid4161 "PSI:PI"^^ . _:genid4162 . _:genid4162 . _:genid4162 . _:genid4162 "value-type:xsd:double"^^ . _:genid4162 "The allowed value-type for this CV term."^^ . . . _:genid4163 . _:genid4163 . _:genid4163 . _:genid4163 . _:genid4164 . _:genid4164 . _:genid4164 . _:genid4164 . "mzidLibrary Combined FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002375"^^ . "protein group-level combined FDRScore"^^ . _:genid4165 . _:genid4165 . _:genid4165 . _:genid4165 "mzidLibrary Combined FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools."^^ . _:genid4165 "PMID:19253293"^^ . _:genid4166 . _:genid4166 . _:genid4166 . _:genid4166 "value-type:xsd:double"^^ . _:genid4166 "The allowed value-type for this CV term."^^ . . . _:genid4167 . _:genid4167 . _:genid4167 . _:genid4167 . _:genid4168 . _:genid4168 . _:genid4168 . _:genid4168 . "Probability that at least one of the members of a group of protein sequences has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002376"^^ . "protein group-level probability"^^ . _:genid4169 . _:genid4169 . _:genid4169 . _:genid4169 "Probability that at least one of the members of a group of protein sequences has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software."^^ . _:genid4169 "PSI:PI"^^ . _:genid4170 . _:genid4170 . _:genid4170 . _:genid4170 "value-type:xsd:double"^^ . _:genid4170 "The allowed value-type for this CV term."^^ . . . _:genid4171 . _:genid4171 . _:genid4171 . _:genid4171 . "Specifies the threshold value for relaxed scoring."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002377"^^ . "ProteomeDiscoverer:Relaxed Score Threshold"^^ . _:genid4172 . _:genid4172 . _:genid4172 . _:genid4172 "Specifies the threshold value for relaxed scoring."^^ . _:genid4172 "PSI:PI"^^ . _:genid4173 . _:genid4173 . _:genid4173 . _:genid4173 "value-type:xsd:float"^^ . _:genid4173 "The allowed value-type for this CV term."^^ . . . _:genid4174 . _:genid4174 . _:genid4174 . _:genid4174 . "Specifies the threshold value for strict scoring."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002378"^^ . "ProteomeDiscoverer:Strict Score Threshold"^^ . _:genid4175 . _:genid4175 . _:genid4175 . _:genid4175 "Specifies the threshold value for strict scoring."^^ . _:genid4175 "PSI:PI"^^ . _:genid4176 . _:genid4176 . _:genid4176 . _:genid4176 "value-type:xsd:float"^^ . _:genid4176 "The allowed value-type for this CV term."^^ . . . _:genid4177 . _:genid4177 . _:genid4177 . _:genid4177 . "Cut off score for storing peptides that do not belong to a protein."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002379"^^ . "ProteomeDiscoverer:Peptide Without Protein Cut Off Score"^^ . _:genid4178 . _:genid4178 . _:genid4178 . _:genid4178 "Cut off score for storing peptides that do not belong to a protein."^^ . _:genid4178 "PSI:PI"^^ . _:genid4179 . _:genid4179 . _:genid4179 . _:genid4179 "value-type:xsd:float"^^ . _:genid4179 "The allowed value-type for this CV term."^^ . . . _:genid4180 . _:genid4180 . _:genid4180 . _:genid4180 . "Estimation of the false localization rate for modification site assignment."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002380"^^ . "false localization rate"^^ . _:genid4181 . _:genid4181 . _:genid4181 . _:genid4181 "Estimation of the false localization rate for modification site assignment."^^ . _:genid4181 "PSI:PI"^^ . _:genid4182 . _:genid4182 . _:genid4182 . _:genid4182 "value-type:xsd:double"^^ . _:genid4182 "The allowed value-type for this CV term."^^ . . . . . . "Software for automated LC-MALDI analysis and reporting."^^ . "MS"^^ . "MS:1002381"^^ . "MALDI Solutions LC-MALDI"^^ . _:genid4183 . _:genid4183 . _:genid4183 . _:genid4183 "Software for automated LC-MALDI analysis and reporting."^^ . _:genid4183 "PSI:PI"^^ . . . "Shimadzu MALDI-7090: MALDI-TOF-TOF."^^ . "MS"^^ . "MS:1002382"^^ . "Shimadzu MALDI-7090"^^ . _:genid4184 . _:genid4184 . _:genid4184 . _:genid4184 "Shimadzu MALDI-7090: MALDI-TOF-TOF."^^ . _:genid4184 "PSI:PI"^^ . . . "SCiLS software for data acquisition and analysis."^^ . "MS"^^ . "MS:1002383"^^ . "SCiLS software"^^ . _:genid4185 . _:genid4185 . _:genid4185 . _:genid4185 "SCiLS software for data acquisition and analysis."^^ . _:genid4185 "PSI:MS"^^ . . . . . "SCiLS Lab software."^^ . "MS"^^ . "MS:1002384"^^ . "SCiLS Lab"^^ . _:genid4186 . _:genid4186 . _:genid4186 . _:genid4186 "SCiLS Lab software."^^ . _:genid4186 "PSI:MS"^^ . . . "SCiLS Lab file format."^^ . "MS"^^ . "MS:1002385"^^ . "SCiLS Lab format"^^ . _:genid4187 . _:genid4187 . _:genid4187 . _:genid4187 "SCiLS Lab file format."^^ . _:genid4187 "PSI:MS"^^ . . . "Preprocessing software."^^ . "MS"^^ . "MS:1002386"^^ . "preprocessing software"^^ . _:genid4188 . _:genid4188 . _:genid4188 . _:genid4188 "Preprocessing software."^^ . _:genid4188 "PSI:PI"^^ . . . . "PIA - Protein Inference Algorithms, a toolbox for protein inference and identification analysis."^^ . "MS"^^ . "MS:1002387"^^ . "PIA"^^ . _:genid4189 . _:genid4189 . _:genid4189 . _:genid4189 "PIA - Protein Inference Algorithms, a toolbox for protein inference and identification analysis."^^ . _:genid4189 "PSI:PI"^^ . _:genid4189 "http://www.medizinisches-proteom-center.de/pia"^^ . . . "A compilation of search engine results in the PIA XML format."^^ . "MS"^^ . "MS:1002388"^^ . "PIA XML format"^^ . _:genid4190 . _:genid4190 . _:genid4190 . _:genid4190 "A compilation of search engine results in the PIA XML format."^^ . _:genid4190 "PSI:PI"^^ . . . . "A parameter set for a single PIA analysis."^^ . "MS"^^ . "MS:1002389"^^ . "PIA workflow parameter"^^ . _:genid4191 . _:genid4191 . _:genid4191 . _:genid4191 "A parameter set for a single PIA analysis."^^ . _:genid4191 "PSI:PI"^^ . . . _:genid4192 . _:genid4192 . _:genid4192 . _:genid4192 . "Indicates whether the FDR score was calculated for the input file."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002390"^^ . "PIA:FDRScore calculated"^^ . _:genid4193 . _:genid4193 . _:genid4193 . _:genid4193 "Indicates whether the FDR score was calculated for the input file."^^ . _:genid4193 "PSI:PI"^^ . _:genid4194 . _:genid4194 . _:genid4194 . _:genid4194 "value-type:xsd:boolean"^^ . _:genid4194 "The allowed value-type for this CV term."^^ . . . _:genid4195 . _:genid4195 . _:genid4195 . _:genid4195 . "Indicates whether the combined FDR score was calculated for the PIA compilation."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002391"^^ . "PIA:Combined FDRScore calculated"^^ . _:genid4196 . _:genid4196 . _:genid4196 . _:genid4196 "Indicates whether the combined FDR score was calculated for the PIA compilation."^^ . _:genid4196 "PSI:PI"^^ . _:genid4197 . _:genid4197 . _:genid4197 . _:genid4197 "value-type:xsd:boolean"^^ . _:genid4197 "The allowed value-type for this CV term."^^ . . . _:genid4198 . _:genid4198 . _:genid4198 . _:genid4198 . "Indicates whether PSM sets were created."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002392"^^ . "PIA:PSM sets created"^^ . _:genid4199 . _:genid4199 . _:genid4199 . _:genid4199 "Indicates whether PSM sets were created."^^ . _:genid4199 "PSI:PI"^^ . _:genid4200 . _:genid4200 . _:genid4200 . _:genid4200 "value-type:xsd:boolean"^^ . _:genid4200 "The allowed value-type for this CV term."^^ . . . _:genid4201 . _:genid4201 . _:genid4201 . _:genid4201 . "The number of top identifications per spectrum used for the FDR calculation, 0 means all."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1002393"^^ . "PIA:used top identifications for FDR"^^ . _:genid4202 . _:genid4202 . _:genid4202 . _:genid4202 "The number of top identifications per spectrum used for the FDR calculation, 0 means all."^^ . _:genid4202 "PSI:PI"^^ . _:genid4203 . _:genid4203 . _:genid4203 . _:genid4203 "value-type:xsd:positiveInteger"^^ . _:genid4203 "The allowed value-type for this CV term."^^ . . . _:genid4204 . _:genid4204 . _:genid4204 . _:genid4204 . _:genid4205 . _:genid4205 . _:genid4205 . _:genid4205 . "The score given to a protein by any protein inference."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002394"^^ . "PIA:protein score"^^ . _:genid4206 . _:genid4206 . _:genid4206 . _:genid4206 "The score given to a protein by any protein inference."^^ . _:genid4206 "PSI:PI"^^ . _:genid4207 . _:genid4207 . _:genid4207 . _:genid4207 "value-type:xsd:double"^^ . _:genid4207 "The allowed value-type for this CV term."^^ . . . _:genid4208 . _:genid4208 . _:genid4208 . _:genid4208 . "The used algorithm for the protein inference using PIA."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002395"^^ . "PIA:protein inference"^^ . _:genid4209 . _:genid4209 . _:genid4209 . _:genid4209 "The used algorithm for the protein inference using PIA."^^ . _:genid4209 "PSI:PI"^^ . _:genid4210 . _:genid4210 . _:genid4210 . _:genid4210 "value-type:xsd:string"^^ . _:genid4210 "The allowed value-type for this CV term."^^ . . . _:genid4211 . _:genid4211 . _:genid4211 . _:genid4211 . "A filter used by PIA for the protein inference."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002396"^^ . "PIA:protein inference filter"^^ . _:genid4212 . _:genid4212 . _:genid4212 . _:genid4212 "A filter used by PIA for the protein inference."^^ . _:genid4212 "PSI:PI"^^ . _:genid4213 . _:genid4213 . _:genid4213 . _:genid4213 "value-type:xsd:string"^^ . _:genid4213 "The allowed value-type for this CV term."^^ . . . _:genid4214 . _:genid4214 . _:genid4214 . _:genid4214 . "The used scoring method for the protein inference using PIA."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002397"^^ . "PIA:protein inference scoring"^^ . _:genid4215 . _:genid4215 . _:genid4215 . _:genid4215 "The used scoring method for the protein inference using PIA."^^ . _:genid4215 "PSI:PI"^^ . _:genid4216 . _:genid4216 . _:genid4216 . _:genid4216 "value-type:xsd:string"^^ . _:genid4216 "The allowed value-type for this CV term."^^ . . . _:genid4217 . _:genid4217 . _:genid4217 . _:genid4217 . "The used base score for the protein inference using PIA."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002398"^^ . "PIA:protein inference used score"^^ . _:genid4218 . _:genid4218 . _:genid4218 . _:genid4218 "The used base score for the protein inference using PIA."^^ . _:genid4218 "PSI:PI"^^ . _:genid4219 . _:genid4219 . _:genid4219 . _:genid4219 "value-type:xsd:string"^^ . _:genid4219 "The allowed value-type for this CV term."^^ . . . _:genid4220 . _:genid4220 . _:genid4220 . _:genid4220 . "The method to determine the PSMs used for scoring by the protein inference."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002399"^^ . "PIA:protein inference used PSMs"^^ . _:genid4221 . _:genid4221 . _:genid4221 . _:genid4221 "The method to determine the PSMs used for scoring by the protein inference."^^ . _:genid4221 "PSI:PI"^^ . _:genid4222 . _:genid4222 . _:genid4222 . _:genid4222 "value-type:xsd:string"^^ . _:genid4222 "The allowed value-type for this CV term."^^ . . . _:genid4223 . _:genid4223 . _:genid4223 . _:genid4223 . "A filter used for the report generation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002400"^^ . "PIA:filter"^^ . _:genid4224 . _:genid4224 . _:genid4224 . _:genid4224 "A filter used for the report generation."^^ . _:genid4224 "PSI:PI"^^ . _:genid4225 . _:genid4225 . _:genid4225 . _:genid4225 "value-type:xsd:string"^^ . _:genid4225 "The allowed value-type for this CV term."^^ . . . "At least one protein within each group should be annotated as a leading protein to indicate it has the strongest evidence, or approximately equal evidence as other group members."^^ . "MS"^^ . "MS:1002401"^^ . "leading protein"^^ . _:genid4226 . _:genid4226 . _:genid4226 . _:genid4226 "At least one protein within each group should be annotated as a leading protein to indicate it has the strongest evidence, or approximately equal evidence as other group members."^^ . _:genid4226 "PSI:PI"^^ . . . "Zero to many proteins within each group should be annotated as non-leading to indicate that other proteins have stronger evidence."^^ . "MS"^^ . "MS:1002402"^^ . "non-leading protein"^^ . _:genid4227 . _:genid4227 . _:genid4227 . _:genid4227 "Zero to many proteins within each group should be annotated as non-leading to indicate that other proteins have stronger evidence."^^ . _:genid4227 "PSI:PI"^^ . . . "An arbitrary and optional flag applied to exactly one protein per group to indicate it can serve as the representative of the group, amongst leading proteins, in effect serving as a tiebreaker for approaches that require exactly one group representative."^^ . "MS"^^ . "MS:1002403"^^ . "group representative"^^ . _:genid4228 . _:genid4228 . _:genid4228 . _:genid4228 "An arbitrary and optional flag applied to exactly one protein per group to indicate it can serve as the representative of the group, amongst leading proteins, in effect serving as a tiebreaker for approaches that require exactly one group representative."^^ . _:genid4228 "PSI:PI"^^ . . . _:genid4229 . _:genid4229 . _:genid4229 . _:genid4229 . "The number of proteins that have been identified, which must match the number of groups that pass the threshold in the file."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002404"^^ . "count of identified proteins"^^ . _:genid4230 . _:genid4230 . _:genid4230 . _:genid4230 "The number of proteins that have been identified, which must match the number of groups that pass the threshold in the file."^^ . _:genid4230 "PSI:PI"^^ . _:genid4231 . _:genid4231 . _:genid4231 . _:genid4231 "value-type:xsd:int"^^ . _:genid4231 "The allowed value-type for this CV term."^^ . . . "Details describing a protein cluster."^^ . "MS"^^ . "MS:1002405"^^ . "protein group-level result list attribute"^^ . _:genid4232 . _:genid4232 . _:genid4232 . _:genid4232 "Details describing a protein cluster."^^ . _:genid4232 "PSI:PI"^^ . . . _:genid4233 . _:genid4233 . _:genid4233 . _:genid4233 . "The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002406"^^ . "count of identified clusters"^^ . _:genid4234 . _:genid4234 . _:genid4234 . _:genid4234 "The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file."^^ . _:genid4234 "DOI:10.1002/pmic.201400080"^^ . _:genid4234 "PMID:25092112"^^ . _:genid4235 . _:genid4235 . _:genid4235 . _:genid4235 "value-type:xsd:int"^^ . _:genid4235 "The allowed value-type for this CV term."^^ . . . _:genid4236 . _:genid4236 . _:genid4236 . _:genid4236 . "An identifier applied to protein groups to indicate that they are linked by shared peptides."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002407"^^ . "cluster identifier"^^ . _:genid4237 . _:genid4237 . _:genid4237 . _:genid4237 "An identifier applied to protein groups to indicate that they are linked by shared peptides."^^ . _:genid4237 "PSI:PI"^^ . _:genid4238 . _:genid4238 . _:genid4238 . _:genid4238 "value-type:xsd:int"^^ . _:genid4238 "The allowed value-type for this CV term."^^ . . . _:genid4239 . _:genid4239 . _:genid4239 . _:genid4239 . "The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002408"^^ . "number of distinct protein sequences"^^ . _:genid4240 . _:genid4240 . _:genid4240 . _:genid4240 "The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file."^^ . _:genid4240 "PSI:PI"^^ . _:genid4241 . _:genid4241 . _:genid4241 . _:genid4241 "value-type:xsd:int"^^ . _:genid4241 "The allowed value-type for this CV term."^^ . . . "Assigned to a non-leading protein that has some independent evidence to support its presence relative to the leading protein(s), e.g. the protein may have a unique peptide but not sufficient to be promoted as a leading protein of another group."^^ . "MS"^^ . "MS:1002409"^^ . "marginally distinguished protein"^^ . _:genid4242 . _:genid4242 . _:genid4242 . _:genid4242 "Assigned to a non-leading protein that has some independent evidence to support its presence relative to the leading protein(s), e.g. the protein may have a unique peptide but not sufficient to be promoted as a leading protein of another group."^^ . _:genid4242 "PSI:PI"^^ . . . . "Anubis software for selected reaction monitoring data."^^ . "MS"^^ . "MS:1002410"^^ . "Anubis"^^ . _:genid4243 . _:genid4243 . _:genid4243 . _:genid4243 "Anubis software for selected reaction monitoring data."^^ . _:genid4243 "PSI:PI"^^ . _:genid4243 "http://quantitativeproteomics.org/anubis"^^ . . . "The TraML format for transitions in SRM from the PSI. File extension '.TraML'."^^ . "MS"^^ . "MS:1002411"^^ . "TraML format"^^ . _:genid4244 . _:genid4244 . _:genid4244 . _:genid4244 "The TraML format for transitions in SRM from the PSI. File extension '.TraML'."^^ . _:genid4244 "PSI:PI"^^ . _:genid4244 "http://www.psidev.info/traml"^^ . . . _:genid4245 . _:genid4245 . _:genid4245 . _:genid4245 . "Summed area of all the extracted ion chromatogram for the peptide (e.g. of all the transitions in SRM)."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002412"^^ . "total XIC area"^^ . _:genid4246 . _:genid4246 . _:genid4246 . _:genid4246 "Summed area of all the extracted ion chromatogram for the peptide (e.g. of all the transitions in SRM)."^^ . _:genid4246 "PSI:PI"^^ . _:genid4247 . _:genid4247 . _:genid4247 . _:genid4247 "value-type:xsd:double"^^ . _:genid4247 "The allowed value-type for this CV term."^^ . . . _:genid4248 . _:genid4248 . _:genid4248 . _:genid4248 . "The background area for the quantified transition."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002413"^^ . "product background"^^ . _:genid4249 . _:genid4249 . _:genid4249 . _:genid4249 "The background area for the quantified transition."^^ . _:genid4249 "PSI:PI"^^ . _:genid4250 . _:genid4250 . _:genid4250 . _:genid4250 "value-type:xsd:double"^^ . _:genid4250 "The allowed value-type for this CV term."^^ . . . "Postprocessing software."^^ . "MS"^^ . "MS:1002414"^^ . "postprocessing software"^^ . _:genid4251 . _:genid4251 . _:genid4251 . _:genid4251 "Postprocessing software."^^ . _:genid4251 "PSI:PI"^^ . . . _:genid4252 . _:genid4252 . _:genid4252 . _:genid4252 . "A Boolean attribute to determine whether the protein group has passed the threshold indicated in the file."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002415"^^ . "protein group passes threshold"^^ . _:genid4253 . _:genid4253 . _:genid4253 . _:genid4253 "A Boolean attribute to determine whether the protein group has passed the threshold indicated in the file."^^ . _:genid4253 "PSI:PI"^^ . _:genid4254 . _:genid4254 . _:genid4254 . _:genid4254 "value-type:xsd:boolean"^^ . _:genid4254 "The allowed value-type for this CV term."^^ . . . "Thermo Scientific Orbitrap Fusion."^^ . "MS"^^ . "MS:1002416"^^ . "Orbitrap Fusion"^^ . _:genid4255 . _:genid4255 . _:genid4255 . _:genid4255 "Thermo Scientific Orbitrap Fusion."^^ . _:genid4255 "PSI:PI"^^ . . . "Thermo Scientific Orbitrap Fusion with ETD."^^ . "MS"^^ . "MS:1002417"^^ . "Orbitrap Fusion ETD"^^ . _:genid4256 . _:genid4256 . _:genid4256 . _:genid4256 "Thermo Scientific Orbitrap Fusion with ETD."^^ . _:genid4256 "PSI:PI"^^ . . . "Thermo Scientific TSQ Quantiva MS."^^ . "MS"^^ . "MS:1002418"^^ . "TSQ Quantiva"^^ . _:genid4257 . _:genid4257 . _:genid4257 . _:genid4257 "Thermo Scientific TSQ Quantiva MS."^^ . _:genid4257 "PSI:PI"^^ . . . "Thermo Scientific TSQ Endura MS."^^ . "MS"^^ . "MS:1002419"^^ . "TSQ Endura"^^ . _:genid4258 . _:genid4258 . _:genid4258 . _:genid4258 "Thermo Scientific TSQ Endura MS."^^ . _:genid4258 "PSI:PI"^^ . . . _:genid4259 . _:genid4259 . _:genid4259 . _:genid4259 . "URI that allows access to a PASSEL experiment."^^ . "value-type:xsd:anyURI"^^ . "MS"^^ . "MS:1002420"^^ . "PASSEL experiment URI"^^ . _:genid4260 . _:genid4260 . _:genid4260 . _:genid4260 "URI that allows access to a PASSEL experiment."^^ . _:genid4260 "PSI:PI"^^ . _:genid4261 . _:genid4261 . _:genid4261 . _:genid4261 "value-type:xsd:anyURI"^^ . _:genid4261 "The allowed value-type for this CV term."^^ . . . "Search engine input parameters specific to Paragon."^^ . "MS"^^ . "MS:1002421"^^ . "Paragon input parameter"^^ . _:genid4262 . _:genid4262 . _:genid4262 . _:genid4262 "Search engine input parameters specific to Paragon."^^ . _:genid4262 "PSI:PI"^^ . . . _:genid4263 . _:genid4263 . _:genid4263 . _:genid4263 . "The Paragon method setting indicating the type of sample at the high level, generally meaning the type of quantitation labelling or lack thereof. 'Identification' is indicated for samples without any labels for quantitation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002422"^^ . "Paragon: sample type"^^ . _:genid4264 . _:genid4264 . _:genid4264 . _:genid4264 "The Paragon method setting indicating the type of sample at the high level, generally meaning the type of quantitation labelling or lack thereof. 'Identification' is indicated for samples without any labels for quantitation."^^ . _:genid4264 "PSI:PI"^^ . _:genid4265 . _:genid4265 . _:genid4265 . _:genid4265 "value-type:xsd:string"^^ . _:genid4265 "The allowed value-type for this CV term."^^ . . . _:genid4266 . _:genid4266 . _:genid4266 . _:genid4266 . "The Paragon method setting indicating the actual cysteine alkylation agent; 'None' is indicated if there was no cysteine alkylation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002423"^^ . "Paragon: cysteine alkylation"^^ . _:genid4267 . _:genid4267 . _:genid4267 . _:genid4267 "The Paragon method setting indicating the actual cysteine alkylation agent; 'None' is indicated if there was no cysteine alkylation."^^ . _:genid4267 "PSI:PI"^^ . _:genid4268 . _:genid4268 . _:genid4268 . _:genid4268 "value-type:xsd:string"^^ . _:genid4268 "The allowed value-type for this CV term."^^ . . . _:genid4269 . _:genid4269 . _:genid4269 . _:genid4269 . "The Paragon method setting (translating to a large number of lower level settings) indicating the instrument used or a category of instrument."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002424"^^ . "Paragon: instrument setting"^^ . _:genid4270 . _:genid4270 . _:genid4270 . _:genid4270 "The Paragon method setting (translating to a large number of lower level settings) indicating the instrument used or a category of instrument."^^ . _:genid4270 "PSI:PI"^^ . _:genid4271 . _:genid4271 . _:genid4271 . _:genid4271 "value-type:xsd:string"^^ . _:genid4271 "The allowed value-type for this CV term."^^ . . . _:genid4272 . _:genid4272 . _:genid4272 . _:genid4272 . "The Paragon method setting that controls the two major modes of search effort of the Paragon algorithm: the Rapid mode uses a conventional database search, while the Thorough mode uses a hybrid search, starting with the same approach as the Rapid mode but then follows it with a separate tag-based approach enabling a more extensive search."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002425"^^ . "Paragon: search effort"^^ . _:genid4273 . _:genid4273 . _:genid4273 . _:genid4273 "The Paragon method setting that controls the two major modes of search effort of the Paragon algorithm: the Rapid mode uses a conventional database search, while the Thorough mode uses a hybrid search, starting with the same approach as the Rapid mode but then follows it with a separate tag-based approach enabling a more extensive search."^^ . _:genid4273 "PSI:PI"^^ . _:genid4274 . _:genid4274 . _:genid4274 . _:genid4274 "value-type:xsd:string"^^ . _:genid4274 "The allowed value-type for this CV term."^^ . . . _:genid4275 . _:genid4275 . _:genid4275 . _:genid4275 . "A Paragon method setting that allows the inclusion of large sets of features such as biological modification or substitutions."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002426"^^ . "Paragon: ID focus"^^ . _:genid4276 . _:genid4276 . _:genid4276 . _:genid4276 "A Paragon method setting that allows the inclusion of large sets of features such as biological modification or substitutions."^^ . _:genid4276 "PSI:PI"^^ . _:genid4277 . _:genid4277 . _:genid4277 . _:genid4277 "value-type:xsd:string"^^ . _:genid4277 "The allowed value-type for this CV term."^^ . . . _:genid4278 . _:genid4278 . _:genid4278 . _:genid4278 . "The Paragon method setting that controls whether FDR analysis is conducted."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002427"^^ . "Paragon: FDR analysis"^^ . _:genid4279 . _:genid4279 . _:genid4279 . _:genid4279 "The Paragon method setting that controls whether FDR analysis is conducted."^^ . _:genid4279 "PSI:PI"^^ . _:genid4280 . _:genid4280 . _:genid4280 . _:genid4280 "value-type:xsd:boolean"^^ . _:genid4280 "The allowed value-type for this CV term."^^ . . . _:genid4281 . _:genid4281 . _:genid4281 . _:genid4281 . "The Paragon method setting that controls whether quantitation analysis is conducted."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002428"^^ . "Paragon: quantitation"^^ . _:genid4282 . _:genid4282 . _:genid4282 . _:genid4282 "The Paragon method setting that controls whether quantitation analysis is conducted."^^ . _:genid4282 "PSI:PI"^^ . _:genid4283 . _:genid4283 . _:genid4283 . _:genid4283 "value-type:xsd:boolean"^^ . _:genid4283 "The allowed value-type for this CV term."^^ . . . _:genid4284 . _:genid4284 . _:genid4284 . _:genid4284 . "The Paragon method setting that controls whether the 'Background Correction' analysis is conducted; this processing estimates a correction to the attenuation in extremity ratios that can occur in isobaric quantatitation workflows on complex samples."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002429"^^ . "Paragon: background correction"^^ . _:genid4285 . _:genid4285 . _:genid4285 . _:genid4285 "The Paragon method setting that controls whether the 'Background Correction' analysis is conducted; this processing estimates a correction to the attenuation in extremity ratios that can occur in isobaric quantatitation workflows on complex samples."^^ . _:genid4285 "PSI:PI"^^ . _:genid4286 . _:genid4286 . _:genid4286 . _:genid4286 "value-type:xsd:boolean"^^ . _:genid4286 "The allowed value-type for this CV term."^^ . . . _:genid4287 . _:genid4287 . _:genid4287 . _:genid4287 . "The Paragon method setting that controls whether 'Bias Correction' is invoked in quantitation analysis; this correction is a normalization to set the central tendency of protein ratios to unity."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002430"^^ . "Paragon: bias correction"^^ . _:genid4288 . _:genid4288 . _:genid4288 . _:genid4288 "The Paragon method setting that controls whether 'Bias Correction' is invoked in quantitation analysis; this correction is a normalization to set the central tendency of protein ratios to unity."^^ . _:genid4288 "PSI:PI"^^ . _:genid4289 . _:genid4289 . _:genid4289 . _:genid4289 "value-type:xsd:boolean"^^ . _:genid4289 "The allowed value-type for this CV term."^^ . . . _:genid4290 . _:genid4290 . _:genid4290 . _:genid4290 . "The Paragon method setting that controls which label channel is used as the denominator in calculating relative expression ratios."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002431"^^ . "Paragon: channel to use as denominator in ratios"^^ . _:genid4291 . _:genid4291 . _:genid4291 . _:genid4291 "The Paragon method setting that controls which label channel is used as the denominator in calculating relative expression ratios."^^ . _:genid4291 "PSI:PI"^^ . _:genid4292 . _:genid4292 . _:genid4292 . _:genid4292 "value-type:xsd:string"^^ . _:genid4292 "The allowed value-type for this CV term."^^ . . . "Search engine specific metadata that are not user-controlled settings."^^ . "MS"^^ . "MS:1002432"^^ . "search engine specific input metadata"^^ . _:genid4293 . _:genid4293 . _:genid4293 . _:genid4293 "Search engine specific metadata that are not user-controlled settings."^^ . _:genid4293 "PSI:PI"^^ . . . _:genid4294 . _:genid4294 . _:genid4294 . _:genid4294 . "This metric detects if any changes have been made to the originally installed key control files for the software; if no changes have been made, then the software version and settings are sufficient to enable exact reproduction; if changes have been made, then the modified ParameterTranslation- and ProteinPilot DataDictionary-XML files much also be provided in order to exactly reproduce a result."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002433"^^ . "Paragon: modified data dictionary or parameter translation"^^ . _:genid4295 . _:genid4295 . _:genid4295 . _:genid4295 "This metric detects if any changes have been made to the originally installed key control files for the software; if no changes have been made, then the software version and settings are sufficient to enable exact reproduction; if changes have been made, then the modified ParameterTranslation- and ProteinPilot DataDictionary-XML files much also be provided in order to exactly reproduce a result."^^ . _:genid4295 "PSI:PI"^^ . _:genid4296 . _:genid4296 . _:genid4296 . _:genid4296 "value-type:xsd:boolean"^^ . _:genid4296 "The allowed value-type for this CV term."^^ . . . _:genid4297 . _:genid4297 . _:genid4297 . _:genid4297 . "Number of spectra in a search."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002434"^^ . "number of spectra searched"^^ . _:genid4298 . _:genid4298 . _:genid4298 . _:genid4298 "Number of spectra in a search."^^ . _:genid4298 "PSI:PI"^^ . _:genid4299 . _:genid4299 . _:genid4299 . _:genid4299 "value-type:xsd:int"^^ . _:genid4299 "The allowed value-type for this CV term."^^ . . . _:genid4300 . _:genid4300 . _:genid4300 . _:genid4300 . "The time that a data processing action was started."^^ . "value-type:xsd:dateTime"^^ . "MS"^^ . "MS:1002435"^^ . "data processing start time"^^ . _:genid4301 . _:genid4301 . _:genid4301 . _:genid4301 "The time that a data processing action was started."^^ . _:genid4301 "PSI:MS"^^ . _:genid4302 . _:genid4302 . _:genid4302 . _:genid4302 "value-type:xsd:dateTime"^^ . _:genid4302 "The allowed value-type for this CV term."^^ . . . _:genid4303 . _:genid4303 . _:genid4303 . _:genid4303 . "The Paragon method setting indicating the actual digestion agent - unlike other search tools, this setting does not include options that control partial specificity like 'semitrypsin'; if trypsin is used, trypsin is set, and partially conforming peptides are found in the Thorough mode of search; 'None' should be indicated only if there was really no digestion done."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002436"^^ . "Paragon: digestion"^^ . _:genid4304 . _:genid4304 . _:genid4304 . _:genid4304 "The Paragon method setting indicating the actual digestion agent - unlike other search tools, this setting does not include options that control partial specificity like 'semitrypsin'; if trypsin is used, trypsin is set, and partially conforming peptides are found in the Thorough mode of search; 'None' should be indicated only if there was really no digestion done."^^ . _:genid4304 "PSI:PI"^^ . _:genid4305 . _:genid4305 . _:genid4305 . _:genid4305 "value-type:xsd:string"^^ . _:genid4305 "The allowed value-type for this CV term."^^ . . . _:genid4306 . _:genid4306 . _:genid4306 . _:genid4306 . "The number of decoy sequences, if the concatenated target-decoy approach is used."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1002437"^^ . "number of decoy sequences"^^ . _:genid4307 . _:genid4307 . _:genid4307 . _:genid4307 "The number of decoy sequences, if the concatenated target-decoy approach is used."^^ . _:genid4307 "PSI:PI"^^ . _:genid4308 . _:genid4308 . _:genid4308 . _:genid4308 "value-type:xsd:positiveInteger"^^ . _:genid4308 "The allowed value-type for this CV term."^^ . . _:genid4309 . _:genid4309 . _:genid4309 . _:genid4309 . "Information about the list of PSMs (SpectrumIdentificationList)."^^ . "MS"^^ . "MS:1002438"^^ . "spectrum identification list result details"^^ . _:genid4310 . _:genid4310 . _:genid4310 . _:genid4310 "Information about the list of PSMs (SpectrumIdentificationList)."^^ . _:genid4310 "PSI:PI"^^ . . . "A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is the final set of identifications to be interpreted by consuming software. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum must not be referenced from more than one SpectrumIdentificationResult."^^ . "MS"^^ . "MS:1002439"^^ . "final PSM list"^^ . _:genid4311 . _:genid4311 . _:genid4311 . _:genid4311 "A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is the final set of identifications to be interpreted by consuming software. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum must not be referenced from more than one SpectrumIdentificationResult."^^ . _:genid4311 "PSI:PI"^^ . . . "A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is not the final set of identifications to be interpreted by consuming software. This term should be used when results are provided from multiple search engines for the results from each search engine before they are combined to give consensus identifications. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum may be referenced from more than one SpectrumIdentificationResult."^^ . "MS"^^ . "MS:1002440"^^ . "intermediate PSM list"^^ . _:genid4312 . _:genid4312 . _:genid4312 . _:genid4312 "A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is not the final set of identifications to be interpreted by consuming software. This term should be used when results are provided from multiple search engines for the results from each search engine before they are combined to give consensus identifications. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum may be referenced from more than one SpectrumIdentificationResult."^^ . _:genid4312 "PSI:PI"^^ . . . "AIA Analytical Data Interchange file format for mass spectrometry data."^^ . "MS"^^ . "MS:1002441"^^ . "Andi-MS format"^^ . _:genid4313 . _:genid4313 . _:genid4313 . _:genid4313 "AIA Analytical Data Interchange file format for mass spectrometry data."^^ . _:genid4313 "PSI:PI"^^ . . . "The format of the chromatography file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format."^^ . "MS"^^ . "MS:1002442"^^ . "chromatograph file format"^^ . _:genid4314 . _:genid4314 . _:genid4314 . _:genid4314 "The format of the chromatography file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format."^^ . _:genid4314 "PSI:PI"^^ . . . "AIA Analytical Data Interchange file format for chromatography data."^^ . "MS"^^ . "MS:1002443"^^ . "Andi-CHROM format"^^ . _:genid4315 . _:genid4315 . _:genid4315 . _:genid4315 "AIA Analytical Data Interchange file format for chromatography data."^^ . _:genid4315 "PSI:PI"^^ . . . "The 6420 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^ . "MS"^^ . "MS:1002444"^^ . "6420 Triple Quadrupole LC/MS"^^ . _:genid4316 . _:genid4316 . _:genid4316 . _:genid4316 "The 6420 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^ . _:genid4316 "PSI:MS"^^ . . . "The 6460 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds Agilent Jet Stream (AJS) technology to increase sensitivity."^^ . "MS"^^ . "MS:1002445"^^ . "6460 Triple Quadrupole LC/MS"^^ . _:genid4317 . _:genid4317 . _:genid4317 . _:genid4317 "The 6460 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds Agilent Jet Stream (AJS) technology to increase sensitivity."^^ . _:genid4317 "PSI:MS"^^ . . . "The 6490 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds the Agilent iFunnel technology to increase sensitivity."^^ . "MS"^^ . "MS:1002446"^^ . "6490 Triple Quadrupole LC/MS"^^ . _:genid4318 . _:genid4318 . _:genid4318 . _:genid4318 "The 6490 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds the Agilent iFunnel technology to increase sensitivity."^^ . _:genid4318 "PSI:MS"^^ . . . _:genid4319 . _:genid4319 . _:genid4319 . _:genid4319 . "The Paragon method setting indicating a list of one or more 'special factors', which generally capture secondary effects (relative to other settings) as a set of probabilities of modification features that override the assumed levels. For example the 'gel-based ID' special factor causes an increase probability of oxidation on several resides because of the air exposure impact on a gel, in addition to other effects."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002447"^^ . "Paragon:special factor"^^ . _:genid4320 . _:genid4320 . _:genid4320 . _:genid4320 "The Paragon method setting indicating a list of one or more 'special factors', which generally capture secondary effects (relative to other settings) as a set of probabilities of modification features that override the assumed levels. For example the 'gel-based ID' special factor causes an increase probability of oxidation on several resides because of the air exposure impact on a gel, in addition to other effects."^^ . _:genid4320 "PSI:PI"^^ . _:genid4321 . _:genid4321 . _:genid4321 . _:genid4321 "value-type:xsd:string"^^ . _:genid4321 "The allowed value-type for this CV term."^^ . . . _:genid4322 . _:genid4322 . _:genid4322 . _:genid4322 . "The PEAKS inChorus peptide score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002448"^^ . "PEAKS:inChorusPeptideScore"^^ . _:genid4323 . _:genid4323 . _:genid4323 . _:genid4323 "The PEAKS inChorus peptide score."^^ . _:genid4323 "PSI:PI"^^ . _:genid4324 . _:genid4324 . _:genid4324 . _:genid4324 "value-type:xsd:double"^^ . _:genid4324 "The allowed value-type for this CV term."^^ . . . _:genid4325 . _:genid4325 . _:genid4325 . _:genid4325 . "The PEAKS inChorus protein score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002449"^^ . "PEAKS:inChorusProteinScore"^^ . _:genid4326 . _:genid4326 . _:genid4326 . _:genid4326 "The PEAKS inChorus protein score."^^ . _:genid4326 "PSI:PI"^^ . _:genid4327 . _:genid4327 . _:genid4327 . _:genid4327 "value-type:xsd:double"^^ . _:genid4327 "The allowed value-type for this CV term."^^ . . . "Ion b-H3PO4: b ion with lost phosphoric acid."^^ . "MS"^^ . "MS:1002450"^^ . "param: b ion-H3PO4 DEPRECATED"^^ . _:genid4328 . _:genid4328 . _:genid4328 . _:genid4328 "Ion b-H3PO4: b ion with lost phosphoric acid."^^ . _:genid4328 "PSI:PI"^^ . . . "Ion y-H3PO4: y ion with lost phosphoric acid."^^ . "MS"^^ . "MS:1002451"^^ . "param: y ion-H3PO4 DEPRECATED"^^ . _:genid4329 . _:genid4329 . _:genid4329 . _:genid4329 "Ion y-H3PO4: y ion with lost phosphoric acid."^^ . _:genid4329 "PSI:PI"^^ . . . . "The Maltcms Graphical User Interface."^^ . "MS"^^ . "MS:1002452"^^ . "Maui"^^ . _:genid4330 . _:genid4330 . _:genid4330 . _:genid4330 "The Maltcms Graphical User Interface."^^ . _:genid4330 "PSI:PI"^^ . _:genid4330 "http://maltcms.sf.net"^^ . . . "No fixed modifications are included as a parameter for the search, and therefore they are not reported."^^ . "MS"^^ . "MS:1002453"^^ . "No fixed modifications searched"^^ . _:genid4331 . _:genid4331 . _:genid4331 . _:genid4331 "No fixed modifications are included as a parameter for the search, and therefore they are not reported."^^ . _:genid4331 "PSI:PI"^^ . . . "No variable modifications are included as a parameter for the search, and therefore they are not reported."^^ . "MS"^^ . "MS:1002454"^^ . "No variable modifications searched"^^ . _:genid4332 . _:genid4332 . _:genid4332 . _:genid4332 "No variable modifications are included as a parameter for the search, and therefore they are not reported."^^ . _:genid4332 "PSI:PI"^^ . . . . "OBSOLETE Neutral loss of water."^^ . "MS"^^ . "MS:1002455"^^ . "This term was obsoleted because it should be replaced by MS:1000336 with value H2O."^^ . "H2O neutral loss"^^ . "true"^^ . _:genid4333 . _:genid4333 . _:genid4333 . _:genid4333 "OBSOLETE Neutral loss of water."^^ . _:genid4333 "PSI:PI"^^ . . . . "OBSOLETE Neutral loss of ammonia."^^ . "MS"^^ . "MS:1002456"^^ . "This term was obsoleted because it should be replaced by MS:1000336 with value NH3."^^ . "NH3 neutral loss"^^ . "true"^^ . _:genid4334 . _:genid4334 . _:genid4334 . _:genid4334 "OBSOLETE Neutral loss of ammonia."^^ . _:genid4334 "PSI:PI"^^ . . . . "OBSOLETE Neutral loss of phosphoric acid."^^ . "MS"^^ . "MS:1002457"^^ . "This term was obsoleted because it should be replaced by MS:1000336 with value H3PO4."^^ . "H3PO4 neutral loss"^^ . "true"^^ . _:genid4335 . _:genid4335 . _:genid4335 . _:genid4335 "OBSOLETE Neutral loss of phosphoric acid."^^ . _:genid4335 "PSI:PI"^^ . . . "PeptideShaker is a software for the interpretation of proteomics identification results."^^ . "MS"^^ . "MS:1002458"^^ . "PeptideShaker"^^ . _:genid4336 . _:genid4336 . _:genid4336 . _:genid4336 "PeptideShaker is a software for the interpretation of proteomics identification results."^^ . _:genid4336 "PSI:PI"^^ . _:genid4336 "http://peptide-shaker.googlecode.com"^^ . . . "MS Amanda csv output format."^^ . "MS"^^ . "MS:1002459"^^ . "MS Amanda csv format"^^ . _:genid4337 . _:genid4337 . _:genid4337 . _:genid4337 "MS Amanda csv output format."^^ . _:genid4337 "PSI:PI"^^ . . . _:genid4338 . _:genid4338 . _:genid4338 . _:genid4338 . "Estimation of the global false negative rate of protein groups."^^ . "MS"^^ . "MS:1002460"^^ . "protein group-level global FNR"^^ . _:genid4339 . _:genid4339 . _:genid4339 . _:genid4339 "Estimation of the global false negative rate of protein groups."^^ . _:genid4339 "PSI:PI"^^ . . . "Estimation of the global confidence of protein groups."^^ . "MS"^^ . "MS:1002461"^^ . "protein group-level confidence"^^ . _:genid4340 . _:genid4340 . _:genid4340 . _:genid4340 "Estimation of the global confidence of protein groups."^^ . _:genid4340 "PSI:PI"^^ . . . _:genid4341 . _:genid4341 . _:genid4341 . _:genid4341 . "Estimation of the global false negative rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^ . "MS"^^ . "MS:1002462"^^ . "peptide sequence-level global FNR"^^ . _:genid4342 . _:genid4342 . _:genid4342 . _:genid4342 "Estimation of the global false negative rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^ . _:genid4342 "PSI:PI"^^ . . . "Estimation of the global confidence for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^ . "MS"^^ . "MS:1002463"^^ . "peptide sequence-level global confidence"^^ . _:genid4343 . _:genid4343 . _:genid4343 . _:genid4343 "Estimation of the global confidence for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)."^^ . _:genid4343 "PSI:PI"^^ . . . _:genid4344 . _:genid4344 . _:genid4344 . _:genid4344 . "Estimation of the global false negative rate of peptide spectrum matches."^^ . "MS"^^ . "MS:1002464"^^ . "PSM-level global FNR"^^ . _:genid4345 . _:genid4345 . _:genid4345 . _:genid4345 "Estimation of the global false negative rate of peptide spectrum matches."^^ . _:genid4345 "PSI:PI"^^ . . . "Estimation of the global confidence of peptide spectrum matches."^^ . "MS"^^ . "MS:1002465"^^ . "PSM-level global confidence"^^ . _:genid4346 . _:genid4346 . _:genid4346 . _:genid4346 "Estimation of the global confidence of peptide spectrum matches."^^ . _:genid4346 "PSI:PI"^^ . . . _:genid4347 . _:genid4347 . _:genid4347 . _:genid4347 . _:genid4348 . _:genid4348 . _:genid4348 . _:genid4348 . "The probability based PeptideShaker PSM score."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002466"^^ . "PeptideShaker PSM score"^^ . _:genid4349 . _:genid4349 . _:genid4349 . _:genid4349 "The probability based PeptideShaker PSM score."^^ . _:genid4349 "PSI:PI"^^ . _:genid4350 . _:genid4350 . _:genid4350 . _:genid4350 "value-type:xsd:float"^^ . _:genid4350 "The allowed value-type for this CV term."^^ . . . _:genid4351 . _:genid4351 . _:genid4351 . _:genid4351 . _:genid4352 . _:genid4352 . _:genid4352 . _:genid4352 . "The probability based PeptideShaker PSM confidence."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002467"^^ . "PeptideShaker PSM confidence"^^ . _:genid4353 . _:genid4353 . _:genid4353 . _:genid4353 "The probability based PeptideShaker PSM confidence."^^ . _:genid4353 "PSI:PI"^^ . _:genid4354 . _:genid4354 . _:genid4354 . _:genid4354 "value-type:xsd:float"^^ . _:genid4354 "The allowed value-type for this CV term."^^ . . . . _:genid4355 . _:genid4355 . _:genid4355 . _:genid4355 . _:genid4356 . _:genid4356 . _:genid4356 . _:genid4356 . "The probability based PeptideShaker peptide score."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002468"^^ . "PeptideShaker peptide score"^^ . _:genid4357 . _:genid4357 . _:genid4357 . _:genid4357 "The probability based PeptideShaker peptide score."^^ . _:genid4357 "PSI:PI"^^ . _:genid4358 . _:genid4358 . _:genid4358 . _:genid4358 "value-type:xsd:float"^^ . _:genid4358 "The allowed value-type for this CV term."^^ . . . _:genid4359 . _:genid4359 . _:genid4359 . _:genid4359 . _:genid4360 . _:genid4360 . _:genid4360 . _:genid4360 . "The probability based PeptideShaker peptide confidence."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002469"^^ . "PeptideShaker peptide confidence"^^ . _:genid4361 . _:genid4361 . _:genid4361 . _:genid4361 "The probability based PeptideShaker peptide confidence."^^ . _:genid4361 "PSI:PI"^^ . _:genid4362 . _:genid4362 . _:genid4362 . _:genid4362 "value-type:xsd:float"^^ . _:genid4362 "The allowed value-type for this CV term."^^ . . . . _:genid4363 . _:genid4363 . _:genid4363 . _:genid4363 . _:genid4364 . _:genid4364 . _:genid4364 . _:genid4364 . "The probability based PeptideShaker protein group score."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002470"^^ . "PeptideShaker protein group score"^^ . _:genid4365 . _:genid4365 . _:genid4365 . _:genid4365 "The probability based PeptideShaker protein group score."^^ . _:genid4365 "PSI:PI"^^ . _:genid4366 . _:genid4366 . _:genid4366 . _:genid4366 "value-type:xsd:float"^^ . _:genid4366 "The allowed value-type for this CV term."^^ . . . _:genid4367 . _:genid4367 . _:genid4367 . _:genid4367 . _:genid4368 . _:genid4368 . _:genid4368 . _:genid4368 . "The probability based PeptideShaker protein group confidence."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002471"^^ . "PeptideShaker protein group confidence"^^ . _:genid4369 . _:genid4369 . _:genid4369 . _:genid4369 "The probability based PeptideShaker protein group confidence."^^ . _:genid4369 "PSI:PI"^^ . _:genid4370 . _:genid4370 . _:genid4370 . _:genid4370 "value-type:xsd:float"^^ . _:genid4370 "The allowed value-type for this CV term."^^ . . . "A collision-induced dissociation process that occurs in a trap-type collision cell."^^ . "MS"^^ . "MS:1002472"^^ . "trap-type collision-induced dissociation"^^ . _:genid4371 . _:genid4371 . _:genid4371 . _:genid4371 "A collision-induced dissociation process that occurs in a trap-type collision cell."^^ . _:genid4371 "PSI:PI"^^ . . . "The description of the ion fragment series (including charges and neutral losses) that are considered by the search engine."^^ . "MS"^^ . "MS:1002473"^^ . "ion series considered in search"^^ . _:genid4372 . _:genid4372 . _:genid4372 . _:genid4372 "The description of the ion fragment series (including charges and neutral losses) that are considered by the search engine."^^ . _:genid4372 "PSI:PI"^^ . . . _:genid4373 . _:genid4373 . _:genid4373 . _:genid4373 . _:genid4374 . _:genid4374 . _:genid4374 . _:genid4374 . "The sum of peptide-level scores for peptides mapped only to non-canonical gene models within the group."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002474"^^ . "ProteoAnnotator:non-canonical gene model score"^^ . _:genid4375 . _:genid4375 . _:genid4375 . _:genid4375 "The sum of peptide-level scores for peptides mapped only to non-canonical gene models within the group."^^ . _:genid4375 "PSI:PI"^^ . _:genid4376 . _:genid4376 . _:genid4376 . _:genid4376 "value-type:xsd:double"^^ . _:genid4376 "The allowed value-type for this CV term."^^ . . . _:genid4377 . _:genid4377 . _:genid4377 . _:genid4377 . "The count of the number of peptide sequences mapped to non-canonical gene models only within the group."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002475"^^ . "ProteoAnnotator:count alternative peptides"^^ . _:genid4378 . _:genid4378 . _:genid4378 . _:genid4378 "The count of the number of peptide sequences mapped to non-canonical gene models only within the group."^^ . _:genid4378 "PSI:PI"^^ . _:genid4379 . _:genid4379 . _:genid4379 . _:genid4379 "value-type:xsd:int"^^ . _:genid4379 "The allowed value-type for this CV term."^^ . . . . _:genid4380 . _:genid4380 . _:genid4380 . _:genid4380 . _:genid4381 . _:genid4381 . _:genid4381 . _:genid4381 . "Drift time of an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This time might refer to the central value of a bin into which all ions within a narrow range of drift time have been aggregated."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002476"^^ . "ion mobility drift time"^^ . _:genid4382 . _:genid4382 . _:genid4382 . _:genid4382 "Drift time of an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This time might refer to the central value of a bin into which all ions within a narrow range of drift time have been aggregated."^^ . _:genid4382 "PSI:MS"^^ . _:genid4383 . _:genid4383 . _:genid4383 . _:genid4383 "value-type:xsd:float"^^ . _:genid4383 "The allowed value-type for this CV term."^^ . . . _:genid4384 . _:genid4384 . _:genid4384 . _:genid4384 . _:genid4385 . _:genid4385 . _:genid4385 . _:genid4385 . _:genid4386 . _:genid4386 . _:genid4386 . _:genid4386 . "Array of population mean ion mobility values from a drift time device, reported in seconds (or milliseconds), corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002477"^^ . "mean ion mobility drift time array"^^ . _:genid4387 . _:genid4387 . _:genid4387 . _:genid4387 "Array of population mean ion mobility values from a drift time device, reported in seconds (or milliseconds), corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . _:genid4387 "PSI:MS"^^ . _:genid4388 . _:genid4388 . _:genid4388 . _:genid4388 "value-type:xsd:float"^^ . _:genid4388 "The allowed value-type for this CV term."^^ . . . "Array of mean charge values where the mean charge is calculated as a weighted mean of the charges of individual peaks that are aggregated into a processed spectrum."^^ . "binary-data-type:MS:1000521"^^ . "MS"^^ . "MS:1002478"^^ . "mean charge array"^^ . _:genid4389 . _:genid4389 . _:genid4389 . _:genid4389 "Array of mean charge values where the mean charge is calculated as a weighted mean of the charges of individual peaks that are aggregated into a processed spectrum."^^ . _:genid4389 "PSI:MS"^^ . _:genid4390 . _:genid4390 . _:genid4390 . _:genid4390 "binary-data-type:MS:1000521"^^ . _:genid4390 "32-bit float"^^ . . _:genid4391 . _:genid4391 . _:genid4391 . _:genid4391 . "Regular expression."^^ . "MS"^^ . "MS:1002479"^^ . "regular expression"^^ . _:genid4392 . _:genid4392 . _:genid4392 . _:genid4392 "Regular expression."^^ . _:genid4392 "PSI:PI"^^ . . . "(10[.][0-9]{4,}(?:[.][0-9]+)*/(?:(?![\"&'<>])[^ \n\\r\n\\v\\f])+)."^^ . "MS"^^ . "MS:1002480"^^ . "regular expression for a digital object identifier (DOI)"^^ . _:genid4393 . _:genid4393 . _:genid4393 . _:genid4393 "(10[.][0-9]{4,}(?:[.][0-9]+)*/(?:(?![\"&'<>])[^ \n\\r\n\\v\\f])+)."^^ . _:genid4393 "PSI:PI"^^ . _:genid4393 "http://dx.doi.org/"^^ . . . "A collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV."^^ . "MS"^^ . "MS:1002481"^^ . "higher energy beam-type collision-induced dissociation"^^ . _:genid4394 . _:genid4394 . _:genid4394 . _:genid4394 "A collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV."^^ . _:genid4394 "PSI:MS"^^ . . . "Estimated statistical threshold."^^ . "MS"^^ . "MS:1002482"^^ . "statistical threshold"^^ . _:genid4395 . _:genid4395 . _:genid4395 . _:genid4395 "Estimated statistical threshold."^^ . _:genid4395 "PSI:MS"^^ . . . "Estimated statistical threshold at PSM-level."^^ . "MS"^^ . "MS:1002483"^^ . "PSM-level statistical threshold"^^ . _:genid4396 . _:genid4396 . _:genid4396 . _:genid4396 "Estimated statistical threshold at PSM-level."^^ . _:genid4396 "PSI:MS"^^ . . . "Estimated statistical threshold at peptide-level."^^ . "MS"^^ . "MS:1002484"^^ . "peptide-level statistical threshold"^^ . _:genid4397 . _:genid4397 . _:genid4397 . _:genid4397 "Estimated statistical threshold at peptide-level."^^ . _:genid4397 "PSI:MS"^^ . . . "Estimated statistical threshold at protein-level."^^ . "MS"^^ . "MS:1002485"^^ . "protein-level statistical threshold"^^ . _:genid4398 . _:genid4398 . _:genid4398 . _:genid4398 "Estimated statistical threshold at protein-level."^^ . _:genid4398 "PSI:MS"^^ . . . "Estimated statistical threshold at protein group-level."^^ . "MS"^^ . "MS:1002486"^^ . "protein group-level statistical threshold"^^ . _:genid4399 . _:genid4399 . _:genid4399 . _:genid4399 "Estimated statistical threshold at protein group-level."^^ . _:genid4399 "PSI:PI"^^ . . . _:genid4400 . _:genid4400 . _:genid4400 . _:genid4400 . "Dataset identifier issued by the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002487"^^ . "MassIVE dataset identifier"^^ . _:genid4401 . _:genid4401 . _:genid4401 . _:genid4401 "Dataset identifier issued by the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . _:genid4401 "PSI:PI"^^ . _:genid4402 . _:genid4402 . _:genid4402 . _:genid4402 "value-type:xsd:string"^^ . _:genid4402 "The allowed value-type for this CV term."^^ . . . _:genid4403 . _:genid4403 . _:genid4403 . _:genid4403 . "URI that allows the access to one dataset in the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . "value-type:xsd:anyURI"^^ . "MS"^^ . "MS:1002488"^^ . "MassIVE dataset URI"^^ . _:genid4404 . _:genid4404 . _:genid4404 . _:genid4404 "URI that allows the access to one dataset in the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . _:genid4404 "PSI:PI"^^ . _:genid4405 . _:genid4405 . _:genid4405 . _:genid4405 "value-type:xsd:anyURI"^^ . _:genid4405 "The allowed value-type for this CV term."^^ . . . _:genid4406 . _:genid4406 . _:genid4406 . _:genid4406 . "Details describing a special processing."^^ . "MS"^^ . "MS:1002489"^^ . "special processing"^^ . _:genid4407 . _:genid4407 . _:genid4407 . _:genid4407 "Details describing a special processing."^^ . _:genid4407 "PSI:PI"^^ . . . "Peptide-level scoring performed."^^ . "MS"^^ . "MS:1002490"^^ . "peptide-level scoring"^^ . _:genid4408 . _:genid4408 . _:genid4408 . _:genid4408 "Peptide-level scoring performed."^^ . _:genid4408 "PSI:PI"^^ . . . "Modification localization scoring performed."^^ . "MS"^^ . "MS:1002491"^^ . "modification localization scoring"^^ . _:genid4409 . _:genid4409 . _:genid4409 . _:genid4409 "Modification localization scoring performed."^^ . _:genid4409 "PSI:PI"^^ . . . "Consensus multiple search engine approach performed."^^ . "MS"^^ . "MS:1002492"^^ . "consensus scoring"^^ . _:genid4410 . _:genid4410 . _:genid4410 . _:genid4410 "Consensus multiple search engine approach performed."^^ . _:genid4410 "PSI:PI"^^ . . . "Sample pre-fractionation performed."^^ . "MS"^^ . "MS:1002493"^^ . "sample pre-fractionation"^^ . _:genid4411 . _:genid4411 . _:genid4411 . _:genid4411 "Sample pre-fractionation performed."^^ . _:genid4411 "PSI:PI"^^ . . . "Cross-linking search performed."^^ . "MS"^^ . "MS:1002494"^^ . "cross-linking search"^^ . _:genid4412 . _:genid4412 . _:genid4412 . _:genid4412 "Cross-linking search performed."^^ . _:genid4412 "PSI:PI"^^ . . . "No special processing performed."^^ . "MS"^^ . "MS:1002495"^^ . "no special processing"^^ . _:genid4413 . _:genid4413 . _:genid4413 . _:genid4413 "No special processing performed."^^ . _:genid4413 "PSI:PI"^^ . . . "Group PSMs by distinct peptide sequence ignoring modifications."^^ . "MS"^^ . "MS:1002496"^^ . "group PSMs by sequence"^^ . _:genid4414 . _:genid4414 . _:genid4414 . _:genid4414 "Group PSMs by distinct peptide sequence ignoring modifications."^^ . _:genid4414 "PSI:PI"^^ . . . "Group PSMs by distinct peptide sequence with taking modifications into account."^^ . "MS"^^ . "MS:1002497"^^ . "group PSMs by sequence with modifications"^^ . _:genid4415 . _:genid4415 . _:genid4415 . _:genid4415 "Group PSMs by distinct peptide sequence with taking modifications into account."^^ . _:genid4415 "PSI:PI"^^ . . . "Group PSMs by distinct peptide sequence with taking modifications and charge into account."^^ . "MS"^^ . "MS:1002498"^^ . "group PSMs by sequence with modifications and charge"^^ . _:genid4416 . _:genid4416 . _:genid4416 . _:genid4416 "Group PSMs by distinct peptide sequence with taking modifications and charge into account."^^ . _:genid4416 "PSI:PI"^^ . . . "OBSOLETE Peptide level score."^^ . "MS"^^ . "MS:1002499"^^ . "This term was obsoleted because it was never intended to go in the CV."^^ . "peptide level score"^^ . "true"^^ . _:genid4417 . _:genid4417 . _:genid4417 . _:genid4417 "OBSOLETE Peptide level score."^^ . _:genid4417 "PSI:PI"^^ . . . _:genid4418 . _:genid4418 . _:genid4418 . _:genid4418 . "A Boolean attribute to determine whether the peptide has passed the threshold indicated in the file."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002500"^^ . "peptide passes threshold"^^ . _:genid4419 . _:genid4419 . _:genid4419 . _:genid4419 "A Boolean attribute to determine whether the peptide has passed the threshold indicated in the file."^^ . _:genid4419 "PSI:PI"^^ . _:genid4420 . _:genid4420 . _:genid4420 . _:genid4420 "value-type:xsd:boolean"^^ . _:genid4420 "The allowed value-type for this CV term."^^ . . . "Indicating that no PSM threshold was used."^^ . "MS"^^ . "MS:1002501"^^ . "no PSM threshold"^^ . _:genid4421 . _:genid4421 . _:genid4421 . _:genid4421 "Indicating that no PSM threshold was used."^^ . _:genid4421 "PSI:PI"^^ . . . "Indicating that no peptide-level threshold was used."^^ . "MS"^^ . "MS:1002502"^^ . "no peptide-level threshold"^^ . _:genid4422 . _:genid4422 . _:genid4422 . _:genid4422 "Indicating that no peptide-level threshold was used."^^ . _:genid4422 "PSI:PI"^^ . . . "Flags a PSM that it is used for peptide-level scoring."^^ . "MS"^^ . "MS:1002503"^^ . "PSM is used for peptide-level scoring"^^ . _:genid4423 . _:genid4423 . _:genid4423 . _:genid4423 "Flags a PSM that it is used for peptide-level scoring."^^ . _:genid4423 "PSI:PI"^^ . . . _:genid4424 . _:genid4424 . _:genid4424 . _:genid4424 . "The order of modifications to be referenced elsewhere in the document."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002504"^^ . "modification index"^^ . _:genid4425 . _:genid4425 . _:genid4425 . _:genid4425 "The order of modifications to be referenced elsewhere in the document."^^ . _:genid4425 "PSI:PI"^^ . _:genid4426 . _:genid4426 . _:genid4426 . _:genid4426 "value-type:xsd:int"^^ . _:genid4426 "The allowed value-type for this CV term."^^ . . . "([:digit:]+:[0|1]{1}.[:digit:]+[Ee]{0,1}[+-]{0,1}[:digit:]*:[:digit:]+[|]{1}[:digit:]+:(true|false){1})."^^ . "MS"^^ . "MS:1002505"^^ . "regular expression for modification localization scoring"^^ . _:genid4427 . _:genid4427 . _:genid4427 . _:genid4427 "([:digit:]+:[0|1]{1}.[:digit:]+[Ee]{0,1}[+-]{0,1}[:digit:]*:[:digit:]+[|]{1}[:digit:]+:(true|false){1})."^^ . _:genid4427 "PSI:PI"^^ . . . "Modification position score."^^ . "MS"^^ . "MS:1002506"^^ . "modification position score"^^ . _:genid4428 . _:genid4428 . _:genid4428 . _:genid4428 "Modification position score."^^ . _:genid4428 "PSI:PI"^^ . . . _:genid4429 . _:genid4429 . _:genid4429 . _:genid4429 . _:genid4430 . _:genid4430 . _:genid4430 . _:genid4430 . "Mod position score: false localization rate."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002507"^^ . "modification rescoring:false localization rate"^^ . _:genid4431 . _:genid4431 . _:genid4431 . _:genid4431 "Mod position score: false localization rate."^^ . _:genid4431 "PSI:PI"^^ . _:genid4432 . _:genid4432 . _:genid4432 . _:genid4432 "value-type:xsd:string"^^ . _:genid4432 "The allowed value-type for this CV term."^^ . . . "Cross-linking attribute."^^ . "MS"^^ . "MS:1002508"^^ . "cross-linking attribute"^^ . _:genid4433 . _:genid4433 . _:genid4433 . _:genid4433 "Cross-linking attribute."^^ . _:genid4433 "PSI:PI"^^ . . . _:genid4434 . _:genid4434 . _:genid4434 . _:genid4434 . "The Cross-linking donor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002509"^^ . "cross-link donor"^^ . _:genid4435 . _:genid4435 . _:genid4435 . _:genid4435 "The Cross-linking donor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order."^^ . _:genid4435 "PSI:PI"^^ . _:genid4436 . _:genid4436 . _:genid4436 . _:genid4436 "value-type:xsd:string"^^ . _:genid4436 "The allowed value-type for this CV term."^^ . . . _:genid4437 . _:genid4437 . _:genid4437 . _:genid4437 . "Cross-linking acceptor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002510"^^ . "cross-link acceptor"^^ . _:genid4438 . _:genid4438 . _:genid4438 . _:genid4438 "Cross-linking acceptor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order."^^ . _:genid4438 "PSI:PI"^^ . _:genid4439 . _:genid4439 . _:genid4439 . _:genid4439 "value-type:xsd:string"^^ . _:genid4439 "The allowed value-type for this CV term."^^ . . . _:genid4440 . _:genid4440 . _:genid4440 . _:genid4440 . "Cross-linked spectrum identification item."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002511"^^ . "cross-link spectrum identification item"^^ . _:genid4441 . _:genid4441 . _:genid4441 . _:genid4441 "Cross-linked spectrum identification item."^^ . _:genid4441 "PSI:PI"^^ . _:genid4442 . _:genid4442 . _:genid4442 . _:genid4442 "value-type:xsd:int"^^ . _:genid4442 "The allowed value-type for this CV term."^^ . . . _:genid4443 . _:genid4443 . _:genid4443 . _:genid4443 . "Cross-linking scoring value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002512"^^ . "cross-linking score"^^ . _:genid4444 . _:genid4444 . _:genid4444 . _:genid4444 "Cross-linking scoring value."^^ . _:genid4444 "PSI:PI"^^ . _:genid4445 . _:genid4445 . _:genid4445 . _:genid4445 "value-type:xsd:double"^^ . _:genid4445 "The allowed value-type for this CV term."^^ . . . _:genid4446 . _:genid4446 . _:genid4446 . _:genid4446 . "The absolute abundance of protein in a cell."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002513"^^ . "molecules per cell"^^ . _:genid4447 . _:genid4447 . _:genid4447 . _:genid4447 "The absolute abundance of protein in a cell."^^ . _:genid4447 "PSI:PI"^^ . _:genid4448 . _:genid4448 . _:genid4448 . _:genid4448 "value-type:xsd:double"^^ . _:genid4448 "The allowed value-type for this CV term."^^ . . . "Absolute quantitation analysis."^^ . "MS"^^ . "MS:1002514"^^ . "absolute quantitation analysis"^^ . _:genid4449 . _:genid4449 . _:genid4449 . _:genid4449 "Absolute quantitation analysis."^^ . _:genid4449 "PSI:PI"^^ . . . _:genid4450 . _:genid4450 . _:genid4450 . _:genid4450 . "States whether an internal peptide reference is used or not in absolute quantitation analysis."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002515"^^ . "internal peptide reference used"^^ . _:genid4451 . _:genid4451 . _:genid4451 . _:genid4451 "States whether an internal peptide reference is used or not in absolute quantitation analysis."^^ . _:genid4451 "PSI:PI"^^ . _:genid4452 . _:genid4452 . _:genid4452 . _:genid4452 "value-type:xsd:boolean"^^ . _:genid4452 "The allowed value-type for this CV term."^^ . . . _:genid4453 . _:genid4453 . _:genid4453 . _:genid4453 . "States whether an internal protein reference is used or not in absolute quantitation analysis."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002516"^^ . "internal protein reference used"^^ . _:genid4454 . _:genid4454 . _:genid4454 . _:genid4454 "States whether an internal protein reference is used or not in absolute quantitation analysis."^^ . _:genid4454 "PSI:PI"^^ . _:genid4455 . _:genid4455 . _:genid4455 . _:genid4455 "value-type:xsd:boolean"^^ . _:genid4455 "The allowed value-type for this CV term."^^ . . . _:genid4456 . _:genid4456 . _:genid4456 . _:genid4456 . "The absolute abundance of the spiked in reference peptide or protein used for absolute quantitation analysis."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002517"^^ . "internal reference abundance"^^ . _:genid4457 . _:genid4457 . _:genid4457 . _:genid4457 "The absolute abundance of the spiked in reference peptide or protein used for absolute quantitation analysis."^^ . _:genid4457 "PSI:PI"^^ . _:genid4458 . _:genid4458 . _:genid4458 . _:genid4458 "value-type:xsd:double"^^ . _:genid4458 "The allowed value-type for this CV term."^^ . . . _:genid4459 . _:genid4459 . _:genid4459 . _:genid4459 . "The data type normalised abundance for protein groups produced by Progenesis LC-MS."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002518"^^ . "Progenesis:protein group normalised abundance"^^ . _:genid4460 . _:genid4460 . _:genid4460 . _:genid4460 "The data type normalised abundance for protein groups produced by Progenesis LC-MS."^^ . _:genid4460 "PSI:PI"^^ . _:genid4461 . _:genid4461 . _:genid4461 . _:genid4461 "value-type:xsd:double"^^ . _:genid4461 "The allowed value-type for this CV term."^^ . . . _:genid4462 . _:genid4462 . _:genid4462 . _:genid4462 . "The data type raw abundance for protein groups produced by Progenesis LC-MS."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002519"^^ . "Progenesis:protein group raw abundance"^^ . _:genid4463 . _:genid4463 . _:genid4463 . _:genid4463 "The data type raw abundance for protein groups produced by Progenesis LC-MS."^^ . _:genid4463 "PSI:PI"^^ . _:genid4464 . _:genid4464 . _:genid4464 . _:genid4464 "value-type:xsd:double"^^ . _:genid4464 "The allowed value-type for this CV term."^^ . . . _:genid4465 . _:genid4465 . _:genid4465 . _:genid4465 . "Peptide group identifier for peptide-level stats."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002520"^^ . "peptide group ID"^^ . _:genid4466 . _:genid4466 . _:genid4466 . _:genid4466 "Peptide group identifier for peptide-level stats."^^ . _:genid4466 "PSI:PI"^^ . _:genid4467 . _:genid4467 . _:genid4467 . _:genid4467 "value-type:xsd:string"^^ . _:genid4467 "The allowed value-type for this CV term."^^ . . . "A technique in which mass spectra are acquired in a spatially resolved manner. This is typically achieved by scanning a laser or primary ion beam over a sample and acquiring a mass spectrum at each position."^^ . "MS"^^ . "MS:1002521"^^ . "mass spectrometry imaging"^^ . _:genid4468 . _:genid4468 . _:genid4468 . _:genid4468 "A technique in which mass spectra are acquired in a spatially resolved manner. This is typically achieved by scanning a laser or primary ion beam over a sample and acquiring a mass spectrum at each position."^^ . _:genid4468 "PSI:PI"^^ . . . _:genid4469 . _:genid4469 . _:genid4469 . _:genid4469 . "Determine 1st static terminal post-translational modifications (PTMs)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002522"^^ . "ProteomeDiscoverer:1. Static Terminal Modification"^^ . _:genid4470 . _:genid4470 . _:genid4470 . _:genid4470 "Determine 1st static terminal post-translational modifications (PTMs)."^^ . _:genid4470 "PSI:PI"^^ . _:genid4471 . _:genid4471 . _:genid4471 . _:genid4471 "value-type:xsd:string"^^ . _:genid4471 "The allowed value-type for this CV term."^^ . . . "Thermo Scientific Q Exactive."^^ . "MS"^^ . "MS:1002523"^^ . "Q Exactive HF"^^ . _:genid4472 . _:genid4472 . _:genid4472 . _:genid4472 "Thermo Scientific Q Exactive."^^ . _:genid4472 "PSI:PI"^^ . . . "Thermo Scientific PepFinder BioPharma analysis software."^^ . "MS"^^ . "MS:1002524"^^ . "PepFinder"^^ . _:genid4473 . _:genid4473 . _:genid4473 . _:genid4473 "Thermo Scientific PepFinder BioPharma analysis software."^^ . _:genid4473 "PSI:PI"^^ . . . "Thermo Scientific TSQ 8000 Evo MS."^^ . "MS"^^ . "MS:1002525"^^ . "TSQ 8000 Evo"^^ . _:genid4474 . _:genid4474 . _:genid4474 . _:genid4474 "Thermo Scientific TSQ 8000 Evo MS."^^ . _:genid4474 "PSI:PI"^^ . . . "Thermo Scientific Exactive Plus MS."^^ . "MS"^^ . "MS:1002526"^^ . "Exactive Plus"^^ . _:genid4475 . _:genid4475 . _:genid4475 . _:genid4475 "Thermo Scientific Exactive Plus MS."^^ . _:genid4475 "PSI:PI"^^ . . . "Instrument specific scan properties that are associated with a value."^^ . "MS"^^ . "MS:1002527"^^ . "instrument specific scan attribute"^^ . _:genid4476 . _:genid4476 . _:genid4476 . _:genid4476 "Instrument specific scan properties that are associated with a value."^^ . _:genid4476 "PSI:PI"^^ . . . "Synchronous prefilter selection."^^ . "SPS"^^ . "MS"^^ . "MS:1002528"^^ . "synchronous prefilter selection"^^ . _:genid4477 . _:genid4477 . _:genid4477 . _:genid4477 "Synchronous prefilter selection."^^ . _:genid4477 "PSI:PI"^^ . . . "A data array of resolution values."^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000523"^^ . "MS"^^ . "MS:1002529"^^ . "resolution array"^^ . _:genid4478 . _:genid4478 . _:genid4478 . _:genid4478 "A data array of resolution values."^^ . _:genid4478 "PSI:MS"^^ . _:genid4479 . _:genid4479 . _:genid4479 . _:genid4479 "binary-data-type:MS:1000521"^^ . _:genid4479 "32-bit float"^^ . _:genid4480 . _:genid4480 . _:genid4480 . _:genid4480 "binary-data-type:MS:1000523"^^ . _:genid4480 "64-bit float"^^ . . . "A data array of signal baseline values (the signal in the absence of analytes)."^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000523"^^ . "MS"^^ . "MS:1002530"^^ . "baseline array"^^ . _:genid4481 . _:genid4481 . _:genid4481 . _:genid4481 "A data array of signal baseline values (the signal in the absence of analytes)."^^ . _:genid4481 "PSI:MS"^^ . _:genid4482 . _:genid4482 . _:genid4482 . _:genid4482 "binary-data-type:MS:1000521"^^ . _:genid4482 "32-bit float"^^ . _:genid4483 . _:genid4483 . _:genid4483 . _:genid4483 "binary-data-type:MS:1000523"^^ . _:genid4483 "64-bit float"^^ . . . "SQLite-based file format created at Pacific Northwest National Lab. It stores an intermediate analysis of ion-mobility mass spectrometry data."^^ . "MS"^^ . "MS:1002531"^^ . "UIMF format"^^ . _:genid4484 . _:genid4484 . _:genid4484 . _:genid4484 "SQLite-based file format created at Pacific Northwest National Lab. It stores an intermediate analysis of ion-mobility mass spectrometry data."^^ . _:genid4484 "PSI:MS"^^ . . . "Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger frameType=xsd:nonNegativeInteger."^^ . "MS"^^ . "MS:1002532"^^ . "UIMF nativeID format"^^ . _:genid4485 . _:genid4485 . _:genid4485 . _:genid4485 "Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger frameType=xsd:nonNegativeInteger."^^ . _:genid4485 "PSI:MS"^^ . . . "SCIEX TripleTOF 6600, a quadrupole - quadrupole - time-of-flight mass spectrometer."^^ . "MS"^^ . "MS:1002533"^^ . "TripleTOF 6600"^^ . _:genid4486 . _:genid4486 . _:genid4486 . _:genid4486 "SCIEX TripleTOF 6600, a quadrupole - quadrupole - time-of-flight mass spectrometer."^^ . _:genid4486 "PSI:MS"^^ . . . _:genid4487 . _:genid4487 . _:genid4487 . _:genid4487 . _:genid4488 . _:genid4488 . _:genid4488 . _:genid4488 . "The ProLuCID result 'XCorr'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002534"^^ . "ProLuCID:xcorr"^^ . _:genid4489 . _:genid4489 . _:genid4489 . _:genid4489 "The ProLuCID result 'XCorr'."^^ . _:genid4489 "PSI:PI"^^ . _:genid4490 . _:genid4490 . _:genid4490 . _:genid4490 "value-type:xsd:double"^^ . _:genid4490 "The allowed value-type for this CV term."^^ . . . _:genid4491 . _:genid4491 . _:genid4491 . _:genid4491 . "The ProLuCID result 'DeltaCn'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002535"^^ . "ProLuCID:deltacn"^^ . _:genid4492 . _:genid4492 . _:genid4492 . _:genid4492 "The ProLuCID result 'DeltaCn'."^^ . _:genid4492 "PSI:PI"^^ . _:genid4493 . _:genid4493 . _:genid4493 . _:genid4493 "value-type:xsd:double"^^ . _:genid4493 "The allowed value-type for this CV term."^^ . . . _:genid4494 . _:genid4494 . _:genid4494 . _:genid4494 . _:genid4495 . _:genid4495 . _:genid4495 . _:genid4495 . "D-Score for PTM site location at the PSM-level."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002536"^^ . "D-Score"^^ . _:genid4496 . _:genid4496 . _:genid4496 . _:genid4496 "D-Score for PTM site location at the PSM-level."^^ . _:genid4496 "PMID:23307401"^^ . _:genid4497 . _:genid4497 . _:genid4497 . _:genid4497 "value-type:xsd:string"^^ . _:genid4497 "The allowed value-type for this CV term."^^ . . . _:genid4498 . _:genid4498 . _:genid4498 . _:genid4498 . _:genid4499 . _:genid4499 . _:genid4499 . _:genid4499 . "MD-Score for PTM site location at the PSM-level."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002537"^^ . "MD-Score"^^ . _:genid4500 . _:genid4500 . _:genid4500 . _:genid4500 "MD-Score for PTM site location at the PSM-level."^^ . _:genid4500 "PMID:21057138"^^ . _:genid4501 . _:genid4501 . _:genid4501 . _:genid4501 "value-type:xsd:string"^^ . _:genid4501 "The allowed value-type for this CV term."^^ . . . _:genid4502 . _:genid4502 . _:genid4502 . _:genid4502 . "Localization confidence metric for a post translational modification (PTM)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002538"^^ . "PTM localization confidence metric"^^ . _:genid4503 . _:genid4503 . _:genid4503 . _:genid4503 "Localization confidence metric for a post translational modification (PTM)."^^ . _:genid4503 "PSI:PI"^^ . _:genid4504 . _:genid4504 . _:genid4504 . _:genid4504 "value-type:xsd:string"^^ . _:genid4504 "The allowed value-type for this CV term."^^ . . . _:genid4505 . _:genid4505 . _:genid4505 . _:genid4505 . "PeptideShaker quality criteria for the confidence of PTM localizations."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002539"^^ . "PeptideShaker PTM confidence type"^^ . _:genid4506 . _:genid4506 . _:genid4506 . _:genid4506 "PeptideShaker quality criteria for the confidence of PTM localizations."^^ . _:genid4506 "PSI:PI"^^ . _:genid4507 . _:genid4507 . _:genid4507 . _:genid4507 "value-type:xsd:string"^^ . _:genid4507 "The allowed value-type for this CV term."^^ . . . _:genid4508 . _:genid4508 . _:genid4508 . _:genid4508 . "PeptideShaker quality criteria for the confidence of PSM's."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002540"^^ . "PeptideShaker PSM confidence type"^^ . _:genid4509 . _:genid4509 . _:genid4509 . _:genid4509 "PeptideShaker quality criteria for the confidence of PSM's."^^ . _:genid4509 "PSI:PI"^^ . _:genid4510 . _:genid4510 . _:genid4510 . _:genid4510 "value-type:xsd:string"^^ . _:genid4510 "The allowed value-type for this CV term."^^ . . . _:genid4511 . _:genid4511 . _:genid4511 . _:genid4511 . "PeptideShaker quality criteria for the confidence of peptide identifications."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002541"^^ . "PeptideShaker peptide confidence type"^^ . _:genid4512 . _:genid4512 . _:genid4512 . _:genid4512 "PeptideShaker quality criteria for the confidence of peptide identifications."^^ . _:genid4512 "PSI:PI"^^ . _:genid4513 . _:genid4513 . _:genid4513 . _:genid4513 "value-type:xsd:string"^^ . _:genid4513 "The allowed value-type for this CV term."^^ . . . _:genid4514 . _:genid4514 . _:genid4514 . _:genid4514 . "PeptideShaker quality criteria for the confidence of protein identifications."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002542"^^ . "PeptideShaker protein confidence type"^^ . _:genid4515 . _:genid4515 . _:genid4515 . _:genid4515 "PeptideShaker quality criteria for the confidence of protein identifications."^^ . _:genid4515 "PSI:PI"^^ . _:genid4516 . _:genid4516 . _:genid4516 . _:genid4516 "value-type:xsd:string"^^ . _:genid4516 "The allowed value-type for this CV term."^^ . . . "Target/Decoy based FDR estimation for cross-linking peptide-identifications."^^ . "MS"^^ . "MS:1002543"^^ . "xiFDR"^^ . _:genid4517 . _:genid4517 . _:genid4517 . _:genid4517 "Target/Decoy based FDR estimation for cross-linking peptide-identifications."^^ . _:genid4517 "PSI:PI"^^ . . . "Search engine for cross-linked peptides."^^ . "MS"^^ . "MS:1002544"^^ . "xi"^^ . _:genid4518 . _:genid4518 . _:genid4518 . _:genid4518 "Search engine for cross-linked peptides."^^ . _:genid4518 "PSI:PI"^^ . . . _:genid4519 . _:genid4519 . _:genid4519 . _:genid4519 . _:genid4520 . _:genid4520 . _:genid4520 . _:genid4520 . "The xi result 'Score'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002545"^^ . "xi:score"^^ . _:genid4521 . _:genid4521 . _:genid4521 . _:genid4521 "The xi result 'Score'."^^ . _:genid4521 "PSI:PI"^^ . _:genid4522 . _:genid4522 . _:genid4522 . _:genid4522 "value-type:xsd:double"^^ . _:genid4522 "The allowed value-type for this CV term."^^ . . . . "A software package to convert Skyline report to mzQuantML."^^ . "MS"^^ . "MS:1002546"^^ . "Skyline mzQuantML converter"^^ . _:genid4523 . _:genid4523 . _:genid4523 . _:genid4523 "A software package to convert Skyline report to mzQuantML."^^ . _:genid4523 "PSI:PI"^^ . _:genid4523 "http://code.google.com/p/srm-mzquantml-convertor/"^^ . . . "A normalized spectral abundance factor (NSAF)."^^ . "MS"^^ . "MS:1002547"^^ . "normalized spectral abundance factor"^^ . _:genid4524 . _:genid4524 . _:genid4524 . _:genid4524 "A normalized spectral abundance factor (NSAF)."^^ . _:genid4524 "DOI:10.1021/pr060161n"^^ . _:genid4524 "PMID:16944946"^^ . . . "A distributed normalized spectral abundance factor (dNSAF)."^^ . "MS"^^ . "MS:1002548"^^ . "distributed normalized spectral abundance factor"^^ . _:genid4525 . _:genid4525 . _:genid4525 . _:genid4525 "A distributed normalized spectral abundance factor (dNSAF)."^^ . _:genid4525 "DOI:10.1021/ac9023999"^^ . _:genid4525 "PMID:20166708"^^ . . . "Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence."^^ . "MS"^^ . "MS:1002549"^^ . "PTM localization distinct peptide-level statistic"^^ . _:genid4526 . _:genid4526 . _:genid4526 . _:genid4526 "Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence."^^ . _:genid4526 "PSI:PI"^^ . . . _:genid4527 . _:genid4527 . _:genid4527 . _:genid4527 . _:genid4528 . _:genid4528 . _:genid4528 . _:genid4528 . "phosphoRS score for PTM site location at the peptide-level."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002550"^^ . "peptide:phosphoRS score"^^ . _:genid4529 . _:genid4529 . _:genid4529 . _:genid4529 "phosphoRS score for PTM site location at the peptide-level."^^ . _:genid4529 "PSI:PI"^^ . _:genid4530 . _:genid4530 . _:genid4530 . _:genid4530 "value-type:xsd:string"^^ . _:genid4530 "The allowed value-type for this CV term."^^ . . . _:genid4531 . _:genid4531 . _:genid4531 . _:genid4531 . _:genid4532 . _:genid4532 . _:genid4532 . _:genid4532 . "A-score for PTM site location at the peptide-level."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002551"^^ . "peptide:Ascore"^^ . _:genid4533 . _:genid4533 . _:genid4533 . _:genid4533 "A-score for PTM site location at the peptide-level."^^ . _:genid4533 "PSI:PI"^^ . _:genid4534 . _:genid4534 . _:genid4534 . _:genid4534 "value-type:xsd:string"^^ . _:genid4534 "The allowed value-type for this CV term."^^ . . . _:genid4535 . _:genid4535 . _:genid4535 . _:genid4535 . _:genid4536 . _:genid4536 . _:genid4536 . _:genid4536 . "H-Score for peptide phosphorylation site location at the peptide-level."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002552"^^ . "peptide:H-Score"^^ . _:genid4537 . _:genid4537 . _:genid4537 . _:genid4537 "H-Score for peptide phosphorylation site location at the peptide-level."^^ . _:genid4537 "PSI:PI"^^ . _:genid4538 . _:genid4538 . _:genid4538 . _:genid4538 "value-type:xsd:string"^^ . _:genid4538 "The allowed value-type for this CV term."^^ . . . _:genid4539 . _:genid4539 . _:genid4539 . _:genid4539 . _:genid4540 . _:genid4540 . _:genid4540 . _:genid4540 . "D-Score for PTM site location at the peptide-level."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002553"^^ . "peptide:D-Score"^^ . _:genid4541 . _:genid4541 . _:genid4541 . _:genid4541 "D-Score for PTM site location at the peptide-level."^^ . _:genid4541 "PSI:PI"^^ . _:genid4542 . _:genid4542 . _:genid4542 . _:genid4542 "value-type:xsd:string"^^ . _:genid4542 "The allowed value-type for this CV term."^^ . . . _:genid4543 . _:genid4543 . _:genid4543 . _:genid4543 . _:genid4544 . _:genid4544 . _:genid4544 . _:genid4544 . "MD-Score for PTM site location at the peptide-level."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002554"^^ . "peptide:MD-Score"^^ . _:genid4545 . _:genid4545 . _:genid4545 . _:genid4545 "MD-Score for PTM site location at the peptide-level."^^ . _:genid4545 "PSI:PI"^^ . _:genid4546 . _:genid4546 . _:genid4546 . _:genid4546 "value-type:xsd:string"^^ . _:genid4546 "The allowed value-type for this CV term."^^ . . . "Threshold for PTM site location score."^^ . "MS"^^ . "MS:1002555"^^ . "PTM localization score threshold"^^ . _:genid4547 . _:genid4547 . _:genid4547 . _:genid4547 "Threshold for PTM site location score."^^ . _:genid4547 "PSI:PI"^^ . . . _:genid4548 . _:genid4548 . _:genid4548 . _:genid4548 . "Threshold for Ascore PTM site location score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002556"^^ . "Ascore threshold"^^ . _:genid4549 . _:genid4549 . _:genid4549 . _:genid4549 "Threshold for Ascore PTM site location score."^^ . _:genid4549 "PSI:PI"^^ . _:genid4550 . _:genid4550 . _:genid4550 . _:genid4550 "value-type:xsd:double"^^ . _:genid4550 "The allowed value-type for this CV term."^^ . . . _:genid4551 . _:genid4551 . _:genid4551 . _:genid4551 . "Threshold for D-score PTM site location score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002557"^^ . "D-Score threshold"^^ . _:genid4552 . _:genid4552 . _:genid4552 . _:genid4552 "Threshold for D-score PTM site location score."^^ . _:genid4552 "PSI:PI"^^ . _:genid4553 . _:genid4553 . _:genid4553 . _:genid4553 "value-type:xsd:double"^^ . _:genid4553 "The allowed value-type for this CV term."^^ . . . _:genid4554 . _:genid4554 . _:genid4554 . _:genid4554 . "Threshold for MD-score PTM site location score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002558"^^ . "MD-Score threshold"^^ . _:genid4555 . _:genid4555 . _:genid4555 . _:genid4555 "Threshold for MD-score PTM site location score."^^ . _:genid4555 "PSI:PI"^^ . _:genid4556 . _:genid4556 . _:genid4556 . _:genid4556 "value-type:xsd:double"^^ . _:genid4556 "The allowed value-type for this CV term."^^ . . . _:genid4557 . _:genid4557 . _:genid4557 . _:genid4557 . "Threshold for H-score PTM site location score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002559"^^ . "H-Score threshold"^^ . _:genid4558 . _:genid4558 . _:genid4558 . _:genid4558 "Threshold for H-score PTM site location score."^^ . _:genid4558 "PSI:PI"^^ . _:genid4559 . _:genid4559 . _:genid4559 . _:genid4559 "value-type:xsd:double"^^ . _:genid4559 "The allowed value-type for this CV term."^^ . . . _:genid4560 . _:genid4560 . _:genid4560 . _:genid4560 . "Threshold for DeBunker PTM site location score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002560"^^ . "DeBunker:score threshold"^^ . _:genid4561 . _:genid4561 . _:genid4561 . _:genid4561 "Threshold for DeBunker PTM site location score."^^ . _:genid4561 "PSI:PI"^^ . _:genid4562 . _:genid4562 . _:genid4562 . _:genid4562 "value-type:xsd:double"^^ . _:genid4562 "The allowed value-type for this CV term."^^ . . . _:genid4563 . _:genid4563 . _:genid4563 . _:genid4563 . "Threshold for Mascot PTM site assignment confidence."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002561"^^ . "Mascot:PTM site assignment confidence threshold"^^ . _:genid4564 . _:genid4564 . _:genid4564 . _:genid4564 "Threshold for Mascot PTM site assignment confidence."^^ . _:genid4564 "PSI:PI"^^ . _:genid4565 . _:genid4565 . _:genid4565 . _:genid4565 "value-type:xsd:double"^^ . _:genid4565 "The allowed value-type for this CV term."^^ . . . _:genid4566 . _:genid4566 . _:genid4566 . _:genid4566 . "Threshold for MSQuant:PTM-score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002562"^^ . "MSQuant:PTM-score threshold"^^ . _:genid4567 . _:genid4567 . _:genid4567 . _:genid4567 "Threshold for MSQuant:PTM-score."^^ . _:genid4567 "PSI:PI"^^ . _:genid4568 . _:genid4568 . _:genid4568 . _:genid4568 "value-type:xsd:double"^^ . _:genid4568 "The allowed value-type for this CV term."^^ . . . _:genid4569 . _:genid4569 . _:genid4569 . _:genid4569 . "Threshold for MaxQuant:PTM Score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002563"^^ . "MaxQuant:PTM Score threshold"^^ . _:genid4570 . _:genid4570 . _:genid4570 . _:genid4570 "Threshold for MaxQuant:PTM Score."^^ . _:genid4570 "PSI:PI"^^ . _:genid4571 . _:genid4571 . _:genid4571 . _:genid4571 "value-type:xsd:double"^^ . _:genid4571 "The allowed value-type for this CV term."^^ . . . _:genid4572 . _:genid4572 . _:genid4572 . _:genid4572 . "Threshold for MaxQuant:P-site localization probability."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002564"^^ . "MaxQuant:P-site localization probability threshold"^^ . _:genid4573 . _:genid4573 . _:genid4573 . _:genid4573 "Threshold for MaxQuant:P-site localization probability."^^ . _:genid4573 "PSI:PI"^^ . _:genid4574 . _:genid4574 . _:genid4574 . _:genid4574 "value-type:xsd:double"^^ . _:genid4574 "The allowed value-type for this CV term."^^ . . . _:genid4575 . _:genid4575 . _:genid4575 . _:genid4575 . "Threshold for MaxQuant:PTM Delta Score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002565"^^ . "MaxQuant:PTM Delta Score threshold"^^ . _:genid4576 . _:genid4576 . _:genid4576 . _:genid4576 "Threshold for MaxQuant:PTM Delta Score."^^ . _:genid4576 "PSI:PI"^^ . _:genid4577 . _:genid4577 . _:genid4577 . _:genid4577 "value-type:xsd:double"^^ . _:genid4577 "The allowed value-type for this CV term."^^ . . . _:genid4578 . _:genid4578 . _:genid4578 . _:genid4578 . "Threshold for MaxQuant:Phospho (STY) Probabilities."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002566"^^ . "MaxQuant:Phospho (STY) Probabilities threshold"^^ . _:genid4579 . _:genid4579 . _:genid4579 . _:genid4579 "Threshold for MaxQuant:Phospho (STY) Probabilities."^^ . _:genid4579 "PSI:PI"^^ . _:genid4580 . _:genid4580 . _:genid4580 . _:genid4580 "value-type:xsd:double"^^ . _:genid4580 "The allowed value-type for this CV term."^^ . . . _:genid4581 . _:genid4581 . _:genid4581 . _:genid4581 . "Threshold for phosphoRS score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002567"^^ . "phosphoRS score threshold"^^ . _:genid4582 . _:genid4582 . _:genid4582 . _:genid4582 "Threshold for phosphoRS score."^^ . _:genid4582 "PSI:PI"^^ . _:genid4583 . _:genid4583 . _:genid4583 . _:genid4583 "value-type:xsd:double"^^ . _:genid4583 "The allowed value-type for this CV term."^^ . . . _:genid4584 . _:genid4584 . _:genid4584 . _:genid4584 . "Threshold for phosphoRS site probability."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002568"^^ . "phosphoRS site probability threshold"^^ . _:genid4585 . _:genid4585 . _:genid4585 . _:genid4585 "Threshold for phosphoRS site probability."^^ . _:genid4585 "PSI:PI"^^ . _:genid4586 . _:genid4586 . _:genid4586 . _:genid4586 "value-type:xsd:double"^^ . _:genid4586 "The allowed value-type for this CV term."^^ . . . _:genid4587 . _:genid4587 . _:genid4587 . _:genid4587 . "Number of spectra processed at once in a ProteomeDiscoverer search."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002569"^^ . "ProteomeDiscoverer:Number of Spectra Processed At Once"^^ . _:genid4588 . _:genid4588 . _:genid4588 . _:genid4588 "Number of spectra processed at once in a ProteomeDiscoverer search."^^ . _:genid4588 "PSI:PI"^^ . _:genid4589 . _:genid4589 . _:genid4589 . _:genid4589 "value-type:xsd:int"^^ . _:genid4589 "The allowed value-type for this CV term."^^ . . . _:genid4590 . _:genid4590 . _:genid4590 . _:genid4590 . "A protein for which the matched peptide sequences are the same, or a subset of, the matched peptide sequences for two or more other proteins combined. These other proteins need not all be in the same group."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002570"^^ . "sequence multiply subsumable protein"^^ . _:genid4591 . _:genid4591 . _:genid4591 . _:genid4591 "A protein for which the matched peptide sequences are the same, or a subset of, the matched peptide sequences for two or more other proteins combined. These other proteins need not all be in the same group."^^ . _:genid4591 "PSI:PI"^^ . _:genid4592 . _:genid4592 . _:genid4592 . _:genid4592 "value-type:xsd:string"^^ . _:genid4592 "The allowed value-type for this CV term."^^ . . . _:genid4593 . _:genid4593 . _:genid4593 . _:genid4593 . "A protein for which the matched spectra are the same, or a subset of, the matched spectra for two or more other proteins combined. These other proteins need not all be in the same group."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002571"^^ . "spectrum multiply subsumable protein"^^ . _:genid4594 . _:genid4594 . _:genid4594 . _:genid4594 "A protein for which the matched spectra are the same, or a subset of, the matched spectra for two or more other proteins combined. These other proteins need not all be in the same group."^^ . _:genid4594 "PSI:PI"^^ . _:genid4595 . _:genid4595 . _:genid4595 . _:genid4595 "value-type:xsd:string"^^ . _:genid4595 "The allowed value-type for this CV term."^^ . . . "Estimated statistical threshold used for protein detection."^^ . "MS"^^ . "MS:1002572"^^ . "protein detection statistical threshold"^^ . _:genid4596 . _:genid4596 . _:genid4596 . _:genid4596 "Estimated statistical threshold used for protein detection."^^ . _:genid4596 "PSI:MS"^^ . . . "Estimated statistical threshold used for spectrum identification."^^ . "MS"^^ . "MS:1002573"^^ . "spectrum identification statistical threshold"^^ . _:genid4597 . _:genid4597 . _:genid4597 . _:genid4597 "Estimated statistical threshold used for spectrum identification."^^ . _:genid4597 "PSI:MS"^^ . . . "A program in the TPP that calculates PSM, peptide, and protein-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc."^^ . "MS"^^ . "MS:1002574"^^ . "ASAPRatio"^^ . _:genid4598 . _:genid4598 . _:genid4598 . _:genid4598 "A program in the TPP that calculates PSM, peptide, and protein-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc."^^ . _:genid4598 "PSI:PI"^^ . . . "Tide open-source sequence search program developed at the University of Washington."^^ . "MS"^^ . "MS:1002575"^^ . "Tide"^^ . _:genid4599 . _:genid4599 . _:genid4599 . _:genid4599 "Tide open-source sequence search program developed at the University of Washington."^^ . _:genid4599 "PMID:21761931"^^ . . . "Andromeda result file output format."^^ . "MS"^^ . "MS:1002576"^^ . "Andromeda result format"^^ . _:genid4600 . _:genid4600 . _:genid4600 . _:genid4600 "Andromeda result file output format."^^ . _:genid4600 "PSI:PI"^^ . . . "SCIEX 2000 QTRAP."^^ . "MS"^^ . "MS:1002577"^^ . "2000 QTRAP"^^ . _:genid4601 . _:genid4601 . _:genid4601 . _:genid4601 "SCIEX 2000 QTRAP."^^ . _:genid4601 "PSI:MS"^^ . . . "SCIEX 2500 QTRAP."^^ . "MS"^^ . "MS:1002578"^^ . "2500 QTRAP"^^ . _:genid4602 . _:genid4602 . _:genid4602 . _:genid4602 "SCIEX 2500 QTRAP."^^ . _:genid4602 "PSI:MS"^^ . . . "SCIEX 3500 QTRAP."^^ . "MS"^^ . "MS:1002579"^^ . "3500 QTRAP"^^ . _:genid4603 . _:genid4603 . _:genid4603 . _:genid4603 "SCIEX 3500 QTRAP."^^ . _:genid4603 "PSI:MS"^^ . . . "SCIEX QTRAP 4500."^^ . "MS"^^ . "MS:1002580"^^ . "QTRAP 4500"^^ . _:genid4604 . _:genid4604 . _:genid4604 . _:genid4604 "SCIEX QTRAP 4500."^^ . _:genid4604 "PSI:MS"^^ . . . "SCIEX QTRAP 6500."^^ . "MS"^^ . "MS:1002581"^^ . "QTRAP 6500"^^ . _:genid4605 . _:genid4605 . _:genid4605 . _:genid4605 "SCIEX QTRAP 6500."^^ . _:genid4605 "PSI:MS"^^ . . . "SCIEX QTRAP 6500+."^^ . "MS"^^ . "MS:1002582"^^ . "QTRAP 6500+"^^ . _:genid4606 . _:genid4606 . _:genid4606 . _:genid4606 "SCIEX QTRAP 6500+."^^ . _:genid4606 "PSI:MS"^^ . . . "SCIEX TripleTOF 4600 time-of-flight mass spectrometer."^^ . "MS"^^ . "MS:1002583"^^ . "TripleTOF 4600"^^ . _:genid4607 . _:genid4607 . _:genid4607 . _:genid4607 "SCIEX TripleTOF 4600 time-of-flight mass spectrometer."^^ . _:genid4607 "PSI:MS"^^ . . . "SCIEX TripleTOF 5600+ time-of-flight mass spectrometer."^^ . "MS"^^ . "MS:1002584"^^ . "TripleTOF 5600+"^^ . _:genid4608 . _:genid4608 . _:genid4608 . _:genid4608 "SCIEX TripleTOF 5600+ time-of-flight mass spectrometer."^^ . _:genid4608 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX API 100 MS."^^ . "MS"^^ . "MS:1002585"^^ . "API 100"^^ . _:genid4609 . _:genid4609 . _:genid4609 . _:genid4609 "Applied Biosystems/MDS SCIEX API 100 MS."^^ . _:genid4609 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX API 100LC MS."^^ . "MS"^^ . "MS:1002586"^^ . "API 100LC"^^ . _:genid4610 . _:genid4610 . _:genid4610 . _:genid4610 "Applied Biosystems/MDS SCIEX API 100LC MS."^^ . _:genid4610 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX API 165 MS."^^ . "MS"^^ . "MS:1002587"^^ . "API 165"^^ . _:genid4611 . _:genid4611 . _:genid4611 . _:genid4611 "Applied Biosystems/MDS SCIEX API 165 MS."^^ . _:genid4611 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX API 300 MS."^^ . "MS"^^ . "MS:1002588"^^ . "API 300"^^ . _:genid4612 . _:genid4612 . _:genid4612 . _:genid4612 "Applied Biosystems/MDS SCIEX API 300 MS."^^ . _:genid4612 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX API 350 MS."^^ . "MS"^^ . "MS:1002589"^^ . "API 350"^^ . _:genid4613 . _:genid4613 . _:genid4613 . _:genid4613 "Applied Biosystems/MDS SCIEX API 350 MS."^^ . _:genid4613 "PSI:MS"^^ . . . "Applied Biosystems/MDS SCIEX API 365 MS."^^ . "MS"^^ . "MS:1002590"^^ . "API 365"^^ . _:genid4614 . _:genid4614 . _:genid4614 . _:genid4614 "Applied Biosystems/MDS SCIEX API 365 MS."^^ . _:genid4614 "PSI:MS"^^ . . . "SCIEX Triple Quad 3500."^^ . "MS"^^ . "MS:1002591"^^ . "Triple Quad 3500"^^ . _:genid4615 . _:genid4615 . _:genid4615 . _:genid4615 "SCIEX Triple Quad 3500."^^ . _:genid4615 "PSI:MS"^^ . . . "SCIEX Triple Quad 4500."^^ . "MS"^^ . "MS:1002592"^^ . "Triple Quad 4500"^^ . _:genid4616 . _:genid4616 . _:genid4616 . _:genid4616 "SCIEX Triple Quad 4500."^^ . _:genid4616 "PSI:MS"^^ . . . "SCIEX Triple Quad 5500."^^ . "MS"^^ . "MS:1002593"^^ . "Triple Quad 5500"^^ . _:genid4617 . _:genid4617 . _:genid4617 . _:genid4617 "SCIEX Triple Quad 5500."^^ . _:genid4617 "PSI:MS"^^ . . . "SCIEX Triple Quad 6500."^^ . "MS"^^ . "MS:1002594"^^ . "Triple Quad 6500"^^ . _:genid4618 . _:genid4618 . _:genid4618 . _:genid4618 "SCIEX Triple Quad 6500."^^ . _:genid4618 "PSI:MS"^^ . . . "SCIEX Triple Quad 6500+."^^ . "MS"^^ . "MS:1002595"^^ . "Triple Quad 6500+"^^ . _:genid4619 . _:genid4619 . _:genid4619 . _:genid4619 "SCIEX Triple Quad 6500+."^^ . _:genid4619 "PSI:MS"^^ . . . "The SEQUEST-like sequence search engine ProLuCID, developed in the Yates Lab at the Scripps Research Institute."^^ . "MS"^^ . "MS:1002596"^^ . "ProLuCID"^^ . _:genid4620 . _:genid4620 . _:genid4620 . _:genid4620 "The SEQUEST-like sequence search engine ProLuCID, developed in the Yates Lab at the Scripps Research Institute."^^ . _:genid4620 "PMID:26171723"^^ . . . "MS1 file format for MS1 spectral data."^^ . "MS"^^ . "MS:1002597"^^ . "MS1 format"^^ . _:genid4621 . _:genid4621 . _:genid4621 . _:genid4621 "MS1 file format for MS1 spectral data."^^ . _:genid4621 "DOI:10.1002/rcm.1603"^^ . _:genid4621 "PMID:15317041"^^ . . . "Analysis software designed to reassemble the SEQUEST peptide identifications and to highlight the most significant matches."^^ . "MS"^^ . "MS:1002598"^^ . "DTASelect"^^ . _:genid4622 . _:genid4622 . _:genid4622 . _:genid4622 "Analysis software designed to reassemble the SEQUEST peptide identifications and to highlight the most significant matches."^^ . _:genid4622 "PMID:12643522"^^ . _:genid4622 "http://fields.scripps.edu/DTASelect/"^^ . . . _:genid4623 . _:genid4623 . _:genid4623 . _:genid4623 . "Spectral Hash key, an unique identifier for spectra."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002599"^^ . "splash key"^^ . _:genid4624 . _:genid4624 . _:genid4624 . _:genid4624 "Spectral Hash key, an unique identifier for spectra."^^ . _:genid4624 "PMID:27824832"^^ . _:genid4625 . _:genid4625 . _:genid4625 . _:genid4625 "value-type:xsd:string"^^ . _:genid4625 "The allowed value-type for this CV term."^^ . . . . "Internal data and submission format of the PRIDE database."^^ . "MS"^^ . "MS:1002600"^^ . "PRIDE XML"^^ . _:genid4626 . _:genid4626 . _:genid4626 . _:genid4626 "Internal data and submission format of the PRIDE database."^^ . _:genid4626 "http://ftp.pride.ebi.ac.uk/pride/resources/schema/pride/pride.xsd"^^ . . . "Tabular result format for proteomics and metabolomics experiments."^^ . "MS"^^ . "MS:1002601"^^ . "mzTab"^^ . _:genid4627 . _:genid4627 . _:genid4627 . _:genid4627 "Tabular result format for proteomics and metabolomics experiments."^^ . _:genid4627 "PMID:24980485"^^ . _:genid4627 "http://www.psidev.info/mztab/"^^ . . . . "Reagent used in labeled quantification methods."^^ . "MS"^^ . "MS:1002602"^^ . "sample label"^^ . _:genid4628 . _:genid4628 . _:genid4628 . _:genid4628 "Reagent used in labeled quantification methods."^^ . _:genid4628 "PSI:PI"^^ . . . "Isotope coded affinity tag reagent."^^ . "MS"^^ . "MS:1002603"^^ . "ICAT reagent"^^ . _:genid4629 . _:genid4629 . _:genid4629 . _:genid4629 "Isotope coded affinity tag reagent."^^ . _:genid4629 "PSI:PI"^^ . . . "The name of the sample labelled with the heavy ICAT label."^^ . "MS"^^ . "MS:1002604"^^ . "ICAT heavy reagent"^^ . _:genid4630 . _:genid4630 . _:genid4630 . _:genid4630 "The name of the sample labelled with the heavy ICAT label."^^ . _:genid4630 "PSI:PI"^^ . . . "The name of the sample labelled with the light ICAT label."^^ . "MS"^^ . "MS:1002605"^^ . "ICAT light reagent"^^ . _:genid4631 . _:genid4631 . _:genid4631 . _:genid4631 "The name of the sample labelled with the light ICAT label."^^ . _:genid4631 "PSI:PI"^^ . . . "Isotope coded protein labeling reagent."^^ . "MS"^^ . "MS:1002606"^^ . "ICPL reagent"^^ . _:genid4632 . _:genid4632 . _:genid4632 . _:genid4632 "Isotope coded protein labeling reagent."^^ . _:genid4632 "PSI:PI"^^ . . . "The name of the sample labelled with the ICPL reagent 0."^^ . "MS"^^ . "MS:1002607"^^ . "ICPL reagent 0"^^ . _:genid4633 . _:genid4633 . _:genid4633 . _:genid4633 "The name of the sample labelled with the ICPL reagent 0."^^ . _:genid4633 "PSI:PI"^^ . . . "The name of the sample labelled with the ICPL reagent 4."^^ . "MS"^^ . "MS:1002608"^^ . "ICPL reagent 4"^^ . _:genid4634 . _:genid4634 . _:genid4634 . _:genid4634 "The name of the sample labelled with the ICPL reagent 4."^^ . _:genid4634 "PSI:PI"^^ . . . "The name of the sample labelled with the ICPL reagent 6."^^ . "MS"^^ . "MS:1002609"^^ . "ICPL reagent 6"^^ . _:genid4635 . _:genid4635 . _:genid4635 . _:genid4635 "The name of the sample labelled with the ICPL reagent 6."^^ . _:genid4635 "PSI:PI"^^ . . . "The name of the sample labelled with the ICPL reagent 10."^^ . "MS"^^ . "MS:1002610"^^ . "ICPL reagent 10"^^ . _:genid4636 . _:genid4636 . _:genid4636 . _:genid4636 "The name of the sample labelled with the ICPL reagent 10."^^ . _:genid4636 "PSI:PI"^^ . . . "Stable isotope labeling with amino acids in cell culture reagent."^^ . "MS"^^ . "MS:1002611"^^ . "SILAC reagent"^^ . _:genid4637 . _:genid4637 . _:genid4637 . _:genid4637 "Stable isotope labeling with amino acids in cell culture reagent."^^ . _:genid4637 "PSI:PI"^^ . . . "The name of the sample labelled with the heavy SILAC label."^^ . "MS"^^ . "MS:1002612"^^ . "SILAC heavy reagent"^^ . _:genid4638 . _:genid4638 . _:genid4638 . _:genid4638 "The name of the sample labelled with the heavy SILAC label."^^ . _:genid4638 "PSI:PI"^^ . . . "The name of the sample labelled with the medium SILAC label."^^ . "MS"^^ . "MS:1002613"^^ . "SILAC medium reagent"^^ . _:genid4639 . _:genid4639 . _:genid4639 . _:genid4639 "The name of the sample labelled with the medium SILAC label."^^ . _:genid4639 "PSI:PI"^^ . . . "The name of the sample labelled with the light SILAC label."^^ . "MS"^^ . "MS:1002614"^^ . "SILAC light reagent"^^ . _:genid4640 . _:genid4640 . _:genid4640 . _:genid4640 "The name of the sample labelled with the light SILAC label."^^ . _:genid4640 "PSI:PI"^^ . . . "Tandem mass tag reagent used in TMT, glycoTMT, iodoTMT, aminoxyTMT or hydrazideTMT isobaric labeling."^^ . "MS"^^ . "MS:1002615"^^ . "TMT reagent"^^ . _:genid4641 . _:genid4641 . _:genid4641 . _:genid4641 "Tandem mass tag reagent used in TMT, glycoTMT, iodoTMT, aminoxyTMT or hydrazideTMT isobaric labeling."^^ . _:genid4641 "PSI:PI"^^ . . . "The name of the sample labelled with the TMT reagent 126."^^ . "MS"^^ . "MS:1002616"^^ . "TMT reagent 126"^^ . _:genid4642 . _:genid4642 . _:genid4642 . _:genid4642 "The name of the sample labelled with the TMT reagent 126."^^ . _:genid4642 "PSI:PI"^^ . . . "The name of the sample labelled with the TMT reagent 127."^^ . "MS"^^ . "MS:1002617"^^ . "TMT reagent 127"^^ . _:genid4643 . _:genid4643 . _:genid4643 . _:genid4643 "The name of the sample labelled with the TMT reagent 127."^^ . _:genid4643 "PSI:PI"^^ . . . "The name of the sample labelled with the TMT reagent 128."^^ . "MS"^^ . "MS:1002618"^^ . "TMT reagent 128"^^ . _:genid4644 . _:genid4644 . _:genid4644 . _:genid4644 "The name of the sample labelled with the TMT reagent 128."^^ . _:genid4644 "PSI:PI"^^ . . . "The name of the sample labelled with the TMT reagent 129."^^ . "MS"^^ . "MS:1002619"^^ . "TMT reagent 129"^^ . _:genid4645 . _:genid4645 . _:genid4645 . _:genid4645 "The name of the sample labelled with the TMT reagent 129."^^ . _:genid4645 "PSI:PI"^^ . . . "The name of the sample labelled with the TMT reagent 130."^^ . "MS"^^ . "MS:1002620"^^ . "TMT reagent 130"^^ . _:genid4646 . _:genid4646 . _:genid4646 . _:genid4646 "The name of the sample labelled with the TMT reagent 130."^^ . _:genid4646 "PSI:PI"^^ . . . "The name of the sample labelled with the TMT reagent 131."^^ . "MS"^^ . "MS:1002621"^^ . "TMT reagent 131"^^ . _:genid4647 . _:genid4647 . _:genid4647 . _:genid4647 "The name of the sample labelled with the TMT reagent 131."^^ . _:genid4647 "PSI:PI"^^ . . . "Isobaric tag for relative and absolute quantitation (iTRAQ or iTRAQH) reagent."^^ . "MS"^^ . "MS:1002622"^^ . "iTRAQ reagent"^^ . _:genid4648 . _:genid4648 . _:genid4648 . _:genid4648 "Isobaric tag for relative and absolute quantitation (iTRAQ or iTRAQH) reagent."^^ . _:genid4648 "PSI:PI"^^ . . . "The name of the sample labelled with the iTRAQ reagent 113."^^ . "MS"^^ . "MS:1002623"^^ . "iTRAQ reagent 113"^^ . _:genid4649 . _:genid4649 . _:genid4649 . _:genid4649 "The name of the sample labelled with the iTRAQ reagent 113."^^ . _:genid4649 "PSI:PI"^^ . . . "The name of the sample labelled with the iTRAQ reagent 114."^^ . "MS"^^ . "MS:1002624"^^ . "iTRAQ reagent 114"^^ . _:genid4650 . _:genid4650 . _:genid4650 . _:genid4650 "The name of the sample labelled with the iTRAQ reagent 114."^^ . _:genid4650 "PSI:PI"^^ . . . "The name of the sample labelled with the iTRAQ reagent 115."^^ . "MS"^^ . "MS:1002625"^^ . "iTRAQ reagent 115"^^ . _:genid4651 . _:genid4651 . _:genid4651 . _:genid4651 "The name of the sample labelled with the iTRAQ reagent 115."^^ . _:genid4651 "PSI:PI"^^ . . . "The name of the sample labelled with the iTRAQ reagent 116."^^ . "MS"^^ . "MS:1002626"^^ . "iTRAQ reagent 116"^^ . _:genid4652 . _:genid4652 . _:genid4652 . _:genid4652 "The name of the sample labelled with the iTRAQ reagent 116."^^ . _:genid4652 "PSI:PI"^^ . . . "The name of the sample labelled with the iTRAQ reagent 117."^^ . "MS"^^ . "MS:1002627"^^ . "iTRAQ reagent 117"^^ . _:genid4653 . _:genid4653 . _:genid4653 . _:genid4653 "The name of the sample labelled with the iTRAQ reagent 117."^^ . _:genid4653 "PSI:PI"^^ . . . "The name of the sample labelled with the iTRAQ reagent 118."^^ . "MS"^^ . "MS:1002628"^^ . "iTRAQ reagent 118"^^ . _:genid4654 . _:genid4654 . _:genid4654 . _:genid4654 "The name of the sample labelled with the iTRAQ reagent 118."^^ . _:genid4654 "PSI:PI"^^ . . . "The name of the sample labelled with the iTRAQ reagent 119."^^ . "MS"^^ . "MS:1002629"^^ . "iTRAQ reagent 119"^^ . _:genid4655 . _:genid4655 . _:genid4655 . _:genid4655 "The name of the sample labelled with the iTRAQ reagent 119."^^ . _:genid4655 "PSI:PI"^^ . . . "The name of the sample labelled with the iTRAQ reagent 121."^^ . "MS"^^ . "MS:1002630"^^ . "iTRAQ reagent 121"^^ . _:genid4656 . _:genid4656 . _:genid4656 . _:genid4656 "The name of the sample labelled with the iTRAQ reagent 121."^^ . _:genid4656 "PSI:PI"^^ . . . "Dissociation process combining electron-transfer dissociation and higher-energy collision dissociation. It combines ETD (reaction time) followed by HCD (activation energy)."^^ . "EThcD"^^ . "MS"^^ . "MS:1002631"^^ . "electron-transfer/higher-energy collision dissociation"^^ . _:genid4657 . _:genid4657 . _:genid4657 . _:genid4657 "Dissociation process combining electron-transfer dissociation and higher-energy collision dissociation. It combines ETD (reaction time) followed by HCD (activation energy)."^^ . _:genid4657 "PSI:PI"^^ . . . _:genid4658 . _:genid4658 . _:genid4658 . _:genid4658 . "Dataset identifier issued by the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002632"^^ . "jPOST dataset identifier"^^ . _:genid4659 . _:genid4659 . _:genid4659 . _:genid4659 "Dataset identifier issued by the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . _:genid4659 "PSI:PI"^^ . _:genid4660 . _:genid4660 . _:genid4660 . _:genid4660 "value-type:xsd:string"^^ . _:genid4660 "The allowed value-type for this CV term."^^ . . . _:genid4661 . _:genid4661 . _:genid4661 . _:genid4661 . "URI that allows the access to one dataset in the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . "value-type:xsd:anyURI"^^ . "MS"^^ . "MS:1002633"^^ . "jPOST dataset URI"^^ . _:genid4662 . _:genid4662 . _:genid4662 . _:genid4662 "URI that allows the access to one dataset in the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . _:genid4662 "PSI:PI"^^ . _:genid4663 . _:genid4663 . _:genid4663 . _:genid4663 "value-type:xsd:anyURI"^^ . _:genid4663 "The allowed value-type for this CV term."^^ . . . "Thermo Scientific Q Exactive Plus."^^ . "MS"^^ . "MS:1002634"^^ . "Q Exactive Plus"^^ . _:genid4664 . _:genid4664 . _:genid4664 . _:genid4664 "Thermo Scientific Q Exactive Plus."^^ . _:genid4664 "PSI:PI"^^ . . . "Proteogenomics search performed."^^ . "MS"^^ . "MS:1002635"^^ . "proteogenomics search"^^ . _:genid4665 . _:genid4665 . _:genid4665 . _:genid4665 "Proteogenomics search performed."^^ . _:genid4665 "PSI:PI"^^ . . . "Proteogenomics attribute."^^ . "MS"^^ . "MS:1002636"^^ . "proteogenomics attribute"^^ . _:genid4666 . _:genid4666 . _:genid4666 . _:genid4666 "Proteogenomics attribute."^^ . _:genid4666 "PSI:PI"^^ . . . _:genid4667 . _:genid4667 . _:genid4667 . _:genid4667 . "The name or number of the chromosome to which a given peptide has been mapped."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002637"^^ . "chromosome name"^^ . _:genid4668 . _:genid4668 . _:genid4668 . _:genid4668 "The name or number of the chromosome to which a given peptide has been mapped."^^ . _:genid4668 "PSI:PI"^^ . _:genid4669 . _:genid4669 . _:genid4669 . _:genid4669 "value-type:xsd:string"^^ . _:genid4669 "The allowed value-type for this CV term."^^ . . . _:genid4670 . _:genid4670 . _:genid4670 . _:genid4670 . "The strand (+ or -) to which the peptide has been mapped."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002638"^^ . "chromosome strand"^^ . _:genid4671 . _:genid4671 . _:genid4671 . _:genid4671 "The strand (+ or -) to which the peptide has been mapped."^^ . _:genid4671 "PSI:PI"^^ . _:genid4672 . _:genid4672 . _:genid4672 . _:genid4672 "value-type:xsd:string"^^ . _:genid4672 "The allowed value-type for this CV term."^^ . . . _:genid4673 . _:genid4673 . _:genid4673 . _:genid4673 . "OBSOLETE The overall start position on the chromosome to which a peptide has been mapped i.e. the position of the first base of the first codon, using a zero-based counting system."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002639"^^ . "This term was obsoleted because it contains redundant info contained in term MS:1002643 - peptide start positions on chromosome."^^ . "peptide start on chromosome"^^ . "true"^^ . _:genid4674 . _:genid4674 . _:genid4674 . _:genid4674 "OBSOLETE The overall start position on the chromosome to which a peptide has been mapped i.e. the position of the first base of the first codon, using a zero-based counting system."^^ . _:genid4674 "PSI:PI"^^ . _:genid4675 . _:genid4675 . _:genid4675 . _:genid4675 "value-type:xsd:int"^^ . _:genid4675 "The allowed value-type for this CV term."^^ . . . _:genid4676 . _:genid4676 . _:genid4676 . _:genid4676 . "The overall end position on the chromosome to which a peptide has been mapped i.e. the position of the third base of the last codon, using a zero-based counting system."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002640"^^ . "peptide end on chromosome"^^ . _:genid4677 . _:genid4677 . _:genid4677 . _:genid4677 "The overall end position on the chromosome to which a peptide has been mapped i.e. the position of the third base of the last codon, using a zero-based counting system."^^ . _:genid4677 "PSI:PI"^^ . _:genid4678 . _:genid4678 . _:genid4678 . _:genid4678 "value-type:xsd:int"^^ . _:genid4678 "The allowed value-type for this CV term."^^ . . . _:genid4679 . _:genid4679 . _:genid4679 . _:genid4679 . "The number of exons to which the peptide has been mapped."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002641"^^ . "peptide exon count"^^ . _:genid4680 . _:genid4680 . _:genid4680 . _:genid4680 "The number of exons to which the peptide has been mapped."^^ . _:genid4680 "PSI:PI"^^ . _:genid4681 . _:genid4681 . _:genid4681 . _:genid4681 "value-type:xsd:int"^^ . _:genid4681 "The allowed value-type for this CV term."^^ . . . _:genid4682 . _:genid4682 . _:genid4682 . _:genid4682 . "A comma separated list of the number of DNA bases within each exon to which a peptide has been mapped. Assuming standard operation of a search engine, the peptide exon sizes should sum to exactly three times the peptide length."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002642"^^ . "peptide exon nucleotide sizes"^^ . _:genid4683 . _:genid4683 . _:genid4683 . _:genid4683 "A comma separated list of the number of DNA bases within each exon to which a peptide has been mapped. Assuming standard operation of a search engine, the peptide exon sizes should sum to exactly three times the peptide length."^^ . _:genid4683 "PSI:PI"^^ . _:genid4684 . _:genid4684 . _:genid4684 . _:genid4684 "value-type:xsd:string"^^ . _:genid4684 "The allowed value-type for this CV term."^^ . . . _:genid4685 . _:genid4685 . _:genid4685 . _:genid4685 . "A comma separated list of start positions within exons to which the peptide has been mapped, relative to peptide-chromosome start, assuming a zero-based counting system. The first value MUST match the value in peptide start on chromosome."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002643"^^ . "peptide start positions on chromosome"^^ . _:genid4686 . _:genid4686 . _:genid4686 . _:genid4686 "A comma separated list of start positions within exons to which the peptide has been mapped, relative to peptide-chromosome start, assuming a zero-based counting system. The first value MUST match the value in peptide start on chromosome."^^ . _:genid4686 "PSI:PI"^^ . _:genid4687 . _:genid4687 . _:genid4687 . _:genid4687 "value-type:xsd:string"^^ . _:genid4687 "The allowed value-type for this CV term."^^ . . . _:genid4688 . _:genid4688 . _:genid4688 . _:genid4688 . "The reference genome and versioning string as used for mapping. All coordinates are within this frame of reference."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002644"^^ . "genome reference version"^^ . _:genid4689 . _:genid4689 . _:genid4689 . _:genid4689 "The reference genome and versioning string as used for mapping. All coordinates are within this frame of reference."^^ . _:genid4689 "PSI:PI"^^ . _:genid4690 . _:genid4690 . _:genid4690 . _:genid4690 "value-type:xsd:string"^^ . _:genid4690 "The allowed value-type for this CV term."^^ . . . . "Mass Spectrometry Development Kit (MSDK) is a Java library of algorithms for processing of mass spectrometry data."^^ . "MS"^^ . "MS:1002645"^^ . "MSDK"^^ . _:genid4691 . _:genid4691 . _:genid4691 . _:genid4691 "Mass Spectrometry Development Kit (MSDK) is a Java library of algorithms for processing of mass spectrometry data."^^ . _:genid4691 "PSI:PI"^^ . _:genid4691 "http://msdk.github.io/"^^ . . _:genid4692 . _:genid4692 . _:genid4692 . _:genid4692 . "Describes how the native spectrum identifiers that have been combined prior to searching or interpretation are formated."^^ . "nativeID format, combined spectra"^^ . "MS"^^ . "MS:1002646"^^ . "native spectrum identifier format, combined spectra"^^ . _:genid4693 . _:genid4693 . _:genid4693 . _:genid4693 "Describes how the native spectrum identifiers that have been combined prior to searching or interpretation are formated."^^ . _:genid4693 "PSI:PI"^^ . . . _:genid4694 . _:genid4694 . _:genid4694 . _:genid4694 . "Thermo comma separated list of spectra that have been combined prior to searching or interpretation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002647"^^ . "Thermo nativeID format, combined spectra"^^ . _:genid4695 . _:genid4695 . _:genid4695 . _:genid4695 "Thermo comma separated list of spectra that have been combined prior to searching or interpretation."^^ . _:genid4695 "PSI:PI"^^ . _:genid4696 . _:genid4696 . _:genid4696 . _:genid4696 "value-type:xsd:string"^^ . _:genid4696 "The allowed value-type for this CV term."^^ . . . _:genid4697 . _:genid4697 . _:genid4697 . _:genid4697 . "Waters comma separated list of spectra that have been combined prior to searching or interpretation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002648"^^ . "Waters nativeID format, combined spectra"^^ . _:genid4698 . _:genid4698 . _:genid4698 . _:genid4698 "Waters comma separated list of spectra that have been combined prior to searching or interpretation."^^ . _:genid4698 "PSI:PI"^^ . _:genid4699 . _:genid4699 . _:genid4699 . _:genid4699 "value-type:xsd:string"^^ . _:genid4699 "The allowed value-type for this CV term."^^ . . . _:genid4700 . _:genid4700 . _:genid4700 . _:genid4700 . "WIFF comma separated list of spectra that have been combined prior to searching or interpretation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002649"^^ . "WIFF nativeID format, combined spectra"^^ . _:genid4701 . _:genid4701 . _:genid4701 . _:genid4701 "WIFF comma separated list of spectra that have been combined prior to searching or interpretation."^^ . _:genid4701 "PSI:PI"^^ . _:genid4702 . _:genid4702 . _:genid4702 . _:genid4702 "value-type:xsd:string"^^ . _:genid4702 "The allowed value-type for this CV term."^^ . . . _:genid4703 . _:genid4703 . _:genid4703 . _:genid4703 . "Bruker/Agilent comma separated list of spectra that have been combined prior to searching or interpretation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002650"^^ . "Bruker/Agilent YEP nativeID format, combined spectra"^^ . _:genid4704 . _:genid4704 . _:genid4704 . _:genid4704 "Bruker/Agilent comma separated list of spectra that have been combined prior to searching or interpretation."^^ . _:genid4704 "PSI:PI"^^ . _:genid4705 . _:genid4705 . _:genid4705 . _:genid4705 "value-type:xsd:string"^^ . _:genid4705 "The allowed value-type for this CV term."^^ . . . _:genid4706 . _:genid4706 . _:genid4706 . _:genid4706 . "Bruker BAF comma separated list of spectra that have been combined prior to searching or interpretation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002651"^^ . "Bruker BAF nativeID format, combined spectra"^^ . _:genid4707 . _:genid4707 . _:genid4707 . _:genid4707 "Bruker BAF comma separated list of spectra that have been combined prior to searching or interpretation."^^ . _:genid4707 "PSI:PI"^^ . _:genid4708 . _:genid4708 . _:genid4708 . _:genid4708 "value-type:xsd:string"^^ . _:genid4708 "The allowed value-type for this CV term."^^ . . . _:genid4709 . _:genid4709 . _:genid4709 . _:genid4709 . "Bruker FID comma separated list of spectra that have been combined prior to searching or interpretation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002652"^^ . "The nativeID must be the same as the source file ID."^^ . "Bruker FID nativeID format, combined spectra"^^ . _:genid4710 . _:genid4710 . _:genid4710 . _:genid4710 "Bruker FID comma separated list of spectra that have been combined prior to searching or interpretation."^^ . _:genid4710 "PSI:PI"^^ . _:genid4711 . _:genid4711 . _:genid4711 . _:genid4711 "value-type:xsd:string"^^ . _:genid4711 "The allowed value-type for this CV term."^^ . . . _:genid4712 . _:genid4712 . _:genid4712 . _:genid4712 . "Comma separated list of spectra that have been combined prior to searching or interpretation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002653"^^ . "Used for conversion of peak list files with multiple spectra, i.e. MGF, PKL, merged DTA files. Index is the spectrum number in the file, starting from 0."^^ . "multiple peak list nativeID format, combined spectra"^^ . _:genid4713 . _:genid4713 . _:genid4713 . _:genid4713 "Comma separated list of spectra that have been combined prior to searching or interpretation."^^ . _:genid4713 "PSI:PI"^^ . _:genid4714 . _:genid4714 . _:genid4714 . _:genid4714 "value-type:xsd:string"^^ . _:genid4714 "The allowed value-type for this CV term."^^ . . . _:genid4715 . _:genid4715 . _:genid4715 . _:genid4715 . "Comma separated list of spectra that have been combined prior to searching or interpretation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002654"^^ . "The nativeID must be the same as the source file ID. Used for conversion of peak list files with one spectrum per file, typically folder of PKL or DTAs, each sourceFileRef is different."^^ . "single peak list nativeID format, combined spectra"^^ . _:genid4716 . _:genid4716 . _:genid4716 . _:genid4716 "Comma separated list of spectra that have been combined prior to searching or interpretation."^^ . _:genid4716 "PSI:PI"^^ . _:genid4717 . _:genid4717 . _:genid4717 . _:genid4717 "value-type:xsd:string"^^ . _:genid4717 "The allowed value-type for this CV term."^^ . . . _:genid4718 . _:genid4718 . _:genid4718 . _:genid4718 . "Comma separated list of spectra that have been combined prior to searching or interpretation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002655"^^ . "Used for conversion from mzXML, or DTA folder where native scan numbers can be derived."^^ . "scan number only nativeID format, combined spectra"^^ . _:genid4719 . _:genid4719 . _:genid4719 . _:genid4719 "Comma separated list of spectra that have been combined prior to searching or interpretation."^^ . _:genid4719 "PSI:PI"^^ . _:genid4720 . _:genid4720 . _:genid4720 . _:genid4720 "value-type:xsd:string"^^ . _:genid4720 "The allowed value-type for this CV term."^^ . . . _:genid4721 . _:genid4721 . _:genid4721 . _:genid4721 . "Comma separated list of spectra that have been combined prior to searching or interpretation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002656"^^ . "Used for conversion from mzData. The spectrum id attribute is referenced."^^ . "spectrum identifier nativeID format, combined spectra"^^ . _:genid4722 . _:genid4722 . _:genid4722 . _:genid4722 "Comma separated list of spectra that have been combined prior to searching or interpretation."^^ . _:genid4722 "PSI:PI"^^ . _:genid4723 . _:genid4723 . _:genid4723 . _:genid4723 "value-type:xsd:string"^^ . _:genid4723 "The allowed value-type for this CV term."^^ . . . _:genid4724 . _:genid4724 . _:genid4724 . _:genid4724 . "Comma separated list of spectra that have been combined prior to searching or interpretation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002657"^^ . "A unique identifier of a spectrum stored in an mzML file."^^ . "mzML unique identifier, combined spectra"^^ . _:genid4725 . _:genid4725 . _:genid4725 . _:genid4725 "Comma separated list of spectra that have been combined prior to searching or interpretation."^^ . _:genid4725 "PSI:PI"^^ . _:genid4726 . _:genid4726 . _:genid4726 . _:genid4726 "value-type:xsd:string"^^ . _:genid4726 "The allowed value-type for this CV term."^^ . . _:genid4727 . _:genid4727 . _:genid4727 . _:genid4727 . "Identification parameter for the search engine run."^^ . "MS"^^ . "MS:1002658"^^ . "identification parameter"^^ . _:genid4728 . _:genid4728 . _:genid4728 . _:genid4728 "Identification parameter for the search engine run."^^ . _:genid4728 "PSI:PI"^^ . . . "Text-based format used by UniProtKB for sequence entries."^^ . "SWO:http://edamontology.org/format_2187"^^ . "MS"^^ . "MS:1002659"^^ . "UniProtKB text sequence format"^^ . _:genid4729 . _:genid4729 . _:genid4729 . _:genid4729 "Text-based format used by UniProtKB for sequence entries."^^ . _:genid4729 "PSI:PI"^^ . . . "XML-based format used by UniProtKB for sequence entries."^^ . "MS"^^ . "MS:1002660"^^ . "UniProtKB XML sequence format"^^ . _:genid4730 . _:genid4730 . _:genid4730 . _:genid4730 "XML-based format used by UniProtKB for sequence entries."^^ . _:genid4730 "PSI:PI"^^ . . . "Morpheus search engine."^^ . "MS"^^ . "MS:1002661"^^ . "Morpheus"^^ . _:genid4731 . _:genid4731 . _:genid4731 . _:genid4731 "Morpheus search engine."^^ . _:genid4731 "PMID:23323968"^^ . . . _:genid4732 . _:genid4732 . _:genid4732 . _:genid4732 . _:genid4733 . _:genid4733 . _:genid4733 . _:genid4733 . "Morpheus score for PSMs."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002662"^^ . "Morpheus:Morpheus score"^^ . _:genid4734 . _:genid4734 . _:genid4734 . _:genid4734 "Morpheus score for PSMs."^^ . _:genid4734 "PSI:PI"^^ . _:genid4735 . _:genid4735 . _:genid4735 . _:genid4735 "value-type:xsd:double"^^ . _:genid4735 "The allowed value-type for this CV term."^^ . . . _:genid4736 . _:genid4736 . _:genid4736 . _:genid4736 . _:genid4737 . _:genid4737 . _:genid4737 . _:genid4737 . "Summed Morpheus score for protein groups."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002663"^^ . "Morpheus:summed Morpheus score"^^ . _:genid4738 . _:genid4738 . _:genid4738 . _:genid4738 "Summed Morpheus score for protein groups."^^ . _:genid4738 "PSI:PI"^^ . _:genid4739 . _:genid4739 . _:genid4739 . _:genid4739 "value-type:xsd:double"^^ . _:genid4739 "The allowed value-type for this CV term."^^ . . . _:genid4740 . _:genid4740 . _:genid4740 . _:genid4740 . _:genid4741 . _:genid4741 . _:genid4741 . _:genid4741 . "Parent term for interaction scores derived from cross-linking."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002664"^^ . "interaction score derived from cross-linking"^^ . _:genid4742 . _:genid4742 . _:genid4742 . _:genid4742 "Parent term for interaction scores derived from cross-linking."^^ . _:genid4742 "PSI:PI"^^ . _:genid4743 . _:genid4743 . _:genid4743 . _:genid4743 "value-type:xsd:string"^^ . _:genid4743 "The allowed value-type for this CV term."^^ . . . "([:digit:]+[.][a|b]:([:digit:]+|null):[:digit:]+[.][:digit:]+([Ee][+-][0-9]+)*:(true|false]{1}))."^^ . "MS"^^ . "MS:1002665"^^ . "regular expression for interaction scores derived from cross-linking"^^ . _:genid4744 . _:genid4744 . _:genid4744 . _:genid4744 "([:digit:]+[.][a|b]:([:digit:]+|null):[:digit:]+[.][:digit:]+([Ee][+-][0-9]+)*:(true|false]{1}))."^^ . _:genid4744 "PSI:PI"^^ . . . "Bruker Daltonics' impact II."^^ . "MS"^^ . "MS:1002666"^^ . "impact II"^^ . _:genid4745 . _:genid4745 . _:genid4745 . _:genid4745 "Bruker Daltonics' impact II."^^ . _:genid4745 "PSI:MS"^^ . . . "Bruker Daltonics' impact HD."^^ . "MS"^^ . "MS:1002667"^^ . "impact HD"^^ . _:genid4746 . _:genid4746 . _:genid4746 . _:genid4746 "Bruker Daltonics' impact HD."^^ . _:genid4746 "PSI:MS"^^ . . . _:genid4747 . _:genid4747 . _:genid4747 . _:genid4747 . "Standard reporter ion for iTRAQ 4Plex. The value slot holds the integer mass of the iTRAQ 4Plex reporter ion, e.g. 114."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002668"^^ . "frag: iTRAQ 4plex reporter ion"^^ . _:genid4748 . _:genid4748 . _:genid4748 . _:genid4748 "Standard reporter ion for iTRAQ 4Plex. The value slot holds the integer mass of the iTRAQ 4Plex reporter ion, e.g. 114."^^ . _:genid4748 "PSI:PI"^^ . _:genid4749 . _:genid4749 . _:genid4749 . _:genid4749 "value-type:xsd:int"^^ . _:genid4749 "The allowed value-type for this CV term."^^ . . . _:genid4750 . _:genid4750 . _:genid4750 . _:genid4750 . "Standard reporter ion for iTRAQ 8Plex. The value slot holds the integer mass of the iTRAQ 8Plex reporter ion, e.g. 113."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002669"^^ . "frag: iTRAQ 8plex reporter ion"^^ . _:genid4751 . _:genid4751 . _:genid4751 . _:genid4751 "Standard reporter ion for iTRAQ 8Plex. The value slot holds the integer mass of the iTRAQ 8Plex reporter ion, e.g. 113."^^ . _:genid4751 "PSI:PI"^^ . _:genid4752 . _:genid4752 . _:genid4752 . _:genid4752 "value-type:xsd:int"^^ . _:genid4752 "The allowed value-type for this CV term."^^ . . . _:genid4753 . _:genid4753 . _:genid4753 . _:genid4753 . "Standard reporter ion for TMT. The value slot holds the integer mass of the TMT reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127N."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002670"^^ . "frag: TMT reporter ion"^^ . _:genid4754 . _:genid4754 . _:genid4754 . _:genid4754 "Standard reporter ion for TMT. The value slot holds the integer mass of the TMT reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127N."^^ . _:genid4754 "PSI:PI"^^ . _:genid4755 . _:genid4755 . _:genid4755 . _:genid4755 "value-type:xsd:string"^^ . _:genid4755 "The allowed value-type for this CV term."^^ . . . _:genid4756 . _:genid4756 . _:genid4756 . _:genid4756 . "Standard reporter ion for TMT with ETD fragmentation. The value slot holds the integer mass of the TMT ETD reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127C."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002671"^^ . "frag: TMT ETD reporter ion"^^ . _:genid4757 . _:genid4757 . _:genid4757 . _:genid4757 "Standard reporter ion for TMT with ETD fragmentation. The value slot holds the integer mass of the TMT ETD reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127C."^^ . _:genid4757 "PSI:PI"^^ . _:genid4758 . _:genid4758 . _:genid4758 . _:genid4758 "value-type:xsd:string"^^ . _:genid4758 "The allowed value-type for this CV term."^^ . . . "No statistical threshold for accepting or rejecting that a modification position."^^ . "MS"^^ . "MS:1002672"^^ . "no modification threshold"^^ . _:genid4759 . _:genid4759 . _:genid4759 . _:genid4759 "No statistical threshold for accepting or rejecting that a modification position."^^ . _:genid4759 "PSI:PI"^^ . . . "Cross-Linking MS search engine."^^ . "MS"^^ . "MS:1002673"^^ . "OpenXQuest"^^ . _:genid4760 . _:genid4760 . _:genid4760 . _:genid4760 "Cross-Linking MS search engine."^^ . _:genid4760 "PSI:PI"^^ . . . "SCIEX X500R QTOF, a quadrupole - quadrupole - time-of-flight mass spectrometer."^^ . "MS"^^ . "MS:1002674"^^ . "X500R QTOF"^^ . _:genid4761 . _:genid4761 . _:genid4761 . _:genid4761 "SCIEX X500R QTOF, a quadrupole - quadrupole - time-of-flight mass spectrometer."^^ . _:genid4761 "PSI:MS"^^ . . _:genid4762 . _:genid4762 . _:genid4762 . _:genid4762 . "This subsection describes terms which can describe details of cross-linking results."^^ . "MS"^^ . "MS:1002675"^^ . "cross-linking result details"^^ . _:genid4763 . _:genid4763 . _:genid4763 . _:genid4763 "This subsection describes terms which can describe details of cross-linking results."^^ . _:genid4763 "PSI:PI"^^ . . . _:genid4764 . _:genid4764 . _:genid4764 . _:genid4764 . _:genid4765 . _:genid4765 . _:genid4765 . _:genid4765 . _:genid4766 . _:genid4766 . _:genid4766 . _:genid4766 . "Estimation of the global false discovery rate of proteins-pairs in cross-linking experiments."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002676"^^ . "protein-pair-level global FDR"^^ . _:genid4767 . _:genid4767 . _:genid4767 . _:genid4767 "Estimation of the global false discovery rate of proteins-pairs in cross-linking experiments."^^ . _:genid4767 "PSI:PI"^^ . _:genid4768 . _:genid4768 . _:genid4768 . _:genid4768 "value-type:xsd:double"^^ . _:genid4768 "The allowed value-type for this CV term."^^ . . . _:genid4769 . _:genid4769 . _:genid4769 . _:genid4769 . _:genid4770 . _:genid4770 . _:genid4770 . _:genid4770 . _:genid4771 . _:genid4771 . _:genid4771 . _:genid4771 . "Estimation of the global false discovery rate of residue-pairs in cross-linking experiments."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002677"^^ . "residue-pair-level global FDR"^^ . _:genid4772 . _:genid4772 . _:genid4772 . _:genid4772 "Estimation of the global false discovery rate of residue-pairs in cross-linking experiments."^^ . _:genid4772 "PSI:PI"^^ . _:genid4773 . _:genid4773 . _:genid4773 . _:genid4773 "value-type:xsd:double"^^ . _:genid4773 "The allowed value-type for this CV term."^^ . . . "A supplemental collision-induced dissociation process that occurs in a beam-type collision cell in addition to another primary type of dissociation."^^ . "MS"^^ . "MS:1002678"^^ . "supplemental beam-type collision-induced dissociation"^^ . _:genid4774 . _:genid4774 . _:genid4774 . _:genid4774 "A supplemental collision-induced dissociation process that occurs in a beam-type collision cell in addition to another primary type of dissociation."^^ . _:genid4774 "PSI:MS"^^ . . . "The dissociation of an ion after supplemental collisional excitation."^^ . "MS"^^ . "MS:1002679"^^ . "supplemental collision-induced dissociation"^^ . _:genid4775 . _:genid4775 . _:genid4775 . _:genid4775 "The dissociation of an ion after supplemental collisional excitation."^^ . _:genid4775 "PSI:MS"^^ . . . _:genid4776 . _:genid4776 . _:genid4776 . _:genid4776 . _:genid4777 . _:genid4777 . _:genid4777 . _:genid4777 . "Energy for an ion experiencing supplemental collision with a stationary gas particle resulting in dissociation of the ion."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002680"^^ . "supplemental collision energy"^^ . _:genid4778 . _:genid4778 . _:genid4778 . _:genid4778 "Energy for an ion experiencing supplemental collision with a stationary gas particle resulting in dissociation of the ion."^^ . _:genid4778 "PSI:MS"^^ . _:genid4779 . _:genid4779 . _:genid4779 . _:genid4779 "value-type:xsd:float"^^ . _:genid4779 "The allowed value-type for this CV term."^^ . . . . _:genid4780 . _:genid4780 . _:genid4780 . _:genid4780 . _:genid4781 . _:genid4781 . _:genid4781 . _:genid4781 . "OpenXQuest's combined score for a cross-link spectrum match."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002681"^^ . "OpenXQuest:combined score"^^ . _:genid4782 . _:genid4782 . _:genid4782 . _:genid4782 "OpenXQuest's combined score for a cross-link spectrum match."^^ . _:genid4782 "PSI:PI"^^ . _:genid4783 . _:genid4783 . _:genid4783 . _:genid4783 "value-type:xsd:double"^^ . _:genid4783 "The allowed value-type for this CV term."^^ . . . . _:genid4784 . _:genid4784 . _:genid4784 . _:genid4784 . _:genid4785 . _:genid4785 . _:genid4785 . _:genid4785 . "OpenXQuest's cross-correlation of cross-linked ions subscore."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002682"^^ . "OpenXQuest:xcorr xlink"^^ . _:genid4786 . _:genid4786 . _:genid4786 . _:genid4786 "OpenXQuest's cross-correlation of cross-linked ions subscore."^^ . _:genid4786 "PSI:PI"^^ . _:genid4787 . _:genid4787 . _:genid4787 . _:genid4787 "value-type:xsd:double"^^ . _:genid4787 "The allowed value-type for this CV term."^^ . . . . _:genid4788 . _:genid4788 . _:genid4788 . _:genid4788 . _:genid4789 . _:genid4789 . _:genid4789 . _:genid4789 . "OpenXQuest's cross-correlation of unlinked ions subscore."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002683"^^ . "OpenXQuest:xcorr common"^^ . _:genid4790 . _:genid4790 . _:genid4790 . _:genid4790 "OpenXQuest's cross-correlation of unlinked ions subscore."^^ . _:genid4790 "PSI:PI"^^ . _:genid4791 . _:genid4791 . _:genid4791 . _:genid4791 "value-type:xsd:double"^^ . _:genid4791 "The allowed value-type for this CV term."^^ . . . . _:genid4792 . _:genid4792 . _:genid4792 . _:genid4792 . _:genid4793 . _:genid4793 . _:genid4793 . _:genid4793 . _:genid4794 . _:genid4794 . _:genid4794 . _:genid4794 . "OpenXQuest's match-odds subscore."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002684"^^ . "OpenXQuest:match-odds"^^ . _:genid4795 . _:genid4795 . _:genid4795 . _:genid4795 "OpenXQuest's match-odds subscore."^^ . _:genid4795 "PSI:PI"^^ . _:genid4796 . _:genid4796 . _:genid4796 . _:genid4796 "value-type:xsd:double"^^ . _:genid4796 "The allowed value-type for this CV term."^^ . . . . _:genid4797 . _:genid4797 . _:genid4797 . _:genid4797 . _:genid4798 . _:genid4798 . _:genid4798 . _:genid4798 . _:genid4799 . _:genid4799 . _:genid4799 . _:genid4799 . "OpenXQuest's sum of matched peak intensity subscore."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002685"^^ . "OpenXQuest:intsum"^^ . _:genid4800 . _:genid4800 . _:genid4800 . _:genid4800 "OpenXQuest's sum of matched peak intensity subscore."^^ . _:genid4800 "PSI:PI"^^ . _:genid4801 . _:genid4801 . _:genid4801 . _:genid4801 "value-type:xsd:double"^^ . _:genid4801 "The allowed value-type for this CV term."^^ . . . . _:genid4802 . _:genid4802 . _:genid4802 . _:genid4802 . _:genid4803 . _:genid4803 . _:genid4803 . _:genid4803 . _:genid4804 . _:genid4804 . _:genid4804 . _:genid4804 . "OpenXQuest's weighted percent of total ion current subscore."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002686"^^ . "OpenXQuest:wTIC"^^ . _:genid4805 . _:genid4805 . _:genid4805 . _:genid4805 "OpenXQuest's weighted percent of total ion current subscore."^^ . _:genid4805 "PSI:PI"^^ . _:genid4806 . _:genid4806 . _:genid4806 . _:genid4806 "value-type:xsd:double"^^ . _:genid4806 "The allowed value-type for this CV term."^^ . . . "Attribute of an item in the result of mass spectrometry proteomics data analysis."^^ . "MS"^^ . "MS:1002687"^^ . "analysis attribute"^^ . _:genid4807 . _:genid4807 . _:genid4807 . _:genid4807 "Attribute of an item in the result of mass spectrometry proteomics data analysis."^^ . _:genid4807 "PSI:PI"^^ . . . "Statistic derived from a post-translational modification localization analysis."^^ . "MS"^^ . "MS:1002688"^^ . "PTM localization attribute"^^ . _:genid4808 . _:genid4808 . _:genid4808 . _:genid4808 "Statistic derived from a post-translational modification localization analysis."^^ . _:genid4808 "PSI:PI"^^ . . . "Statistic for a single item derived from a post-translational modification localization analysis."^^ . "MS"^^ . "MS:1002689"^^ . "PTM localization single result statistic"^^ . _:genid4809 . _:genid4809 . _:genid4809 . _:genid4809 "Statistic for a single item derived from a post-translational modification localization analysis."^^ . _:genid4809 "PSI:PI"^^ . . . "Statistic for all items derived from a post-translational modification localization analysis."^^ . "MS"^^ . "MS:1002690"^^ . "PTM localization result list statistic"^^ . _:genid4810 . _:genid4810 . _:genid4810 . _:genid4810 "Statistic for all items derived from a post-translational modification localization analysis."^^ . _:genid4810 "PSI:PI"^^ . . . "Global false localization rate for all localizations in a dataset."^^ . "MS"^^ . "MS:1002691"^^ . "global FLR"^^ . _:genid4811 . _:genid4811 . _:genid4811 . _:genid4811 "Global false localization rate for all localizations in a dataset."^^ . _:genid4811 "PSI:PI"^^ . . . "Local false localization rate for the bottom item in list of localizations sorted from most to least confident."^^ . "MS"^^ . "MS:1002692"^^ . "local FLR at threshold"^^ . _:genid4812 . _:genid4812 . _:genid4812 . _:genid4812 "Local false localization rate for the bottom item in list of localizations sorted from most to least confident."^^ . _:genid4812 "PSI:PI"^^ . . . "Attribute of an identification item in the result of mass spectrometry proteomics data analysis."^^ . "MS"^^ . "MS:1002693"^^ . "identification attribute"^^ . _:genid4813 . _:genid4813 . _:genid4813 . _:genid4813 "Attribute of an identification item in the result of mass spectrometry proteomics data analysis."^^ . _:genid4813 "PSI:PI"^^ . . . "Attribute of a single identification item (as opposed to a list) in the result of mass spectrometry proteomics data analysis."^^ . "MS"^^ . "MS:1002694"^^ . "single identification result attribute"^^ . _:genid4814 . _:genid4814 . _:genid4814 . _:genid4814 "Attribute of a single identification item (as opposed to a list) in the result of mass spectrometry proteomics data analysis."^^ . _:genid4814 "PSI:PI"^^ . . . "Fragment ion corresponding to an isobaric label artifact."^^ . "MS"^^ . "MS:1002695"^^ . "frag: isobaric label ion"^^ . _:genid4815 . _:genid4815 . _:genid4815 . _:genid4815 "Fragment ion corresponding to an isobaric label artifact."^^ . _:genid4815 "PSI:PI"^^ . . . "Fragment ion is an isotopic peak other than that monoisotopic peak. This is used in conjuction with another ion type, such as frag: y ion."^^ . "MS"^^ . "MS:1002697"^^ . "secondary isotope peak"^^ . _:genid4816 . _:genid4816 . _:genid4816 . _:genid4816 "Fragment ion is an isotopic peak other than that monoisotopic peak. This is used in conjuction with another ion type, such as frag: y ion."^^ . _:genid4816 "PSI:PI"^^ . . . "An attribute of the protein cluster concept as used in mzIdentML."^^ . "MS"^^ . "MS:1002698"^^ . "protein cluster identification attribute"^^ . _:genid4817 . _:genid4817 . _:genid4817 . _:genid4817 "An attribute of the protein cluster concept as used in mzIdentML."^^ . _:genid4817 "PSI:PI"^^ . . . "General property of an entire result list."^^ . "MS"^^ . "MS:1002699"^^ . "result list attribute"^^ . _:genid4818 . _:genid4818 . _:genid4818 . _:genid4818 "General property of an entire result list."^^ . _:genid4818 "PSI:PI"^^ . . . "General property of the list of all PSMs."^^ . "MS"^^ . "MS:1002700"^^ . "PSM-level result list attribute"^^ . _:genid4819 . _:genid4819 . _:genid4819 . _:genid4819 "General property of the list of all PSMs."^^ . _:genid4819 "PSI:PI"^^ . . . "Statistic pertaining to the full list of all PSMs."^^ . "MS"^^ . "MS:1002701"^^ . "PSM-level result list statistic"^^ . _:genid4820 . _:genid4820 . _:genid4820 . _:genid4820 "Statistic pertaining to the full list of all PSMs."^^ . _:genid4820 "PSI:PI"^^ . . . "General property of all peptide sequences in the list."^^ . "MS"^^ . "MS:1002702"^^ . "peptide sequence-level result list attribute"^^ . _:genid4821 . _:genid4821 . _:genid4821 . _:genid4821 "General property of all peptide sequences in the list."^^ . _:genid4821 "PSI:PI"^^ . . . "Statistic pertaining to all peptide sequences in the list."^^ . "MS"^^ . "MS:1002703"^^ . "peptide sequence-level result list statistic"^^ . _:genid4822 . _:genid4822 . _:genid4822 . _:genid4822 "Statistic pertaining to all peptide sequences in the list."^^ . _:genid4822 "PSI:PI"^^ . . . "Attribute of an entire protein list."^^ . "MS"^^ . "MS:1002704"^^ . "protein-level result list attribute"^^ . _:genid4823 . _:genid4823 . _:genid4823 . _:genid4823 "Attribute of an entire protein list."^^ . _:genid4823 "PSI:PI"^^ . . . "A statistical metric of an entire protein list."^^ . "MS"^^ . "MS:1002705"^^ . "protein-level result list statistic"^^ . _:genid4824 . _:genid4824 . _:genid4824 . _:genid4824 "A statistical metric of an entire protein list."^^ . _:genid4824 "PSI:PI"^^ . . . "Attrbiute of an entire list of protein groups."^^ . "MS"^^ . "MS:1002706"^^ . "protein group-level result list statistic"^^ . _:genid4825 . _:genid4825 . _:genid4825 . _:genid4825 "Attrbiute of an entire list of protein groups."^^ . _:genid4825 "PSI:PI"^^ . . . "Regular expression for LysargiNase."^^ . "MS"^^ . "MS:1002707"^^ . "(?=[KR])"^^ . _:genid4826 . _:genid4826 . _:genid4826 . _:genid4826 "Regular expression for LysargiNase."^^ . _:genid4826 "PSI:PI"^^ . . . _:genid4827 . _:genid4827 . _:genid4827 . _:genid4827 . "Metalloproteinase found in Methanosarcina acetivorans that cleaves on the N-terminal side of lysine and arginine residues."^^ . "Tryp-N"^^ . "MS"^^ . "MS:1002708"^^ . "LysargiNase"^^ . _:genid4828 . _:genid4828 . _:genid4828 . _:genid4828 "Metalloproteinase found in Methanosarcina acetivorans that cleaves on the N-terminal side of lysine and arginine residues."^^ . _:genid4828 "PMID:25419962"^^ . . "A data type representing more than a single value."^^ . "MS"^^ . "MS:1002709"^^ . "compound data type"^^ . . . "A data type defining a list of values of a single type."^^ . "MS"^^ . "MS:1002710"^^ . "list of type"^^ . . . _:genid4829 . _:genid4829 . _:genid4829 . _:genid4829 . "A list of xsd:string."^^ . "MS"^^ . "MS:1002711"^^ . "list of strings"^^ . . . _:genid4830 . _:genid4830 . _:genid4830 . _:genid4830 . "A list of xsd:integer."^^ . "MS"^^ . "MS:1002712"^^ . "list of integers"^^ . . . _:genid4831 . _:genid4831 . _:genid4831 . _:genid4831 . "A list of xsd:float."^^ . "MS"^^ . "MS:1002713"^^ . "list of floats"^^ . . . "LECO bench-top GC time-of-flight mass spectrometer."^^ . "MS"^^ . "MS:1002719"^^ . "Pegasus BT"^^ . _:genid4832 . _:genid4832 . _:genid4832 . _:genid4832 "LECO bench-top GC time-of-flight mass spectrometer."^^ . _:genid4832 "PSI:PI"^^ . . . "PNNL top-down/bottom-up analysis software for identifying peptides and proteoforms in fragmentation mass spectra."^^ . "MS"^^ . "MS:1002720"^^ . "MSPathFinder"^^ . _:genid4833 . _:genid4833 . _:genid4833 . _:genid4833 "PNNL top-down/bottom-up analysis software for identifying peptides and proteoforms in fragmentation mass spectra."^^ . _:genid4833 "PSI:PI"^^ . . . . _:genid4834 . _:genid4834 . _:genid4834 . _:genid4834 . _:genid4835 . _:genid4835 . _:genid4835 . _:genid4835 . "MSPathFinder spectral E-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002721"^^ . "MSPathFinder:SpecEValue"^^ . _:genid4836 . _:genid4836 . _:genid4836 . _:genid4836 "MSPathFinder spectral E-value."^^ . _:genid4836 "PSI:PI"^^ . _:genid4837 . _:genid4837 . _:genid4837 . _:genid4837 "value-type:xsd:double"^^ . _:genid4837 "The allowed value-type for this CV term."^^ . . . . _:genid4838 . _:genid4838 . _:genid4838 . _:genid4838 . _:genid4839 . _:genid4839 . _:genid4839 . _:genid4839 . "MSPathFinder E-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002722"^^ . "MSPathFinder:EValue"^^ . _:genid4840 . _:genid4840 . _:genid4840 . _:genid4840 "MSPathFinder E-value."^^ . _:genid4840 "PSI:PI"^^ . _:genid4841 . _:genid4841 . _:genid4841 . _:genid4841 "value-type:xsd:double"^^ . _:genid4841 "The allowed value-type for this CV term."^^ . . . . _:genid4842 . _:genid4842 . _:genid4842 . _:genid4842 . "MSPathFinder Q-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002723"^^ . "MSPathFinder:QValue"^^ . _:genid4843 . _:genid4843 . _:genid4843 . _:genid4843 "MSPathFinder Q-value."^^ . _:genid4843 "PSI:PI"^^ . _:genid4844 . _:genid4844 . _:genid4844 . _:genid4844 "value-type:xsd:double"^^ . _:genid4844 "The allowed value-type for this CV term."^^ . . . _:genid4845 . _:genid4845 . _:genid4845 . _:genid4845 . "MSPathFinder peptide-level Q-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002724"^^ . "MSPathFinder:PepQValue"^^ . _:genid4846 . _:genid4846 . _:genid4846 . _:genid4846 "MSPathFinder peptide-level Q-value."^^ . _:genid4846 "PSI:PI"^^ . _:genid4847 . _:genid4847 . _:genid4847 . _:genid4847 "value-type:xsd:double"^^ . _:genid4847 "The allowed value-type for this CV term."^^ . . . _:genid4848 . _:genid4848 . _:genid4848 . _:genid4848 . "MSPathFinder raw score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002725"^^ . "MSPathFinder:RawScore"^^ . _:genid4849 . _:genid4849 . _:genid4849 . _:genid4849 "MSPathFinder raw score."^^ . _:genid4849 "PSI:PI"^^ . _:genid4850 . _:genid4850 . _:genid4850 . _:genid4850 "value-type:xsd:double"^^ . _:genid4850 "The allowed value-type for this CV term."^^ . . . "Waters Corporation SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer."^^ . "MS"^^ . "MS:1002726"^^ . "SYNAPT G2-Si"^^ . _:genid4851 . _:genid4851 . _:genid4851 . _:genid4851 "Waters Corporation SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer."^^ . _:genid4851 "PSI:PI"^^ . . . "Waters Corporation MALDI SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer."^^ . "MS"^^ . "MS:1002727"^^ . "MALDI SYNAPT G2-Si"^^ . _:genid4852 . _:genid4852 . _:genid4852 . _:genid4852 "Waters Corporation MALDI SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer."^^ . _:genid4852 "PSI:PI"^^ . . . "Waters Corporation Vion IMS QTof orthogonal acceleration time-of-flight mass spectrometer."^^ . "MS"^^ . "MS:1002728"^^ . "Vion IMS QTof"^^ . _:genid4853 . _:genid4853 . _:genid4853 . _:genid4853 "Waters Corporation Vion IMS QTof orthogonal acceleration time-of-flight mass spectrometer."^^ . _:genid4853 "PSI:PI"^^ . . . "Waters Corporation Xevo G2 XS Tof orthogonal acceleration time-of-flight mass spectrometer."^^ . "MS"^^ . "MS:1002729"^^ . "Xevo G2 XS Tof"^^ . _:genid4854 . _:genid4854 . _:genid4854 . _:genid4854 "Waters Corporation Xevo G2 XS Tof orthogonal acceleration time-of-flight mass spectrometer."^^ . _:genid4854 "PSI:PI"^^ . . . "Waters Corporation Xevo TQ-XS triple quadrupole mass spectrometer."^^ . "MS"^^ . "MS:1002730"^^ . "Xevo TQ-XS"^^ . _:genid4855 . _:genid4855 . _:genid4855 . _:genid4855 "Waters Corporation Xevo TQ-XS triple quadrupole mass spectrometer."^^ . _:genid4855 "PSI:PI"^^ . . . "Waters Corporation Xevo TQ-S micro triple quadrupole mass spectrometer."^^ . "MS"^^ . "MS:1002731"^^ . "Xevo TQ-S micro"^^ . _:genid4856 . _:genid4856 . _:genid4856 . _:genid4856 "Waters Corporation Xevo TQ-S micro triple quadrupole mass spectrometer."^^ . _:genid4856 "PSI:PI"^^ . . . "Thermo Scientific Orbitrap Fusion Lumos mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers."^^ . "MS"^^ . "MS:1002732"^^ . "Orbitrap Fusion Lumos"^^ . _:genid4857 . _:genid4857 . _:genid4857 . _:genid4857 "Thermo Scientific Orbitrap Fusion Lumos mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers."^^ . _:genid4857 "PSI:PI"^^ . . . _:genid4858 . _:genid4858 . _:genid4858 . _:genid4858 . "The number of MS2 spectra identified for a peptide sequence specified by the amino acid one-letter codes plus optional PTMs in spectral counting."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002733"^^ . "peptide-level spectral count"^^ . _:genid4859 . _:genid4859 . _:genid4859 . _:genid4859 "The number of MS2 spectra identified for a peptide sequence specified by the amino acid one-letter codes plus optional PTMs in spectral counting."^^ . _:genid4859 "PSI:PI"^^ . _:genid4860 . _:genid4860 . _:genid4860 . _:genid4860 "value-type:xsd:int"^^ . _:genid4860 "The allowed value-type for this CV term."^^ . . . _:genid4861 . _:genid4861 . _:genid4861 . _:genid4861 . "The number of MS2 spectra identified for a molecular ion defined by the peptide sequence represented by the amino acid one-letter codes, plus optional PTMs plus optional charged aducts plus the charge state, in spectral counting."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1002734"^^ . "peptide ion-level spectral count"^^ . _:genid4862 . _:genid4862 . _:genid4862 . _:genid4862 "The number of MS2 spectra identified for a molecular ion defined by the peptide sequence represented by the amino acid one-letter codes, plus optional PTMs plus optional charged aducts plus the charge state, in spectral counting."^^ . _:genid4862 "PSI:PI"^^ . _:genid4863 . _:genid4863 . _:genid4863 . _:genid4863 "value-type:xsd:int"^^ . _:genid4863 "The allowed value-type for this CV term."^^ . . . "The data type of the value reported in a QuantLayer for a feature."^^ . "MS"^^ . "MS:1002735"^^ . "feature-level quantification datatype"^^ . _:genid4864 . _:genid4864 . _:genid4864 . _:genid4864 "The data type of the value reported in a QuantLayer for a feature."^^ . _:genid4864 "PSI:PI"^^ . . . "The data type of the value reported in a QuantLayer for a PSM."^^ . "MS"^^ . "MS:1002736"^^ . "PSM-level quantification datatype"^^ . _:genid4865 . _:genid4865 . _:genid4865 . _:genid4865 "The data type of the value reported in a QuantLayer for a PSM."^^ . _:genid4865 "PSI:PI"^^ . . . "The data type of the value reported in a QuantLayer for a peptide."^^ . "MS"^^ . "MS:1002737"^^ . "peptide-level quantification datatype"^^ . _:genid4866 . _:genid4866 . _:genid4866 . _:genid4866 "The data type of the value reported in a QuantLayer for a peptide."^^ . _:genid4866 "PSI:PI"^^ . . . "The data type of the value reported in a QuantLayer for a protein."^^ . "MS"^^ . "MS:1002738"^^ . "protein-level quantification datatype"^^ . _:genid4867 . _:genid4867 . _:genid4867 . _:genid4867 "The data type of the value reported in a QuantLayer for a protein."^^ . _:genid4867 "PSI:PI"^^ . . . "The data type of the value reported in a QuantLayer for a protein group."^^ . "MS"^^ . "MS:1002739"^^ . "protein group-level quantification datatype"^^ . _:genid4868 . _:genid4868 . _:genid4868 . _:genid4868 "The data type of the value reported in a QuantLayer for a protein group."^^ . _:genid4868 "PSI:PI"^^ . . . "Within the context of a proteogenomics approach, a peptide sequence that has not been mapped to a genomic location."^^ . "MS"^^ . "MS:1002740"^^ . "unmapped peptide"^^ . _:genid4869 . _:genid4869 . _:genid4869 . _:genid4869 "Within the context of a proteogenomics approach, a peptide sequence that has not been mapped to a genomic location."^^ . _:genid4869 "PSI:PI"^^ . . . "Within the context of a proteogenomics approach, a protein sequence that has not been mapped to a genomic location."^^ . "MS"^^ . "MS:1002741"^^ . "unmapped protein"^^ . _:genid4870 . _:genid4870 . _:genid4870 . _:genid4870 "Within the context of a proteogenomics approach, a protein sequence that has not been mapped to a genomic location."^^ . _:genid4870 "PSI:PI"^^ . . . "A data array of noise values."^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000523"^^ . "MS"^^ . "MS:1002742"^^ . "noise array"^^ . _:genid4871 . _:genid4871 . _:genid4871 . _:genid4871 "A data array of noise values."^^ . _:genid4871 "PSI:MS"^^ . _:genid4872 . _:genid4872 . _:genid4872 . _:genid4872 "binary-data-type:MS:1000521"^^ . _:genid4872 "32-bit float"^^ . _:genid4873 . _:genid4873 . _:genid4873 . _:genid4873 "binary-data-type:MS:1000523"^^ . _:genid4873 "64-bit float"^^ . . . _:genid4874 . _:genid4874 . _:genid4874 . _:genid4874 . "A data array of parallel, independent m/z values for a sampling of noise across a spectrum (typically much smaller than MS:1000514, the m/z array)."^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000523"^^ . "MS"^^ . "MS:1002743"^^ . "sampled noise m/z array"^^ . _:genid4875 . _:genid4875 . _:genid4875 . _:genid4875 "A data array of parallel, independent m/z values for a sampling of noise across a spectrum (typically much smaller than MS:1000514, the m/z array)."^^ . _:genid4875 "PSI:MS"^^ . _:genid4876 . _:genid4876 . _:genid4876 . _:genid4876 "binary-data-type:MS:1000521"^^ . _:genid4876 "32-bit float"^^ . _:genid4877 . _:genid4877 . _:genid4877 . _:genid4877 "binary-data-type:MS:1000523"^^ . _:genid4877 "64-bit float"^^ . . . _:genid4878 . _:genid4878 . _:genid4878 . _:genid4878 . "A data array of intensity values for the amplitude of noise variation superposed on the baseline (MS:1002745) across a spectrum (for use with MS:1002743, sampled noise m/z array)."^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000523"^^ . "MS"^^ . "MS:1002744"^^ . "sampled noise intensity array"^^ . _:genid4879 . _:genid4879 . _:genid4879 . _:genid4879 "A data array of intensity values for the amplitude of noise variation superposed on the baseline (MS:1002745) across a spectrum (for use with MS:1002743, sampled noise m/z array)."^^ . _:genid4879 "PSI:MS"^^ . _:genid4880 . _:genid4880 . _:genid4880 . _:genid4880 "binary-data-type:MS:1000521"^^ . _:genid4880 "32-bit float"^^ . _:genid4881 . _:genid4881 . _:genid4881 . _:genid4881 "binary-data-type:MS:1000523"^^ . _:genid4881 "64-bit float"^^ . . . "A data array of baseline intensity values (the intensity in the absence of analytes) for a sampling of noise across a spectrum (for use with MS:1002743, sampled noise m/z array)."^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000523"^^ . "MS"^^ . "MS:1002745"^^ . "sampled noise baseline array"^^ . _:genid4882 . _:genid4882 . _:genid4882 . _:genid4882 "A data array of baseline intensity values (the intensity in the absence of analytes) for a sampling of noise across a spectrum (for use with MS:1002743, sampled noise m/z array)."^^ . _:genid4882 "PSI:MS"^^ . _:genid4883 . _:genid4883 . _:genid4883 . _:genid4883 "binary-data-type:MS:1000521"^^ . _:genid4883 "32-bit float"^^ . _:genid4884 . _:genid4884 . _:genid4884 . _:genid4884 "binary-data-type:MS:1000523"^^ . _:genid4884 "64-bit float"^^ . . . "Compression using MS-Numpress linear prediction compression and zlib."^^ . "MS"^^ . "MS:1002746"^^ . "MS-Numpress linear prediction compression followed by zlib compression"^^ . _:genid4885 . _:genid4885 . _:genid4885 . _:genid4885 "Compression using MS-Numpress linear prediction compression and zlib."^^ . _:genid4885 "https://github.com/ms-numpress/ms-numpress"^^ . . . "Compression using MS-Numpress positive integer compression and zlib."^^ . "MS"^^ . "MS:1002747"^^ . "MS-Numpress positive integer compression followed by zlib compression"^^ . _:genid4886 . _:genid4886 . _:genid4886 . _:genid4886 "Compression using MS-Numpress positive integer compression and zlib."^^ . _:genid4886 "https://github.com/ms-numpress/ms-numpress"^^ . . . "Compression using MS-Numpress short logged float compression and zlib."^^ . "MS"^^ . "MS:1002748"^^ . "MS-Numpress short logged float compression followed by zlib compression"^^ . _:genid4887 . _:genid4887 . _:genid4887 . _:genid4887 "Compression using MS-Numpress short logged float compression and zlib."^^ . _:genid4887 "https://github.com/ms-numpress/ms-numpress"^^ . . . _:genid4888 . _:genid4888 . _:genid4888 . _:genid4888 . "Means that Mascot has integrated the search results of database and spectral library search into a single data set."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002749"^^ . "Mascot:IntegratedSpectralLibrarySearch"^^ . _:genid4889 . _:genid4889 . _:genid4889 . _:genid4889 "Means that Mascot has integrated the search results of database and spectral library search into a single data set."^^ . _:genid4889 "PSI:PI"^^ . _:genid4890 . _:genid4890 . _:genid4890 . _:genid4890 "value-type:xsd:boolean"^^ . _:genid4890 "The allowed value-type for this CV term."^^ . . . "Search tool of the NIST (National Institute of Standards and Technology) for spectral library searches."^^ . "MS"^^ . "MS:1002750"^^ . "NIST MSPepSearch"^^ . _:genid4891 . _:genid4891 . _:genid4891 . _:genid4891 "Search tool of the NIST (National Institute of Standards and Technology) for spectral library searches."^^ . _:genid4891 "PSI:PI"^^ . . . "MSP text format defined by the NIST."^^ . "MS"^^ . "MS:1002751"^^ . "NIST MSP format"^^ . _:genid4892 . _:genid4892 . _:genid4892 . _:genid4892 "MSP text format defined by the NIST."^^ . _:genid4892 "PSI:PI"^^ . . . "Database containing spectra."^^ . "MS"^^ . "MS:1002752"^^ . "database type spectral library"^^ . _:genid4893 . _:genid4893 . _:genid4893 . _:genid4893 "Database containing spectra."^^ . _:genid4893 "PSI:PI"^^ . . . "Value range for scores."^^ . "MS"^^ . "MS:1002753"^^ . "value between 0 and 1000 inclusive"^^ . _:genid4894 . _:genid4894 . _:genid4894 . _:genid4894 "Value range for scores."^^ . _:genid4894 "PSI:PI"^^ . . . _:genid4895 . _:genid4895 . _:genid4895 . _:genid4895 . _:genid4896 . _:genid4896 . _:genid4896 . _:genid4896 . "MSPepSearch score (0 for entirely dissimilar and 1000 for identical observed spectrum and library spectrum."^^ . "MS"^^ . "MS:1002754"^^ . "MSPepSearch:score"^^ . _:genid4897 . _:genid4897 . _:genid4897 . _:genid4897 "MSPepSearch score (0 for entirely dissimilar and 1000 for identical observed spectrum and library spectrum."^^ . _:genid4897 "PSI:PI"^^ . . . "A combined MS2 (with fragment ions) and spectral library search."^^ . "MS"^^ . "MS:1002755"^^ . "combined ms-ms + spectral library search"^^ . _:genid4898 . _:genid4898 . _:genid4898 . _:genid4898 "A combined MS2 (with fragment ions) and spectral library search."^^ . _:genid4898 "PSI:PI"^^ . . . "Quantitation analysis using the Thermo Fisher sulfhydryl-reactive iodo tandem mass tag (iodoTMT) labelling workflow."^^ . "MS"^^ . "MS:1002756"^^ . "iodoTMT quantitation analysis"^^ . _:genid4899 . _:genid4899 . _:genid4899 . _:genid4899 "Quantitation analysis using the Thermo Fisher sulfhydryl-reactive iodo tandem mass tag (iodoTMT) labelling workflow."^^ . _:genid4899 "PMID:24926564"^^ . _:genid4899 "PSI:PI"^^ . . . "Quantitation analysis using the Thermo Fisher carbonyl-reactive glyco-tandem mass tag (glyco-TMT) labelling workflow."^^ . "MS"^^ . "MS:1002757"^^ . "glyco-TMT quantitation analysis"^^ . _:genid4900 . _:genid4900 . _:genid4900 . _:genid4900 "Quantitation analysis using the Thermo Fisher carbonyl-reactive glyco-tandem mass tag (glyco-TMT) labelling workflow."^^ . _:genid4900 "PMID:22455665"^^ . _:genid4900 "PSI:PI"^^ . . . "Quantitation analysis using the Thermo Fisher carbonyl-reactive aminoxy tandem mass tag (aminoxyTMT) labelling workflow."^^ . "MS"^^ . "MS:1002758"^^ . "aminoxyTMT quantitation analysis"^^ . _:genid4901 . _:genid4901 . _:genid4901 . _:genid4901 "Quantitation analysis using the Thermo Fisher carbonyl-reactive aminoxy tandem mass tag (aminoxyTMT) labelling workflow."^^ . _:genid4901 "PMID:25337643"^^ . _:genid4901 "PSI:PI"^^ . . . "Quantitation analysis using the Thermo Fisher carbonyl-reactive hydrazide tandem mass tag (hydrazide-TMT) labelling workflow."^^ . "MS"^^ . "MS:1002759"^^ . "hydrazideTMT quantitation analysis"^^ . _:genid4902 . _:genid4902 . _:genid4902 . _:genid4902 "Quantitation analysis using the Thermo Fisher carbonyl-reactive hydrazide tandem mass tag (hydrazide-TMT) labelling workflow."^^ . _:genid4902 "PMID:25337643"^^ . _:genid4902 "PSI:PI"^^ . . . "Quantification analysis using the carbonyl-reactive isobaric tags for relative and absolute quantification hydrazide (iTRAQH) labelling workflow."^^ . "MS"^^ . "MS:1002760"^^ . "iTRAQH quantitation analysis"^^ . _:genid4903 . _:genid4903 . _:genid4903 . _:genid4903 "Quantification analysis using the carbonyl-reactive isobaric tags for relative and absolute quantification hydrazide (iTRAQH) labelling workflow."^^ . _:genid4903 "PMID:22926130"^^ . _:genid4903 "PSI:PI"^^ . . . "Quantification analysis using the amine-reactive deuterium isobaric amine reactive tag (DiART) labelling workflow."^^ . "MS"^^ . "MS:1002761"^^ . "DiART quantitation analysis"^^ . _:genid4904 . _:genid4904 . _:genid4904 . _:genid4904 "Quantification analysis using the amine-reactive deuterium isobaric amine reactive tag (DiART) labelling workflow."^^ . _:genid4904 "PMID:20715779"^^ . _:genid4904 "PSI:PI"^^ . . . "Quantification analysis using the amine-reactive dimethyl leucine (DiLeu) tag labelling workflow."^^ . "MS"^^ . "MS:1002762"^^ . "DiLeu quantitation analysis"^^ . _:genid4905 . _:genid4905 . _:genid4905 . _:genid4905 "Quantification analysis using the amine-reactive dimethyl leucine (DiLeu) tag labelling workflow."^^ . _:genid4905 "PMID:20715779"^^ . _:genid4905 "PSI:PI"^^ . . . "The name of the sample labelled with the TMT reagent 127N."^^ . "MS"^^ . "MS:1002763"^^ . "TMT reagent 127N"^^ . _:genid4906 . _:genid4906 . _:genid4906 . _:genid4906 "The name of the sample labelled with the TMT reagent 127N."^^ . _:genid4906 "PSI:PI"^^ . . . "The name of the sample labelled with the TMT reagent 127C."^^ . "MS"^^ . "MS:1002764"^^ . "TMT reagent 127C"^^ . _:genid4907 . _:genid4907 . _:genid4907 . _:genid4907 "The name of the sample labelled with the TMT reagent 127C."^^ . _:genid4907 "PSI:PI"^^ . . . "The name of the sample labelled with the TMT reagent 128N."^^ . "MS"^^ . "MS:1002765"^^ . "TMT reagent 128N"^^ . _:genid4908 . _:genid4908 . _:genid4908 . _:genid4908 "The name of the sample labelled with the TMT reagent 128N."^^ . _:genid4908 "PSI:PI"^^ . . . "The name of the sample labelled with the TMT reagent 128C."^^ . "MS"^^ . "MS:1002766"^^ . "TMT reagent 128C"^^ . _:genid4909 . _:genid4909 . _:genid4909 . _:genid4909 "The name of the sample labelled with the TMT reagent 128C."^^ . _:genid4909 "PSI:PI"^^ . . . "The name of the sample labelled with the TMT reagent 129N."^^ . "MS"^^ . "MS:1002767"^^ . "TMT reagent 129N"^^ . _:genid4910 . _:genid4910 . _:genid4910 . _:genid4910 "The name of the sample labelled with the TMT reagent 129N."^^ . _:genid4910 "PSI:PI"^^ . . . "The name of the sample labelled with the TMT reagent 129C."^^ . "MS"^^ . "MS:1002768"^^ . "TMT reagent 129C"^^ . _:genid4911 . _:genid4911 . _:genid4911 . _:genid4911 "The name of the sample labelled with the TMT reagent 129C."^^ . _:genid4911 "PSI:PI"^^ . . . "The name of the sample labelled with the TMT reagent 130N."^^ . "MS"^^ . "MS:1002769"^^ . "TMT reagent 130N"^^ . _:genid4912 . _:genid4912 . _:genid4912 . _:genid4912 "The name of the sample labelled with the TMT reagent 130N."^^ . _:genid4912 "PSI:PI"^^ . . . "The name of the sample labelled with the TMT reagent 130C."^^ . "MS"^^ . "MS:1002770"^^ . "TMT reagent 130C"^^ . _:genid4913 . _:genid4913 . _:genid4913 . _:genid4913 "The name of the sample labelled with the TMT reagent 130C."^^ . _:genid4913 "PSI:PI"^^ . . . "Deuterium isobaric amine reactive tag labeling reagent."^^ . "MS"^^ . "MS:1002771"^^ . "DiART reagent"^^ . _:genid4914 . _:genid4914 . _:genid4914 . _:genid4914 "Deuterium isobaric amine reactive tag labeling reagent."^^ . _:genid4914 "PSI:PI"^^ . . . "The name of the sample labelled with the DiART reagent 114."^^ . "MS"^^ . "MS:1002772"^^ . "DiART reagent 114"^^ . _:genid4915 . _:genid4915 . _:genid4915 . _:genid4915 "The name of the sample labelled with the DiART reagent 114."^^ . _:genid4915 "PSI:PI"^^ . . . "The name of the sample labelled with the DiART reagent 115."^^ . "MS"^^ . "MS:1002773"^^ . "DiART reagent 115"^^ . _:genid4916 . _:genid4916 . _:genid4916 . _:genid4916 "The name of the sample labelled with the DiART reagent 115."^^ . _:genid4916 "PSI:PI"^^ . . . "The name of the sample labelled with the DiART reagent 116."^^ . "MS"^^ . "MS:1002774"^^ . "DiART reagent 116"^^ . _:genid4917 . _:genid4917 . _:genid4917 . _:genid4917 "The name of the sample labelled with the DiART reagent 116."^^ . _:genid4917 "PSI:PI"^^ . . . "The name of the sample labelled with the DiART reagent 117."^^ . "MS"^^ . "MS:1002775"^^ . "DiART reagent 117"^^ . _:genid4918 . _:genid4918 . _:genid4918 . _:genid4918 "The name of the sample labelled with the DiART reagent 117."^^ . _:genid4918 "PSI:PI"^^ . . . "The name of the sample labelled with the DiART reagent 118."^^ . "MS"^^ . "MS:1002776"^^ . "DiART reagent 118"^^ . _:genid4919 . _:genid4919 . _:genid4919 . _:genid4919 "The name of the sample labelled with the DiART reagent 118."^^ . _:genid4919 "PSI:PI"^^ . . . "The name of the sample labelled with the DiART reagent 119."^^ . "MS"^^ . "MS:1002777"^^ . "DiART reagent 119"^^ . _:genid4920 . _:genid4920 . _:genid4920 . _:genid4920 "The name of the sample labelled with the DiART reagent 119."^^ . _:genid4920 "PSI:PI"^^ . . . "Dimethyl leucine labeling reagent."^^ . "MS"^^ . "MS:1002778"^^ . "DiLeu reagent"^^ . _:genid4921 . _:genid4921 . _:genid4921 . _:genid4921 "Dimethyl leucine labeling reagent."^^ . _:genid4921 "PSI:PI"^^ . . . "The name of the sample labelled with the DiLeu reagent 115."^^ . "MS"^^ . "MS:1002779"^^ . "DiLeu reagent 115"^^ . _:genid4922 . _:genid4922 . _:genid4922 . _:genid4922 "The name of the sample labelled with the DiLeu reagent 115."^^ . _:genid4922 "PSI:PI"^^ . . . "The name of the sample labelled with the DiLeu reagent 116."^^ . "MS"^^ . "MS:1002780"^^ . "DiLeu reagent 116"^^ . _:genid4923 . _:genid4923 . _:genid4923 . _:genid4923 "The name of the sample labelled with the DiLeu reagent 116."^^ . _:genid4923 "PSI:PI"^^ . . . "The name of the sample labelled with the DiLeu reagent 117."^^ . "MS"^^ . "MS:1002781"^^ . "DiLeu reagent 117"^^ . _:genid4924 . _:genid4924 . _:genid4924 . _:genid4924 "The name of the sample labelled with the DiLeu reagent 117."^^ . _:genid4924 "PSI:PI"^^ . . . "The name of the sample labelled with the DiLeu reagent 118."^^ . "MS"^^ . "MS:1002782"^^ . "DiLeu reagent 118"^^ . _:genid4925 . _:genid4925 . _:genid4925 . _:genid4925 "The name of the sample labelled with the DiLeu reagent 118."^^ . _:genid4925 "PSI:PI"^^ . . . "The 6550 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . "MS"^^ . "MS:1002783"^^ . "6550 iFunnel Q-TOF LC/MS"^^ . _:genid4926 . _:genid4926 . _:genid4926 . _:genid4926 "The 6550 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . _:genid4926 "PSI:MS"^^ . . . "The 6550A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . "MS"^^ . "MS:1002784"^^ . "6550A iFunnel Q-TOF LC/MS"^^ . _:genid4927 . _:genid4927 . _:genid4927 . _:genid4927 "The 6550A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . _:genid4927 "PSI:MS"^^ . . . "The 6520B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . "MS"^^ . "MS:1002785"^^ . "6520B Q-TOF LC/MS"^^ . _:genid4928 . _:genid4928 . _:genid4928 . _:genid4928 "The 6520B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . _:genid4928 "PSI:MS"^^ . . . "The 6530A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . "MS"^^ . "MS:1002786"^^ . "6530A Q-TOF LC/MS"^^ . _:genid4929 . _:genid4929 . _:genid4929 . _:genid4929 "The 6530A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . _:genid4929 "PSI:MS"^^ . . . "The 6530B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . "MS"^^ . "MS:1002787"^^ . "6530B Q-TOF LC/MS"^^ . _:genid4930 . _:genid4930 . _:genid4930 . _:genid4930 "The 6530B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . _:genid4930 "PSI:MS"^^ . . . "The 6538 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . "MS"^^ . "MS:1002788"^^ . "6538 Q-TOF LC/MS"^^ . _:genid4931 . _:genid4931 . _:genid4931 . _:genid4931 "The 6538 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . _:genid4931 "PSI:MS"^^ . . . "The 6540 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . "MS"^^ . "MS:1002789"^^ . "6540 Q-TOF LC/MS"^^ . _:genid4932 . _:genid4932 . _:genid4932 . _:genid4932 "The 6540 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . _:genid4932 "PSI:MS"^^ . . . "The 6542 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . "MS"^^ . "MS:1002790"^^ . "6542 Q-TOF LC/MS"^^ . _:genid4933 . _:genid4933 . _:genid4933 . _:genid4933 "The 6542 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . _:genid4933 "PSI:MS"^^ . . . "The 6545 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . "MS"^^ . "MS:1002791"^^ . "6545 Q-TOF LC/MS"^^ . _:genid4934 . _:genid4934 . _:genid4934 . _:genid4934 "The 6545 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . _:genid4934 "PSI:MS"^^ . . . "The 6560 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . "MS"^^ . "MS:1002792"^^ . "6560 Q-TOF LC/MS"^^ . _:genid4935 . _:genid4935 . _:genid4935 . _:genid4935 "The 6560 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . _:genid4935 "PSI:MS"^^ . . . "The 6570 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . "MS"^^ . "MS:1002793"^^ . "6570 Q-TOF LC/MS"^^ . _:genid4936 . _:genid4936 . _:genid4936 . _:genid4936 "The 6570 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . _:genid4936 "PSI:MS"^^ . . . "The 6120B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers."^^ . "MS"^^ . "MS:1002794"^^ . "6120B Quadrupole LC/MS"^^ . _:genid4937 . _:genid4937 . _:genid4937 . _:genid4937 "The 6120B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers."^^ . _:genid4937 "PSI:MS"^^ . . . "The 6150 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers."^^ . "MS"^^ . "MS:1002795"^^ . "6150 Quadrupole LC/MS"^^ . _:genid4938 . _:genid4938 . _:genid4938 . _:genid4938 "The 6150 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers."^^ . _:genid4938 "PSI:MS"^^ . . . "The 6224 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . "MS"^^ . "MS:1002796"^^ . "6224 Time-of-Flight LC/MS"^^ . _:genid4939 . _:genid4939 . _:genid4939 . _:genid4939 "The 6224 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . _:genid4939 "PSI:MS"^^ . . . "The 6230A Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . "MS"^^ . "MS:1002797"^^ . "6230A Time-of-Flight LC/MS"^^ . _:genid4940 . _:genid4940 . _:genid4940 . _:genid4940 "The 6230A Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . _:genid4940 "PSI:MS"^^ . . . "The 6230B Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . "MS"^^ . "MS:1002798"^^ . "6230B Time-of-Flight LC/MS"^^ . _:genid4941 . _:genid4941 . _:genid4941 . _:genid4941 "The 6230B Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer."^^ . _:genid4941 "PSI:MS"^^ . . . "The 6430 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^ . "MS"^^ . "MS:1002799"^^ . "6430 Triple Quadrupole LC/MS"^^ . _:genid4942 . _:genid4942 . _:genid4942 . _:genid4942 "The 6430 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^ . _:genid4942 "PSI:MS"^^ . . . "The 6495A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^ . "MS"^^ . "MS:1002800"^^ . "6495A Triple Quadrupole LC/MS"^^ . _:genid4943 . _:genid4943 . _:genid4943 . _:genid4943 "The 6495A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^ . _:genid4943 "PSI:MS"^^ . . . "The 6495B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^ . "MS"^^ . "MS:1002801"^^ . "6495B Triple Quadrupole LC/MS"^^ . _:genid4944 . _:genid4944 . _:genid4944 . _:genid4944 "The 6495B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^ . _:genid4944 "PSI:MS"^^ . . . "The 7000A Quadrupole GC/MS system is a Agilent gas chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^ . "MS"^^ . "MS:1002802"^^ . "7000A Triple Quadrupole GC/MS"^^ . _:genid4945 . _:genid4945 . _:genid4945 . _:genid4945 "The 7000A Quadrupole GC/MS system is a Agilent gas chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^ . _:genid4945 "PSI:MS"^^ . . . "The 7000B Quadrupole GC/MS system is a Agilent gas chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^ . "MS"^^ . "MS:1002803"^^ . "7000B Triple Quadrupole GC/MS"^^ . _:genid4946 . _:genid4946 . _:genid4946 . _:genid4946 "The 7000B Quadrupole GC/MS system is a Agilent gas chromatography instrument combined with a Agilent triple quadrupole mass spectrometer."^^ . _:genid4946 "PSI:MS"^^ . . . "The 7800 Quadrupole ICP-MS system is a Agilent inductively couple plasma instrument combined with a Agilent quadrupole mass spectrometer."^^ . "MS"^^ . "MS:1002804"^^ . "7800 Quadrupole ICP-MS"^^ . _:genid4947 . _:genid4947 . _:genid4947 . _:genid4947 "The 7800 Quadrupole ICP-MS system is a Agilent inductively couple plasma instrument combined with a Agilent quadrupole mass spectrometer."^^ . _:genid4947 "PSI:MS"^^ . . . "The 8800 Quadrupole ICP-MS system is a Agilent inductively couple plasma instrument combined with a Agilent quadrupole mass spectrometer."^^ . "MS"^^ . "MS:1002805"^^ . "8800 Triple Quadrupole ICP-MS"^^ . _:genid4948 . _:genid4948 . _:genid4948 . _:genid4948 "The 8800 Quadrupole ICP-MS system is a Agilent inductively couple plasma instrument combined with a Agilent quadrupole mass spectrometer."^^ . _:genid4948 "PSI:MS"^^ . . . "Molecular entity having a net positive or negative electric charge."^^ . "MS"^^ . "MS:1002806"^^ . "ion"^^ . _:genid4949 . _:genid4949 . _:genid4949 . _:genid4949 "Molecular entity having a net positive or negative electric charge."^^ . _:genid4949 "PSI:MS"^^ . . . "Adduct ion with positive ionization."^^ . "MS"^^ . "MS:1002807"^^ . "positive mode adduct ion"^^ . _:genid4950 . _:genid4950 . _:genid4950 . _:genid4950 "Adduct ion with positive ionization."^^ . _:genid4950 "PSI:MS"^^ . . . "Adduct ion with negative ionization."^^ . "MS"^^ . "MS:1002808"^^ . "negative mode adduct ion"^^ . _:genid4951 . _:genid4951 . _:genid4951 . _:genid4951 "Adduct ion with negative ionization."^^ . _:genid4951 "PSI:MS"^^ . . _:genid4952 . _:genid4952 . _:genid4952 . _:genid4952 . "Nonphysical characteristic attributed to an adduct ion."^^ . "MS"^^ . "MS:1002809"^^ . "adduct ion attribute"^^ . _:genid4953 . _:genid4953 . _:genid4953 . _:genid4953 "Nonphysical characteristic attributed to an adduct ion."^^ . _:genid4953 "PSI:MS"^^ . . . _:genid4954 . _:genid4954 . _:genid4954 . _:genid4954 . "Theoretical m/z of the X component in the adduct M+X or M-X. This term was formerly called 'adduct ion mass', but it is not really a mass. It corresponds to the column mislabelled as 'mass' at https://fiehnlab.ucdavis.edu/staff/kind/Metabolomics/MS-Adduct-Calculator."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002810"^^ . "adduct ion X m/z"^^ . _:genid4955 . _:genid4955 . _:genid4955 . _:genid4955 "Theoretical m/z of the X component in the adduct M+X or M-X. This term was formerly called 'adduct ion mass', but it is not really a mass. It corresponds to the column mislabelled as 'mass' at https://fiehnlab.ucdavis.edu/staff/kind/Metabolomics/MS-Adduct-Calculator."^^ . _:genid4955 "PSI:MS"^^ . _:genid4956 . _:genid4956 . _:genid4956 . _:genid4956 "value-type:xsd:string"^^ . _:genid4956 "The allowed value-type for this CV term."^^ . . . _:genid4957 . _:genid4957 . _:genid4957 . _:genid4957 . "Isotope of the matrix molecule M of an adduct formation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002811"^^ . "adduct ion isotope"^^ . _:genid4958 . _:genid4958 . _:genid4958 . _:genid4958 "Isotope of the matrix molecule M of an adduct formation."^^ . _:genid4958 "PSI:MS"^^ . _:genid4959 . _:genid4959 . _:genid4959 . _:genid4959 "value-type:xsd:string"^^ . _:genid4959 "The allowed value-type for this CV term."^^ . . . "([[:digit:]{0,1}M([+][:digit:]{0,1}(H|K|(Na)|(Li)|(Cl)|(Br)|(NH3)|(NH4)|(CH3OH)|(IsoProp)|(DMSO)|(FA)|(Hac)|(TFA)|(NaCOOH)|(HCOOH)|(CF3COOH)|(ACN))){0,}([-][:digit:]{0,1}(H|(H2O)|(CH2)|(CH4)|(NH3)|(CO)|(CO2)|(COCH2)|(HCOOH)|(C2H4)|(C4H8)|(C3H2O3)|(C5H8O4)|(C6H10O4)|(C6H10O5)|(C6H8O6))){0,}][:digit:]{0,1}[+-])."^^ . "MS"^^ . "MS:1002812"^^ . "Regular expression for adduct ion formula"^^ . _:genid4960 . _:genid4960 . _:genid4960 . _:genid4960 "([[:digit:]{0,1}M([+][:digit:]{0,1}(H|K|(Na)|(Li)|(Cl)|(Br)|(NH3)|(NH4)|(CH3OH)|(IsoProp)|(DMSO)|(FA)|(Hac)|(TFA)|(NaCOOH)|(HCOOH)|(CF3COOH)|(ACN))){0,}([-][:digit:]{0,1}(H|(H2O)|(CH2)|(CH4)|(NH3)|(CO)|(CO2)|(COCH2)|(HCOOH)|(C2H4)|(C4H8)|(C3H2O3)|(C5H8O4)|(C6H10O4)|(C6H10O5)|(C6H8O6))){0,}][:digit:]{0,1}[+-])."^^ . _:genid4960 "PSI:PI"^^ . . . _:genid4961 . _:genid4961 . _:genid4961 . _:genid4961 . _:genid4962 . _:genid4962 . _:genid4962 . _:genid4962 . "Adduct formation formula of the form M+X or M-X, as constrained by the provided regular expression."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002813"^^ . "adduct ion formula"^^ . _:genid4963 . _:genid4963 . _:genid4963 . _:genid4963 "Adduct formation formula of the form M+X or M-X, as constrained by the provided regular expression."^^ . _:genid4963 "PSI:MS"^^ . _:genid4964 . _:genid4964 . _:genid4964 . _:genid4964 "value-type:xsd:string"^^ . _:genid4964 "The allowed value-type for this CV term."^^ . . . "An electrical mobility unit that equals the speed [cm/s] an ion reaches when pulled through a gas by a Voltage[V] over a certain distance [cm]."^^ . "Vs/cm^2"^^ . "MS"^^ . "MS:1002814"^^ . "volt-second per square centimeter"^^ . _:genid4965 . _:genid4965 . _:genid4965 . _:genid4965 "An electrical mobility unit that equals the speed [cm/s] an ion reaches when pulled through a gas by a Voltage[V] over a certain distance [cm]."^^ . _:genid4965 "PSI:PI"^^ . . . . _:genid4966 . _:genid4966 . _:genid4966 . _:genid4966 . _:genid4967 . _:genid4967 . _:genid4967 . _:genid4967 . "Ion mobility measurement for an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This might refer to the central value of a bin into which all ions within a narrow range of mobilities have been aggregated."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002815"^^ . "inverse reduced ion mobility"^^ . _:genid4968 . _:genid4968 . _:genid4968 . _:genid4968 "Ion mobility measurement for an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This might refer to the central value of a bin into which all ions within a narrow range of mobilities have been aggregated."^^ . _:genid4968 "PSI:MS"^^ . _:genid4969 . _:genid4969 . _:genid4969 . _:genid4969 "value-type:xsd:float"^^ . _:genid4969 "The allowed value-type for this CV term."^^ . . . _:genid4970 . _:genid4970 . _:genid4970 . _:genid4970 . _:genid4971 . _:genid4971 . _:genid4971 . _:genid4971 . _:genid4972 . _:genid4972 . _:genid4972 . _:genid4972 . "Array of population mean ion mobility values (K or K0) based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002816"^^ . "mean ion mobility array"^^ . _:genid4973 . _:genid4973 . _:genid4973 . _:genid4973 "Array of population mean ion mobility values (K or K0) based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . _:genid4973 "PSI:MS"^^ . _:genid4974 . _:genid4974 . _:genid4974 . _:genid4974 "value-type:xsd:float"^^ . _:genid4974 "The allowed value-type for this CV term."^^ . . . "Bruker TDF raw file format."^^ . "MS"^^ . "MS:1002817"^^ . "Bruker TDF format"^^ . _:genid4975 . _:genid4975 . _:genid4975 . _:genid4975 "Bruker TDF raw file format."^^ . _:genid4975 "PSI:MS"^^ . . . "Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger."^^ . "MS"^^ . "MS:1002818"^^ . "Bruker TDF nativeID format"^^ . _:genid4976 . _:genid4976 . _:genid4976 . _:genid4976 "Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger."^^ . _:genid4976 "PSI:MS"^^ . . . _:genid4977 . _:genid4977 . _:genid4977 . _:genid4977 . "Bruker TDF comma separated list of spectra that have been combined prior to searching or interpretation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002819"^^ . "Bruker TDF nativeID format, combined spectra"^^ . _:genid4978 . _:genid4978 . _:genid4978 . _:genid4978 "Bruker TDF comma separated list of spectra that have been combined prior to searching or interpretation."^^ . _:genid4978 "PSI:PI"^^ . _:genid4979 . _:genid4979 . _:genid4979 . _:genid4979 "value-type:xsd:string"^^ . _:genid4979 "The allowed value-type for this CV term."^^ . . . "Adduct formed by protonation of a matrix molecule M, i.e. the addition of a matrix molecule M plus a proton."^^ . "M + 1.007276"^^ . "MS"^^ . "MS:1002820"^^ . "M+H ion"^^ . _:genid4980 . _:genid4980 . _:genid4980 . _:genid4980 "Adduct formed by protonation of a matrix molecule M, i.e. the addition of a matrix molecule M plus a proton."^^ . _:genid4980 "PSI:MS"^^ . . . "Adduct formed by deprotonation of a matrix molecule M, i.e. the removal of a proton from a matrix molecule M."^^ . "M - 1.007276"^^ . "MS"^^ . "MS:1002821"^^ . "M-H ion"^^ . _:genid4981 . _:genid4981 . _:genid4981 . _:genid4981 "Adduct formed by deprotonation of a matrix molecule M, i.e. the removal of a proton from a matrix molecule M."^^ . _:genid4981 "PSI:MS"^^ . . . "File format developed by the OpenMS team."^^ . "MS"^^ . "MS:1002822"^^ . "OpenMS file format"^^ . _:genid4982 . _:genid4982 . _:genid4982 . _:genid4982 "File format developed by the OpenMS team."^^ . _:genid4982 "PMID:27575624"^^ . . . "OpenMS intermediate identification format."^^ . "MS"^^ . "MS:1002823"^^ . "idXML"^^ . _:genid4983 . _:genid4983 . _:genid4983 . _:genid4983 "OpenMS intermediate identification format."^^ . _:genid4983 "PSI:PI"^^ . . . "OpenMS feature file format."^^ . "MS"^^ . "MS:1002824"^^ . "featureXML"^^ . _:genid4984 . _:genid4984 . _:genid4984 . _:genid4984 "OpenMS feature file format."^^ . _:genid4984 "PSI:PI"^^ . . . "OpenMS consensus map format."^^ . "MS"^^ . "MS:1002825"^^ . "consensusXML"^^ . _:genid4985 . _:genid4985 . _:genid4985 . _:genid4985 "OpenMS consensus map format."^^ . _:genid4985 "PSI:PI"^^ . . . "MetaMorpheus search engine."^^ . "MS"^^ . "MS:1002826"^^ . "MetaMorpheus"^^ . _:genid4986 . _:genid4986 . _:genid4986 . _:genid4986 "MetaMorpheus search engine."^^ . _:genid4986 "https://github.com/smith-chem-wisc/MetaMorpheus"^^ . . . _:genid4987 . _:genid4987 . _:genid4987 . _:genid4987 . _:genid4988 . _:genid4988 . _:genid4988 . _:genid4988 . "MetaMorpheus score for PSMs."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002827"^^ . "MetaMorpheus:score"^^ . _:genid4989 . _:genid4989 . _:genid4989 . _:genid4989 "MetaMorpheus score for PSMs."^^ . _:genid4989 "PSI:PI"^^ . _:genid4990 . _:genid4990 . _:genid4990 . _:genid4990 "value-type:xsd:double"^^ . _:genid4990 "The allowed value-type for this CV term."^^ . . . _:genid4991 . _:genid4991 . _:genid4991 . _:genid4991 . _:genid4992 . _:genid4992 . _:genid4992 . _:genid4992 . "MetaMorpheus score for protein groups."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002828"^^ . "MetaMorpheus:protein score"^^ . _:genid4993 . _:genid4993 . _:genid4993 . _:genid4993 "MetaMorpheus score for protein groups."^^ . _:genid4993 "PSI:PI"^^ . _:genid4994 . _:genid4994 . _:genid4994 . _:genid4994 "value-type:xsd:double"^^ . _:genid4994 "The allowed value-type for this CV term."^^ . . . _:genid4995 . _:genid4995 . _:genid4995 . _:genid4995 . "Feature intensity produced by XCMS findPeaks() from integrated peak intensity."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002829"^^ . "XCMS:into"^^ . _:genid4996 . _:genid4996 . _:genid4996 . _:genid4996 "Feature intensity produced by XCMS findPeaks() from integrated peak intensity."^^ . _:genid4996 "PSI:PI"^^ . _:genid4997 . _:genid4997 . _:genid4997 . _:genid4997 "value-type:xsd:double"^^ . _:genid4997 "The allowed value-type for this CV term."^^ . . . _:genid4998 . _:genid4998 . _:genid4998 . _:genid4998 . "Feature intensity produced by XCMS findPeaks() from baseline corrected integrated peak intensity."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002830"^^ . "XCMS:intf"^^ . _:genid4999 . _:genid4999 . _:genid4999 . _:genid4999 "Feature intensity produced by XCMS findPeaks() from baseline corrected integrated peak intensity."^^ . _:genid4999 "PSI:PI"^^ . _:genid5000 . _:genid5000 . _:genid5000 . _:genid5000 "value-type:xsd:double"^^ . _:genid5000 "The allowed value-type for this CV term."^^ . . . _:genid5001 . _:genid5001 . _:genid5001 . _:genid5001 . "Feature intensity produced by XCMS findPeaks() from maximum peak intensity."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002831"^^ . "XCMS:maxo"^^ . _:genid5002 . _:genid5002 . _:genid5002 . _:genid5002 "Feature intensity produced by XCMS findPeaks() from maximum peak intensity."^^ . _:genid5002 "PSI:PI"^^ . _:genid5003 . _:genid5003 . _:genid5003 . _:genid5003 "value-type:xsd:double"^^ . _:genid5003 "The allowed value-type for this CV term."^^ . . . _:genid5004 . _:genid5004 . _:genid5004 . _:genid5004 . "Feature intensity produced by XCMS findPeaks() from feature area that is not normalized by the scan rate."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002832"^^ . "XCMS:area"^^ . _:genid5005 . _:genid5005 . _:genid5005 . _:genid5005 "Feature intensity produced by XCMS findPeaks() from feature area that is not normalized by the scan rate."^^ . _:genid5005 "PSI:PI"^^ . _:genid5006 . _:genid5006 . _:genid5006 . _:genid5006 "value-type:xsd:double"^^ . _:genid5006 "The allowed value-type for this CV term."^^ . . . "Polarities of the scans of a run are alternating, i.e. both positive and negative mode scans are acquired."^^ . "MS"^^ . "MS:1002833"^^ . "alternating polarity mode"^^ . _:genid5007 . _:genid5007 . _:genid5007 . _:genid5007 "Polarities of the scans of a run are alternating, i.e. both positive and negative mode scans are acquired."^^ . _:genid5007 "PSI:PI"^^ . . . _:genid5008 . _:genid5008 . _:genid5008 . _:genid5008 . "The Delta Score reported by Proteome Discoverer version 2."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002834"^^ . "ProteomeDiscoverer:Delta Score"^^ . _:genid5009 . _:genid5009 . _:genid5009 . _:genid5009 "The Delta Score reported by Proteome Discoverer version 2."^^ . _:genid5009 "PSI:PI"^^ . _:genid5010 . _:genid5010 . _:genid5010 . _:genid5010 "value-type:xsd:float"^^ . _:genid5010 "The allowed value-type for this CV term."^^ . . . "Thermo Fisher Scientific LTQ Orbitrap Classic."^^ . "MS"^^ . "MS:1002835"^^ . "LTQ Orbitrap Classic"^^ . _:genid5011 . _:genid5011 . _:genid5011 . _:genid5011 "Thermo Fisher Scientific LTQ Orbitrap Classic."^^ . _:genid5011 "PSI:MS"^^ . . . _:genid5012 . _:genid5012 . _:genid5012 . _:genid5012 . "Dataset identifier issued by the iProX repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002836"^^ . "iProX dataset identifier"^^ . _:genid5013 . _:genid5013 . _:genid5013 . _:genid5013 "Dataset identifier issued by the iProX repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . _:genid5013 "PSI:PI"^^ . _:genid5014 . _:genid5014 . _:genid5014 . _:genid5014 "value-type:xsd:string"^^ . _:genid5014 "The allowed value-type for this CV term."^^ . . . _:genid5015 . _:genid5015 . _:genid5015 . _:genid5015 . "URI that allows the access to one dataset in the iProX repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . "value-type:xsd:anyURI"^^ . "MS"^^ . "MS:1002837"^^ . "iProX dataset URI"^^ . _:genid5016 . _:genid5016 . _:genid5016 . _:genid5016 "URI that allows the access to one dataset in the iProX repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . _:genid5016 "PSI:PI"^^ . _:genid5017 . _:genid5017 . _:genid5017 . _:genid5017 "value-type:xsd:anyURI"^^ . _:genid5017 "The allowed value-type for this CV term."^^ . . . "mzMLb file format, mzML encapsulated within HDF5."^^ . "MS"^^ . "MS:1002838"^^ . "mzMLb format"^^ . _:genid5018 . _:genid5018 . _:genid5018 . _:genid5018 "mzMLb file format, mzML encapsulated within HDF5."^^ . _:genid5018 "PSI:PI"^^ . _:genid5018 "https://github.com/biospi/mzmlb"^^ . . . "Conversion of a file format to Proteomics Standards Initiative mzMLb file format."^^ . "MS"^^ . "MS:1002839"^^ . "Conversion to mzMLb"^^ . _:genid5019 . _:genid5019 . _:genid5019 . _:genid5019 "Conversion of a file format to Proteomics Standards Initiative mzMLb file format."^^ . _:genid5019 "PSI:PI"^^ . . _:genid5020 . _:genid5020 . _:genid5020 . _:genid5020 . "Data belonging to an external reference."^^ . "MS"^^ . "MS:1002840"^^ . "external reference data"^^ . _:genid5021 . _:genid5021 . _:genid5021 . _:genid5021 "Data belonging to an external reference."^^ . _:genid5021 "PSI:MS"^^ . . . _:genid5022 . _:genid5022 . _:genid5022 . _:genid5022 . "The HDF5 dataset location containing the binary data, relative to the dataset containing the mzML. Also indicates that there is no data in the section of the BinaryDataArray."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002841"^^ . "external HDF5 dataset"^^ . _:genid5023 . _:genid5023 . _:genid5023 . _:genid5023 "The HDF5 dataset location containing the binary data, relative to the dataset containing the mzML. Also indicates that there is no data in the section of the BinaryDataArray."^^ . _:genid5023 "PSI:PI"^^ . _:genid5024 . _:genid5024 . _:genid5024 . _:genid5024 "value-type:xsd:string"^^ . _:genid5024 "The allowed value-type for this CV term."^^ . . . _:genid5025 . _:genid5025 . _:genid5025 . _:genid5025 . _:genid5026 . _:genid5026 . _:genid5026 . _:genid5026 . "The position in the external data where the array begins."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1002842"^^ . "external offset"^^ . _:genid5027 . _:genid5027 . _:genid5027 . _:genid5027 "The position in the external data where the array begins."^^ . _:genid5027 "PSI:PI"^^ . _:genid5028 . _:genid5028 . _:genid5028 . _:genid5028 "value-type:xsd:nonNegativeInteger"^^ . _:genid5028 "The allowed value-type for this CV term."^^ . . . _:genid5029 . _:genid5029 . _:genid5029 . _:genid5029 . _:genid5030 . _:genid5030 . _:genid5030 . _:genid5030 . "Describes how many fields an array contains."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1002843"^^ . "external array length"^^ . _:genid5031 . _:genid5031 . _:genid5031 . _:genid5031 "Describes how many fields an array contains."^^ . _:genid5031 "PSI:PI"^^ . _:genid5032 . _:genid5032 . _:genid5032 . _:genid5032 "value-type:xsd:nonNegativeInteger"^^ . _:genid5032 "The allowed value-type for this CV term."^^ . . . "Root node for terms relating to the description of an Experiment in relation to the PRIDE-XML element ExperimentCollection/Experiment/additional/cvParam."^^ . "MS"^^ . "MS:1002844"^^ . "Experiment additional parameter"^^ . _:genid5033 . _:genid5033 . _:genid5033 . _:genid5033 "Root node for terms relating to the description of an Experiment in relation to the PRIDE-XML element ExperimentCollection/Experiment/additional/cvParam."^^ . _:genid5033 "PSI:PI"^^ . . . _:genid5034 . _:genid5034 . _:genid5034 . _:genid5034 . "URI of one external file associated to the PRIDE experiment (maybe through a PX submission)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002845"^^ . "Associated file URI"^^ . _:genid5035 . _:genid5035 . _:genid5035 . _:genid5035 "URI of one external file associated to the PRIDE experiment (maybe through a PX submission)."^^ . _:genid5035 "PSI:PI"^^ . _:genid5036 . _:genid5036 . _:genid5036 . _:genid5036 "value-type:xsd:string"^^ . _:genid5036 "The allowed value-type for this CV term."^^ . . . _:genid5037 . _:genid5037 . _:genid5037 . _:genid5037 . "URI of one raw data file associated to the PRIDE experiment (maybe through a PX submission)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002846"^^ . "Associated raw file URI"^^ . _:genid5038 . _:genid5038 . _:genid5038 . _:genid5038 "URI of one raw data file associated to the PRIDE experiment (maybe through a PX submission)."^^ . _:genid5038 "PSI:PI"^^ . _:genid5039 . _:genid5039 . _:genid5039 . _:genid5039 "value-type:xsd:string"^^ . _:genid5039 "The allowed value-type for this CV term."^^ . . . _:genid5040 . _:genid5040 . _:genid5040 . _:genid5040 . "URI associated to one PX submission in ProteomeCentral."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002847"^^ . "ProteomeCentral dataset URI"^^ . _:genid5041 . _:genid5041 . _:genid5041 . _:genid5041 "URI associated to one PX submission in ProteomeCentral."^^ . _:genid5041 "PSI:PI"^^ . _:genid5042 . _:genid5042 . _:genid5042 . _:genid5042 "value-type:xsd:string"^^ . _:genid5042 "The allowed value-type for this CV term."^^ . . . _:genid5043 . _:genid5043 . _:genid5043 . _:genid5043 . "URI of one file labeled as 'Result', associated to one PX submission."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002848"^^ . "Result file URI"^^ . _:genid5044 . _:genid5044 . _:genid5044 . _:genid5044 "URI of one file labeled as 'Result', associated to one PX submission."^^ . _:genid5044 "PSI:PI"^^ . _:genid5045 . _:genid5045 . _:genid5045 . _:genid5045 "value-type:xsd:string"^^ . _:genid5045 "The allowed value-type for this CV term."^^ . . . _:genid5046 . _:genid5046 . _:genid5046 . _:genid5046 . "URI of one search engine output file associated to one PX submission."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002849"^^ . "Search engine output file URI"^^ . _:genid5047 . _:genid5047 . _:genid5047 . _:genid5047 "URI of one search engine output file associated to one PX submission."^^ . _:genid5047 "PSI:PI"^^ . _:genid5048 . _:genid5048 . _:genid5048 . _:genid5048 "value-type:xsd:string"^^ . _:genid5048 "The allowed value-type for this CV term."^^ . . . _:genid5049 . _:genid5049 . _:genid5049 . _:genid5049 . "URI of one of one search engine output file associated to one PX submission."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002850"^^ . "Peak list file URI"^^ . _:genid5050 . _:genid5050 . _:genid5050 . _:genid5050 "URI of one of one search engine output file associated to one PX submission."^^ . _:genid5050 "PSI:PI"^^ . _:genid5051 . _:genid5051 . _:genid5051 . _:genid5051 "value-type:xsd:string"^^ . _:genid5051 "The allowed value-type for this CV term."^^ . . . _:genid5052 . _:genid5052 . _:genid5052 . _:genid5052 . "URI of one file labeled as 'Other', associated to one PX submission."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002851"^^ . "Other type file URI"^^ . _:genid5053 . _:genid5053 . _:genid5053 . _:genid5053 "URI of one file labeled as 'Other', associated to one PX submission."^^ . _:genid5053 "PSI:PI"^^ . _:genid5054 . _:genid5054 . _:genid5054 . _:genid5054 "value-type:xsd:string"^^ . _:genid5054 "The allowed value-type for this CV term."^^ . . . _:genid5055 . _:genid5055 . _:genid5055 . _:genid5055 . "FTP location of one entire PX data set."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002852"^^ . "Dataset FTP location"^^ . _:genid5056 . _:genid5056 . _:genid5056 . _:genid5056 "FTP location of one entire PX data set."^^ . _:genid5056 "PSI:PI"^^ . _:genid5057 . _:genid5057 . _:genid5057 . _:genid5057 "value-type:xsd:string"^^ . _:genid5057 "The allowed value-type for this CV term."^^ . . . "A dataset which does not have an associated published manuscript."^^ . "MS"^^ . "MS:1002853"^^ . "Dataset with no associated published manuscript"^^ . _:genid5058 . _:genid5058 . _:genid5058 . _:genid5058 "A dataset which does not have an associated published manuscript."^^ . _:genid5058 "PSI:PI"^^ . . . "Dataset has been peer-reviewed somehow."^^ . "MS"^^ . "MS:1002854"^^ . "Peer-reviewed dataset"^^ . _:genid5059 . _:genid5059 . _:genid5059 . _:genid5059 "Dataset has been peer-reviewed somehow."^^ . _:genid5059 "PSI:PI"^^ . . . "Dataset that has not been peer-reviewed by any means."^^ . "MS"^^ . "MS:1002855"^^ . "Non peer-reviewed dataset"^^ . _:genid5060 . _:genid5060 . _:genid5060 . _:genid5060 "Dataset that has not been peer-reviewed by any means."^^ . _:genid5060 "PSI:PI"^^ . . . "Dataset for which the identifications and/or spectra/traces are in formats that can be parsed by the hosting data repository such that internal references between identifications and spectra/traces are preserved and browsable at the repository. This is usually called a complete submission."^^ . "MS"^^ . "MS:1002856"^^ . "Supported dataset by repository"^^ . _:genid5061 . _:genid5061 . _:genid5061 . _:genid5061 "Dataset for which the identifications and/or spectra/traces are in formats that can be parsed by the hosting data repository such that internal references between identifications and spectra/traces are preserved and browsable at the repository. This is usually called a complete submission."^^ . _:genid5061 "PSI:PI"^^ . . . "Dataset for which the identifications and/or spectra/traces are in formats that cannot be parsed by the hosting data repository and thus internal references between identifications and spectra/traces are not browsable at the repository. This is usually called a partial submission."^^ . "MS"^^ . "MS:1002857"^^ . "Unsupported dataset by repository"^^ . _:genid5062 . _:genid5062 . _:genid5062 . _:genid5062 "Dataset for which the identifications and/or spectra/traces are in formats that cannot be parsed by the hosting data repository and thus internal references between identifications and spectra/traces are not browsable at the repository. This is usually called a partial submission."^^ . _:genid5062 "PSI:PI"^^ . . . "A dataset which has an associated manuscript pending for publication."^^ . "MS"^^ . "MS:1002858"^^ . "Dataset with its publication pending"^^ . _:genid5063 . _:genid5063 . _:genid5063 . _:genid5063 "A dataset which has an associated manuscript pending for publication."^^ . _:genid5063 "PSI:PI"^^ . . . _:genid5064 . _:genid5064 . _:genid5064 . _:genid5064 . "Additional URI of one raw data file associated to the PRIDE experiment (maybe through a PX submission). The URI is provided via an additional resource to PRIDE."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002859"^^ . "Additional associated raw file URI"^^ . _:genid5065 . _:genid5065 . _:genid5065 . _:genid5065 "Additional URI of one raw data file associated to the PRIDE experiment (maybe through a PX submission). The URI is provided via an additional resource to PRIDE."^^ . _:genid5065 "PSI:PI"^^ . _:genid5066 . _:genid5066 . _:genid5066 . _:genid5066 "value-type:xsd:string"^^ . _:genid5066 "The allowed value-type for this CV term."^^ . . . _:genid5067 . _:genid5067 . _:genid5067 . _:genid5067 . "URI of one gel image file associated to one PX submission."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002860"^^ . "Gel image file URI"^^ . _:genid5068 . _:genid5068 . _:genid5068 . _:genid5068 "URI of one gel image file associated to one PX submission."^^ . _:genid5068 "PSI:PI"^^ . _:genid5069 . _:genid5069 . _:genid5069 . _:genid5069 "value-type:xsd:string"^^ . _:genid5069 "The allowed value-type for this CV term."^^ . . . _:genid5070 . _:genid5070 . _:genid5070 . _:genid5070 . "All the raw files included in the original dataset (or group of original datasets) have been reanalysed."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002861"^^ . "Reprocessed complete dataset"^^ . _:genid5071 . _:genid5071 . _:genid5071 . _:genid5071 "All the raw files included in the original dataset (or group of original datasets) have been reanalysed."^^ . _:genid5071 "PSI:PI"^^ . _:genid5072 . _:genid5072 . _:genid5072 . _:genid5072 "value-type:xsd:string"^^ . _:genid5072 "The allowed value-type for this CV term."^^ . . . _:genid5073 . _:genid5073 . _:genid5073 . _:genid5073 . "A subset of the raw files included in the original dataset (or group of original datasets) has been reanalysed."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002862"^^ . "Reprocessed subset dataset"^^ . _:genid5074 . _:genid5074 . _:genid5074 . _:genid5074 "A subset of the raw files included in the original dataset (or group of original datasets) has been reanalysed."^^ . _:genid5074 "PSI:PI"^^ . _:genid5075 . _:genid5075 . _:genid5075 . _:genid5075 "value-type:xsd:string"^^ . _:genid5075 "The allowed value-type for this CV term."^^ . . . "One dataset is a reanalysis of previously published data."^^ . "MS"^^ . "MS:1002863"^^ . "Data derived from previous dataset"^^ . _:genid5076 . _:genid5076 . _:genid5076 . _:genid5076 "One dataset is a reanalysis of previously published data."^^ . _:genid5076 "PSI:PI"^^ . . . "No post-translational-modifications are been included in the identified peptides of one dataset."^^ . "MS"^^ . "MS:1002864"^^ . "No PTMs are included in the dataset"^^ . _:genid5077 . _:genid5077 . _:genid5077 . _:genid5077 "No post-translational-modifications are been included in the identified peptides of one dataset."^^ . _:genid5077 "PSI:PI"^^ . . . "A dataset has one associated manuscript, which has been accepted but no PubMedID is available yet."^^ . "MS"^^ . "MS:1002865"^^ . "Accepted manuscript"^^ . _:genid5078 . _:genid5078 . _:genid5078 . _:genid5078 "A dataset has one associated manuscript, which has been accepted but no PubMedID is available yet."^^ . _:genid5078 "PSI:PI"^^ . . . _:genid5079 . _:genid5079 . _:genid5079 . _:genid5079 . "Literature reference associated with one dataset (including the authors, title, year and journal details). The value field can be used for the PubMedID, or to specify if one manuscript is just submitted or accepted, but it does not have a PubMedID yet."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002866"^^ . "Reference"^^ . _:genid5080 . _:genid5080 . _:genid5080 . _:genid5080 "Literature reference associated with one dataset (including the authors, title, year and journal details). The value field can be used for the PubMedID, or to specify if one manuscript is just submitted or accepted, but it does not have a PubMedID yet."^^ . _:genid5080 "PSI:PI"^^ . _:genid5081 . _:genid5081 . _:genid5081 . _:genid5081 "value-type:xsd:string"^^ . _:genid5081 "The allowed value-type for this CV term."^^ . . . "This means that the experimental information available has been improved, for instance precursor charges were added."^^ . "MS"^^ . "MS:1002867"^^ . "Experimental information has been refined since this experiment was originally made publicly available"^^ . _:genid5082 . _:genid5082 . _:genid5082 . _:genid5082 "This means that the experimental information available has been improved, for instance precursor charges were added."^^ . _:genid5082 "PSI:PI"^^ . . . "One dataset is not a reanalysis of previously published data."^^ . "MS"^^ . "MS:1002868"^^ . "Original data"^^ . _:genid5083 . _:genid5083 . _:genid5083 . _:genid5083 "One dataset is not a reanalysis of previously published data."^^ . _:genid5083 "PSI:PI"^^ . . . . "Bioconductor package mzR for reading and writing mass spectrometry data files."^^ . "MS"^^ . "MS:1002869"^^ . "mzR"^^ . _:genid5084 . _:genid5084 . _:genid5084 . _:genid5084 "Bioconductor package mzR for reading and writing mass spectrometry data files."^^ . _:genid5084 "PSI:PI"^^ . . . . "Bioconductor package MSnbase provides infrastructure for manipulation, processing and visualization of mass spectrometry and proteomics data, ranging from raw to quantitative and annotated data."^^ . "MS"^^ . "MS:1002870"^^ . "MSnbase"^^ . _:genid5085 . _:genid5085 . _:genid5085 . _:genid5085 "Bioconductor package MSnbase provides infrastructure for manipulation, processing and visualization of mass spectrometry and proteomics data, ranging from raw to quantitative and annotated data."^^ . _:genid5085 "PMID:22113085"^^ . . . . "Bioconductor package CAMERA for annotation of peak lists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments."^^ . "MS"^^ . "MS:1002871"^^ . "CAMERA"^^ . _:genid5086 . _:genid5086 . _:genid5086 . _:genid5086 "Bioconductor package CAMERA for annotation of peak lists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments."^^ . _:genid5086 "PMID:22111785"^^ . . . _:genid5087 . _:genid5087 . _:genid5087 . _:genid5087 . "Dataset identifier issued by the Panorama Public repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002872"^^ . "Panorama Public dataset identifier"^^ . _:genid5088 . _:genid5088 . _:genid5088 . _:genid5088 "Dataset identifier issued by the Panorama Public repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . _:genid5088 "PSI:PI"^^ . _:genid5089 . _:genid5089 . _:genid5089 . _:genid5089 "value-type:xsd:string"^^ . _:genid5089 "The allowed value-type for this CV term."^^ . . . _:genid5090 . _:genid5090 . _:genid5090 . _:genid5090 . "URI that allows the access to one dataset in the Panorama Public repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . "value-type:xsd:anyURI"^^ . "MS"^^ . "MS:1002873"^^ . "Panorama Public dataset URI"^^ . _:genid5091 . _:genid5091 . _:genid5091 . _:genid5091 "URI that allows the access to one dataset in the Panorama Public repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication."^^ . _:genid5091 "PSI:PI"^^ . _:genid5092 . _:genid5092 . _:genid5092 . _:genid5092 "value-type:xsd:anyURI"^^ . _:genid5092 "The allowed value-type for this CV term."^^ . . . "Thermo Scientific TSQ Altis Triple Quadrupole MS."^^ . "MS"^^ . "MS:1002874"^^ . "TSQ Altis"^^ . _:genid5093 . _:genid5093 . _:genid5093 . _:genid5093 "Thermo Scientific TSQ Altis Triple Quadrupole MS."^^ . _:genid5093 "PSI:PI"^^ . . . "Thermo Scientific TSQ Quantis Triple Quadrupole MS."^^ . "MS"^^ . "MS:1002875"^^ . "TSQ Quantis"^^ . _:genid5094 . _:genid5094 . _:genid5094 . _:genid5094 "Thermo Scientific TSQ Quantis Triple Quadrupole MS."^^ . _:genid5094 "PSI:PI"^^ . . . "Thermo Scientific TSQ 9000 Triple Quadrupole MS."^^ . "MS"^^ . "MS:1002876"^^ . "TSQ 9000"^^ . _:genid5095 . _:genid5095 . _:genid5095 . _:genid5095 "Thermo Scientific TSQ 9000 Triple Quadrupole MS."^^ . _:genid5095 "PSI:PI"^^ . . . "Thermo Scientific Q Exactive HF-X Hybrid Quadrupole Orbitrap MS."^^ . "MS"^^ . "MS:1002877"^^ . "Q Exactive HF-X"^^ . _:genid5096 . _:genid5096 . _:genid5096 . _:genid5096 "Thermo Scientific Q Exactive HF-X Hybrid Quadrupole Orbitrap MS."^^ . _:genid5096 "PSI:PI"^^ . . . "Software for the analysis of small molecules."^^ . "MS"^^ . "MS:1002878"^^ . "small molecule analysis software"^^ . _:genid5097 . _:genid5097 . _:genid5097 . _:genid5097 "Software for the analysis of small molecules."^^ . _:genid5097 "PSI:PI"^^ . . . "Metabolomics analysis software for LC-MS data from Nonlinear Dynamics."^^ . "MS"^^ . "MS:1002879"^^ . "Progenesis QI"^^ . _:genid5098 . _:genid5098 . _:genid5098 . _:genid5098 "Metabolomics analysis software for LC-MS data from Nonlinear Dynamics."^^ . _:genid5098 "PSI:PI"^^ . . . "Metabolomics analysis software from Thermo Fisher Scientific."^^ . "MS"^^ . "MS:1002880"^^ . "Compound Discoverer"^^ . _:genid5099 . _:genid5099 . _:genid5099 . _:genid5099 "Metabolomics analysis software from Thermo Fisher Scientific."^^ . _:genid5099 "PSI:PI"^^ . . . "Metabolite identification tool MyCompoundID."^^ . "MS"^^ . "MS:1002881"^^ . "MyCompoundID"^^ . _:genid5100 . _:genid5100 . _:genid5100 . _:genid5100 "Metabolite identification tool MyCompoundID."^^ . _:genid5100 "PMID:23373753"^^ . _:genid5100 "PSI:PI"^^ . . . "Function used to calculate the study variable quantification value."^^ . "MS"^^ . "MS:1002882"^^ . "study variable average function"^^ . _:genid5101 . _:genid5101 . _:genid5101 . _:genid5101 "Function used to calculate the study variable quantification value."^^ . _:genid5101 "PSI:PI"^^ . . . "Median function."^^ . "MS"^^ . "MS:1002883"^^ . "median"^^ . _:genid5102 . _:genid5102 . _:genid5102 . _:genid5102 "Median function."^^ . _:genid5102 "PSI:PI"^^ . . . "Function used to calculate the study variable quantification variation value."^^ . "MS"^^ . "MS:1002884"^^ . "study variable variation function"^^ . _:genid5103 . _:genid5103 . _:genid5103 . _:genid5103 "Function used to calculate the study variable quantification variation value."^^ . _:genid5103 "PSI:PI"^^ . . . "Standard error function."^^ . "MS"^^ . "MS:1002885"^^ . "standard error"^^ . _:genid5104 . _:genid5104 . _:genid5104 . _:genid5104 "Standard error function."^^ . _:genid5104 "PSI:PI"^^ . . . "The value reported in a small molecule quantification."^^ . "MS"^^ . "MS:1002886"^^ . "small molecule quantification datatype"^^ . _:genid5105 . _:genid5105 . _:genid5105 . _:genid5105 "The value reported in a small molecule quantification."^^ . _:genid5105 "PSI:PI"^^ . . . _:genid5106 . _:genid5106 . _:genid5106 . _:genid5106 . "The normalised abundance produced by Progenesis QI LC-MS."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002887"^^ . "Progenesis QI normalised abundance"^^ . _:genid5107 . _:genid5107 . _:genid5107 . _:genid5107 "The normalised abundance produced by Progenesis QI LC-MS."^^ . _:genid5107 "PSI:PI"^^ . _:genid5108 . _:genid5108 . _:genid5108 . _:genid5108 "value-type:xsd:double"^^ . _:genid5108 "The allowed value-type for this CV term."^^ . . . "The confidence score produced by a small molecule analysis software."^^ . "MS"^^ . "MS:1002888"^^ . "small molecule confidence measure"^^ . _:genid5109 . _:genid5109 . _:genid5109 . _:genid5109 "The confidence score produced by a small molecule analysis software."^^ . _:genid5109 "PSI:PI"^^ . . . _:genid5110 . _:genid5110 . _:genid5110 . _:genid5110 . "The confidence score produced by Progenesis QI."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002889"^^ . "Progenesis MetaScope score"^^ . _:genid5111 . _:genid5111 . _:genid5111 . _:genid5111 "The confidence score produced by Progenesis QI."^^ . _:genid5111 "PSI:PI"^^ . _:genid5112 . _:genid5112 . _:genid5112 . _:genid5112 "value-type:xsd:float"^^ . _:genid5112 "The allowed value-type for this CV term."^^ . . . _:genid5113 . _:genid5113 . _:genid5113 . _:genid5113 . "The fragmentation confidence score."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002890"^^ . "fragmentation score"^^ . _:genid5114 . _:genid5114 . _:genid5114 . _:genid5114 "The fragmentation confidence score."^^ . _:genid5114 "PSI:PI"^^ . _:genid5115 . _:genid5115 . _:genid5115 . _:genid5115 "value-type:xsd:float"^^ . _:genid5115 "The allowed value-type for this CV term."^^ . . . _:genid5116 . _:genid5116 . _:genid5116 . _:genid5116 . "The isotopic fit confidence score."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1002891"^^ . "isotopic fit score"^^ . _:genid5117 . _:genid5117 . _:genid5117 . _:genid5117 "The isotopic fit confidence score."^^ . _:genid5117 "PSI:PI"^^ . _:genid5118 . _:genid5118 . _:genid5118 . _:genid5118 "value-type:xsd:float"^^ . _:genid5118 "The allowed value-type for this CV term."^^ . . . . "An attribute describing ion mobility searches."^^ . "MS"^^ . "MS:1002892"^^ . "ion mobility attribute"^^ . _:genid5119 . _:genid5119 . _:genid5119 . _:genid5119 "An attribute describing ion mobility searches."^^ . _:genid5119 "PSI:PI"^^ . . . "Abstract array of ion mobility data values. A more specific child term concept should be specified in data files to make precise the nature of the data being provided."^^ . "MS"^^ . "MS:1002893"^^ . "ion mobility array"^^ . _:genid5120 . _:genid5120 . _:genid5120 . _:genid5120 "Abstract array of ion mobility data values. A more specific child term concept should be specified in data files to make precise the nature of the data being provided."^^ . _:genid5120 "PSI:PI"^^ . . . _:genid5121 . _:genid5121 . _:genid5121 . _:genid5121 . "Unique chemical structure identifier for chemical compounds."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002894"^^ . "InChIKey"^^ . _:genid5122 . _:genid5122 . _:genid5122 . _:genid5122 "Unique chemical structure identifier for chemical compounds."^^ . _:genid5122 "PMID:273343401"^^ . _:genid5123 . _:genid5123 . _:genid5123 . _:genid5123 "value-type:xsd:string"^^ . _:genid5123 "The allowed value-type for this CV term."^^ . . . "Compound identification information."^^ . "MS"^^ . "MS:1002895"^^ . "small molecule identification attribute"^^ . _:genid5124 . _:genid5124 . _:genid5124 . _:genid5124 "Compound identification information."^^ . _:genid5124 "PSI:PI"^^ . . . _:genid5125 . _:genid5125 . _:genid5125 . _:genid5125 . "Confidence level for annotation of identified compounds as defined by the Metabolomics Standards Initiative (MSI). The value slot can have the values 'Level 0' until 'Level 4'."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002896"^^ . "compound identification confidence level"^^ . _:genid5126 . _:genid5126 . _:genid5126 . _:genid5126 "Confidence level for annotation of identified compounds as defined by the Metabolomics Standards Initiative (MSI). The value slot can have the values 'Level 0' until 'Level 4'."^^ . _:genid5126 "PMID:29748461"^^ . _:genid5127 . _:genid5127 . _:genid5127 . _:genid5127 "value-type:xsd:string"^^ . _:genid5127 "The allowed value-type for this CV term."^^ . . . _:genid5128 . _:genid5128 . _:genid5128 . _:genid5128 . "OBSOLETE Identifies a peak when no de-isotoping has been performed. The value slot reports the isotopomer peak, e.g. '2H', '13C', '15N', '18O', '31P'."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002897"^^ . "This term was obsoleted because it was replaced by the more exact terms MS:1002956 'isotopic ion MS peak', MS:1002957 'isotopomer MS peak' and MS:1002958 'isotopologue MS peak' instead."^^ . "isotopomer peak"^^ . "true"^^ . _:genid5129 . _:genid5129 . _:genid5129 . _:genid5129 "OBSOLETE Identifies a peak when no de-isotoping has been performed. The value slot reports the isotopomer peak, e.g. '2H', '13C', '15N', '18O', '31P'."^^ . _:genid5129 "PSI:PI"^^ . _:genid5130 . _:genid5130 . _:genid5130 . _:genid5130 "value-type:xsd:string"^^ . _:genid5130 "The allowed value-type for this CV term."^^ . . . "Native format defined by scan=xsd:nonNegativeInteger."^^ . "MS"^^ . "MS:1002898"^^ . "Shimadzu Biotech QTOF nativeID format"^^ . _:genid5131 . _:genid5131 . _:genid5131 . _:genid5131 "Native format defined by scan=xsd:nonNegativeInteger."^^ . _:genid5131 "PSI:PI"^^ . . . "msalign file format."^^ . "MS"^^ . "MS:1002899"^^ . "msalign format"^^ . _:genid5132 . _:genid5132 . _:genid5132 . _:genid5132 "msalign file format."^^ . _:genid5132 "PSI:MS"^^ . . . "TopFD feature file format."^^ . "MS"^^ . "MS:1002900"^^ . "feature format"^^ . _:genid5133 . _:genid5133 . _:genid5133 . _:genid5133 "TopFD feature file format."^^ . _:genid5133 "PSI:MS"^^ . . . "TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and characterization."^^ . "MS"^^ . "MS:1002901"^^ . "TopPIC"^^ . _:genid5134 . _:genid5134 . _:genid5134 . _:genid5134 "TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and characterization."^^ . _:genid5134 "PMID:27423895"^^ . _:genid5134 "http://proteomics.informatics.iupui.edu/software/toppic/index.html"^^ . . . "Top-down mass spectral feature detection."^^ . "MS"^^ . "MS:1002902"^^ . "TopFD"^^ . _:genid5135 . _:genid5135 . _:genid5135 . _:genid5135 "Top-down mass spectral feature detection."^^ . _:genid5135 "http://proteomics.informatics.iupui.edu/software/toppic/index.html"^^ . . . "A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra."^^ . "MS"^^ . "MS:1002903"^^ . "TopMG"^^ . _:genid5136 . _:genid5136 . _:genid5136 . _:genid5136 "A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra."^^ . _:genid5136 "PMID:28453668"^^ . _:genid5136 "http://proteomics.informatics.iupui.edu/software/topmg/index.html"^^ . . . "Proteoform level information."^^ . "MS"^^ . "MS:1002904"^^ . "proteoform-level identification attribute"^^ . _:genid5137 . _:genid5137 . _:genid5137 . _:genid5137 "Proteoform level information."^^ . _:genid5137 "PSI:PI"^^ . . . "Identification confidence metric for a proteoform."^^ . "MS"^^ . "MS:1002905"^^ . "proteoform-level identification statistic"^^ . _:genid5138 . _:genid5138 . _:genid5138 . _:genid5138 "Identification confidence metric for a proteoform."^^ . _:genid5138 "PSI:PI"^^ . . . "Search engine specific proteoform scores."^^ . "MS"^^ . "MS:1002906"^^ . "search engine specific score for proteoforms"^^ . _:genid5139 . _:genid5139 . _:genid5139 . _:genid5139 "Search engine specific proteoform scores."^^ . _:genid5139 "PSI:PI"^^ . . . _:genid5140 . _:genid5140 . _:genid5140 . _:genid5140 . _:genid5141 . _:genid5141 . _:genid5141 . _:genid5141 . "Estimation of the global false discovery rate of proteoforms."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002907"^^ . "proteoform-level global FDR"^^ . _:genid5142 . _:genid5142 . _:genid5142 . _:genid5142 "Estimation of the global false discovery rate of proteoforms."^^ . _:genid5142 "PSI:PI"^^ . _:genid5143 . _:genid5143 . _:genid5143 . _:genid5143 "value-type:xsd:double"^^ . _:genid5143 "The allowed value-type for this CV term."^^ . . . _:genid5144 . _:genid5144 . _:genid5144 . _:genid5144 . _:genid5145 . _:genid5145 . _:genid5145 . _:genid5145 . "Estimation of the local false discovery rate of proteoforms."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002908"^^ . "proteoform-level local FDR"^^ . _:genid5146 . _:genid5146 . _:genid5146 . _:genid5146 "Estimation of the local false discovery rate of proteoforms."^^ . _:genid5146 "PSI:PI"^^ . _:genid5147 . _:genid5147 . _:genid5147 . _:genid5147 "value-type:xsd:double"^^ . _:genid5147 "The allowed value-type for this CV term."^^ . . . "Estimated statistical threshold at proteoform-level."^^ . "MS"^^ . "MS:1002909"^^ . "proteoform-level statistical threshold"^^ . _:genid5148 . _:genid5148 . _:genid5148 . _:genid5148 "Estimated statistical threshold at proteoform-level."^^ . _:genid5148 "PSI:PI"^^ . . . _:genid5149 . _:genid5149 . _:genid5149 . _:genid5149 . "Threshold for the global false discovery rate of proteoforms."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002910"^^ . "proteoform-level global FDR threshold"^^ . _:genid5150 . _:genid5150 . _:genid5150 . _:genid5150 "Threshold for the global false discovery rate of proteoforms."^^ . _:genid5150 "PSI:PI"^^ . _:genid5151 . _:genid5151 . _:genid5151 . _:genid5151 "value-type:xsd:double"^^ . _:genid5151 "The allowed value-type for this CV term."^^ . . . _:genid5152 . _:genid5152 . _:genid5152 . _:genid5152 . "Threshold for the local false discovery rate of proteoforms."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002911"^^ . "proteoform-level local FDR threshold"^^ . _:genid5153 . _:genid5153 . _:genid5153 . _:genid5153 "Threshold for the local false discovery rate of proteoforms."^^ . _:genid5153 "PSI:PI"^^ . _:genid5154 . _:genid5154 . _:genid5154 . _:genid5154 "value-type:xsd:double"^^ . _:genid5154 "The allowed value-type for this CV term."^^ . . . "Search engine input parameters specific to TopPIC."^^ . "MS"^^ . "MS:1002912"^^ . "TopPIC input parameter"^^ . _:genid5155 . _:genid5155 . _:genid5155 . _:genid5155 "Search engine input parameters specific to TopPIC."^^ . _:genid5155 "PSI:PI"^^ . . . "Fixed modifications for TopPIC searching."^^ . "MS"^^ . "MS:1002913"^^ . "TopPIC:fixed modification"^^ . _:genid5156 . _:genid5156 . _:genid5156 . _:genid5156 "Fixed modifications for TopPIC searching."^^ . _:genid5156 "PSI:PI"^^ . . . "N-terminal forms of proteins allowed in TopPIC searching."^^ . "MS"^^ . "MS:1002914"^^ . "TopPIC:N-term form"^^ . _:genid5157 . _:genid5157 . _:genid5157 . _:genid5157 "N-terminal forms of proteins allowed in TopPIC searching."^^ . _:genid5157 "PSI:PI"^^ . . . _:genid5158 . _:genid5158 . _:genid5158 . _:genid5158 . "Error tolerance for precursor and fragment masses in PPM."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1002915"^^ . "TopPIC:error tolerance"^^ . _:genid5159 . _:genid5159 . _:genid5159 . _:genid5159 "Error tolerance for precursor and fragment masses in PPM."^^ . _:genid5159 "PSI:PI"^^ . _:genid5160 . _:genid5160 . _:genid5160 . _:genid5160 "value-type:xsd:integer"^^ . _:genid5160 "The allowed value-type for this CV term."^^ . . . _:genid5161 . _:genid5161 . _:genid5161 . _:genid5161 . "Maximum value of the mass shift (in Dalton) of an unexpected modification."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1002916"^^ . "TopPIC:max shift"^^ . _:genid5162 . _:genid5162 . _:genid5162 . _:genid5162 "Maximum value of the mass shift (in Dalton) of an unexpected modification."^^ . _:genid5162 "PSI:PI"^^ . _:genid5163 . _:genid5163 . _:genid5163 . _:genid5163 "value-type:xsd:integer"^^ . _:genid5163 "The allowed value-type for this CV term."^^ . . . _:genid5164 . _:genid5164 . _:genid5164 . _:genid5164 . "Minimum value of the mass shift (in Dalton) of an unexpected modification."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1002917"^^ . "TopPIC:min shift"^^ . _:genid5165 . _:genid5165 . _:genid5165 . _:genid5165 "Minimum value of the mass shift (in Dalton) of an unexpected modification."^^ . _:genid5165 "PSI:PI"^^ . _:genid5166 . _:genid5166 . _:genid5166 . _:genid5166 "value-type:xsd:integer"^^ . _:genid5166 "The allowed value-type for this CV term."^^ . . . _:genid5167 . _:genid5167 . _:genid5167 . _:genid5167 . "Maximum number of unexpected modifications in a proteoform spectrum match."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1002918"^^ . "TopPIC:shift num"^^ . _:genid5168 . _:genid5168 . _:genid5168 . _:genid5168 "Maximum number of unexpected modifications in a proteoform spectrum match."^^ . _:genid5168 "PSI:PI"^^ . _:genid5169 . _:genid5169 . _:genid5169 . _:genid5169 "value-type:xsd:integer"^^ . _:genid5169 "The allowed value-type for this CV term."^^ . . . _:genid5170 . _:genid5170 . _:genid5170 . _:genid5170 . "Spectrum-level cutoff type for filtering identified proteoform spectrum matches."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002919"^^ . "TopPIC:spectral cutoff type"^^ . _:genid5171 . _:genid5171 . _:genid5171 . _:genid5171 "Spectrum-level cutoff type for filtering identified proteoform spectrum matches."^^ . _:genid5171 "PSI:PI"^^ . _:genid5172 . _:genid5172 . _:genid5172 . _:genid5172 "value-type:xsd:string"^^ . _:genid5172 "The allowed value-type for this CV term."^^ . . . _:genid5173 . _:genid5173 . _:genid5173 . _:genid5173 . "Spectrum-level cutoff value for filtering identified proteoform spectrum matches."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002920"^^ . "TopPIC:spectral cutoff value"^^ . _:genid5174 . _:genid5174 . _:genid5174 . _:genid5174 "Spectrum-level cutoff value for filtering identified proteoform spectrum matches."^^ . _:genid5174 "PSI:PI"^^ . _:genid5175 . _:genid5175 . _:genid5175 . _:genid5175 "value-type:xsd:double"^^ . _:genid5175 "The allowed value-type for this CV term."^^ . . . _:genid5176 . _:genid5176 . _:genid5176 . _:genid5176 . "Proteoform-level cutoff type for filtering identified proteoform spectrum matches."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002921"^^ . "TopPIC:proteoform-level cutoff type"^^ . _:genid5177 . _:genid5177 . _:genid5177 . _:genid5177 "Proteoform-level cutoff type for filtering identified proteoform spectrum matches."^^ . _:genid5177 "PSI:PI"^^ . _:genid5178 . _:genid5178 . _:genid5178 . _:genid5178 "value-type:xsd:string"^^ . _:genid5178 "The allowed value-type for this CV term."^^ . . . _:genid5179 . _:genid5179 . _:genid5179 . _:genid5179 . "Proteoform-level cutoff value for filtering identified proteoform spectrum matches."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002922"^^ . "TopPIC:proteoform-level cutoff value"^^ . _:genid5180 . _:genid5180 . _:genid5180 . _:genid5180 "Proteoform-level cutoff value for filtering identified proteoform spectrum matches."^^ . _:genid5180 "PSI:PI"^^ . _:genid5181 . _:genid5181 . _:genid5181 . _:genid5181 "value-type:xsd:double"^^ . _:genid5181 "The allowed value-type for this CV term."^^ . . . _:genid5182 . _:genid5182 . _:genid5182 . _:genid5182 . "P-value and E-value estimation using generating function."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002923"^^ . "TopPIC:generating function"^^ . _:genid5183 . _:genid5183 . _:genid5183 . _:genid5183 "P-value and E-value estimation using generating function."^^ . _:genid5183 "PSI:PI"^^ . _:genid5184 . _:genid5184 . _:genid5184 . _:genid5184 "value-type:xsd:boolean"^^ . _:genid5184 "The allowed value-type for this CV term."^^ . . . _:genid5185 . _:genid5185 . _:genid5185 . _:genid5185 . "Number of combined spectra."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1002924"^^ . "TopPIC:combined spectrum number"^^ . _:genid5186 . _:genid5186 . _:genid5186 . _:genid5186 "Number of combined spectra."^^ . _:genid5186 "PSI:PI"^^ . _:genid5187 . _:genid5187 . _:genid5187 . _:genid5187 "value-type:xsd:integer"^^ . _:genid5187 "The allowed value-type for this CV term."^^ . . . "The text file containing the information of common PTMs."^^ . "MS"^^ . "MS:1002925"^^ . "TopPIC:mod file"^^ . _:genid5188 . _:genid5188 . _:genid5188 . _:genid5188 "The text file containing the information of common PTMs."^^ . _:genid5188 "PSI:PI"^^ . . . _:genid5189 . _:genid5189 . _:genid5189 . _:genid5189 . "Number of threads used in TopPIC."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1002926"^^ . "TopPIC:thread number"^^ . _:genid5190 . _:genid5190 . _:genid5190 . _:genid5190 "Number of threads used in TopPIC."^^ . _:genid5190 "PSI:PI"^^ . _:genid5191 . _:genid5191 . _:genid5191 . _:genid5191 "value-type:xsd:integer"^^ . _:genid5191 "The allowed value-type for this CV term."^^ . . . _:genid5192 . _:genid5192 . _:genid5192 . _:genid5192 . "Proteoform identification using TopFD feature file."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002927"^^ . "TopPIC:use TopFD feature"^^ . _:genid5193 . _:genid5193 . _:genid5193 . _:genid5193 "Proteoform identification using TopFD feature file."^^ . _:genid5193 "PSI:PI"^^ . _:genid5194 . _:genid5194 . _:genid5194 . _:genid5194 "value-type:xsd:boolean"^^ . _:genid5194 "The allowed value-type for this CV term."^^ . . . . _:genid5195 . _:genid5195 . _:genid5195 . _:genid5195 . _:genid5196 . _:genid5196 . _:genid5196 . _:genid5196 . "TopPIC spectrum-level E-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002928"^^ . "TopPIC:spectral E-value"^^ . _:genid5197 . _:genid5197 . _:genid5197 . _:genid5197 "TopPIC spectrum-level E-value."^^ . _:genid5197 "PSI:PI"^^ . _:genid5198 . _:genid5198 . _:genid5198 . _:genid5198 "value-type:xsd:double"^^ . _:genid5198 "The allowed value-type for this CV term."^^ . . . . _:genid5199 . _:genid5199 . _:genid5199 . _:genid5199 . "TopPIC spectrum-level FDR."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002929"^^ . "TopPIC:spectral FDR"^^ . _:genid5200 . _:genid5200 . _:genid5200 . _:genid5200 "TopPIC spectrum-level FDR."^^ . _:genid5200 "PSI:PI"^^ . _:genid5201 . _:genid5201 . _:genid5201 . _:genid5201 "value-type:xsd:double"^^ . _:genid5201 "The allowed value-type for this CV term."^^ . . . . _:genid5202 . _:genid5202 . _:genid5202 . _:genid5202 . "TopPIC proteoform-level FDR."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002930"^^ . "TopPIC:proteoform-level FDR"^^ . _:genid5203 . _:genid5203 . _:genid5203 . _:genid5203 "TopPIC proteoform-level FDR."^^ . _:genid5203 "PSI:PI"^^ . _:genid5204 . _:genid5204 . _:genid5204 . _:genid5204 "value-type:xsd:double"^^ . _:genid5204 "The allowed value-type for this CV term."^^ . . . . _:genid5205 . _:genid5205 . _:genid5205 . _:genid5205 . "TopPIC spectrum-level p-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002931"^^ . "TopPIC:spectral p-value"^^ . _:genid5206 . _:genid5206 . _:genid5206 . _:genid5206 "TopPIC spectrum-level p-value."^^ . _:genid5206 "PSI:PI"^^ . _:genid5207 . _:genid5207 . _:genid5207 . _:genid5207 "value-type:xsd:double"^^ . _:genid5207 "The allowed value-type for this CV term."^^ . . . _:genid5208 . _:genid5208 . _:genid5208 . _:genid5208 . "Modification identification score."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002932"^^ . "TopPIC:MIScore"^^ . _:genid5209 . _:genid5209 . _:genid5209 . _:genid5209 "Modification identification score."^^ . _:genid5209 "PMID:27291504"^^ . _:genid5210 . _:genid5210 . _:genid5210 . _:genid5210 "value-type:xsd:string"^^ . _:genid5210 "The allowed value-type for this CV term."^^ . . . _:genid5211 . _:genid5211 . _:genid5211 . _:genid5211 . "TopPIC:MIScore threshold."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002933"^^ . "TopPIC:MIScore threshold"^^ . _:genid5212 . _:genid5212 . _:genid5212 . _:genid5212 "TopPIC:MIScore threshold."^^ . _:genid5212 "PSI:PI"^^ . _:genid5213 . _:genid5213 . _:genid5213 . _:genid5213 "value-type:xsd:double"^^ . _:genid5213 "The allowed value-type for this CV term."^^ . . . "Search engine input parameters specific to TopMG."^^ . "MS"^^ . "MS:1002934"^^ . "TopMG input parameter"^^ . _:genid5214 . _:genid5214 . _:genid5214 . _:genid5214 "Search engine input parameters specific to TopMG."^^ . _:genid5214 "PSI:PI"^^ . . . "Fixed modifications for TopMG searching."^^ . "MS"^^ . "MS:1002935"^^ . "TopMG:fixed modification"^^ . _:genid5215 . _:genid5215 . _:genid5215 . _:genid5215 "Fixed modifications for TopMG searching."^^ . _:genid5215 "PSI:PI"^^ . . . "N-terminal forms of proteins allowed in TopMG searching."^^ . "MS"^^ . "MS:1002936"^^ . "TopMG:N-term form"^^ . _:genid5216 . _:genid5216 . _:genid5216 . _:genid5216 "N-terminal forms of proteins allowed in TopMG searching."^^ . _:genid5216 "PSI:PI"^^ . . . _:genid5217 . _:genid5217 . _:genid5217 . _:genid5217 . "Error tolerance for precursor and fragment masses in PPM."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1002937"^^ . "TopMG:error tolerance"^^ . _:genid5218 . _:genid5218 . _:genid5218 . _:genid5218 "Error tolerance for precursor and fragment masses in PPM."^^ . _:genid5218 "PSI:PI"^^ . _:genid5219 . _:genid5219 . _:genid5219 . _:genid5219 "value-type:xsd:integer"^^ . _:genid5219 "The allowed value-type for this CV term."^^ . . . _:genid5220 . _:genid5220 . _:genid5220 . _:genid5220 . "Maximum value of the mass shift (in Dalton)."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1002938"^^ . "TopMG:max shift"^^ . _:genid5221 . _:genid5221 . _:genid5221 . _:genid5221 "Maximum value of the mass shift (in Dalton)."^^ . _:genid5221 "PSI:PI"^^ . _:genid5222 . _:genid5222 . _:genid5222 . _:genid5222 "value-type:xsd:integer"^^ . _:genid5222 "The allowed value-type for this CV term."^^ . . . _:genid5223 . _:genid5223 . _:genid5223 . _:genid5223 . "Spectrum-level cutoff type for filtering identified proteoform spectrum matches."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002939"^^ . "TopMG:spectral cutoff type"^^ . _:genid5224 . _:genid5224 . _:genid5224 . _:genid5224 "Spectrum-level cutoff type for filtering identified proteoform spectrum matches."^^ . _:genid5224 "PSI:PI"^^ . _:genid5225 . _:genid5225 . _:genid5225 . _:genid5225 "value-type:xsd:string"^^ . _:genid5225 "The allowed value-type for this CV term."^^ . . . _:genid5226 . _:genid5226 . _:genid5226 . _:genid5226 . "Spectrum-level cutoff value for filtering identified proteoform spectrum matches."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002940"^^ . "TopMG:spectral cutoff value"^^ . _:genid5227 . _:genid5227 . _:genid5227 . _:genid5227 "Spectrum-level cutoff value for filtering identified proteoform spectrum matches."^^ . _:genid5227 "PSI:PI"^^ . _:genid5228 . _:genid5228 . _:genid5228 . _:genid5228 "value-type:xsd:double"^^ . _:genid5228 "The allowed value-type for this CV term."^^ . . . _:genid5229 . _:genid5229 . _:genid5229 . _:genid5229 . "Proteoform-level cutoff type for filtering identified proteoform spectrum matches."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002941"^^ . "TopMG:proteoform-level cutoff type"^^ . _:genid5230 . _:genid5230 . _:genid5230 . _:genid5230 "Proteoform-level cutoff type for filtering identified proteoform spectrum matches."^^ . _:genid5230 "PSI:PI"^^ . _:genid5231 . _:genid5231 . _:genid5231 . _:genid5231 "value-type:xsd:string"^^ . _:genid5231 "The allowed value-type for this CV term."^^ . . . _:genid5232 . _:genid5232 . _:genid5232 . _:genid5232 . "Proteoform-level cutoff value for filtering identified proteoform spectrum matches."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002942"^^ . "TopMG:proteoform-level cutoff value"^^ . _:genid5233 . _:genid5233 . _:genid5233 . _:genid5233 "Proteoform-level cutoff value for filtering identified proteoform spectrum matches."^^ . _:genid5233 "PSI:PI"^^ . _:genid5234 . _:genid5234 . _:genid5234 . _:genid5234 "value-type:xsd:double"^^ . _:genid5234 "The allowed value-type for this CV term."^^ . . . "The text file containing the information of common PTMs."^^ . "MS"^^ . "MS:1002943"^^ . "TopMG:mod file"^^ . _:genid5235 . _:genid5235 . _:genid5235 . _:genid5235 "The text file containing the information of common PTMs."^^ . _:genid5235 "PSI:PI"^^ . . . _:genid5236 . _:genid5236 . _:genid5236 . _:genid5236 . "Number of threads used in TopMG."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1002944"^^ . "TopMG:thread number"^^ . _:genid5237 . _:genid5237 . _:genid5237 . _:genid5237 "Number of threads used in TopMG."^^ . _:genid5237 "PSI:PI"^^ . _:genid5238 . _:genid5238 . _:genid5238 . _:genid5238 "value-type:xsd:integer"^^ . _:genid5238 "The allowed value-type for this CV term."^^ . . . _:genid5239 . _:genid5239 . _:genid5239 . _:genid5239 . "Proteoform identification using TopFD feature file."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002945"^^ . "TopMG:use TopFD feature"^^ . _:genid5240 . _:genid5240 . _:genid5240 . _:genid5240 "Proteoform identification using TopFD feature file."^^ . _:genid5240 "PSI:PI"^^ . _:genid5241 . _:genid5241 . _:genid5241 . _:genid5241 "value-type:xsd:boolean"^^ . _:genid5241 "The allowed value-type for this CV term."^^ . . . _:genid5242 . _:genid5242 . _:genid5242 . _:genid5242 . "Gap size in constructing proteoform graph."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1002946"^^ . "TopMG:proteoform graph gap size"^^ . _:genid5243 . _:genid5243 . _:genid5243 . _:genid5243 "Gap size in constructing proteoform graph."^^ . _:genid5243 "PSI:PI"^^ . _:genid5244 . _:genid5244 . _:genid5244 . _:genid5244 "value-type:xsd:integer"^^ . _:genid5244 "The allowed value-type for this CV term."^^ . . . _:genid5245 . _:genid5245 . _:genid5245 . _:genid5245 . "Maximum number of variable PTMs."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1002947"^^ . "TopMG:variable PTM number"^^ . _:genid5246 . _:genid5246 . _:genid5246 . _:genid5246 "Maximum number of variable PTMs."^^ . _:genid5246 "PSI:PI"^^ . _:genid5247 . _:genid5247 . _:genid5247 . _:genid5247 "value-type:xsd:integer"^^ . _:genid5247 "The allowed value-type for this CV term."^^ . . . _:genid5248 . _:genid5248 . _:genid5248 . _:genid5248 . "Maximum number of variable PTMs in a proteoform graph gap."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "MS:1002948"^^ . "TopMG:variable PTM number in proteoform graph gap"^^ . _:genid5249 . _:genid5249 . _:genid5249 . _:genid5249 "Maximum number of variable PTMs in a proteoform graph gap."^^ . _:genid5249 "PSI:PI"^^ . _:genid5250 . _:genid5250 . _:genid5250 . _:genid5250 "value-type:xsd:integer"^^ . _:genid5250 "The allowed value-type for this CV term."^^ . . . _:genid5251 . _:genid5251 . _:genid5251 . _:genid5251 . "Protein filtering using ASF-DIAGONAL method."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1002949"^^ . "TopMG:use ASF-DIAGONAL"^^ . _:genid5252 . _:genid5252 . _:genid5252 . _:genid5252 "Protein filtering using ASF-DIAGONAL method."^^ . _:genid5252 "PMID:29327814"^^ . _:genid5253 . _:genid5253 . _:genid5253 . _:genid5253 "value-type:xsd:boolean"^^ . _:genid5253 "The allowed value-type for this CV term."^^ . . . . _:genid5254 . _:genid5254 . _:genid5254 . _:genid5254 . _:genid5255 . _:genid5255 . _:genid5255 . _:genid5255 . "TopMG spectrum-level E-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002950"^^ . "TopMG:spectral E-value"^^ . _:genid5256 . _:genid5256 . _:genid5256 . _:genid5256 "TopMG spectrum-level E-value."^^ . _:genid5256 "PSI:PI"^^ . _:genid5257 . _:genid5257 . _:genid5257 . _:genid5257 "value-type:xsd:double"^^ . _:genid5257 "The allowed value-type for this CV term."^^ . . . . _:genid5258 . _:genid5258 . _:genid5258 . _:genid5258 . "TopMG spectrum-level FDR."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002951"^^ . "TopMG:spectral FDR"^^ . _:genid5259 . _:genid5259 . _:genid5259 . _:genid5259 "TopMG spectrum-level FDR."^^ . _:genid5259 "PSI:PI"^^ . _:genid5260 . _:genid5260 . _:genid5260 . _:genid5260 "value-type:xsd:double"^^ . _:genid5260 "The allowed value-type for this CV term."^^ . . . . _:genid5261 . _:genid5261 . _:genid5261 . _:genid5261 . "TopMG proteoform-level FDR."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002952"^^ . "TopMG:proteoform-level FDR"^^ . _:genid5262 . _:genid5262 . _:genid5262 . _:genid5262 "TopMG proteoform-level FDR."^^ . _:genid5262 "PSI:PI"^^ . _:genid5263 . _:genid5263 . _:genid5263 . _:genid5263 "value-type:xsd:double"^^ . _:genid5263 "The allowed value-type for this CV term."^^ . . . . _:genid5264 . _:genid5264 . _:genid5264 . _:genid5264 . "TopMG spectrum-level p-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002953"^^ . "TopMG:spectral p-value"^^ . _:genid5265 . _:genid5265 . _:genid5265 . _:genid5265 "TopMG spectrum-level p-value."^^ . _:genid5265 "PSI:PI"^^ . _:genid5266 . _:genid5266 . _:genid5266 . _:genid5266 "value-type:xsd:double"^^ . _:genid5266 "The allowed value-type for this CV term."^^ . . . _:genid5267 . _:genid5267 . _:genid5267 . _:genid5267 . _:genid5268 . _:genid5268 . _:genid5268 . _:genid5268 . "Structural molecular descriptor for the effective interaction area between the ion and neutral gas measured in ion mobility mass spectrometry."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002954"^^ . "collisional cross sectional area"^^ . _:genid5269 . _:genid5269 . _:genid5269 . _:genid5269 "Structural molecular descriptor for the effective interaction area between the ion and neutral gas measured in ion mobility mass spectrometry."^^ . _:genid5269 "PSI:PI"^^ . _:genid5270 . _:genid5270 . _:genid5270 . _:genid5270 "value-type:xsd:double"^^ . _:genid5270 "The allowed value-type for this CV term."^^ . . . _:genid5271 . _:genid5271 . _:genid5271 . _:genid5271 . "Refined High Resolution mass spectrometry confidence level for annotation of identified compounds as proposed by Schymanski et al. The value slot can have the values 'Level 1', 'Level 2', 'Level 2a', 'Level 2b', 'Level 3', 'Level 4', and 'Level 5'."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002955"^^ . "hr-ms compound identification confidence level"^^ . _:genid5272 . _:genid5272 . _:genid5272 . _:genid5272 "Refined High Resolution mass spectrometry confidence level for annotation of identified compounds as proposed by Schymanski et al. The value slot can have the values 'Level 1', 'Level 2', 'Level 2a', 'Level 2b', 'Level 3', 'Level 4', and 'Level 5'."^^ . _:genid5272 "PMID:24476540"^^ . _:genid5273 . _:genid5273 . _:genid5273 . _:genid5273 "value-type:xsd:string"^^ . _:genid5273 "The allowed value-type for this CV term."^^ . . . _:genid5274 . _:genid5274 . _:genid5274 . _:genid5274 . "A mass spectrometry peak that represents one or more isotopic ions. The value slot contains a description of the represented isotope set, e.g. 'M+1 peak'."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002956"^^ . "isotopic ion MS peak"^^ . _:genid5275 . _:genid5275 . _:genid5275 . _:genid5275 "A mass spectrometry peak that represents one or more isotopic ions. The value slot contains a description of the represented isotope set, e.g. 'M+1 peak'."^^ . _:genid5275 "PSI:PI"^^ . _:genid5276 . _:genid5276 . _:genid5276 . _:genid5276 "value-type:xsd:string"^^ . _:genid5276 "The allowed value-type for this CV term."^^ . . . _:genid5277 . _:genid5277 . _:genid5277 . _:genid5277 . "The described isotopomer mass spectrometric signal. The value slot contains a description of the represented isotopomer, e.g. '13C peak', '15N peak', '2H peak', '18O peak' or '31P peak'."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002957"^^ . "isotopomer MS peak"^^ . _:genid5278 . _:genid5278 . _:genid5278 . _:genid5278 "The described isotopomer mass spectrometric signal. The value slot contains a description of the represented isotopomer, e.g. '13C peak', '15N peak', '2H peak', '18O peak' or '31P peak'."^^ . _:genid5278 "PSI:PI"^^ . _:genid5279 . _:genid5279 . _:genid5279 . _:genid5279 "value-type:xsd:string"^^ . _:genid5279 "The allowed value-type for this CV term."^^ . . . _:genid5280 . _:genid5280 . _:genid5280 . _:genid5280 . "The described isotopologue mass spectrometric signal. The value slot contains a description of the represented isotopologue, e.g. '13C1 peak' or '15N1 peak'."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002958"^^ . "isotopologue MS peak"^^ . _:genid5281 . _:genid5281 . _:genid5281 . _:genid5281 "The described isotopologue mass spectrometric signal. The value slot contains a description of the represented isotopologue, e.g. '13C1 peak' or '15N1 peak'."^^ . _:genid5281 "PSI:PI"^^ . _:genid5282 . _:genid5282 . _:genid5282 . _:genid5282 "value-type:xsd:string"^^ . _:genid5282 "The allowed value-type for this CV term."^^ . . . _:genid5283 . _:genid5283 . _:genid5283 . _:genid5283 . "One of several species (or molecular entities) that have the same atomic composition (molecular formula) but different line formulae or different stereochemical formulae."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002959"^^ . "isomer"^^ . _:genid5284 . _:genid5284 . _:genid5284 . _:genid5284 "One of several species (or molecular entities) that have the same atomic composition (molecular formula) but different line formulae or different stereochemical formulae."^^ . _:genid5284 "https://goldbook.iupac.org/html/I/I03289.html"^^ . _:genid5285 . _:genid5285 . _:genid5285 . _:genid5285 "value-type:xsd:string"^^ . _:genid5285 "The allowed value-type for this CV term."^^ . . . _:genid5286 . _:genid5286 . _:genid5286 . _:genid5286 . "An isomer that differs from another only in the spatial distribution of the constitutive isotopic atoms."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002960"^^ . "isotopomer"^^ . _:genid5287 . _:genid5287 . _:genid5287 . _:genid5287 "An isomer that differs from another only in the spatial distribution of the constitutive isotopic atoms."^^ . _:genid5287 "https://goldbook.iupac.org/html/I/I03352.html"^^ . _:genid5288 . _:genid5288 . _:genid5288 . _:genid5288 "value-type:xsd:string"^^ . _:genid5288 "The allowed value-type for this CV term."^^ . . . _:genid5289 . _:genid5289 . _:genid5289 . _:genid5289 . "A molecular entity that differs only in isotopic composition (number of isotopic substitutions)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1002961"^^ . "isotopologue"^^ . _:genid5290 . _:genid5290 . _:genid5290 . _:genid5290 "A molecular entity that differs only in isotopic composition (number of isotopic substitutions)."^^ . _:genid5290 "https://goldbook.iupac.org/html/I/I03351.html"^^ . _:genid5291 . _:genid5291 . _:genid5291 . _:genid5291 "value-type:xsd:string"^^ . _:genid5291 "The allowed value-type for this CV term."^^ . . . "The arithmetic mean."^^ . "MS"^^ . "MS:1002962"^^ . "mean"^^ . _:genid5292 . _:genid5292 . _:genid5292 . _:genid5292 "The arithmetic mean."^^ . _:genid5292 "PSI:PI"^^ . . . "The coefficient of variation."^^ . "MS"^^ . "MS:1002963"^^ . "variation coefficient"^^ . _:genid5293 . _:genid5293 . _:genid5293 . _:genid5293 "The coefficient of variation."^^ . _:genid5293 "PSI:PI"^^ . . . "Lipidomics analysis software."^^ . "MS"^^ . "MS:1002964"^^ . "lipidomics analysis software"^^ . _:genid5294 . _:genid5294 . _:genid5294 . _:genid5294 "Lipidomics analysis software."^^ . _:genid5294 "PSI:PI"^^ . . . . "Lipid Data Analyzer software for lipid quantification."^^ . "MS"^^ . "MS:1002965"^^ . "Lipid Data Analyzer"^^ . _:genid5295 . _:genid5295 . _:genid5295 . _:genid5295 "Lipid Data Analyzer software for lipid quantification."^^ . _:genid5295 "PMID:29058722"^^ . . . "The Lipid Data Analyzer native chrom format."^^ . "MS"^^ . "MS:1002966"^^ . "chrom format"^^ . _:genid5296 . _:genid5296 . _:genid5296 . _:genid5296 "The Lipid Data Analyzer native chrom format."^^ . _:genid5296 "PSI:PI"^^ . . . . "Software for identification of phospholipids by high-throughput processing of LC-MS and shotgun lipidomics datasets."^^ . "MS"^^ . "MS:1002967"^^ . "LipidHunter"^^ . _:genid5297 . _:genid5297 . _:genid5297 . _:genid5297 "Software for identification of phospholipids by high-throughput processing of LC-MS and shotgun lipidomics datasets."^^ . _:genid5297 "PMID:28753264"^^ . . . . "Software for consensual cross-platform lipidomics."^^ . "MS"^^ . "MS:1002968"^^ . "LipidXplorer"^^ . _:genid5298 . _:genid5298 . _:genid5298 . _:genid5298 "Software for consensual cross-platform lipidomics."^^ . _:genid5298 "PMID:22272252"^^ . . . . "An automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data."^^ . "MS"^^ . "MS:1002969"^^ . "LipidMatch"^^ . _:genid5299 . _:genid5299 . _:genid5299 . _:genid5299 "An automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data."^^ . _:genid5299 "PMID:28693421"^^ . . . . "Open-source software for automated phospholipid tandem mass spectrometry identification."^^ . "MS"^^ . "MS:1002970"^^ . "Greazy"^^ . _:genid5300 . _:genid5300 . _:genid5300 . _:genid5300 "Open-source software for automated phospholipid tandem mass spectrometry identification."^^ . _:genid5300 "PMID:27186799"^^ . . . . "LC-MS-based lipidomics and automated identification of lipids using the LipidBlast in-silico MS/MS library."^^ . "MS"^^ . "MS:1002971"^^ . "LipidBlast"^^ . _:genid5301 . _:genid5301 . _:genid5301 . _:genid5301 "LC-MS-based lipidomics and automated identification of lipids using the LipidBlast in-silico MS/MS library."^^ . _:genid5301 "PMID:28660581"^^ . . . . "A computational lipid identification solution for untargeted lipidomics on data-independent acquisition tandem mass spectrometry platforms."^^ . "MS"^^ . "MS:1002972"^^ . "Lipid-Pro"^^ . _:genid5302 . _:genid5302 . _:genid5302 . _:genid5302 "A computational lipid identification solution for untargeted lipidomics on data-independent acquisition tandem mass spectrometry platforms."^^ . _:genid5302 "PMID:25433698"^^ . . . . "A computational workflow for the discovery of lipids for the identification of eicosanoid-phosphoinositides in platelets."^^ . "MS"^^ . "MS:1002973"^^ . "LipidFinder"^^ . _:genid5303 . _:genid5303 . _:genid5303 . _:genid5303 "A computational workflow for the discovery of lipids for the identification of eicosanoid-phosphoinositides in platelets."^^ . _:genid5303 "PMID:28405621"^^ . . . . "An integrated software package for high-confidence lipid identification."^^ . "MS"^^ . "MS:1002974"^^ . "LipiDex"^^ . _:genid5304 . _:genid5304 . _:genid5304 . _:genid5304 "An integrated software package for high-confidence lipid identification."^^ . _:genid5304 "PMID:29705063"^^ . . . . "An-open source software for identifying lipids in LC-MS/MS-based lipidomics data."^^ . "MS"^^ . "MS:1002975"^^ . "LIQUID"^^ . _:genid5305 . _:genid5305 . _:genid5305 . _:genid5305 "An-open source software for identifying lipids in LC-MS/MS-based lipidomics data."^^ . _:genid5305 "PMID:28158427"^^ . . . . "Analysis of lipid experiments, a calculator for m/z values of intact lipid molecules (MS1)."^^ . "MS"^^ . "MS:1002976"^^ . "ALEX"^^ . _:genid5306 . _:genid5306 . _:genid5306 . _:genid5306 "Analysis of lipid experiments, a calculator for m/z values of intact lipid molecules (MS1)."^^ . _:genid5306 "PMID:24244551"^^ . . . . "Analysis of lipid experiments 123, a calculator with m/z values of intact lipid molecules (MS1) and their fragment ions at the MS2 and MS3 level."^^ . "MS"^^ . "MS:1002977"^^ . "ALEX123"^^ . _:genid5307 . _:genid5307 . _:genid5307 . _:genid5307 "Analysis of lipid experiments 123, a calculator with m/z values of intact lipid molecules (MS1) and their fragment ions at the MS2 and MS3 level."^^ . _:genid5307 "PMID:29786091"^^ . . . . "Software tool for the quantitative analysis of mass spectrometric lipidome data."^^ . "MS"^^ . "MS:1002978"^^ . "LIMSA"^^ . _:genid5308 . _:genid5308 . _:genid5308 . _:genid5308 "Software tool for the quantitative analysis of mass spectrometric lipidome data."^^ . _:genid5308 "PMID:17165823"^^ . . . . "Adduct-Based lipidomics software for the discovery and identification of oxidative stress biomarkers."^^ . "MS"^^ . "MS:1002979"^^ . "LOBSTAHS"^^ . _:genid5309 . _:genid5309 . _:genid5309 . _:genid5309 "Adduct-Based lipidomics software for the discovery and identification of oxidative stress biomarkers."^^ . _:genid5309 "PMID:27322848"^^ . . . . "Lipid qualitative/quantitative analysis software for identification and quantitation of complex lipid molecular species."^^ . "MS"^^ . "MS:1002980"^^ . "LipidQA"^^ . _:genid5310 . _:genid5310 . _:genid5310 . _:genid5310 "Lipid qualitative/quantitative analysis software for identification and quantitation of complex lipid molecular species."^^ . _:genid5310 "PMID:17720531"^^ . . . "The Proline software suite for mass spectrometry based proteomics."^^ . "MS"^^ . "MS:1002981"^^ . "Proline"^^ . _:genid5311 . _:genid5311 . _:genid5311 . _:genid5311 "The Proline software suite for mass spectrometry based proteomics."^^ . _:genid5311 "http://www.profiproteomics.fr/proline/"^^ . . . "PepNovo tool for de novo peptide sequencing."^^ . "MS"^^ . "MS:1002982"^^ . "PepNovo"^^ . _:genid5312 . _:genid5312 . _:genid5312 . _:genid5312 "PepNovo tool for de novo peptide sequencing."^^ . _:genid5312 "PMID:15858974"^^ . . . "pNovo tool for de novo peptide sequencing and identification using HCD spectra."^^ . "MS"^^ . "MS:1002983"^^ . "pNovo"^^ . _:genid5313 . _:genid5313 . _:genid5313 . _:genid5313 "pNovo tool for de novo peptide sequencing and identification using HCD spectra."^^ . _:genid5313 "PMID:20329752"^^ . . . "Novor real-time peptide de novo sequencing software tool."^^ . "MS"^^ . "MS:1002984"^^ . "Novor"^^ . _:genid5314 . _:genid5314 . _:genid5314 . _:genid5314 "Novor real-time peptide de novo sequencing software tool."^^ . _:genid5314 "PMID:26122521"^^ . . . "Digestion of proteins separated by gel electrophoresis for mass spectrometric characterization of proteins and proteomes."^^ . "MS"^^ . "MS:1002985"^^ . "in-gel digestion"^^ . _:genid5315 . _:genid5315 . _:genid5315 . _:genid5315 "Digestion of proteins separated by gel electrophoresis for mass spectrometric characterization of proteins and proteomes."^^ . _:genid5315 "PSI:PI"^^ . . . "Digestion of proteins in solution for mass spectrometric characterization of proteins and proteomes."^^ . "MS"^^ . "MS:1002986"^^ . "in-solution digestion"^^ . _:genid5316 . _:genid5316 . _:genid5316 . _:genid5316 "Digestion of proteins in solution for mass spectrometric characterization of proteins and proteomes."^^ . _:genid5316 "PSI:PI"^^ . . . "IdentiPy."^^ . "MS"^^ . "MS:1002987"^^ . "IdentiPy"^^ . _:genid5317 . _:genid5317 . _:genid5317 . _:genid5317 "IdentiPy."^^ . _:genid5317 "PMID:29682971"^^ . _:genid5317 "https://bitbucket.org/levitsky/identipy"^^ . . . _:genid5318 . _:genid5318 . _:genid5318 . _:genid5318 . _:genid5319 . _:genid5319 . _:genid5319 . _:genid5319 . "The IdentiPy result 'RHNS'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002988"^^ . "IdentiPy:RHNS"^^ . _:genid5320 . _:genid5320 . _:genid5320 . _:genid5320 "The IdentiPy result 'RHNS'."^^ . _:genid5320 "PSI:PI"^^ . _:genid5321 . _:genid5321 . _:genid5321 . _:genid5321 "value-type:xsd:double"^^ . _:genid5321 "The allowed value-type for this CV term."^^ . . . _:genid5322 . _:genid5322 . _:genid5322 . _:genid5322 . _:genid5323 . _:genid5323 . _:genid5323 . _:genid5323 . "The IdentiPy result 'hyperscore'."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002989"^^ . "IdentiPy:hyperscore"^^ . _:genid5324 . _:genid5324 . _:genid5324 . _:genid5324 "The IdentiPy result 'hyperscore'."^^ . _:genid5324 "PSI:PI"^^ . _:genid5325 . _:genid5325 . _:genid5325 . _:genid5325 "value-type:xsd:double"^^ . _:genid5325 "The allowed value-type for this CV term."^^ . . . "ms_deisotope, a library for deisotoping and charge state deconvolution of mass spectra."^^ . "MS"^^ . "MS:1002990"^^ . "ms_deisotope"^^ . _:genid5326 . _:genid5326 . _:genid5326 . _:genid5326 "ms_deisotope, a library for deisotoping and charge state deconvolution of mass spectra."^^ . _:genid5326 "https://github.com/mobiusklein/ms_deisotope"^^ . . . "python-psims, a library for generating mzML and mzIdentML."^^ . "MS"^^ . "MS:1002991"^^ . "python-psims"^^ . _:genid5327 . _:genid5327 . _:genid5327 . _:genid5327 "python-psims, a library for generating mzML and mzIdentML."^^ . _:genid5327 "https://github.com/mobiusklein/psims"^^ . . . _:genid5328 . _:genid5328 . _:genid5328 . _:genid5328 . _:genid5329 . _:genid5329 . _:genid5329 . _:genid5329 . _:genid5330 . _:genid5330 . _:genid5330 . _:genid5330 . "Posterior error probability of the best identified peptide of the Andromeda search engine."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1002995"^^ . "Andromeda:PEP"^^ . _:genid5331 . _:genid5331 . _:genid5331 . _:genid5331 "Posterior error probability of the best identified peptide of the Andromeda search engine."^^ . _:genid5331 "PSI:PI"^^ . _:genid5332 . _:genid5332 . _:genid5332 . _:genid5332 "value-type:xsd:double"^^ . _:genid5332 "The allowed value-type for this CV term."^^ . . . "Peak list file format of the Andromeda search engine."^^ . "MS"^^ . "MS:1002996"^^ . "Andromeda:apl file format"^^ . _:genid5333 . _:genid5333 . _:genid5333 . _:genid5333 "Peak list file format of the Andromeda search engine."^^ . _:genid5333 "PSI:PI"^^ . . . _:genid5334 . _:genid5334 . _:genid5334 . _:genid5334 . "Index number of a reanalysis within a ProteomeXchange reprocessed dataset identifier container (RPXD)."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1002997"^^ . "ProteomeXchange dataset identifier reanalysis number"^^ . _:genid5335 . _:genid5335 . _:genid5335 . _:genid5335 "Index number of a reanalysis within a ProteomeXchange reprocessed dataset identifier container (RPXD)."^^ . _:genid5335 "PSI:PI"^^ . _:genid5336 . _:genid5336 . _:genid5336 . _:genid5336 "value-type:xsd:nonNegativeInteger"^^ . _:genid5336 "The allowed value-type for this CV term."^^ . . . "Shimadzu Scientific Instruments LCMS-9030 Q-TOF MS."^^ . "MS"^^ . "MS:1002998"^^ . "LCMS-9030"^^ . _:genid5337 . _:genid5337 . _:genid5337 . _:genid5337 "Shimadzu Scientific Instruments LCMS-9030 Q-TOF MS."^^ . _:genid5337 "PSI:MS"^^ . . . "Shimadzu Scientific Instruments LCMS-8060 MS."^^ . "MS"^^ . "MS:1002999"^^ . "LCMS-8060"^^ . _:genid5338 . _:genid5338 . _:genid5338 . _:genid5338 "Shimadzu Scientific Instruments LCMS-8060 MS."^^ . _:genid5338 "PSI:MS"^^ . . . "Shimadzu Scientific Instruments LCMS-8050 MS."^^ . "MS"^^ . "MS:1003000"^^ . "LCMS-8050"^^ . _:genid5339 . _:genid5339 . _:genid5339 . _:genid5339 "Shimadzu Scientific Instruments LCMS-8050 MS."^^ . _:genid5339 "PSI:MS"^^ . . . "Shimadzu Scientific Instruments LCMS-8045 MS."^^ . "MS"^^ . "MS:1003001"^^ . "LCMS-8045"^^ . _:genid5340 . _:genid5340 . _:genid5340 . _:genid5340 "Shimadzu Scientific Instruments LCMS-8045 MS."^^ . _:genid5340 "PSI:MS"^^ . . . "Shimadzu Scientific Instruments LCMS-8040 MS."^^ . "MS"^^ . "MS:1003002"^^ . "LCMS-8040"^^ . _:genid5341 . _:genid5341 . _:genid5341 . _:genid5341 "Shimadzu Scientific Instruments LCMS-8040 MS."^^ . _:genid5341 "PSI:MS"^^ . . . "Shimadzu Scientific Instruments LCMS-2020."^^ . "MS"^^ . "MS:1003003"^^ . "LCMS-2020"^^ . _:genid5342 . _:genid5342 . _:genid5342 . _:genid5342 "Shimadzu Scientific Instruments LCMS-2020."^^ . _:genid5342 "PSI:MS"^^ . . . "Bruker Daltonics' maXis II."^^ . "MS"^^ . "MS:1003004"^^ . "maXis II"^^ . _:genid5343 . _:genid5343 . _:genid5343 . _:genid5343 "Bruker Daltonics' maXis II."^^ . _:genid5343 "PSI:MS"^^ . . . "Bruker Daltonics' timsTOF Pro."^^ . "MS"^^ . "MS:1003005"^^ . "timsTOF Pro"^^ . _:genid5344 . _:genid5344 . _:genid5344 . _:genid5344 "Bruker Daltonics' timsTOF Pro."^^ . _:genid5344 "PSI:MS"^^ . . . _:genid5345 . _:genid5345 . _:genid5345 . _:genid5345 . _:genid5346 . _:genid5346 . _:genid5346 . _:genid5346 . "Array of population mean ion mobility values based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, normalized for the local conditions and reported in volt-second per square centimeter, corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1003006"^^ . "mean inverse reduced ion mobility array"^^ . _:genid5347 . _:genid5347 . _:genid5347 . _:genid5347 "Array of population mean ion mobility values based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, normalized for the local conditions and reported in volt-second per square centimeter, corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . _:genid5347 "PSI:MS"^^ . _:genid5348 . _:genid5348 . _:genid5348 . _:genid5348 "value-type:xsd:float"^^ . _:genid5348 "The allowed value-type for this CV term."^^ . . . _:genid5349 . _:genid5349 . _:genid5349 . _:genid5349 . _:genid5350 . _:genid5350 . _:genid5350 . _:genid5350 . _:genid5351 . _:genid5351 . _:genid5351 . _:genid5351 . "Array of raw ion mobility values (K or K0) based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1003007"^^ . "raw ion mobility array"^^ . _:genid5352 . _:genid5352 . _:genid5352 . _:genid5352 "Array of raw ion mobility values (K or K0) based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . _:genid5352 "PSI:MS"^^ . _:genid5353 . _:genid5353 . _:genid5353 . _:genid5353 "value-type:xsd:float"^^ . _:genid5353 "The allowed value-type for this CV term."^^ . . . _:genid5354 . _:genid5354 . _:genid5354 . _:genid5354 . _:genid5355 . _:genid5355 . _:genid5355 . _:genid5355 . "Array of raw ion mobility values based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, normalized for the local conditions and reported in volt-second per square centimeter, corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1003008"^^ . "raw inverse reduced ion mobility array"^^ . _:genid5356 . _:genid5356 . _:genid5356 . _:genid5356 "Array of raw ion mobility values based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, normalized for the local conditions and reported in volt-second per square centimeter, corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . _:genid5356 "PSI:MS"^^ . _:genid5357 . _:genid5357 . _:genid5357 . _:genid5357 "value-type:xsd:float"^^ . _:genid5357 "The allowed value-type for this CV term."^^ . . . "Shimadzu Biotech LCD file format."^^ . "MS"^^ . "MS:1003009"^^ . "Shimadzu Biotech LCD format"^^ . _:genid5358 . _:genid5358 . _:genid5358 . _:genid5358 "Shimadzu Biotech LCD file format."^^ . _:genid5358 "PSI:PI"^^ . . . . "Software for lipidome-specific prediction and identification of oxidized phospholipids from LC-MS datasets."^^ . "MS"^^ . "MS:1003010"^^ . "LPPtiger"^^ . _:genid5359 . _:genid5359 . _:genid5359 . _:genid5359 "Software for lipidome-specific prediction and identification of oxidized phospholipids from LC-MS datasets."^^ . _:genid5359 "PMID:29123162"^^ . . . "Sequence-tag-based search engine pFind."^^ . "MS"^^ . "MS:1003011"^^ . "pFind"^^ . _:genid5360 . _:genid5360 . _:genid5360 . _:genid5360 "Sequence-tag-based search engine pFind."^^ . _:genid5360 "PMID:30295672"^^ . . . _:genid5361 . _:genid5361 . _:genid5361 . _:genid5361 . "Kernel mass spectral dot product scoring function."^^ . "MS"^^ . "MS:1003012"^^ . "KSDP score"^^ . _:genid5362 . _:genid5362 . _:genid5362 . _:genid5362 "Kernel mass spectral dot product scoring function."^^ . _:genid5362 "PMID:15044235"^^ . . . "i3-tms search engine and data-analysis software."^^ . "MS"^^ . "MS:1003013"^^ . "i3tms"^^ . _:genid5363 . _:genid5363 . _:genid5363 . _:genid5363 "i3-tms search engine and data-analysis software."^^ . _:genid5363 "PSI:PI"^^ . . . "A database search-based peptide identification tool."^^ . "MS"^^ . "MS:1003014"^^ . "MSFragger"^^ . _:genid5364 . _:genid5364 . _:genid5364 . _:genid5364 "A database search-based peptide identification tool."^^ . _:genid5364 "PMID:28394336"^^ . . . "Peptide that is shared between protein groups and assigned to the protein group with the largest number of identified peptides."^^ . "MS"^^ . "MS:1003015"^^ . "razor peptide"^^ . _:genid5365 . _:genid5365 . _:genid5365 . _:genid5365 "Peptide that is shared between protein groups and assigned to the protein group with the largest number of identified peptides."^^ . _:genid5365 "PSI:MS"^^ . . . . _:genid5366 . _:genid5366 . _:genid5366 . _:genid5366 . _:genid5367 . _:genid5367 . _:genid5367 . _:genid5367 . _:genid5368 . _:genid5368 . _:genid5368 . _:genid5368 . "Fraction of peptide evidence attributable to a protein or a set of indistinguishable proteins."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1003016"^^ . "ProteinProphet:peptide weight"^^ . _:genid5369 . _:genid5369 . _:genid5369 . _:genid5369 "Fraction of peptide evidence attributable to a protein or a set of indistinguishable proteins."^^ . _:genid5369 "PSI:PI"^^ . _:genid5370 . _:genid5370 . _:genid5370 . _:genid5370 "value-type:xsd:float"^^ . _:genid5370 "The allowed value-type for this CV term."^^ . . . . _:genid5371 . _:genid5371 . _:genid5371 . _:genid5371 . _:genid5372 . _:genid5372 . _:genid5372 . _:genid5372 . _:genid5373 . _:genid5373 . _:genid5373 . _:genid5373 . "Fraction of peptide evidence attributable to a group of proteins."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1003017"^^ . "ProteinProphet:peptide group weight"^^ . _:genid5374 . _:genid5374 . _:genid5374 . _:genid5374 "Fraction of peptide evidence attributable to a group of proteins."^^ . _:genid5374 "PSI:PI"^^ . _:genid5375 . _:genid5375 . _:genid5375 . _:genid5375 "value-type:xsd:float"^^ . _:genid5375 "The allowed value-type for this CV term."^^ . . . "General proteomics processing toolkit for shotgun proteomics."^^ . "MS"^^ . "MS:1003018"^^ . "Philosopher"^^ . _:genid5376 . _:genid5376 . _:genid5376 . _:genid5376 "General proteomics processing toolkit for shotgun proteomics."^^ . _:genid5376 "https://philosopher.nesvilab.org/"^^ . . . "Representation of chromatographic pressure versus time."^^ . "MS"^^ . "MS:1003019"^^ . "pressure chromatogram"^^ . _:genid5377 . _:genid5377 . _:genid5377 . _:genid5377 "Representation of chromatographic pressure versus time."^^ . _:genid5377 "PSI:MS"^^ . . . "Representation of the chromatographic flow rate versus time."^^ . "MS"^^ . "MS:1003020"^^ . "flow rate chromatogram"^^ . _:genid5378 . _:genid5378 . _:genid5378 . _:genid5378 "Representation of the chromatographic flow rate versus time."^^ . _:genid5378 "PSI:MS"^^ . . . . "Post-translational modification which is assumed to be present at each instance of a residue type."^^ . "MS"^^ . "MS:1003021"^^ . "Fixed modification"^^ . _:genid5379 . _:genid5379 . _:genid5379 . _:genid5379 "Post-translational modification which is assumed to be present at each instance of a residue type."^^ . _:genid5379 "PSI:PI"^^ . . . . "Post-translational modification which may or may not be present at a residue type."^^ . "MS"^^ . "MS:1003022"^^ . "Variable modification"^^ . _:genid5380 . _:genid5380 . _:genid5380 . _:genid5380 "Post-translational modification which may or may not be present at a residue type."^^ . _:genid5380 "PSI:PI"^^ . . . "Cross-Linking MS search engine."^^ . "MS"^^ . "MS:1003023"^^ . "OpenPepXL"^^ . _:genid5381 . _:genid5381 . _:genid5381 . _:genid5381 "Cross-Linking MS search engine."^^ . _:genid5381 "PSI:PI"^^ . . . . _:genid5382 . _:genid5382 . _:genid5382 . _:genid5382 . _:genid5383 . _:genid5383 . _:genid5383 . _:genid5383 . "The OpenPepXL score for a cross-link spectrum match."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003024"^^ . "OpenPepXL:score"^^ . _:genid5384 . _:genid5384 . _:genid5384 . _:genid5384 "The OpenPepXL score for a cross-link spectrum match."^^ . _:genid5384 "PSI:PI"^^ . _:genid5385 . _:genid5385 . _:genid5385 . _:genid5385 "value-type:xsd:double"^^ . _:genid5385 "The allowed value-type for this CV term."^^ . . _:genid5386 . _:genid5386 . _:genid5386 . _:genid5386 . "A named element that is an attribute in a proteomics standards file."^^ . "MS"^^ . "MS:1003025"^^ . "named element"^^ . _:genid5387 . _:genid5387 . _:genid5387 . _:genid5387 "A named element that is an attribute in a proteomics standards file."^^ . _:genid5387 "PSI:PI"^^ . . . "A named element that is an attribute in a mzIdentML file."^^ . "MS"^^ . "MS:1003026"^^ . "named element in mzIdentML"^^ . _:genid5388 . _:genid5388 . _:genid5388 . _:genid5388 "A named element that is an attribute in a mzIdentML file."^^ . _:genid5388 "PSI:PI"^^ . . . "A named element that is an attribute in a mzML file."^^ . "MS"^^ . "MS:1003027"^^ . "named element in mzML"^^ . _:genid5389 . _:genid5389 . _:genid5389 . _:genid5389 "A named element that is an attribute in a mzML file."^^ . _:genid5389 "PSI:PI"^^ . . . "Thermo Scientific Orbitrap Exploris 480 Quadrupole Orbitrap MS."^^ . "MS"^^ . "MS:1003028"^^ . "Orbitrap Exploris 480"^^ . _:genid5390 . _:genid5390 . _:genid5390 . _:genid5390 "Thermo Scientific Orbitrap Exploris 480 Quadrupole Orbitrap MS."^^ . _:genid5390 "PSI:PI"^^ . . . "Thermo Scientific Orbitrap Eclipse mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers."^^ . "MS"^^ . "MS:1003029"^^ . "Orbitrap Eclipse"^^ . _:genid5391 . _:genid5391 . _:genid5391 . _:genid5391 "Thermo Scientific Orbitrap Eclipse mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers."^^ . _:genid5391 "PSI:PI"^^ . . . _:genid5392 . _:genid5392 . _:genid5392 . _:genid5392 . "Minimum number of significant unique sequences required in a protein hit. The setting is only relevant if the protein grouping strategy is 'family clustering'."^^ . "value-type:xsd:nonNegativeInteger"^^ . "MS"^^ . "MS:1003030"^^ . "Mascot:MinNumSigUniqueSeqs"^^ . _:genid5393 . _:genid5393 . _:genid5393 . _:genid5393 "Minimum number of significant unique sequences required in a protein hit. The setting is only relevant if the protein grouping strategy is 'family clustering'."^^ . _:genid5393 "PSI:PI"^^ . _:genid5394 . _:genid5394 . _:genid5394 . _:genid5394 "value-type:xsd:nonNegativeInteger"^^ . _:genid5394 "The allowed value-type for this CV term."^^ . . . _:genid5395 . _:genid5395 . _:genid5395 . _:genid5395 . "Main identifier of a CPTAC dataset."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003031"^^ . "CPTAC accession number"^^ . _:genid5396 . _:genid5396 . _:genid5396 . _:genid5396 "Main identifier of a CPTAC dataset."^^ . _:genid5396 "PSI:PI"^^ . _:genid5397 . _:genid5397 . _:genid5397 . _:genid5397 "value-type:xsd:string"^^ . _:genid5397 "The allowed value-type for this CV term."^^ . . . _:genid5398 . _:genid5398 . _:genid5398 . _:genid5398 . "The confidence code to describe the confidence of annotated compounds as defined by the MS-DIAL program."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003032"^^ . "compound identification confidence code in MS-DIAL"^^ . _:genid5399 . _:genid5399 . _:genid5399 . _:genid5399 "The confidence code to describe the confidence of annotated compounds as defined by the MS-DIAL program."^^ . _:genid5399 "PMID:25938372"^^ . _:genid5399 "http://prime.psc.riken.jp/Metabolomics_Software/MS-DIAL"^^ . _:genid5400 . _:genid5400 . _:genid5400 . _:genid5400 "value-type:xsd:string"^^ . _:genid5400 "The allowed value-type for this CV term."^^ . . _:genid5401 . _:genid5401 . _:genid5401 . _:genid5401 . "Non-inherent characteristic attributed to a molecular entity."^^ . "MS"^^ . "MS:1003033"^^ . "molecular entity attribute"^^ . _:genid5402 . _:genid5402 . _:genid5402 . _:genid5402 "Non-inherent characteristic attributed to a molecular entity."^^ . _:genid5402 "PSI:PI"^^ . . . "Smallest constituent unit of ordinary matter that constitutes a chemical element."^^ . "MS"^^ . "MS:1003034"^^ . "atom"^^ . _:genid5403 . _:genid5403 . _:genid5403 . _:genid5403 "Smallest constituent unit of ordinary matter that constitutes a chemical element."^^ . _:genid5403 "https://en.wikipedia.org/wiki/Atom"^^ . . . "Low molecular weight (< 900 daltons) organic compound that may regulate a biological process."^^ . "MS"^^ . "MS:1003035"^^ . "small molecule"^^ . _:genid5404 . _:genid5404 . _:genid5404 . _:genid5404 "Low molecular weight (< 900 daltons) organic compound that may regulate a biological process."^^ . _:genid5404 "https://en.wikipedia.org/wiki/Small_molecule"^^ . . . "Small molecule that is the intermediate end product of metabolism."^^ . "MS"^^ . "MS:1003036"^^ . "metabolite"^^ . _:genid5405 . _:genid5405 . _:genid5405 . _:genid5405 "Small molecule that is the intermediate end product of metabolism."^^ . _:genid5405 "https://en.wikipedia.org/wiki/Metabolite"^^ . . . "Nucleotide containing ribose as its pentose component."^^ . "MS"^^ . "MS:1003037"^^ . "ribonucleotide"^^ . _:genid5406 . _:genid5406 . _:genid5406 . _:genid5406 "Nucleotide containing ribose as its pentose component."^^ . _:genid5406 "https://en.wikipedia.org/wiki/Ribonucleotide"^^ . . . "Monomer, or single unit, of DNA, or deoxyribonucleic acid."^^ . "MS"^^ . "MS:1003038"^^ . "deoxyribonucleotide"^^ . _:genid5407 . _:genid5407 . _:genid5407 . _:genid5407 "Monomer, or single unit, of DNA, or deoxyribonucleic acid."^^ . _:genid5407 "https://en.wikipedia.org/wiki/Deoxyribonucleotide"^^ . . . "Organic molecule that contains amine (-NH2) and carboxyl (-COOH) functional groups, along with a side chain (R group) that is specific to each amino acid."^^ . "MS"^^ . "MS:1003039"^^ . "amino acid"^^ . _:genid5408 . _:genid5408 . _:genid5408 . _:genid5408 "Organic molecule that contains amine (-NH2) and carboxyl (-COOH) functional groups, along with a side chain (R group) that is specific to each amino acid."^^ . _:genid5408 "https://en.wikipedia.org/wiki/Amino_acid"^^ . . . "Simplest form of sugar and the most basic units of carbohydrate that cannot be further hydrolyzed to a simpler molecule."^^ . "MS"^^ . "MS:1003040"^^ . "monosaccharide"^^ . _:genid5409 . _:genid5409 . _:genid5409 . _:genid5409 "Simplest form of sugar and the most basic units of carbohydrate that cannot be further hydrolyzed to a simpler molecule."^^ . _:genid5409 "https://en.wikipedia.org/wiki/Monosaccharide"^^ . . . "Molecule composed of a chain of nucleotides."^^ . "MS"^^ . "MS:1003041"^^ . "nucleic acid"^^ . _:genid5410 . _:genid5410 . _:genid5410 . _:genid5410 "Molecule composed of a chain of nucleotides."^^ . _:genid5410 "https://en.wikipedia.org/wiki/Nucleic_acid"^^ . . . "Polymeric carbohydrate molecules composed of long chains of monosaccharide units bound together by glycosidic linkages."^^ . "MS"^^ . "MS:1003042"^^ . "polysaccharide"^^ . _:genid5411 . _:genid5411 . _:genid5411 . _:genid5411 "Polymeric carbohydrate molecules composed of long chains of monosaccharide units bound together by glycosidic linkages."^^ . _:genid5411 "https://en.wikipedia.org/wiki/Polysaccharide"^^ . . . "Number of amino acid residues in a peptide, commonly referred to as the peptide length."^^ . "MS"^^ . "MS:1003043"^^ . "number of residues"^^ . _:genid5412 . _:genid5412 . _:genid5412 . _:genid5412 "Number of amino acid residues in a peptide, commonly referred to as the peptide length."^^ . _:genid5412 "PSI:PI"^^ . . . "Number of amino acid residue bonds that should have been cleaved by the cleavage agent used, but were not."^^ . "MS"^^ . "MS:1003044"^^ . "number of missed cleavages"^^ . _:genid5413 . _:genid5413 . _:genid5413 . _:genid5413 "Number of amino acid residue bonds that should have been cleaved by the cleavage agent used, but were not."^^ . _:genid5413 "PSI:PI"^^ . . . "Process of mapping a peptide sequence to a protein sequence."^^ . "MS"^^ . "MS:1003045"^^ . "peptide-to-protein mapping"^^ . _:genid5414 . _:genid5414 . _:genid5414 . _:genid5414 "Process of mapping a peptide sequence to a protein sequence."^^ . _:genid5414 "PSI:PI"^^ . . . "Nonphysical characteristic attributed to the result of peptide-to-protein mapping."^^ . "MS"^^ . "MS:1003046"^^ . "peptide-to-protein mapping attribute"^^ . _:genid5415 . _:genid5415 . _:genid5415 . _:genid5415 "Nonphysical characteristic attributed to the result of peptide-to-protein mapping."^^ . _:genid5415 "PSI:PI"^^ . . . "Offset in number of residues from the n terminus of the protein at which the peptide begins. Use 1 when the first residue of the peptide sequence is the first residue of the protein sequence."^^ . "MS"^^ . "MS:1003047"^^ . "protein sequence offset"^^ . _:genid5416 . _:genid5416 . _:genid5416 . _:genid5416 "Offset in number of residues from the n terminus of the protein at which the peptide begins. Use 1 when the first residue of the peptide sequence is the first residue of the protein sequence."^^ . _:genid5416 "PSI:PI"^^ . . . "Total number of termini that match standard rules for the cleavage agent, 2 when both termini match cleavage agent rules, 1 when only one terminus does, and 0 if neither terminus matches cleavage agent rules."^^ . "MS"^^ . "MS:1003048"^^ . "number of enzymatic termini"^^ . _:genid5417 . _:genid5417 . _:genid5417 . _:genid5417 "Total number of termini that match standard rules for the cleavage agent, 2 when both termini match cleavage agent rules, 1 when only one terminus does, and 0 if neither terminus matches cleavage agent rules."^^ . _:genid5417 "PSI:PI"^^ . . . "Peptide that contains zero or more mass modifications on the termini or side chains of its amino acid residues, and may be differentiated from other peptidoforms with the same peptide sequence but different mass modification configurations."^^ . "MS"^^ . "MS:1003049"^^ . "peptidoform"^^ . _:genid5418 . _:genid5418 . _:genid5418 . _:genid5418 "Peptide that contains zero or more mass modifications on the termini or side chains of its amino acid residues, and may be differentiated from other peptidoforms with the same peptide sequence but different mass modification configurations."^^ . _:genid5418 "PSI:PI"^^ . . _:genid5419 . _:genid5419 . _:genid5419 . _:genid5419 . "Non-inherent characteristic attributed to a peptidoform."^^ . "MS"^^ . "MS:1003050"^^ . "peptidoform attribute"^^ . _:genid5420 . _:genid5420 . _:genid5420 . _:genid5420 "Non-inherent characteristic attributed to a peptidoform."^^ . _:genid5420 "PSI:PI"^^ . . . "Peptidoform that has formed an adduct with an ion, thereby rendering it potentially detectable with a mass spectrometer. Commonly called a 'precursor' or 'precursor ion' or 'parent ion'."^^ . "MS"^^ . "parent ion"^^ . "precursor"^^ . "precursor ion"^^ . "MS:1003051"^^ . "peptidoform ion"^^ . _:genid5421 . _:genid5421 . _:genid5421 . _:genid5421 "Peptidoform that has formed an adduct with an ion, thereby rendering it potentially detectable with a mass spectrometer. Commonly called a 'precursor' or 'precursor ion' or 'parent ion'."^^ . _:genid5421 "PSI:PI"^^ . . _:genid5422 . _:genid5422 . _:genid5422 . _:genid5422 . "Inherent or measurable characteristic of a peptidoform ion."^^ . "MS"^^ . "MS:1003052"^^ . "peptidoform ion property"^^ . _:genid5423 . _:genid5423 . _:genid5423 . _:genid5423 "Inherent or measurable characteristic of a peptidoform ion."^^ . _:genid5423 "PSI:PI"^^ . . . "Mass-to-charge ratio of a peptidoform ion composed of the most common isotope of each atom computed from the putative knowledge of its molecular constituents."^^ . "MS"^^ . "MS:1003053"^^ . "theoretical monoisotopic m/z"^^ . _:genid5424 . _:genid5424 . _:genid5424 . _:genid5424 "Mass-to-charge ratio of a peptidoform ion composed of the most common isotope of each atom computed from the putative knowledge of its molecular constituents."^^ . _:genid5424 "PSI:PI"^^ . . . "Mass-to-charge ratio of a peptidoform ion computed from the putative knowledge of its molecular constituents, averaged over the distribution of naturally occurring isotopes."^^ . "MS"^^ . "MS:1003054"^^ . "theoretical average m/z"^^ . _:genid5425 . _:genid5425 . _:genid5425 . _:genid5425 "Mass-to-charge ratio of a peptidoform ion computed from the putative knowledge of its molecular constituents, averaged over the distribution of naturally occurring isotopes."^^ . _:genid5425 "PSI:PI"^^ . . . "Product of a direct addition of two or more distinct molecules, resulting in a single reaction product containing all atoms of all components. The resultant is considered a distinct molecular species."^^ . "MS"^^ . "MS:1003055"^^ . "adduct"^^ . _:genid5426 . _:genid5426 . _:genid5426 . _:genid5426 "Product of a direct addition of two or more distinct molecules, resulting in a single reaction product containing all atoms of all components. The resultant is considered a distinct molecular species."^^ . _:genid5426 "https://en.wikipedia.org/wiki/Adduct"^^ . . _:genid5427 . _:genid5427 . _:genid5427 . _:genid5427 . "Physical measurable characteristic of an adduct ion."^^ . "MS"^^ . "MS:1003056"^^ . "adduct ion property"^^ . _:genid5428 . _:genid5428 . _:genid5428 . _:genid5428 "Physical measurable characteristic of an adduct ion."^^ . _:genid5428 "PSI:PI"^^ . . . "Ordinal number of the scan indicating its order of acquisition within a mass spectrometry acquisition run."^^ . "MS"^^ . "MS:1003057"^^ . "scan number"^^ . _:genid5429 . _:genid5429 . _:genid5429 . _:genid5429 "Ordinal number of the scan indicating its order of acquisition within a mass spectrometry acquisition run."^^ . _:genid5429 "PSI:PI"^^ . . _:genid5430 . _:genid5430 . _:genid5430 . _:genid5430 . "Inherent or measurable characteristic of a spectrum."^^ . "MS"^^ . "MS:1003058"^^ . "spectrum property"^^ . _:genid5431 . _:genid5431 . _:genid5431 . _:genid5431 "Inherent or measurable characteristic of a spectrum."^^ . _:genid5431 "PSI:PI"^^ . . . "Number of peaks or features in a spectrum. For a peak-picked spectrum, this will correspond to the number of data points. For a non-peak-picked spectrum, this corresponds to the number of features discernable in the spectrum, which will be fewer than the number of data points."^^ . "MS"^^ . "MS:1003059"^^ . "number of peaks"^^ . _:genid5432 . _:genid5432 . _:genid5432 . _:genid5432 "Number of peaks or features in a spectrum. For a peak-picked spectrum, this will correspond to the number of data points. For a non-peak-picked spectrum, this corresponds to the number of features discernable in the spectrum, which will be fewer than the number of data points."^^ . _:genid5432 "PSI:PI"^^ . . . "Number of data points in a spectrum. For a peak-picked spectrum, this will correspond to the number of peaks. For a non-peak-picked spectrum, this corresponds to the number of values in the data array, which are not all peaks."^^ . "MS"^^ . "MS:1003060"^^ . "number of data points"^^ . _:genid5433 . _:genid5433 . _:genid5433 . _:genid5433 "Number of data points in a spectrum. For a peak-picked spectrum, this will correspond to the number of peaks. For a non-peak-picked spectrum, this corresponds to the number of values in the data array, which are not all peaks."^^ . _:genid5433 "PSI:PI"^^ . . . "Label attached to a spectrum uniquely naming it within a collection of spectra, often in a spectral library. It is often a string combination of peptide sequence, charge, mass modifications, collision energy, but will obviously be different for small molecules or unidentified spectra. It must be unique within a collection."^^ . "MS"^^ . "MS:1003061"^^ . "spectrum name"^^ . _:genid5434 . _:genid5434 . _:genid5434 . _:genid5434 "Label attached to a spectrum uniquely naming it within a collection of spectra, often in a spectral library. It is often a string combination of peptide sequence, charge, mass modifications, collision energy, but will obviously be different for small molecules or unidentified spectra. It must be unique within a collection."^^ . _:genid5434 "PSI:PI"^^ . . . "Integer index value that indicates the spectrum's ordered position within a spectral library. By custom, index counters should begin with 0."^^ . "MS"^^ . "MS:1003062"^^ . "library entry index"^^ . _:genid5435 . _:genid5435 . _:genid5435 . _:genid5435 "Integer index value that indicates the spectrum's ordered position within a spectral library. By custom, index counters should begin with 0."^^ . _:genid5435 "PSI:PI"^^ . . . "PSI universal spectrum identifier (USI) multipart key that uniquely identifies a spectrum available in a ProteomeXchange datasets or spectral library."^^ . "MS"^^ . "MS:1003063"^^ . "universal spectrum identifier"^^ . _:genid5436 . _:genid5436 . _:genid5436 . _:genid5436 "PSI universal spectrum identifier (USI) multipart key that uniquely identifies a spectrum available in a ProteomeXchange datasets or spectral library."^^ . _:genid5436 "PSI:PI"^^ . . . "Non-inherent characteristic attributed to spectrum aggregation."^^ . "MS"^^ . "MS:1003064"^^ . "spectrum aggregation attribute"^^ . _:genid5437 . _:genid5437 . _:genid5437 . _:genid5437 "Non-inherent characteristic attributed to spectrum aggregation."^^ . _:genid5437 "PSI:PI"^^ . . . "Categorization of a spectrum based on its type of aggregation (e.g., individual spectrum, consensus spectrum, best replicate spectrum, etc.)."^^ . "MS"^^ . "MS:1003065"^^ . "spectrum aggregation type"^^ . _:genid5438 . _:genid5438 . _:genid5438 . _:genid5438 "Categorization of a spectrum based on its type of aggregation (e.g., individual spectrum, consensus spectrum, best replicate spectrum, etc.)."^^ . _:genid5438 "PSI:PI"^^ . . . "Spectrum that is not the result of some aggregation process."^^ . "MS"^^ . "MS:1003066"^^ . "singleton spectrum"^^ . _:genid5439 . _:genid5439 . _:genid5439 . _:genid5439 "Spectrum that is not the result of some aggregation process."^^ . _:genid5439 "PSI:PI"^^ . . . "Spectrum that is the result of merging several replicate spectra to form a spectrum that is more representative of its class and ideally less noisy that any of its source replicates."^^ . "MS"^^ . "MS:1003067"^^ . "consensus spectrum"^^ . _:genid5440 . _:genid5440 . _:genid5440 . _:genid5440 "Spectrum that is the result of merging several replicate spectra to form a spectrum that is more representative of its class and ideally less noisy that any of its source replicates."^^ . _:genid5440 "PSI:PI"^^ . . . "Spectrum that is considered the most representative from a pool of replicate spectra."^^ . "MS"^^ . "MS:1003068"^^ . "best replicate spectrum"^^ . _:genid5441 . _:genid5441 . _:genid5441 . _:genid5441 "Spectrum that is considered the most representative from a pool of replicate spectra."^^ . _:genid5441 "PSI:PI"^^ . . . "Number of replicate spectra available for use during the aggregation process."^^ . "MS"^^ . "MS:1003069"^^ . "number of replicate spectra available"^^ . _:genid5442 . _:genid5442 . _:genid5442 . _:genid5442 "Number of replicate spectra available for use during the aggregation process."^^ . _:genid5442 "PSI:PI"^^ . . . "Number of replicate spectra used during the aggregation process. This is generally applicable when there are many replicates available, but some are discarded as being low S/N, blended, or otherwise unsuitable, and the remaining set is then used for merging via a consensus algorithm."^^ . "MS"^^ . "MS:1003070"^^ . "number of replicate spectra used"^^ . _:genid5443 . _:genid5443 . _:genid5443 . _:genid5443 "Number of replicate spectra used during the aggregation process. This is generally applicable when there are many replicates available, but some are discarded as being low S/N, blended, or otherwise unsuitable, and the remaining set is then used for merging via a consensus algorithm."^^ . _:genid5443 "PSI:PI"^^ . . . "Non-inherent characteristic attributed to spectrum aggregation."^^ . "MS"^^ . "MS:1003071"^^ . "spectrum origin attribute"^^ . _:genid5444 . _:genid5444 . _:genid5444 . _:genid5444 "Non-inherent characteristic attributed to spectrum aggregation."^^ . _:genid5444 "PSI:PI"^^ . . . "Categorization of a spectrum based on its origin (e.g., observed spectrum, predicted spectrum, demultiplexed spectrum, etc.)."^^ . "MS"^^ . "MS:1003072"^^ . "spectrum origin type"^^ . _:genid5445 . _:genid5445 . _:genid5445 . _:genid5445 "Categorization of a spectrum based on its origin (e.g., observed spectrum, predicted spectrum, demultiplexed spectrum, etc.)."^^ . _:genid5445 "PSI:PI"^^ . . . "Spectrum that originates from an analysis attempt of a single analyte species on an instrument."^^ . "MS"^^ . "MS:1003073"^^ . "observed spectrum"^^ . _:genid5446 . _:genid5446 . _:genid5446 . _:genid5446 "Spectrum that originates from an analysis attempt of a single analyte species on an instrument."^^ . _:genid5446 "PSI:PI"^^ . . . "Spectrum that originates from a compututational algorithm that attempts to predict spectra."^^ . "MS"^^ . "MS:1003074"^^ . "predicted spectrum"^^ . _:genid5447 . _:genid5447 . _:genid5447 . _:genid5447 "Spectrum that originates from a compututational algorithm that attempts to predict spectra."^^ . _:genid5447 "PSI:PI"^^ . . . "Spectrum that originates from an attempted extraction of a single ion spieces from a multiplexed spectrum that contains multiple ion species."^^ . "MS"^^ . "MS:1003075"^^ . "demultiplexed spectrum"^^ . _:genid5448 . _:genid5448 . _:genid5448 . _:genid5448 "Spectrum that originates from an attempted extraction of a single ion spieces from a multiplexed spectrum that contains multiple ion species."^^ . _:genid5448 "PSI:PI"^^ . . . "Spectrum provided in the form of plain numerical values without any information pertaining to the interpretation of features."^^ . "MS"^^ . "MS:1003076"^^ . "uninterpreted spectrum"^^ . _:genid5449 . _:genid5449 . _:genid5449 . _:genid5449 "Spectrum provided in the form of plain numerical values without any information pertaining to the interpretation of features."^^ . _:genid5449 "PSI:PI"^^ . . . "Spectrum provided in a form where specific features of the spectrum are interpreted to provide putative explanations for some feature."^^ . "MS"^^ . "MS:1003077"^^ . "interpreted spectrum"^^ . _:genid5450 . _:genid5450 . _:genid5450 . _:genid5450 "Spectrum provided in a form where specific features of the spectrum are interpreted to provide putative explanations for some feature."^^ . _:genid5450 "PSI:PI"^^ . . _:genid5451 . _:genid5451 . _:genid5451 . _:genid5451 . "Non-inherent characteristic attributed to an interpreted spectrum."^^ . "MS"^^ . "MS:1003078"^^ . "interpreted spectrum attribute"^^ . _:genid5452 . _:genid5452 . _:genid5452 . _:genid5452 "Non-inherent characteristic attributed to an interpreted spectrum."^^ . _:genid5452 "PSI:PI"^^ . . . "Fraction of intensity summed from all unassigned peaks divided by the intensity summed from all peaks in the spectrum."^^ . "MS"^^ . "MS:1003079"^^ . "total unassigned intensity fraction"^^ . _:genid5453 . _:genid5453 . _:genid5453 . _:genid5453 "Fraction of intensity summed from all unassigned peaks divided by the intensity summed from all peaks in the spectrum."^^ . _:genid5453 "PSI:PI"^^ . . . "Fraction of intensity summed from unassigned peaks among the top 20 divided by the intensity summed from all top 20 peaks in the spectrum."^^ . "MS"^^ . "MS:1003080"^^ . "top 20 peak unassigned intensity fraction"^^ . _:genid5454 . _:genid5454 . _:genid5454 . _:genid5454 "Fraction of intensity summed from unassigned peaks among the top 20 divided by the intensity summed from all top 20 peaks in the spectrum."^^ . _:genid5454 "PSI:PI"^^ . . . _:genid5455 . _:genid5455 . _:genid5455 . _:genid5455 . _:genid5456 . _:genid5456 . _:genid5456 . _:genid5456 . "Monoisotopic mass delta in Daltons of an amino acid residue modification whose atomic composition or molecular identity has not been determined. This term should not be used for modifications of known molecular identity such as those available in Unimod, RESID or PSI-MOD. This term MUST NOT be used inside the element in mzIdentML."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003081"^^ . "unidentified modification monoisotopic mass delta"^^ . _:genid5457 . _:genid5457 . _:genid5457 . _:genid5457 "Monoisotopic mass delta in Daltons of an amino acid residue modification whose atomic composition or molecular identity has not been determined. This term should not be used for modifications of known molecular identity such as those available in Unimod, RESID or PSI-MOD. This term MUST NOT be used inside the element in mzIdentML."^^ . _:genid5457 "PSI:PI"^^ . _:genid5458 . _:genid5458 . _:genid5458 . _:genid5458 "value-type:xsd:double"^^ . _:genid5458 "The allowed value-type for this CV term."^^ . . . . "Data processing software for untargeted metabolomics and lipidomics that supports multiple instruments and MS vendors."^^ . "MS"^^ . "MS:1003082"^^ . "MS-DIAL"^^ . _:genid5459 . _:genid5459 . _:genid5459 . _:genid5459 "Data processing software for untargeted metabolomics and lipidomics that supports multiple instruments and MS vendors."^^ . _:genid5459 "PMID:25938372"^^ . . . "Data file that contains original data as generated by an instrument, although not necessarily in the original data format (i.e. an original raw file converted to a different format is still a raw data file)."^^ . "MS"^^ . "MS:1003083"^^ . "raw data file"^^ . _:genid5460 . _:genid5460 . _:genid5460 . _:genid5460 "Data file that contains original data as generated by an instrument, although not necessarily in the original data format (i.e. an original raw file converted to a different format is still a raw data file)."^^ . _:genid5460 "PSI:MS"^^ . . . _:genid5461 . _:genid5461 . _:genid5461 . _:genid5461 . "File that contains data that has been substantially processed or transformed from what was originally acquired by an instrument."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003084"^^ . "processed data file"^^ . _:genid5462 . _:genid5462 . _:genid5462 . _:genid5462 "File that contains data that has been substantially processed or transformed from what was originally acquired by an instrument."^^ . _:genid5462 "PSI:MS"^^ . _:genid5463 . _:genid5463 . _:genid5463 . _:genid5463 "value-type:xsd:string"^^ . _:genid5463 "The allowed value-type for this CV term."^^ . . . . _:genid5464 . _:genid5464 . _:genid5464 . _:genid5464 . "Intensity of the precursor ion in the previous MSn-1 scan (prior in time to the referencing MSn scan). For an MS2 scan, this means the MS1 precursor intensity. It is unspecified on whether this is an apex (across m/z) intensity, integrated (across m/z) intensity, a centroided peak intensity of unknown origin, or even summed across several isotopes."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003085"^^ . "previous MSn-1 scan precursor intensity"^^ . _:genid5465 . _:genid5465 . _:genid5465 . _:genid5465 "Intensity of the precursor ion in the previous MSn-1 scan (prior in time to the referencing MSn scan). For an MS2 scan, this means the MS1 precursor intensity. It is unspecified on whether this is an apex (across m/z) intensity, integrated (across m/z) intensity, a centroided peak intensity of unknown origin, or even summed across several isotopes."^^ . _:genid5465 "PSI:MS"^^ . _:genid5466 . _:genid5466 . _:genid5466 . _:genid5466 "value-type:xsd:string"^^ . _:genid5466 "The allowed value-type for this CV term."^^ . . . . _:genid5467 . _:genid5467 . _:genid5467 . _:genid5467 . "Intensity of the precursor ion current as measured by its apex point over time and m/z. It is unspecified whether this is the intensity of the selected isotope or the most intense isotope."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003086"^^ . "precursor apex intensity"^^ . _:genid5468 . _:genid5468 . _:genid5468 . _:genid5468 "Intensity of the precursor ion current as measured by its apex point over time and m/z. It is unspecified whether this is the intensity of the selected isotope or the most intense isotope."^^ . _:genid5468 "PSI:MS"^^ . _:genid5469 . _:genid5469 . _:genid5469 . _:genid5469 "value-type:xsd:string"^^ . _:genid5469 "The allowed value-type for this CV term."^^ . . . "Dataset for which the identifications and/or spectra/traces are in formats that can be parsed by the hosting data repository such that internal references between identifications and spectra/traces are preserved and browsable at the repository. However, some metadata is not properly described due to lack of CV terms or some auxiliary data, such as data used to create a spectral library or a sequence search database crucial to the analysis, is not available."^^ . "MS"^^ . "MS:1003087"^^ . "supported by repository but incomplete data and/or metadata"^^ . _:genid5470 . _:genid5470 . _:genid5470 . _:genid5470 "Dataset for which the identifications and/or spectra/traces are in formats that can be parsed by the hosting data repository such that internal references between identifications and spectra/traces are preserved and browsable at the repository. However, some metadata is not properly described due to lack of CV terms or some auxiliary data, such as data used to create a spectral library or a sequence search database crucial to the analysis, is not available."^^ . _:genid5470 "PSI:PI"^^ . . . "Data array compression using mantissa bit truncation followed by zlib compression."^^ . "MS"^^ . "MS:1003088"^^ . "truncation and zlib compression"^^ . _:genid5471 . _:genid5471 . _:genid5471 . _:genid5471 "Data array compression using mantissa bit truncation followed by zlib compression."^^ . _:genid5471 "https://github.com/biospi/pwiz"^^ . . . "Data array compression using mantissa bit truncation, delta prediction and zlib compression."^^ . "MS"^^ . "MS:1003089"^^ . "truncation, delta prediction and zlib compression"^^ . _:genid5472 . _:genid5472 . _:genid5472 . _:genid5472 "Data array compression using mantissa bit truncation, delta prediction and zlib compression."^^ . _:genid5472 "https://github.com/biospi/pwiz"^^ . . . "Data array compression using mantissa bit truncation, linear prediction and zlib compression."^^ . "MS"^^ . "MS:1003090"^^ . "truncation, linear prediction and zlib compression"^^ . _:genid5473 . _:genid5473 . _:genid5473 . _:genid5473 "Data array compression using mantissa bit truncation, linear prediction and zlib compression."^^ . _:genid5473 "https://github.com/biospi/pwiz"^^ . . _:genid5474 . _:genid5474 . _:genid5474 . _:genid5474 . _:genid5475 . _:genid5475 . _:genid5475 . _:genid5475 . "Settable parameter for a binary data compression event."^^ . "MS"^^ . "MS:1003091"^^ . "binary data compression parameter"^^ . _:genid5476 . _:genid5476 . _:genid5476 . _:genid5476 "Settable parameter for a binary data compression event."^^ . _:genid5476 "PSI:MS"^^ . . . _:genid5477 . _:genid5477 . _:genid5477 . _:genid5477 . "Number of extraneous mantissa bits truncated to improve subsequent compression."^^ . "value-type:xsd:positiveInteger"^^ . "MS"^^ . "MS:1003092"^^ . "number of mantissa bits truncated"^^ . _:genid5478 . _:genid5478 . _:genid5478 . _:genid5478 "Number of extraneous mantissa bits truncated to improve subsequent compression."^^ . _:genid5478 "PSI:MS"^^ . _:genid5479 . _:genid5479 . _:genid5479 . _:genid5479 "value-type:xsd:positiveInteger"^^ . _:genid5479 "Number of mantissa bits truncated."^^ . . . _:genid5480 . _:genid5480 . _:genid5480 . _:genid5480 . "Metalloendopeptidase found in the mushroom Grifola frondosa that cleaves proteins on the amino side of lysine residues."^^ . "MS"^^ . "MS:1003093"^^ . "Lys-N"^^ . _:genid5481 . _:genid5481 . _:genid5481 . _:genid5481 "Metalloendopeptidase found in the mushroom Grifola frondosa that cleaves proteins on the amino side of lysine residues."^^ . _:genid5481 "https://en.wikipedia.org/wiki/Lys-N"^^ . . . "Thermo Scientific Orbitrap Exploris 240 Quadrupole Orbitrap MS."^^ . "MS"^^ . "MS:1003094"^^ . "Orbitrap Exploris 240"^^ . _:genid5482 . _:genid5482 . _:genid5482 . _:genid5482 "Thermo Scientific Orbitrap Exploris 240 Quadrupole Orbitrap MS."^^ . _:genid5482 "PSI:PI"^^ . . . "Thermo Scientific Orbitrap Exploris 120 Quadrupole Orbitrap MS."^^ . "MS"^^ . "MS:1003095"^^ . "Orbitrap Exploris 120"^^ . _:genid5483 . _:genid5483 . _:genid5483 . _:genid5483 "Thermo Scientific Orbitrap Exploris 120 Quadrupole Orbitrap MS."^^ . _:genid5483 "PSI:PI"^^ . . . "Thermo Scientific LTQ Orbitrap Velos Pro, often just referred to as the Orbitrap Velos Pro."^^ . "MS"^^ . "MS:1003096"^^ . "LTQ Orbitrap Velos Pro"^^ . _:genid5484 . _:genid5484 . _:genid5484 . _:genid5484 "Thermo Scientific LTQ Orbitrap Velos Pro, often just referred to as the Orbitrap Velos Pro."^^ . _:genid5484 "PSI:MS"^^ . . . _:genid5485 . _:genid5485 . _:genid5485 . _:genid5485 . "The probability based MaxQuant protein group score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003097"^^ . "MaxQuant protein group-level score"^^ . _:genid5486 . _:genid5486 . _:genid5486 . _:genid5486 "The probability based MaxQuant protein group score."^^ . _:genid5486 "PSI:MS"^^ . _:genid5487 . _:genid5487 . _:genid5487 . _:genid5487 "value-type:xsd:double"^^ . _:genid5487 "The allowed value-type for this CV term."^^ . . . _:genid5488 . _:genid5488 . _:genid5488 . _:genid5488 . "Peptide probability from Andromeda."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003098"^^ . "Andromeda peptide PEP"^^ . _:genid5489 . _:genid5489 . _:genid5489 . _:genid5489 "Peptide probability from Andromeda."^^ . _:genid5489 "PSI:MS"^^ . _:genid5490 . _:genid5490 . _:genid5490 . _:genid5490 "value-type:xsd:double"^^ . _:genid5490 "The allowed value-type for this CV term."^^ . . . _:genid5491 . _:genid5491 . _:genid5491 . _:genid5491 . "Peptide probability from MaxQuant-DIA algorithm."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003099"^^ . "MaxQuant-DIA peptide PEP"^^ . _:genid5492 . _:genid5492 . _:genid5492 . _:genid5492 "Peptide probability from MaxQuant-DIA algorithm."^^ . _:genid5492 "PSI:MS"^^ . _:genid5493 . _:genid5493 . _:genid5493 . _:genid5493 "value-type:xsd:double"^^ . _:genid5493 "The allowed value-type for this CV term."^^ . . . _:genid5494 . _:genid5494 . _:genid5494 . _:genid5494 . "PSM evidence score from MaxQuant-DIA algorithm."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003100"^^ . "MaxQuant-DIA score"^^ . _:genid5495 . _:genid5495 . _:genid5495 . _:genid5495 "PSM evidence score from MaxQuant-DIA algorithm."^^ . _:genid5495 "PSI:MS"^^ . _:genid5496 . _:genid5496 . _:genid5496 . _:genid5496 "value-type:xsd:double"^^ . _:genid5496 "The allowed value-type for this CV term."^^ . . . _:genid5497 . _:genid5497 . _:genid5497 . _:genid5497 . "PSM evidence PEP probability from MaxQuant-DIA algorithm."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003101"^^ . "MaxQuant-DIA PEP"^^ . _:genid5498 . _:genid5498 . _:genid5498 . _:genid5498 "PSM evidence PEP probability from MaxQuant-DIA algorithm."^^ . _:genid5498 "PSI:MS"^^ . _:genid5499 . _:genid5499 . _:genid5499 . _:genid5499 "value-type:xsd:double"^^ . _:genid5499 "The allowed value-type for this CV term."^^ . . . _:genid5500 . _:genid5500 . _:genid5500 . _:genid5500 . "Term for a comment field withing the NIST msp file format"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003102"^^ . "NIST msp comment"^^ . _:genid5501 . _:genid5501 . _:genid5501 . _:genid5501 "Term for a comment field withing the NIST msp file format"^^ . _:genid5501 "PSI:MS"^^ . _:genid5502 . _:genid5502 . _:genid5502 . _:genid5502 "value-type:xsd:string"^^ . _:genid5502 "The allowed value-type for this CV term."^^ . . . "Interpretation format used for annotating individual spectrum ion peaks."^^ . "MS"^^ . "MS:1003103"^^ . "ion interpretation format"^^ . _:genid5503 . _:genid5503 . _:genid5503 . _:genid5503 "Interpretation format used for annotating individual spectrum ion peaks."^^ . _:genid5503 "PSI:MS"^^ . . . "Interpretation format designed primarily for peptides, with allowances for generic chemical formulas and other miscellaneous named ions."^^ . "MS"^^ . "MS:1003104"^^ . "peptide ion interpretation format"^^ . _:genid5504 . _:genid5504 . _:genid5504 . _:genid5504 "Interpretation format designed primarily for peptides, with allowances for generic chemical formulas and other miscellaneous named ions."^^ . _:genid5504 "PSI:MS"^^ . . . "Interpretation format designed specifically for cross-linked peptide ion peaks."^^ . "MS"^^ . "MS:1003105"^^ . "cross-linked peptide ion interpretation format"^^ . _:genid5505 . _:genid5505 . _:genid5505 . _:genid5505 "Interpretation format designed specifically for cross-linked peptide ion peaks."^^ . _:genid5505 "PSI:MS"^^ . . . "Interpretation format designed specifically for glycan ion peaks."^^ . "MS"^^ . "MS:1003106"^^ . "glycan ion interpretation format"^^ . _:genid5506 . _:genid5506 . _:genid5506 . _:genid5506 "Interpretation format designed specifically for glycan ion peaks."^^ . _:genid5506 "PSI:MS"^^ . . . "Interpretation format designed specifically for lipid ion peaks."^^ . "MS"^^ . "MS:1003107"^^ . "lipid ion interpretation format"^^ . _:genid5507 . _:genid5507 . _:genid5507 . _:genid5507 "Interpretation format designed specifically for lipid ion peaks."^^ . _:genid5507 "PSI:MS"^^ . . . . "PatternLab for Proteomics is an integrated computational environment for analyzing shotgun proteomic data."^^ . "MS"^^ . "MS:1003108"^^ . "PatternLab"^^ . _:genid5508 . _:genid5508 . _:genid5508 . _:genid5508 "PatternLab for Proteomics is an integrated computational environment for analyzing shotgun proteomic data."^^ . _:genid5508 "PSI:MS"^^ . . . "Identifying cross-linked peptides in complex protein mixtures"^^ . "MS"^^ . "MS:1003109"^^ . "SIM-XL"^^ . _:genid5509 . _:genid5509 . _:genid5509 . _:genid5509 "Identifying cross-linked peptides in complex protein mixtures"^^ . _:genid5509 "PSI:MS"^^ . . . _:genid5510 . _:genid5510 . _:genid5510 . _:genid5510 . _:genid5511 . _:genid5511 . _:genid5511 . _:genid5511 . "SIM-XL identification search engine score"^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003110"^^ . "SIM-XL score"^^ . _:genid5512 . _:genid5512 . _:genid5512 . _:genid5512 "SIM-XL identification search engine score"^^ . _:genid5512 "PSI:MS"^^ . _:genid5513 . _:genid5513 . _:genid5513 . _:genid5513 "value-type:xsd:double"^^ . _:genid5513 "The allowed value-type for this CV term."^^ . . . "Quantification of cross-linked peptides in complex protein mixtures"^^ . "MS"^^ . "MS:1003111"^^ . "QUIN-XL"^^ . _:genid5514 . _:genid5514 . _:genid5514 . _:genid5514 "Quantification of cross-linked peptides in complex protein mixtures"^^ . _:genid5514 "PSI:MS"^^ . . . "Thermo Scientific Orbitrap ID-X mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers."^^ . "MS"^^ . "MS:1003112"^^ . "Orbitrap ID-X"^^ . _:genid5515 . _:genid5515 . _:genid5515 . _:genid5515 "Thermo Scientific Orbitrap ID-X mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers."^^ . _:genid5515 "PSI:MS"^^ . . . _:genid5516 . _:genid5516 . _:genid5516 . _:genid5516 . "The OpenMS ConsesusID tool posterior error probability"^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003113"^^ . "OpenMS:ConsensusID PEP"^^ . _:genid5517 . _:genid5517 . _:genid5517 . _:genid5517 "The OpenMS ConsesusID tool posterior error probability"^^ . _:genid5517 "PSI:MS"^^ . _:genid5518 . _:genid5518 . _:genid5518 . _:genid5518 "value-type:xsd:double"^^ . _:genid5518 "The allowed value-type for this CV term."^^ . . . _:genid5519 . _:genid5519 . _:genid5519 . _:genid5519 . "The score of the best PSM selected by the underlying identification tool"^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003114"^^ . "OpenMS:Best PSM Score"^^ . _:genid5520 . _:genid5520 . _:genid5520 . _:genid5520 "The score of the best PSM selected by the underlying identification tool"^^ . _:genid5520 "PSI:MS"^^ . _:genid5521 . _:genid5521 . _:genid5521 . _:genid5521 "value-type:xsd:double"^^ . _:genid5521 "The allowed value-type for this CV term."^^ . . . _:genid5522 . _:genid5522 . _:genid5522 . _:genid5522 . "The OpenMS Target-decoy q-values at PSM level"^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003115"^^ . "OpenMS:Target-decoy PSM q-value"^^ . _:genid5523 . _:genid5523 . _:genid5523 . _:genid5523 "The OpenMS Target-decoy q-values at PSM level"^^ . _:genid5523 "PSI:MS"^^ . _:genid5524 . _:genid5524 . _:genid5524 . _:genid5524 "value-type:xsd:double"^^ . _:genid5524 "The allowed value-type for this CV term."^^ . . . _:genid5525 . _:genid5525 . _:genid5525 . _:genid5525 . "The OpenMS Target-decoy q-values at peptide sequence level"^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003116"^^ . "OpenMS:Target-decoy peptide q-value"^^ . _:genid5526 . _:genid5526 . _:genid5526 . _:genid5526 "The OpenMS Target-decoy q-values at peptide sequence level"^^ . _:genid5526 "PSI:MS"^^ . _:genid5527 . _:genid5527 . _:genid5527 . _:genid5527 "value-type:xsd:double"^^ . _:genid5527 "The allowed value-type for this CV term."^^ . . . _:genid5528 . _:genid5528 . _:genid5528 . _:genid5528 . "The OpenMS Target-decoy q-values at protein level"^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003117"^^ . "OpenMS:Target-decoy protein q-value"^^ . _:genid5529 . _:genid5529 . _:genid5529 . _:genid5529 "The OpenMS Target-decoy q-values at protein level"^^ . _:genid5529 "PSI:MS"^^ . _:genid5530 . _:genid5530 . _:genid5530 . _:genid5530 "value-type:xsd:double"^^ . _:genid5530 "The allowed value-type for this CV term."^^ . . . . "A Method for Efficient High-Confidence Protein Inference. The tool is part of the OpenMS framework"^^ . "MS"^^ . "MS:1003118"^^ . "EPIFANY"^^ . _:genid5531 . _:genid5531 . _:genid5531 . _:genid5531 "A Method for Efficient High-Confidence Protein Inference. The tool is part of the OpenMS framework"^^ . _:genid5531 "PSI:MS"^^ . . . _:genid5532 . _:genid5532 . _:genid5532 . _:genid5532 . "Protein Posterior probability calculated by EPIFANY protein inference algorithm"^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003119"^^ . "EPIFANY:Protein posterior probability"^^ . _:genid5533 . _:genid5533 . _:genid5533 . _:genid5533 "Protein Posterior probability calculated by EPIFANY protein inference algorithm"^^ . _:genid5533 "PSI:MS"^^ . _:genid5534 . _:genid5534 . _:genid5534 . _:genid5534 "value-type:xsd:double"^^ . _:genid5534 "The allowed value-type for this CV term."^^ . . . _:genid5535 . _:genid5535 . _:genid5535 . _:genid5535 . "The data type LFQ intensity produced by OpenMS."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003120"^^ . "OpenMS:LFQ intensity"^^ . _:genid5536 . _:genid5536 . _:genid5536 . _:genid5536 "The data type LFQ intensity produced by OpenMS."^^ . _:genid5536 "PSI:MS"^^ . _:genid5537 . _:genid5537 . _:genid5537 . _:genid5537 "value-type:xsd:double"^^ . _:genid5537 "The allowed value-type for this CV term."^^ . . . _:genid5538 . _:genid5538 . _:genid5538 . _:genid5538 . "The data type LFQ spectral count produced by OpenMS."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003121"^^ . "OpenMS:LFQ spectral count"^^ . _:genid5539 . _:genid5539 . _:genid5539 . _:genid5539 "The data type LFQ spectral count produced by OpenMS."^^ . _:genid5539 "PSI:MS"^^ . _:genid5540 . _:genid5540 . _:genid5540 . _:genid5540 "value-type:xsd:double"^^ . _:genid5540 "The allowed value-type for this CV term."^^ . . . "Bruker Daltonics' rapiflex: MALDI TOF/TOF."^^ . "MS"^^ . "MS:1003122"^^ . "rapifleX"^^ . _:genid5541 . _:genid5541 . _:genid5541 . _:genid5541 "Bruker Daltonics' rapiflex: MALDI TOF/TOF."^^ . _:genid5541 "PSI:MS"^^ . . . "Bruker Daltonics timsTOF series"^^ . "MS"^^ . "MS:1003123"^^ . "Bruker Daltonics timsTOF series"^^ . _:genid5542 . _:genid5542 . _:genid5542 . _:genid5542 "Bruker Daltonics timsTOF series"^^ . _:genid5542 "PSI:MS"^^ . . . "Bruker Daltonics' timsTOF fleX"^^ . "MS"^^ . "MS:1003124"^^ . "timsTOF fleX"^^ . _:genid5543 . _:genid5543 . _:genid5543 . _:genid5543 "Bruker Daltonics' timsTOF fleX"^^ . _:genid5543 "PSI:MS"^^ . . . . _:genid5544 . _:genid5544 . _:genid5544 . _:genid5544 . _:genid5545 . _:genid5545 . _:genid5545 . _:genid5545 . "ProSight spectrum-level Q-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003125"^^ . "ProSight:spectral Q-value"^^ . _:genid5546 . _:genid5546 . _:genid5546 . _:genid5546 "ProSight spectrum-level Q-value."^^ . _:genid5546 "PSI:MS"^^ . _:genid5547 . _:genid5547 . _:genid5547 . _:genid5547 "value-type:xsd:double"^^ . _:genid5547 "The allowed value-type for this CV term."^^ . . . _:genid5548 . _:genid5548 . _:genid5548 . _:genid5548 . _:genid5549 . _:genid5549 . _:genid5549 . _:genid5549 . "ProSight spectrum-level P-score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003126"^^ . "ProSight:spectral P-score"^^ . _:genid5550 . _:genid5550 . _:genid5550 . _:genid5550 "ProSight spectrum-level P-score."^^ . _:genid5550 "PSI:MS"^^ . _:genid5551 . _:genid5551 . _:genid5551 . _:genid5551 "value-type:xsd:double"^^ . _:genid5551 "The allowed value-type for this CV term."^^ . . . . _:genid5552 . _:genid5552 . _:genid5552 . _:genid5552 . _:genid5553 . _:genid5553 . _:genid5553 . _:genid5553 . "ProSight spectrum-level E-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003127"^^ . "ProSight:spectral E-value"^^ . _:genid5554 . _:genid5554 . _:genid5554 . _:genid5554 "ProSight spectrum-level E-value."^^ . _:genid5554 "PSI:MS"^^ . _:genid5555 . _:genid5555 . _:genid5555 . _:genid5555 "value-type:xsd:double"^^ . _:genid5555 "The allowed value-type for this CV term."^^ . . . _:genid5556 . _:genid5556 . _:genid5556 . _:genid5556 . _:genid5557 . _:genid5557 . _:genid5557 . _:genid5557 . "ProSight spectrum-level C-score."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003128"^^ . "ProSight:spectral C-score"^^ . _:genid5558 . _:genid5558 . _:genid5558 . _:genid5558 "ProSight spectrum-level C-score."^^ . _:genid5558 "PSI:MS"^^ . _:genid5559 . _:genid5559 . _:genid5559 . _:genid5559 "value-type:xsd:double"^^ . _:genid5559 "The allowed value-type for this CV term."^^ . . . _:genid5560 . _:genid5560 . _:genid5560 . _:genid5560 . _:genid5561 . _:genid5561 . _:genid5561 . _:genid5561 . _:genid5562 . _:genid5562 . _:genid5562 . _:genid5562 . "Estimation of the Q-value for proteoforms."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003129"^^ . "proteoform-level Q-value"^^ . _:genid5563 . _:genid5563 . _:genid5563 . _:genid5563 "Estimation of the Q-value for proteoforms."^^ . _:genid5563 "PSI:MS"^^ . _:genid5564 . _:genid5564 . _:genid5564 . _:genid5564 "value-type:xsd:double"^^ . _:genid5564 "The allowed value-type for this CV term."^^ . . . _:genid5565 . _:genid5565 . _:genid5565 . _:genid5565 . _:genid5566 . _:genid5566 . _:genid5566 . _:genid5566 . "ProSight proteoform-level Q-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003130"^^ . "ProSight:proteoform Q-value"^^ . _:genid5567 . _:genid5567 . _:genid5567 . _:genid5567 "ProSight proteoform-level Q-value."^^ . _:genid5567 "PSI:MS"^^ . _:genid5568 . _:genid5568 . _:genid5568 . _:genid5568 "value-type:xsd:double"^^ . _:genid5568 "The allowed value-type for this CV term."^^ . . . "Isoform level information."^^ . "MS"^^ . "MS:1003131"^^ . "isoform-level identification attribute"^^ . _:genid5569 . _:genid5569 . _:genid5569 . _:genid5569 "Isoform level information."^^ . _:genid5569 "PSI:MS"^^ . . . "Identification confidence metric for a isoform."^^ . "MS"^^ . "MS:1003132"^^ . "isoform-level identification statistic"^^ . _:genid5570 . _:genid5570 . _:genid5570 . _:genid5570 "Identification confidence metric for a isoform."^^ . _:genid5570 "PSI:MS"^^ . . . _:genid5571 . _:genid5571 . _:genid5571 . _:genid5571 . _:genid5572 . _:genid5572 . _:genid5572 . _:genid5572 . "Estimation of the Q-value for isoforms."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003133"^^ . "isoform-level Q-value"^^ . _:genid5573 . _:genid5573 . _:genid5573 . _:genid5573 "Estimation of the Q-value for isoforms."^^ . _:genid5573 "PSI:MS"^^ . _:genid5574 . _:genid5574 . _:genid5574 . _:genid5574 "value-type:xsd:double"^^ . _:genid5574 "The allowed value-type for this CV term."^^ . . . _:genid5575 . _:genid5575 . _:genid5575 . _:genid5575 . _:genid5576 . _:genid5576 . _:genid5576 . _:genid5576 . "ProSight isoform-level Q-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003134"^^ . "ProSight:isoform Q-value"^^ . _:genid5577 . _:genid5577 . _:genid5577 . _:genid5577 "ProSight isoform-level Q-value."^^ . _:genid5577 "PSI:MS"^^ . _:genid5578 . _:genid5578 . _:genid5578 . _:genid5578 "value-type:xsd:double"^^ . _:genid5578 "The allowed value-type for this CV term."^^ . . . _:genid5579 . _:genid5579 . _:genid5579 . _:genid5579 . _:genid5580 . _:genid5580 . _:genid5580 . _:genid5580 . "ProSight protein-level Q-value."^^ . "value-type:xsd:double"^^ . "MS"^^ . "MS:1003135"^^ . "ProSight:protein Q-value"^^ . _:genid5581 . _:genid5581 . _:genid5581 . _:genid5581 "ProSight protein-level Q-value."^^ . _:genid5581 "PSI:MS"^^ . _:genid5582 . _:genid5582 . _:genid5582 . _:genid5582 "value-type:xsd:double"^^ . _:genid5582 "The allowed value-type for this CV term."^^ . . . "Search engine input parameters specific to ProSight."^^ . "MS"^^ . "MS:1003136"^^ . "ProSight input parameter"^^ . _:genid5583 . _:genid5583 . _:genid5583 . _:genid5583 "Search engine input parameters specific to ProSight."^^ . _:genid5583 "PSI:MS"^^ . . . "Search engine input parameters specific to TDPortal."^^ . "MS"^^ . "MS:1003137"^^ . "TDPortal input parameter"^^ . _:genid5584 . _:genid5584 . _:genid5584 . _:genid5584 "Search engine input parameters specific to TDPortal."^^ . _:genid5584 "PSI:MS"^^ . . . . _:genid5585 . _:genid5585 . _:genid5585 . _:genid5585 . "If true, runs delta m mode in ProSight."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1003138"^^ . "ProSight:Run delta m mode"^^ . _:genid5586 . _:genid5586 . _:genid5586 . _:genid5586 "If true, runs delta m mode in ProSight."^^ . _:genid5586 "PSI:MS"^^ . _:genid5587 . _:genid5587 . _:genid5587 . _:genid5587 "value-type:xsd:boolean"^^ . _:genid5587 "The allowed value-type for this CV term."^^ . . . . _:genid5588 . _:genid5588 . _:genid5588 . _:genid5588 . "If true, runs Subsequence Search mode in ProSight."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1003139"^^ . "ProSight:Run Subsequence Search mode"^^ . _:genid5589 . _:genid5589 . _:genid5589 . _:genid5589 "If true, runs Subsequence Search mode in ProSight."^^ . _:genid5589 "PSI:MS"^^ . _:genid5590 . _:genid5590 . _:genid5590 . _:genid5590 "value-type:xsd:boolean"^^ . _:genid5590 "The allowed value-type for this CV term."^^ . . . . _:genid5591 . _:genid5591 . _:genid5591 . _:genid5591 . "If true, runs Annotated Proteoform Search mode in ProSight."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "MS:1003140"^^ . "ProSight:Run Annotated Proteoform Search mode"^^ . _:genid5592 . _:genid5592 . _:genid5592 . _:genid5592 "If true, runs Annotated Proteoform Search mode in ProSight."^^ . _:genid5592 "PSI:MS"^^ . _:genid5593 . _:genid5593 . _:genid5593 . _:genid5593 "value-type:xsd:boolean"^^ . _:genid5593 "The allowed value-type for this CV term."^^ . . . "ProSight: Database search engine for top-down proteomics."^^ . "MS"^^ . "MS:1003141"^^ . "ProSight"^^ . _:genid5594 . _:genid5594 . _:genid5594 . _:genid5594 "ProSight: Database search engine for top-down proteomics."^^ . _:genid5594 "PSI:MS"^^ . . . "TDPortal: Database search engine for top-down proteomics."^^ . "MS"^^ . "MS:1003142"^^ . "TDPortal"^^ . _:genid5595 . _:genid5595 . _:genid5595 . _:genid5595 "TDPortal: Database search engine for top-down proteomics."^^ . _:genid5595 "PSI:MS"^^ . . . _:genid5596 . _:genid5596 . _:genid5596 . _:genid5596 . "A data array of mass values."^^ . "binary-data-type:MS:1000521"^^ . "binary-data-type:MS:1000523"^^ . "MS"^^ . "MS:1003143"^^ . "mass array"^^ . _:genid5597 . _:genid5597 . _:genid5597 . _:genid5597 "A data array of mass values."^^ . _:genid5597 "PSI:MS"^^ . _:genid5598 . _:genid5598 . _:genid5598 . _:genid5598 "binary-data-type:MS:1000521"^^ . _:genid5598 "32-bit float"^^ . _:genid5599 . _:genid5599 . _:genid5599 . _:genid5599 "binary-data-type:MS:1000523"^^ . _:genid5599 "64-bit float"^^ . . . "SCIEX Triple Quad 7500."^^ . "MS"^^ . "MS:1003144"^^ . "Triple Quad 7500"^^ . _:genid5600 . _:genid5600 . _:genid5600 . _:genid5600 "SCIEX Triple Quad 7500."^^ . _:genid5600 "PSI:MS"^^ . . . "Cross-platform software to convert Thermo RAW files to a number of open formats."^^ . "MS"^^ . "MS:1003145"^^ . "ThermoRawFileParser"^^ . _:genid5601 . _:genid5601 . _:genid5601 . _:genid5601 "Cross-platform software to convert Thermo RAW files to a number of open formats."^^ . _:genid5601 "DOI:10.1021/acs.jproteome.9b00328"^^ . _:genid5601 "PMID:31755270"^^ . . . "Python module that helps handling various proteomics data analysis tasks."^^ . "MS"^^ . "MS:1003146"^^ . "pyteomics"^^ . _:genid5602 . _:genid5602 . _:genid5602 . _:genid5602 "Python module that helps handling various proteomics data analysis tasks."^^ . _:genid5602 "DOI:10.1021/acs.jproteome.8b00717"^^ . _:genid5602 "PMID:30576148"^^ . . . _:genid5603 . _:genid5603 . _:genid5603 . _:genid5603 . "Probability that one mass modification has been correctly localized to a specific residue as computed by PTMProphet."^^ . "MS"^^ . "MS:1003147"^^ . "PTMProphet probability"^^ . _:genid5604 . _:genid5604 . _:genid5604 . _:genid5604 "Probability that one mass modification has been correctly localized to a specific residue as computed by PTMProphet."^^ . _:genid5604 "DOI:10.1021/acs.jproteome.9b00205"^^ . _:genid5604 "PMID:31290668"^^ . . . _:genid5605 . _:genid5605 . _:genid5605 . _:genid5605 . "PSM-specific average of the m best site probabilities over all potential sites where m is the number of modifications of a specific type, as computed by PTMProphet."^^ . "MS"^^ . "MS:1003148"^^ . "PTMProphet mean best probability"^^ . _:genid5606 . _:genid5606 . _:genid5606 . _:genid5606 "PSM-specific average of the m best site probabilities over all potential sites where m is the number of modifications of a specific type, as computed by PTMProphet."^^ . _:genid5606 "DOI:10.1021/acs.jproteome.9b00205"^^ . _:genid5606 "PMID:31290668"^^ . . . _:genid5607 . _:genid5607 . _:genid5607 . _:genid5607 . " PTMProphet-computed PSM-specific normalized (0.0 \u2013 1.0) measure of information content across all modifications of a specific type."^^ . "MS"^^ . "MS:1003149"^^ . "PTMProphet normalized information content"^^ . _:genid5608 . _:genid5608 . _:genid5608 . _:genid5608 " PTMProphet-computed PSM-specific normalized (0.0 \u2013 1.0) measure of information content across all modifications of a specific type."^^ . _:genid5608 "DOI:10.1021/acs.jproteome.9b00205"^^ . _:genid5608 "PMID:31290668"^^ . . . _:genid5609 . _:genid5609 . _:genid5609 . _:genid5609 . " PTMProphet-computed PSM-specific measure of information content per modification type ranging from 0 to m, where m is the number of modifications of a specific type."^^ . "MS"^^ . "MS:1003150"^^ . "PTMProphet information content"^^ . _:genid5610 . _:genid5610 . _:genid5610 . _:genid5610 " PTMProphet-computed PSM-specific measure of information content per modification type ranging from 0 to m, where m is the number of modifications of a specific type."^^ . _:genid5610 "DOI:10.1021/acs.jproteome.9b00205"^^ . _:genid5610 "PMID:31290668"^^ . . . _:genid5611 . _:genid5611 . _:genid5611 . _:genid5611 . "SHA-256 (member of Secure Hash Algorithm-2 family) is a cryptographic hash function designed by the National Security Agency (NSA) and published by the NIST as a U. S. government standard. It is also used to verify file integrity."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003151"^^ . "SHA-256"^^ . _:genid5612 . _:genid5612 . _:genid5612 . _:genid5612 "SHA-256 (member of Secure Hash Algorithm-2 family) is a cryptographic hash function designed by the National Security Agency (NSA) and published by the NIST as a U. S. government standard. It is also used to verify file integrity."^^ . _:genid5612 "PSI:MS"^^ . _:genid5613 . _:genid5613 . _:genid5613 . _:genid5613 "value-type:xsd:string"^^ . _:genid5613 "The allowed value-type for this CV term."^^ . . . "Shimadzu Scientific Instruments GCMS-QP2010SE."^^ . "MS"^^ . "MS:1003152"^^ . "GCMS-QP2010SE"^^ . _:genid5614 . _:genid5614 . _:genid5614 . _:genid5614 "Shimadzu Scientific Instruments GCMS-QP2010SE."^^ . _:genid5614 "PSI:MS"^^ . . . _:genid5615 . _:genid5615 . _:genid5615 . _:genid5615 . _:genid5616 . _:genid5616 . _:genid5616 . _:genid5616 . _:genid5617 . _:genid5617 . _:genid5617 . _:genid5617 . "Array of raw ion mobility values from a drift time device, reported in seconds (or milliseconds), corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1003153"^^ . "raw ion mobility drift time array"^^ . _:genid5618 . _:genid5618 . _:genid5618 . _:genid5618 "Array of raw ion mobility values from a drift time device, reported in seconds (or milliseconds), corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . _:genid5618 "PSI:MS"^^ . _:genid5619 . _:genid5619 . _:genid5619 . _:genid5619 "value-type:xsd:float"^^ . _:genid5619 "The allowed value-type for this CV term."^^ . . . _:genid5620 . _:genid5620 . _:genid5620 . _:genid5620 . _:genid5621 . _:genid5621 . _:genid5621 . _:genid5621 . _:genid5622 . _:genid5622 . _:genid5622 . _:genid5622 . "Array of ion mobility values (K or K0) based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, as an average property of an analyte post peak-detection, weighted charge state reduction, and/or adduct aggregation, corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1003154"^^ . "deconvoluted ion mobility array"^^ . _:genid5623 . _:genid5623 . _:genid5623 . _:genid5623 "Array of ion mobility values (K or K0) based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, as an average property of an analyte post peak-detection, weighted charge state reduction, and/or adduct aggregation, corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . _:genid5623 "PSI:MS"^^ . _:genid5624 . _:genid5624 . _:genid5624 . _:genid5624 "value-type:xsd:float"^^ . _:genid5624 "The allowed value-type for this CV term."^^ . . . _:genid5625 . _:genid5625 . _:genid5625 . _:genid5625 . _:genid5626 . _:genid5626 . _:genid5626 . _:genid5626 . "Array of ion mobility values based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, normalized for the local conditions and reported in volt-second per square centimeter, as an average property of an analyte post peak-detection, weighted charge state reduction, and/or adduct aggregation, corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1003155"^^ . "deconvoluted inverse reduced ion mobility array"^^ . _:genid5627 . _:genid5627 . _:genid5627 . _:genid5627 "Array of ion mobility values based on ion separation in gaseous phase due to different ion mobilities under an electric field based on ion size, m/z and shape, normalized for the local conditions and reported in volt-second per square centimeter, as an average property of an analyte post peak-detection, weighted charge state reduction, and/or adduct aggregation, corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . _:genid5627 "PSI:MS"^^ . _:genid5628 . _:genid5628 . _:genid5628 . _:genid5628 "value-type:xsd:float"^^ . _:genid5628 "The allowed value-type for this CV term."^^ . . . _:genid5629 . _:genid5629 . _:genid5629 . _:genid5629 . _:genid5630 . _:genid5630 . _:genid5630 . _:genid5630 . _:genid5631 . _:genid5631 . _:genid5631 . _:genid5631 . "Array of mean ion mobility values from a drift time device, reported in seconds (or milliseconds), as an average property of an analyte post peak-detection, weighted charge state reduction, and/or adduct aggregation, corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1003156"^^ . "deconvoluted ion mobility drift time array"^^ . _:genid5632 . _:genid5632 . _:genid5632 . _:genid5632 "Array of mean ion mobility values from a drift time device, reported in seconds (or milliseconds), as an average property of an analyte post peak-detection, weighted charge state reduction, and/or adduct aggregation, corresponding to a spectrum of individual peaks encoded with an m/z array."^^ . _:genid5632 "PSI:MS"^^ . _:genid5633 . _:genid5633 . _:genid5633 . _:genid5633 "value-type:xsd:float"^^ . _:genid5633 "The allowed value-type for this CV term."^^ . . . _:genid5634 . _:genid5634 . _:genid5634 . _:genid5634 . _:genid5635 . _:genid5635 . _:genid5635 . _:genid5635 . "Array of m/z values representing the lower bound m/z of the quadrupole position at each point in the spectrum."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1003157"^^ . "scanning quadrupole position lower bound m/z array"^^ . _:genid5636 . _:genid5636 . _:genid5636 . _:genid5636 "Array of m/z values representing the lower bound m/z of the quadrupole position at each point in the spectrum."^^ . _:genid5636 "PSI:MS"^^ . _:genid5637 . _:genid5637 . _:genid5637 . _:genid5637 "value-type:xsd:float"^^ . _:genid5637 "The allowed value-type for this CV term."^^ . . . _:genid5638 . _:genid5638 . _:genid5638 . _:genid5638 . _:genid5639 . _:genid5639 . _:genid5639 . _:genid5639 . "Array of m/z values representing the upper bound m/z of the quadrupole position at each point in the spectrum."^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1003158"^^ . "scanning quadrupole position upper bound m/z array"^^ . _:genid5640 . _:genid5640 . _:genid5640 . _:genid5640 "Array of m/z values representing the upper bound m/z of the quadrupole position at each point in the spectrum."^^ . _:genid5640 "PSI:MS"^^ . _:genid5641 . _:genid5641 . _:genid5641 . _:genid5641 "value-type:xsd:float"^^ . _:genid5641 "The allowed value-type for this CV term."^^ . . . "Indicates an acquisition mode in which the isolation window is a full range, rather than a subset of the full range."^^ . "MS"^^ . "MS:1003159"^^ . "isolation window full range"^^ . _:genid5642 . _:genid5642 . _:genid5642 . _:genid5642 "Indicates an acquisition mode in which the isolation window is a full range, rather than a subset of the full range."^^ . _:genid5642 "PSI:MS"^^ . . . "Proteomics Standards Initiative mzQC format for quality control data."^^ . "MS"^^ . "MS:1003160"^^ . "mzQC format"^^ . _:genid5643 . _:genid5643 . _:genid5643 . _:genid5643 "Proteomics Standards Initiative mzQC format for quality control data."^^ . _:genid5643 "PSI:MS"^^ . . . "Grouping term for quality control data formats."^^ . "MS"^^ . "MS:1003161"^^ . "quality control data format"^^ . _:genid5644 . _:genid5644 . _:genid5644 . _:genid5644 "Grouping term for quality control data formats."^^ . _:genid5644 "PSI:MS"^^ . . . "Proteomics (PTX) - QualityControl (QC) software for QC report generation and visualization."^^ . "PTXQC"^^ . "MS"^^ . "MS:1003162"^^ . "PTX-QC"^^ . _:genid5645 . _:genid5645 . _:genid5645 . _:genid5645 "Proteomics (PTX) - QualityControl (QC) software for QC report generation and visualization."^^ . _:genid5645 "DOI:10.1021/acs.jproteome.5b00780"^^ . _:genid5645 "PMID:26653327"^^ . _:genid5645 "https://github.com/cbielow/PTXQC/"^^ . . . _:genid5646 . _:genid5646 . _:genid5646 . _:genid5646 . "The set of analyte identifiers that compose an interpretation of a spectrum."^^ . "MS"^^ . "MS:1003163"^^ . "analyte mixture members"^^ . _:genid5647 . _:genid5647 . _:genid5647 . _:genid5647 "The set of analyte identifiers that compose an interpretation of a spectrum."^^ . _:genid5647 "PSI:PI"^^ . . . "QuaMeter IDFree software for QC metric calculation."^^ . "QuaMeter"^^ . "MS"^^ . "MS:1003164"^^ . "QuaMeter IDFree"^^ . _:genid5648 . _:genid5648 . _:genid5648 . _:genid5648 "QuaMeter IDFree software for QC metric calculation."^^ . _:genid5648 "DOI:10.1021/ac4034455"^^ . _:genid5648 "PMID:24494671"^^ . . . "iMonDB software to extract, store, and manage mass spectrometry instrument parameters from raw data files."^^ . "MS"^^ . "MS:1003165"^^ . "iMonDB"^^ . _:genid5649 . _:genid5649 . _:genid5649 . _:genid5649 "iMonDB software to extract, store, and manage mass spectrometry instrument parameters from raw data files."^^ . _:genid5649 "DOI:10.1021/acs.jproteome.5b00127"^^ . _:genid5649 "PMID:25798920"^^ . _:genid5649 "https://github.com/bittremieux/iMonDB"^^ . . . _:genid5650 . _:genid5650 . _:genid5650 . _:genid5650 . "Fraction of intensity summed from all peaks that can be attributed to expected fragments of the analyte, divided by the intensity summed from all peaks in the spectrum"^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1003166"^^ . "assigned intensity fraction"^^ . _:genid5651 . _:genid5651 . _:genid5651 . _:genid5651 "Fraction of intensity summed from all peaks that can be attributed to expected fragments of the analyte, divided by the intensity summed from all peaks in the spectrum"^^ . _:genid5651 "PSI:PI"^^ . _:genid5652 . _:genid5652 . _:genid5652 . _:genid5652 "value-type:xsd:float"^^ . _:genid5652 "The allowed value-type for this CV term."^^ . . . _:genid5653 . _:genid5653 . _:genid5653 . _:genid5653 . "The fraction of total intensities in the isolation window in the previous round of MS (i.e. the MSn-1 scan) that can be assigned to this identified analyte"^^ . "value-type:xsd:float"^^ . "MS"^^ . "MS:1003167"^^ . "MSn-1 isolation window precursor purity"^^ . _:genid5654 . _:genid5654 . _:genid5654 . _:genid5654 "The fraction of total intensities in the isolation window in the previous round of MS (i.e. the MSn-1 scan) that can be assigned to this identified analyte"^^ . _:genid5654 "PSI:PI"^^ . _:genid5655 . _:genid5655 . _:genid5655 . _:genid5655 "value-type:xsd:float"^^ . _:genid5655 "The allowed value-type for this CV term."^^ . . . _:genid5656 . _:genid5656 . _:genid5656 . _:genid5656 . "A free-text string providing additional information of the library entry not encoded otherwise, usually for human use and not parsed by software tools."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003168"^^ . "library entry comment"^^ . _:genid5657 . _:genid5657 . _:genid5657 . _:genid5657 "A free-text string providing additional information of the library entry not encoded otherwise, usually for human use and not parsed by software tools."^^ . _:genid5657 "PSI:PI"^^ . _:genid5658 . _:genid5658 . _:genid5658 . _:genid5658 "value-type:xsd:string"^^ . _:genid5658 "The allowed value-type for this CV term."^^ . . . _:genid5659 . _:genid5659 . _:genid5659 . _:genid5659 . "Sequence string describing the amino acids and mass modifications of a peptidoform using the PSI ProForma notation"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003169"^^ . "proforma peptidoform sequence"^^ . _:genid5660 . _:genid5660 . _:genid5660 . _:genid5660 "Sequence string describing the amino acids and mass modifications of a peptidoform using the PSI ProForma notation"^^ . _:genid5660 "PSI:PI"^^ . _:genid5661 . _:genid5661 . _:genid5661 . _:genid5661 "value-type:xsd:string"^^ . _:genid5661 "The allowed value-type for this CV term."^^ . . _:genid5662 . _:genid5662 . _:genid5662 . _:genid5662 . "A collection of spectra organized by their originating analyte, compiled deliberately for use in MS data analysis in future experiments"^^ . "MS"^^ . "MS:1003170"^^ . "spectral library"^^ . _:genid5663 . _:genid5663 . _:genid5663 . _:genid5663 "A collection of spectra organized by their originating analyte, compiled deliberately for use in MS data analysis in future experiments"^^ . _:genid5663 "PSI:PI"^^ . . _:genid5664 . _:genid5664 . _:genid5664 . _:genid5664 . "An attribute of a spectral library"^^ . "MS"^^ . "MS:1003171"^^ . "spectral library attribute"^^ . _:genid5665 . _:genid5665 . _:genid5665 . _:genid5665 "An attribute of a spectral library"^^ . _:genid5665 "PSI:PI"^^ . . _:genid5666 . _:genid5666 . _:genid5666 . _:genid5666 . "An entry in a spectral library representing a spectrum"^^ . "MS"^^ . "MS:1003172"^^ . "library entry"^^ . _:genid5667 . _:genid5667 . _:genid5667 . _:genid5667 "An entry in a spectral library representing a spectrum"^^ . _:genid5667 "PSI:PI"^^ . . . _:genid5668 . _:genid5668 . _:genid5668 . _:genid5668 . _:genid5669 . _:genid5669 . _:genid5669 . _:genid5669 . "An attribute that takes on a numeric value"^^ . "value-type:xsd:float"^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1003173"^^ . "numeric attribute"^^ . _:genid5670 . _:genid5670 . _:genid5670 . _:genid5670 "An attribute that takes on a numeric value"^^ . _:genid5670 "PSI:PI"^^ . _:genid5671 . _:genid5671 . _:genid5671 . _:genid5671 "value-type:xsd:float"^^ . _:genid5671 "The allowed value-type for this CV term."^^ . _:genid5672 . _:genid5672 . _:genid5672 . _:genid5672 "value-type:xsd:int"^^ . _:genid5672 "The allowed value-type for this CV term."^^ . . _:genid5673 . _:genid5673 . _:genid5673 . _:genid5673 . _:genid5674 . _:genid5674 . _:genid5674 . _:genid5674 . _:genid5675 . _:genid5675 . _:genid5675 . _:genid5675 . "The maximum value for this attribute"^^ . "value-type:xsd:float"^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1003174"^^ . "attribute maximum"^^ . _:genid5676 . _:genid5676 . _:genid5676 . _:genid5676 "The maximum value for this attribute"^^ . _:genid5676 "PSI:PI"^^ . _:genid5677 . _:genid5677 . _:genid5677 . _:genid5677 "value-type:xsd:float"^^ . _:genid5677 "The allowed value-type for this CV term."^^ . _:genid5678 . _:genid5678 . _:genid5678 . _:genid5678 "value-type:xsd:int"^^ . _:genid5678 "The allowed value-type for this CV term."^^ . . _:genid5679 . _:genid5679 . _:genid5679 . _:genid5679 . _:genid5680 . _:genid5680 . _:genid5680 . _:genid5680 . _:genid5681 . _:genid5681 . _:genid5681 . _:genid5681 . "The minimum value for this attribute"^^ . "value-type:xsd:float"^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1003175"^^ . "attribute minimum"^^ . _:genid5682 . _:genid5682 . _:genid5682 . _:genid5682 "The minimum value for this attribute"^^ . _:genid5682 "PSI:PI"^^ . _:genid5683 . _:genid5683 . _:genid5683 . _:genid5683 "value-type:xsd:float"^^ . _:genid5683 "The allowed value-type for this CV term."^^ . _:genid5684 . _:genid5684 . _:genid5684 . _:genid5684 "value-type:xsd:int"^^ . _:genid5684 "The allowed value-type for this CV term."^^ . . _:genid5685 . _:genid5685 . _:genid5685 . _:genid5685 . _:genid5686 . _:genid5686 . _:genid5686 . _:genid5686 . _:genid5687 . _:genid5687 . _:genid5687 . _:genid5687 . "The arithmetic mean value for this attribute"^^ . "value-type:xsd:float"^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1003176"^^ . "attribute mean"^^ . _:genid5688 . _:genid5688 . _:genid5688 . _:genid5688 "The arithmetic mean value for this attribute"^^ . _:genid5688 "PSI:PI"^^ . _:genid5689 . _:genid5689 . _:genid5689 . _:genid5689 "value-type:xsd:float"^^ . _:genid5689 "The allowed value-type for this CV term."^^ . _:genid5690 . _:genid5690 . _:genid5690 . _:genid5690 "value-type:xsd:int"^^ . _:genid5690 "The allowed value-type for this CV term."^^ . . _:genid5691 . _:genid5691 . _:genid5691 . _:genid5691 . _:genid5692 . _:genid5692 . _:genid5692 . _:genid5692 . _:genid5693 . _:genid5693 . _:genid5693 . _:genid5693 . "The standard deviation (exact value of population, or estimate from sample) of this attribute"^^ . "value-type:xsd:float"^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1003177"^^ . "attribute standard deviation"^^ . _:genid5694 . _:genid5694 . _:genid5694 . _:genid5694 "The standard deviation (exact value of population, or estimate from sample) of this attribute"^^ . _:genid5694 "PSI:PI"^^ . _:genid5695 . _:genid5695 . _:genid5695 . _:genid5695 "value-type:xsd:float"^^ . _:genid5695 "The allowed value-type for this CV term."^^ . _:genid5696 . _:genid5696 . _:genid5696 . _:genid5696 "value-type:xsd:int"^^ . _:genid5696 "The allowed value-type for this CV term."^^ . . _:genid5697 . _:genid5697 . _:genid5697 . _:genid5697 . _:genid5698 . _:genid5698 . _:genid5698 . _:genid5698 . _:genid5699 . _:genid5699 . _:genid5699 . _:genid5699 . "The coefficient of variation of this attribute, i.e. standard deviation divided by the mean"^^ . "value-type:xsd:float"^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1003178"^^ . "attribute coefficient of variation"^^ . _:genid5700 . _:genid5700 . _:genid5700 . _:genid5700 "The coefficient of variation of this attribute, i.e. standard deviation divided by the mean"^^ . _:genid5700 "PSI:PI"^^ . _:genid5701 . _:genid5701 . _:genid5701 . _:genid5701 "value-type:xsd:float"^^ . _:genid5701 "The allowed value-type for this CV term."^^ . _:genid5702 . _:genid5702 . _:genid5702 . _:genid5702 "value-type:xsd:int"^^ . _:genid5702 "The allowed value-type for this CV term."^^ . . _:genid5703 . _:genid5703 . _:genid5703 . _:genid5703 . _:genid5704 . _:genid5704 . _:genid5704 . _:genid5704 . _:genid5705 . _:genid5705 . _:genid5705 . _:genid5705 . "The most appropriate summary value of the attribute, usually but not necessarily the mean"^^ . "value-type:xsd:float"^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1003179"^^ . "attribute summary value"^^ . _:genid5706 . _:genid5706 . _:genid5706 . _:genid5706 "The most appropriate summary value of the attribute, usually but not necessarily the mean"^^ . _:genid5706 "PSI:PI"^^ . _:genid5707 . _:genid5707 . _:genid5707 . _:genid5707 "value-type:xsd:float"^^ . _:genid5707 "The allowed value-type for this CV term."^^ . _:genid5708 . _:genid5708 . _:genid5708 . _:genid5708 "value-type:xsd:int"^^ . _:genid5708 "The allowed value-type for this CV term."^^ . . _:genid5709 . _:genid5709 . _:genid5709 . _:genid5709 . _:genid5710 . _:genid5710 . _:genid5710 . _:genid5710 . _:genid5711 . _:genid5711 . _:genid5711 . _:genid5711 . "The median of this attribute"^^ . "value-type:xsd:float"^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1003180"^^ . "attribute median"^^ . _:genid5712 . _:genid5712 . _:genid5712 . _:genid5712 "The median of this attribute"^^ . _:genid5712 "PSI:PI"^^ . _:genid5713 . _:genid5713 . _:genid5713 . _:genid5713 "value-type:xsd:float"^^ . _:genid5713 "The allowed value-type for this CV term."^^ . _:genid5714 . _:genid5714 . _:genid5714 . _:genid5714 "value-type:xsd:int"^^ . _:genid5714 "The allowed value-type for this CV term."^^ . . . "Combination of two or more dissociation methods that are known by a special term."^^ . "MS"^^ . "MS:1003181"^^ . "combined dissociation method"^^ . _:genid5715 . _:genid5715 . _:genid5715 . _:genid5715 "Combination of two or more dissociation methods that are known by a special term."^^ . _:genid5715 "PSI:PI"^^ . . . "Dissociation process combining electron-transfer dissociation (ETD) and collision-induced dissociation (CID)."^^ . "ETciD"^^ . "MS"^^ . "MS:1003182"^^ . "electron-transfer/collision-induced dissociation"^^ . _:genid5716 . _:genid5716 . _:genid5716 . _:genid5716 "Dissociation process combining electron-transfer dissociation (ETD) and collision-induced dissociation (CID)."^^ . _:genid5716 "PSI:PI"^^ . . . "Waters oa-ToF based Synapt XS."^^ . "MS"^^ . "MS:1003183"^^ . "Synapt XS"^^ . _:genid5717 . _:genid5717 . _:genid5717 . _:genid5717 "Waters oa-ToF based Synapt XS."^^ . _:genid5717 "PSI:PI"^^ . . . "Waters oa-ToF based SELECT SERIES Cyclic IMS."^^ . "MS"^^ . "MS:1003184"^^ . "SELECT SERIES Cyclic IMS"^^ . _:genid5718 . _:genid5718 . _:genid5718 . _:genid5718 "Waters oa-ToF based SELECT SERIES Cyclic IMS."^^ . _:genid5718 "PSI:PI"^^ . . . "Waters oa-ToF based SELECT SERIES MRT."^^ . "MS"^^ . "MS:1003185"^^ . "SELECT SERIES MRT"^^ . _:genid5719 . _:genid5719 . _:genid5719 . _:genid5719 "Waters oa-ToF based SELECT SERIES MRT."^^ . _:genid5719 "PSI:PI"^^ . . . _:genid5720 . _:genid5720 . _:genid5720 . _:genid5720 . "Version number of the [PSI] library format specification"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003186"^^ . "library format version"^^ . _:genid5721 . _:genid5721 . _:genid5721 . _:genid5721 "Version number of the [PSI] library format specification"^^ . _:genid5721 "PSI:PI"^^ . _:genid5722 . _:genid5722 . _:genid5722 . _:genid5722 "value-type:xsd:string"^^ . _:genid5722 "The allowed value-type for this CV term."^^ . . . _:genid5723 . _:genid5723 . _:genid5723 . _:genid5723 . "Short identifier for the library for easy reference, preferably but not necessarily globally unique"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003187"^^ . "library identifier"^^ . _:genid5724 . _:genid5724 . _:genid5724 . _:genid5724 "Short identifier for the library for easy reference, preferably but not necessarily globally unique"^^ . _:genid5724 "PSI:PI"^^ . _:genid5725 . _:genid5725 . _:genid5725 . _:genid5725 "value-type:xsd:string"^^ . _:genid5725 "The allowed value-type for this CV term."^^ . . . _:genid5726 . _:genid5726 . _:genid5726 . _:genid5726 . "A short name identifying the library to potential users. The same name may refer to multiple versions of the same continually updated library."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003188"^^ . "library name"^^ . _:genid5727 . _:genid5727 . _:genid5727 . _:genid5727 "A short name identifying the library to potential users. The same name may refer to multiple versions of the same continually updated library."^^ . _:genid5727 "PSI:PI"^^ . _:genid5728 . _:genid5728 . _:genid5728 . _:genid5728 "value-type:xsd:string"^^ . _:genid5728 "The allowed value-type for this CV term."^^ . . . _:genid5729 . _:genid5729 . _:genid5729 . _:genid5729 . "Extended free-text description of the library"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003189"^^ . "library description"^^ . _:genid5730 . _:genid5730 . _:genid5730 . _:genid5730 "Extended free-text description of the library"^^ . _:genid5730 "PSI:PI"^^ . _:genid5731 . _:genid5731 . _:genid5731 . _:genid5731 "value-type:xsd:string"^^ . _:genid5731 "The allowed value-type for this CV term."^^ . . . _:genid5732 . _:genid5732 . _:genid5732 . _:genid5732 . "Version number of the library, usually refering to a certain release of a continually updated library "^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003190"^^ . "library version"^^ . _:genid5733 . _:genid5733 . _:genid5733 . _:genid5733 "Version number of the library, usually refering to a certain release of a continually updated library "^^ . _:genid5733 "PSI:PI"^^ . _:genid5734 . _:genid5734 . _:genid5734 . _:genid5734 "value-type:xsd:string"^^ . _:genid5734 "The allowed value-type for this CV term."^^ . . . _:genid5735 . _:genid5735 . _:genid5735 . _:genid5735 . "URI or URL that uniquely identifies the library"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003191"^^ . "library URI"^^ . _:genid5736 . _:genid5736 . _:genid5736 . _:genid5736 "URI or URL that uniquely identifies the library"^^ . _:genid5736 "PSI:PI"^^ . _:genid5737 . _:genid5737 . _:genid5737 . _:genid5737 "value-type:xsd:string"^^ . _:genid5737 "The allowed value-type for this CV term."^^ . . . "A spectrum deliberately introduced into a spectral library that necessarily produces incorrect identifications when matched, for the purpose of error control in spectral library searching"^^ . "MS"^^ . "MS:1003192"^^ . "decoy spectrum"^^ . _:genid5738 . _:genid5738 . _:genid5738 . _:genid5738 "A spectrum deliberately introduced into a spectral library that necessarily produces incorrect identifications when matched, for the purpose of error control in spectral library searching"^^ . _:genid5738 "PSI:PI"^^ . . . "A decoy spectrum generated from a real spectrum, by shuffling the amino acid sequence of the identification of the real spectrum, followed by re-positioning annotated peaks to match the shuffled sequence."^^ . "MS"^^ . "MS:1003193"^^ . "shuffle-and-reposition decoy spectrum"^^ . _:genid5739 . _:genid5739 . _:genid5739 . _:genid5739 "A decoy spectrum generated from a real spectrum, by shuffling the amino acid sequence of the identification of the real spectrum, followed by re-positioning annotated peaks to match the shuffled sequence."^^ . _:genid5739 "PSI:PI"^^ . . . "A decoy spectrum generated from a real spectrum, by changing the precursor m/z value of the real spectrum."^^ . "MS"^^ . "MS:1003194"^^ . "precursor shift decoy spectrum"^^ . _:genid5740 . _:genid5740 . _:genid5740 . _:genid5740 "A decoy spectrum generated from a real spectrum, by changing the precursor m/z value of the real spectrum."^^ . _:genid5740 "PSI:PI"^^ . . . "A decoy spectrum that is either a real spectrum of an unnatural peptidoform (e.g. a synthetic peptide that cannot be found in nature), or an artificial spectrum predicted for such unnatural peptidoform"^^ . "MS"^^ . "MS:1003195"^^ . "unnatural peptidoform decoy spectrum"^^ . _:genid5741 . _:genid5741 . _:genid5741 . _:genid5741 "A decoy spectrum that is either a real spectrum of an unnatural peptidoform (e.g. a synthetic peptide that cannot be found in nature), or an artificial spectrum predicted for such unnatural peptidoform"^^ . _:genid5741 "PSI:PI"^^ . . . "A decoy spectrum that is a real spectrum of a naturally occuring peptidoform of an unrelated species that should not be found in the sample"^^ . "MS"^^ . "MS:1003196"^^ . "unrelated species decoy spectrum"^^ . _:genid5742 . _:genid5742 . _:genid5742 . _:genid5742 "A decoy spectrum that is a real spectrum of a naturally occuring peptidoform of an unrelated species that should not be found in the sample"^^ . _:genid5742 "PSI:PI"^^ . . . _:genid5743 . _:genid5743 . _:genid5743 . _:genid5743 . "URI of the license controlling use of the library (e.g. https://creativecommons.org/publicdomain/zero/1.0/)"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003197"^^ . "license URI"^^ . _:genid5744 . _:genid5744 . _:genid5744 . _:genid5744 "URI of the license controlling use of the library (e.g. https://creativecommons.org/publicdomain/zero/1.0/)"^^ . _:genid5744 "PSI:PI"^^ . _:genid5745 . _:genid5745 . _:genid5745 . _:genid5745 "value-type:xsd:string"^^ . _:genid5745 "The allowed value-type for this CV term."^^ . . . _:genid5746 . _:genid5746 . _:genid5746 . _:genid5746 . "Notice of statutorily prescribed form that informs users of the underlying claim to copyright ownership in a published work"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003198"^^ . "copyright notice"^^ . _:genid5747 . _:genid5747 . _:genid5747 . _:genid5747 "Notice of statutorily prescribed form that informs users of the underlying claim to copyright ownership in a published work"^^ . _:genid5747 "PSI:PI"^^ . _:genid5748 . _:genid5748 . _:genid5748 . _:genid5748 "value-type:xsd:string"^^ . _:genid5748 "The allowed value-type for this CV term."^^ . . . _:genid5749 . _:genid5749 . _:genid5749 . _:genid5749 . "Extended free-text description of the difference from the previous version"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003199"^^ . "change log"^^ . _:genid5750 . _:genid5750 . _:genid5750 . _:genid5750 "Extended free-text description of the difference from the previous version"^^ . _:genid5750 "PSI:PI"^^ . _:genid5751 . _:genid5751 . _:genid5751 . _:genid5751 "value-type:xsd:string"^^ . _:genid5751 "The allowed value-type for this CV term."^^ . . . _:genid5752 . _:genid5752 . _:genid5752 . _:genid5752 . "Version number of the software package used for library creation"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003200"^^ . "software version"^^ . _:genid5753 . _:genid5753 . _:genid5753 . _:genid5753 "Version number of the software package used for library creation"^^ . _:genid5753 "PSI:PI"^^ . _:genid5754 . _:genid5754 . _:genid5754 . _:genid5754 "value-type:xsd:string"^^ . _:genid5754 "The allowed value-type for this CV term."^^ . . . "Abstract term containing several different types of provenance information"^^ . "MS"^^ . "MS:1003201"^^ . "library provenance attribute"^^ . _:genid5755 . _:genid5755 . _:genid5755 . _:genid5755 "Abstract term containing several different types of provenance information"^^ . _:genid5755 "PSI:PI"^^ . . . _:genid5756 . _:genid5756 . _:genid5756 . _:genid5756 . "Spectrum data file from which (at least) a subset of spectra were extracted from. Should use USI notation mzspec:PXDxxxx:msRunName if possible, or a URI if USI notation is not possible."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003203"^^ . "constituent spectrum file"^^ . _:genid5757 . _:genid5757 . _:genid5757 . _:genid5757 "Spectrum data file from which (at least) a subset of spectra were extracted from. Should use USI notation mzspec:PXDxxxx:msRunName if possible, or a URI if USI notation is not possible."^^ . _:genid5757 "PSI:PI"^^ . _:genid5758 . _:genid5758 . _:genid5758 . _:genid5758 "value-type:xsd:string"^^ . _:genid5758 "The allowed value-type for this CV term."^^ . . . _:genid5759 . _:genid5759 . _:genid5759 . _:genid5759 . "Identification file where (at least) a subset of identifications were extracted from. Should use a URI if possible"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003204"^^ . "constituent identification file"^^ . _:genid5760 . _:genid5760 . _:genid5760 . _:genid5760 "Identification file where (at least) a subset of identifications were extracted from. Should use a URI if possible"^^ . _:genid5760 "PSI:PI"^^ . _:genid5761 . _:genid5761 . _:genid5761 . _:genid5761 "value-type:xsd:string"^^ . _:genid5761 "The allowed value-type for this CV term."^^ . . . _:genid5762 . _:genid5762 . _:genid5762 . _:genid5762 . "Source library URI which(at least) a subset of spectra were extracted from."^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003205"^^ . "constituent library file"^^ . _:genid5763 . _:genid5763 . _:genid5763 . _:genid5763 "Source library URI which(at least) a subset of spectra were extracted from."^^ . _:genid5763 "PSI:PI"^^ . _:genid5764 . _:genid5764 . _:genid5764 . _:genid5764 "value-type:xsd:string"^^ . _:genid5764 "The allowed value-type for this CV term."^^ . . . _:genid5765 . _:genid5765 . _:genid5765 . _:genid5765 . "String of logging information generated when the library was constructed from its constituent files. Multiple lines should be separated with escaped \n"^^ . "value-type:xsd:string"^^ . "MS"^^ . "MS:1003206"^^ . "library creation log"^^ . _:genid5766 . _:genid5766 . _:genid5766 . _:genid5766 "String of logging information generated when the library was constructed from its constituent files. Multiple lines should be separated with escaped \n"^^ . _:genid5766 "PSI:PI"^^ . _:genid5767 . _:genid5767 . _:genid5767 . _:genid5767 "value-type:xsd:string"^^ . _:genid5767 "The allowed value-type for this CV term."^^ . . . . "Library creation software"^^ . "MS"^^ . "MS:1003207"^^ . "library creation software"^^ . _:genid5768 . _:genid5768 . _:genid5768 . _:genid5768 "Library creation software"^^ . _:genid5768 "PSI:MS"^^ . . . _:genid5769 . _:genid5769 . _:genid5769 . _:genid5769 . _:genid5770 . _:genid5770 . _:genid5770 . _:genid5770 . "The measured or inferred m/z (as reported by the mass spectrometer acquisition software or post-processing software) of the monoisotopic peak of the precursor ion based on the MSn-1 spectrum."^^ . "MS"^^ . "MS:1003208"^^ . "experimental precursor monoisotopic m/z"^^ . _:genid5771 . _:genid5771 . _:genid5771 . _:genid5771 "The measured or inferred m/z (as reported by the mass spectrometer acquisition software or post-processing software) of the monoisotopic peak of the precursor ion based on the MSn-1 spectrum."^^ . _:genid5771 "PSI:MS"^^ . . . _:genid5772 . _:genid5772 . _:genid5772 . _:genid5772 . _:genid5773 . _:genid5773 . _:genid5773 . _:genid5773 . _:genid5774 . _:genid5774 . _:genid5774 . _:genid5774 . "The measured monoisotopic m/z (as reported by the mass spectrometer acquisition software or post-processing software) minus the theoretical monoisotopic m/z of the analyte assigned to the spectrum."^^ . "MS"^^ . "MS:1003209"^^ . "monoisotopic m/z deviation"^^ . _:genid5775 . _:genid5775 . _:genid5775 . _:genid5775 "The measured monoisotopic m/z (as reported by the mass spectrometer acquisition software or post-processing software) minus the theoretical monoisotopic m/z of the analyte assigned to the spectrum."^^ . _:genid5775 "PSI:MS"^^ . . . _:genid5776 . _:genid5776 . _:genid5776 . _:genid5776 . _:genid5777 . _:genid5777 . _:genid5777 . _:genid5777 . _:genid5778 . _:genid5778 . _:genid5778 . _:genid5778 . "The measured average m/z (as reported by the mass spectrometer acquisition software or post-processing software) minus the theoretical average m/z of the analyte assigned to the spectrum."^^ . "MS"^^ . "MS:1003210"^^ . "average m/z deviation"^^ . _:genid5779 . _:genid5779 . _:genid5779 . _:genid5779 "The measured average m/z (as reported by the mass spectrometer acquisition software or post-processing software) minus the theoretical average m/z of the analyte assigned to the spectrum."^^ . _:genid5779 "PSI:MS"^^ . . . "A set of spectrum-related attributes that is shared by a subset of spectra within the same spectral library"^^ . "MS"^^ . "MS:1003211"^^ . "library spectrum attribute set"^^ . _:genid5780 . _:genid5780 . _:genid5780 . _:genid5780 "A set of spectrum-related attributes that is shared by a subset of spectra within the same spectral library"^^ . _:genid5780 "PSI:PI"^^ . . _:genid5781 . _:genid5781 . _:genid5781 . _:genid5781 . _:genid5782 . _:genid5782 . _:genid5782 . _:genid5782 . _:genid5783 . _:genid5783 . _:genid5783 . _:genid5783 . _:genid5784 . _:genid5784 . _:genid5784 . _:genid5784 . "A name to refer to a library attribute set"^^ . "MS"^^ . "MS:1003212"^^ . "library attribute set name"^^ . _:genid5785 . _:genid5785 . _:genid5785 . _:genid5785 "A name to refer to a library attribute set"^^ . _:genid5785 "PSI:PI"^^ . . . . "Specific aspect of a mass spectrometer method by which mass ranges are selected and possibly dissociated."^^ . "MS"^^ . "MS:1003213"^^ . "mass spectrometry acquisition method"^^ . _:genid5786 . _:genid5786 . _:genid5786 . _:genid5786 "Specific aspect of a mass spectrometer method by which mass ranges are selected and possibly dissociated."^^ . _:genid5786 "PSI:MS"^^ . . . "Specific aspect of a mass spectrometer method by which mass ranges are selected and possibly dissociated."^^ . "MS"^^ . "MS:1003214"^^ . "mass spectrometry acquisition method aspect"^^ . _:genid5787 . _:genid5787 . _:genid5787 . _:genid5787 "Specific aspect of a mass spectrometer method by which mass ranges are selected and possibly dissociated."^^ . _:genid5787 "PSI:MS"^^ . . . "Mass spectrometer data acquisition method wherein mass selection for fragmentation is configured according to a pre-determined program, rather than based on any detected precursor ions."^^ . "DIA"^^ . "MS"^^ . "MS:1003215"^^ . "data-independent acquisition"^^ . _:genid5788 . _:genid5788 . _:genid5788 . _:genid5788 "Mass spectrometer data acquisition method wherein mass selection for fragmentation is configured according to a pre-determined program, rather than based on any detected precursor ions."^^ . _:genid5788 "PSI:MS"^^ . . . "Mass spectrometer data acquisition method wherein all precursor ions of which the instrument is capable are fragmented at once.."^^ . "MS"^^ . "MS:1003216"^^ . "dissociation of full mass range"^^ . _:genid5789 . _:genid5789 . _:genid5789 . _:genid5789 "Mass spectrometer data acquisition method wherein all precursor ions of which the instrument is capable are fragmented at once.."^^ . _:genid5789 "PSI:MS"^^ . . . "Mass spectrometer data acquisition method wherein ????."^^ . "MS"^^ . "MS:1003217"^^ . "dissociation of scanning quadrupole across a specified mass range"^^ . _:genid5790 . _:genid5790 . _:genid5790 . _:genid5790 "Mass spectrometer data acquisition method wherein ????."^^ . _:genid5790 "PSI:MS"^^ . . . "Mass spectrometer data acquisition method wherein a series of limited mass range fragmentation selection windows are preconfigured."^^ . "MS"^^ . "MS:1003218"^^ . "dissociation of sequential mass ranges"^^ . _:genid5791 . _:genid5791 . _:genid5791 . _:genid5791 "Mass spectrometer data acquisition method wherein a series of limited mass range fragmentation selection windows are preconfigured."^^ . _:genid5791 "PSI:MS"^^ . . . "Mass spectrometer data acquisition method wherein precursor ions are separated by their ion mobility properties prior to measurement."^^ . "MS"^^ . "MS:1003219"^^ . "ion mobility separation"^^ . _:genid5792 . _:genid5792 . _:genid5792 . _:genid5792 "Mass spectrometer data acquisition method wherein precursor ions are separated by their ion mobility properties prior to measurement."^^ . _:genid5792 "PSI:MS"^^ . . . "Data processing action of merging of the measurements of potentially multiple adducts into a single representation that is independent of the small ion that adds charge to a larger molecule."^^ . "MS"^^ . "MS:1003220"^^ . "adduct deconvolution"^^ . _:genid5793 . _:genid5793 . _:genid5793 . _:genid5793 "Data processing action of merging of the measurements of potentially multiple adducts into a single representation that is independent of the small ion that adds charge to a larger molecule."^^ . _:genid5793 "PSI:MS"^^ . . . "Mass spectrometer data acquisition method wherein MSn spectra are triggered based on the m/z of precursor ions detected in the same run."^^ . "DDA"^^ . "MS"^^ . "MS:1003221"^^ . "data-dependent acquisition"^^ . _:genid5794 . _:genid5794 . _:genid5794 . _:genid5794 "Mass spectrometer data acquisition method wherein MSn spectra are triggered based on the m/z of precursor ions detected in the same run."^^ . _:genid5794 "PSI:MS"^^ . . . "Data processing action of merging multiple ion peaks acquired at different ion mobility steps into a single mass spectrum representing a single analyte."^^ . "MS"^^ . "MS:1003222"^^ . "ion mobility deconvolution"^^ . _:genid5795 . _:genid5795 . _:genid5795 . _:genid5795 "Data processing action of merging multiple ion peaks acquired at different ion mobility steps into a single mass spectrum representing a single analyte."^^ . _:genid5795 "PSI:MS"^^ . . . . . "Data independent mass spectrometer acquisition method wherein a preconfigured sequence of mass ranges are fragmented. Examples of such an approach include SWATH-MS, FT-ARM, HRM, and PAcIFIC."^^ . "MS"^^ . "MS:1003224"^^ . "data independent acquisition from dissociation of sequential mass ranges"^^ . _:genid5796 . _:genid5796 . _:genid5796 . _:genid5796 "Data independent mass spectrometer acquisition method wherein a preconfigured sequence of mass ranges are fragmented. Examples of such an approach include SWATH-MS, FT-ARM, HRM, and PAcIFIC."^^ . _:genid5796 "PSI:MS"^^ . . . . . . "Data independent mass spectrometer acquisition method wherein a preconfigured sequence of mass ranges are fragmented after being separated by ion mobility. An example of such an approach is Bruker diaPASEF."^^ . "MS"^^ . "MS:1003225"^^ . "data independent acquisition from dissociation of sequential mass ranges after ion mobility separation"^^ . _:genid5797 . _:genid5797 . _:genid5797 . _:genid5797 "Data independent mass spectrometer acquisition method wherein a preconfigured sequence of mass ranges are fragmented after being separated by ion mobility. An example of such an approach is Bruker diaPASEF."^^ . _:genid5797 "PSI:MS"^^ . . . . . . "Data independent mass spectrometer acquisition method wherein the full mass range is fragmented after being separated by ion mobility. Examples of such an approach include HDMS^E and IMS-AIF."^^ . "MS"^^ . "MS:1003226"^^ . "data independent acquisition from dissociation of full mass range after ion mobility separation"^^ . _:genid5798 . _:genid5798 . _:genid5798 . _:genid5798 "Data independent mass spectrometer acquisition method wherein the full mass range is fragmented after being separated by ion mobility. Examples of such an approach include HDMS^E and IMS-AIF."^^ . _:genid5798 "PSI:MS"^^ . . . . . . "Data independent mass spectrometer acquisition method wherein the full mass range is fragmented. Examples of such an approach include MS^E, AIF, and bbCID."^^ . "MS"^^ . "MS:1003227"^^ . "data independent acquisition from dissociation of full mass range"^^ . _:genid5799 . _:genid5799 . _:genid5799 . _:genid5799 "Data independent mass spectrometer acquisition method wherein the full mass range is fragmented. Examples of such an approach include MS^E, AIF, and bbCID."^^ . _:genid5799 "PSI:MS"^^ . . . . . "Data independent mass spectrometer acquisition method wherein ???. An example of such an approach is Waters SONAR."^^ . "MS"^^ . "MS:1003228"^^ . "data independent acquisition from dissociation of scanning quadrupole across mass range"^^ . _:genid5800 . _:genid5800 . _:genid5800 . _:genid5800 "Data independent mass spectrometer acquisition method wherein ???. An example of such an approach is Waters SONAR."^^ . _:genid5800 "PSI:MS"^^ . . . "Bruker Daltonics' timsTOF."^^ . "MS"^^ . "MS:1003229"^^ . "timsTOF"^^ . _:genid5801 . _:genid5801 . _:genid5801 . _:genid5801 "Bruker Daltonics' timsTOF."^^ . _:genid5801 "PSI:MS"^^ . . . "Bruker Daltonics' timsTOF Pro 2."^^ . "MS"^^ . "MS:1003230"^^ . "timsTOF Pro 2"^^ . _:genid5802 . _:genid5802 . _:genid5802 . _:genid5802 "Bruker Daltonics' timsTOF Pro 2."^^ . _:genid5802 "PSI:MS"^^ . . . "Bruker Daltonics' timsTOF SCP."^^ . "MS"^^ . "MS:1003231"^^ . "timsTOF SCP"^^ . _:genid5803 . _:genid5803 . _:genid5803 . _:genid5803 "Bruker Daltonics' timsTOF SCP."^^ . _:genid5803 "PSI:MS"^^ . . . . . "comprehensive infrastructure to organize, curate and share a multi- instrument spectral library for metabolomics data annotation developed and distributed by the French National infrastructure in metabolomics and fluxomics (MetaboHUB)."^^ . "MS"^^ . "MS:1003232"^^ . "PeakForest"^^ . _:genid5804 . _:genid5804 . _:genid5804 . _:genid5804 "comprehensive infrastructure to organize, curate and share a multi- instrument spectral library for metabolomics data annotation developed and distributed by the French National infrastructure in metabolomics and fluxomics (MetaboHUB)."^^ . _:genid5804 "https://peakforest.org/"^^ . . _:genid5805 . _:genid5805 . _:genid5805 . _:genid5805 . "An attribute that describes information about an entry in a spectral library"^^ . "MS"^^ . "MS:1003234"^^ . "library entry attribute"^^ . _:genid5806 . _:genid5806 . _:genid5806 . _:genid5806 "An attribute that describes information about an entry in a spectral library"^^ . _:genid5806 "PSI:PI"^^ . . . "The ionization of analytes from a piece of paper by applying a solvent and voltage."^^ . "MS"^^ . "MS:1003235"^^ . "paper spray ionization"^^ . _:genid5807 . _:genid5807 . _:genid5807 . _:genid5807 "The ionization of analytes from a piece of paper by applying a solvent and voltage."^^ . _:genid5807 "PSI:MS"^^ . . . "An ordinal number uniquely identifying a spectrum in a library. Library entry keys should start at 1. Library entry keys SHOULD not change if entries are re-ordered or removed from a library."^^ . "MS"^^ . "MS:1003237"^^ . "library entry key"^^ . _:genid5808 . _:genid5808 . _:genid5808 . _:genid5808 "An ordinal number uniquely identifying a spectrum in a library. Library entry keys should start at 1. Library entry keys SHOULD not change if entries are re-ordered or removed from a library."^^ . _:genid5808 "PSI:PI"^^ . . . "A set of analyte-related attributes that is shared by a subset of spectra within the same spectral library"^^ . "MS"^^ . "MS:1003238"^^ . "library analyte attribute set"^^ . _:genid5809 . _:genid5809 . _:genid5809 . _:genid5809 "A set of analyte-related attributes that is shared by a subset of spectra within the same spectral library"^^ . _:genid5809 "PSI:PI"^^ . . . "A set of interpretation-related attributes that is shared by a subset of spectra within the same spectral library"^^ . "MS"^^ . "MS:1003239"^^ . "library interpretation attribute set"^^ . _:genid5810 . _:genid5810 . _:genid5810 . _:genid5810 "A set of interpretation-related attributes that is shared by a subset of spectra within the same spectral library"^^ . _:genid5810 "PSI:PI"^^ . . . "A mathematical transformation applied to peak intensities, for example, as a way to modify the weight put on each peak when computing spectral match scores"^^ . "MS"^^ . "MS:1003240"^^ . "peak intensity transform"^^ . _:genid5811 . _:genid5811 . _:genid5811 . _:genid5811 "A mathematical transformation applied to peak intensities, for example, as a way to modify the weight put on each peak when computing spectral match scores"^^ . _:genid5811 "PSI:PI"^^ . . . "A mathematical transformation applied to peak intensities, in which peak intensities are replaced by their square roots"^^ . "MS"^^ . "MS:1003241"^^ . "square root transform"^^ . _:genid5812 . _:genid5812 . _:genid5812 . _:genid5812 "A mathematical transformation applied to peak intensities, in which peak intensities are replaced by their square roots"^^ . _:genid5812 "PSI:PI"^^ . . . "A mathematical transformation applied to peak intensities, in which peak intensities are replaced by their ranks"^^ . "MS"^^ . "MS:1003242"^^ . "rank transform"^^ . _:genid5813 . _:genid5813 . _:genid5813 . _:genid5813 "A mathematical transformation applied to peak intensities, in which peak intensities are replaced by their ranks"^^ . _:genid5813 "PSI:PI"^^ . . . _:genid5814 . _:genid5814 . _:genid5814 . _:genid5814 . "The theoretical mass of the adduct ion (e.g. for a singly-charged protonated peptide ion, this value would be the neutral peptide molecule\u2019s mass plus the mass of a proton)"^^ . "MS"^^ . "MS:1003243"^^ . "adduct ion mass"^^ . _:genid5815 . _:genid5815 . _:genid5815 . _:genid5815 "The theoretical mass of the adduct ion (e.g. for a singly-charged protonated peptide ion, this value would be the neutral peptide molecule\u2019s mass plus the mass of a proton)"^^ . _:genid5815 "PSI:PI"^^ . . . _:genid5816 . _:genid5816 . _:genid5816 . _:genid5816 . "Accession number (e.g. in PeptideAtlas) of the peptide sequence"^^ . "MS"^^ . "MS:1003244"^^ . "peptide accession number"^^ . _:genid5817 . _:genid5817 . _:genid5817 . _:genid5817 "Accession number (e.g. in PeptideAtlas) of the peptide sequence"^^ . _:genid5817 "PSI:PI"^^ . . . "Thermo Scientific Q Exactive UHMR (Ultra High Mass Range) Hybrid Quadrupole Orbitrap MS."^^ . "MS"^^ . "MS:1003245"^^ . "Q Exactive UHMR"^^ . _:genid5818 . _:genid5818 . _:genid5818 . _:genid5818 "Thermo Scientific Q Exactive UHMR (Ultra High Mass Range) Hybrid Quadrupole Orbitrap MS."^^ . _:genid5818 "PSI:PI"^^ . . . "Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple UV photons."^^ . "UVPD"^^ . "MS"^^ . "MS:1003246"^^ . "ultraviolet photodissociation"^^ . _:genid5819 . _:genid5819 . _:genid5819 . _:genid5819 "Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple UV photons."^^ . _:genid5819 "PSI:MS"^^ . . . "A process to fragment ions in a mass spectrometer by inducing fragmentation of anions (e.g. peptides or proteins) by transferring electrons to a radical-cation."^^ . "NETD"^^ . "MS"^^ . "MS:1003247"^^ . "negative electron transfer dissociation"^^ . _:genid5820 . _:genid5820 . _:genid5820 . _:genid5820 "A process to fragment ions in a mass spectrometer by inducing fragmentation of anions (e.g. peptides or proteins) by transferring electrons to a radical-cation."^^ . _:genid5820 "DOI:10.1016/j.jasms.2005.01.015"^^ . _:genid5820 "PSI:MS"^^ . . . "Process to transfer a proton from a hydronium ion (H3O+) to neutral analyte, leading to a protonated analyte, which typically does not lead to fragmentation."^^ . "PTR"^^ . "MS"^^ . "MS:1003248"^^ . "proton transfer reaction"^^ . _:genid5821 . _:genid5821 . _:genid5821 . _:genid5821 "Process to transfer a proton from a hydronium ion (H3O+) to neutral analyte, leading to a protonated analyte, which typically does not lead to fragmentation."^^ . _:genid5821 "DOI:10.1002/mas.20048"^^ . _:genid5821 "PSI:MS"^^ . . . "Process to transfer one or more protons from a multiply charged cation (peptide or protein ion) to a proton acceptor anion or neutral basic compound, thereby reducing the charge of the original analyte."^^ . "PTCR"^^ . "MS"^^ . "MS:1003249"^^ . "proton transfer charge reduction"^^ . _:genid5822 . _:genid5822 . _:genid5822 . _:genid5822 "Process to transfer one or more protons from a multiply charged cation (peptide or protein ion) to a proton acceptor anion or neutral basic compound, thereby reducing the charge of the original analyte."^^ . _:genid5822 "PSI:MS"^^ . . . _:genid5823 . _:genid5823 . _:genid5823 . _:genid5823 . "The number of peptidoforms that pass the threshold to be considered identified with sufficient confidence."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1003250"^^ . "count of identified peptidoforms"^^ . _:genid5824 . _:genid5824 . _:genid5824 . _:genid5824 "The number of peptidoforms that pass the threshold to be considered identified with sufficient confidence."^^ . _:genid5824 "PSI:PI"^^ . _:genid5825 . _:genid5825 . _:genid5825 . _:genid5825 "value-type:xsd:int"^^ . _:genid5825 "The allowed value-type for this CV term."^^ . . . _:genid5826 . _:genid5826 . _:genid5826 . _:genid5826 . "The number of spectra that pass the threshold to be considered identified with sufficient confidence."^^ . "value-type:xsd:int"^^ . "MS"^^ . "MS:1003251"^^ . "count of identified spectra"^^ . _:genid5827 . _:genid5827 . _:genid5827 . _:genid5827 "The number of spectra that pass the threshold to be considered identified with sufficient confidence."^^ . _:genid5827 "PSI:PI"^^ . _:genid5828 . _:genid5828 . _:genid5828 . _:genid5828 "value-type:xsd:int"^^ . _:genid5828 "The allowed value-type for this CV term."^^ . . _:genid5829 . _:genid5829 . _:genid5829 . _:genid5829 . "PSI Quality Control controlled vocabulary term."^^ . "MS"^^ . "MS:4000000"^^ . "PSI-MS CV Quality Control Vocabulary"^^ . _:genid5830 . _:genid5830 . _:genid5830 . _:genid5830 "PSI Quality Control controlled vocabulary term."^^ . _:genid5830 "PSI:MS"^^ . . _:genid5831 . _:genid5831 . _:genid5831 . _:genid5831 . "Parent term for QC metrics, each metric MUST have this as an ancestor in its is_a relations."^^ . "MS"^^ . "MS:4000001"^^ . "QC metric"^^ . _:genid5832 . _:genid5832 . _:genid5832 . _:genid5832 "Parent term for QC metrics, each metric MUST have this as an ancestor in its is_a relations."^^ . _:genid5832 "PSI:MS"^^ . . _:genid5833 . _:genid5833 . _:genid5833 . _:genid5833 . "The QC metric type describes what type the corresponding metric is. Possible types are single value, n-tuple, table, or matrix."^^ . "MS"^^ . "MS:4000002"^^ . "QC metric value type"^^ . _:genid5834 . _:genid5834 . _:genid5834 . _:genid5834 "The QC metric type describes what type the corresponding metric is. Possible types are single value, n-tuple, table, or matrix."^^ . _:genid5834 "PSI:MS"^^ . . . "Metrics consisting of a single value. The value must have a unit (e.g. UO:0000221 ! dalton or UO:0000187 ! percent), and optionally a type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value)."^^ . "MS"^^ . "MS:4000003"^^ . "single value"^^ . _:genid5835 . _:genid5835 . _:genid5835 . _:genid5835 "Metrics consisting of a single value. The value must have a unit (e.g. UO:0000221 ! dalton or UO:0000187 ! percent), and optionally a type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value)."^^ . _:genid5835 "PSI:MS"^^ . . . "Metrics consisting of multiple values, with the number of values implicitly specified by length of the JSON array (e.g. length 4 for quartiles). All values must be given a unit (e.g. UO:0000221 ! dalton or UO:0000187 ! percent), and optionally a type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value). All values in the tuple must have the same unit and type (if applicable)."^^ . "MS"^^ . "MS:4000004"^^ . "n-tuple"^^ . _:genid5836 . _:genid5836 . _:genid5836 . _:genid5836 "Metrics consisting of multiple values, with the number of values implicitly specified by length of the JSON array (e.g. length 4 for quartiles). All values must be given a unit (e.g. UO:0000221 ! dalton or UO:0000187 ! percent), and optionally a type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value). All values in the tuple must have the same unit and type (if applicable)."^^ . _:genid5836 "PSI:MS"^^ . . . "Metrics consisting of a table or data frame. The values of the table may have different types in each column (in contrast to a matrix). Each column must have a unit (identical for all entries of this column) and may have a value type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value)."^^ . "MS"^^ . "MS:4000005"^^ . "The actual structure of the table is defined in the mzQC specification document. In short: it must have at least one column, and MAY have optional columns."^^ . "table"^^ . _:genid5837 . _:genid5837 . _:genid5837 . _:genid5837 "Metrics consisting of a table or data frame. The values of the table may have different types in each column (in contrast to a matrix). Each column must have a unit (identical for all entries of this column) and may have a value type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value)."^^ . _:genid5837 "PSI:MS"^^ . . . "A matrix is a rectangular array of values of the same type (in contrast to a table). All values must be given a unit (e.g. UO:0000221 ! dalton or UO:0000187 ! percent), and optionally a type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value). All values in the matrix must have the same unit and type (if applicable)."^^ . "MS"^^ . "MS:4000006"^^ . "The actual structure of the matrix is defined in the mzQC specification document."^^ . "matrix"^^ . _:genid5838 . _:genid5838 . _:genid5838 . _:genid5838 "A matrix is a rectangular array of values of the same type (in contrast to a table). All values must be given a unit (e.g. UO:0000221 ! dalton or UO:0000187 ! percent), and optionally a type (e.g. STATO:0000574 ! median or MS:1002354 ! PSM-level q-value). All values in the matrix must have the same unit and type (if applicable)."^^ . _:genid5838 "PSI:MS"^^ . . _:genid5839 . _:genid5839 . _:genid5839 . _:genid5839 . "Categorization of the QC metric."^^ . "MS"^^ . "MS:4000007"^^ . "QC metric category"^^ . _:genid5840 . _:genid5840 . _:genid5840 . _:genid5840 "Categorization of the QC metric."^^ . _:genid5840 "PSI:MS"^^ . . . "QC metric based on identification results."^^ . "MS"^^ . "MS:4000008"^^ . "ID based metric"^^ . _:genid5841 . _:genid5841 . _:genid5841 . _:genid5841 "QC metric based on identification results."^^ . _:genid5841 "PSI:MS"^^ . . . "QC metric not based on identification results."^^ . "MS"^^ . "MS:4000009"^^ . "ID free metric"^^ . _:genid5842 . _:genid5842 . _:genid5842 . _:genid5842 "QC metric not based on identification results."^^ . _:genid5842 "PSI:MS"^^ . . . "QC metric based on quantification results."^^ . "MS"^^ . "MS:4000010"^^ . "quantification based metric"^^ . _:genid5843 . _:genid5843 . _:genid5843 . _:genid5843 "QC metric based on quantification results."^^ . _:genid5843 "PSI:MS"^^ . . . "QC metric calculated from a single run (e.g. one .raw file)."^^ . "MS"^^ . "MS:4000012"^^ . "single run based metric"^^ . _:genid5844 . _:genid5844 . _:genid5844 . _:genid5844 "QC metric calculated from a single run (e.g. one .raw file)."^^ . _:genid5844 "PSI:MS"^^ . . . "QC metric calculated from multiple runs (e.g. multiple .raw files)."^^ . "MS"^^ . "MS:4000013"^^ . "multiple runs based metric"^^ . _:genid5845 . _:genid5845 . _:genid5845 . _:genid5845 "QC metric calculated from multiple runs (e.g. multiple .raw files)."^^ . _:genid5845 "PSI:MS"^^ . . . "QC metric calculated from a single spectrum."^^ . "MS"^^ . "MS:4000014"^^ . "single spectrum based metric"^^ . _:genid5846 . _:genid5846 . _:genid5846 . _:genid5846 "QC metric calculated from a single spectrum."^^ . _:genid5846 "PSI:MS"^^ . . . "QC metric calculated from multiple spectra."^^ . "MS"^^ . "MS:4000015"^^ . "multiple spectra based metric"^^ . _:genid5847 . _:genid5847 . _:genid5847 . _:genid5847 "QC metric calculated from multiple spectra."^^ . _:genid5847 "PSI:MS"^^ . . . "QC metric related to retention time."^^ . "MS"^^ . "MS:4000016"^^ . "retention time metric"^^ . _:genid5848 . _:genid5848 . _:genid5848 . _:genid5848 "QC metric related to retention time."^^ . _:genid5848 "PSI:MS"^^ . . . "QC metric related to a chromatogram."^^ . "MS"^^ . "MS:4000017"^^ . "chromatogram metric"^^ . _:genid5849 . _:genid5849 . _:genid5849 . _:genid5849 "QC metric related to a chromatogram."^^ . _:genid5849 "PSI:MS"^^ . . . "QC metric related to an extracted ion chromatogram."^^ . "MS"^^ . "MS:4000018"^^ . "XIC metric"^^ . _:genid5850 . _:genid5850 . _:genid5850 . _:genid5850 "QC metric related to an extracted ion chromatogram."^^ . _:genid5850 "PSI:MS"^^ . . . "QC metric related to the mass spectrometry acquisition."^^ . "MS"^^ . "MS:4000019"^^ . "MS metric"^^ . _:genid5851 . _:genid5851 . _:genid5851 . _:genid5851 "QC metric related to the mass spectrometry acquisition."^^ . _:genid5851 "PSI:MS"^^ . . . "QC metric related to events in the ion source."^^ . "MS"^^ . "MS:4000020"^^ . "ion source metric"^^ . _:genid5852 . _:genid5852 . _:genid5852 . _:genid5852 "QC metric related to events in the ion source."^^ . _:genid5852 "PSI:MS"^^ . . . "QC metric based on MS1 events."^^ . "MS"^^ . "MS:4000021"^^ . "MS1 metric"^^ . _:genid5853 . _:genid5853 . _:genid5853 . _:genid5853 "QC metric based on MS1 events."^^ . _:genid5853 "PSI:MS"^^ . . . "QC metric based on MS2 events."^^ . "MS"^^ . "MS:4000022"^^ . "MS2 metric"^^ . _:genid5854 . _:genid5854 . _:genid5854 . _:genid5854 "QC metric based on MS2 events."^^ . _:genid5854 "PSI:MS"^^ . . . "QC metric related to the sample preparation."^^ . "MS"^^ . "MS:4000023"^^ . "sample preparation metric"^^ . _:genid5855 . _:genid5855 . _:genid5855 . _:genid5855 "QC metric related to the sample preparation."^^ . _:genid5855 "PSI:MS"^^ . . . "QC metric related to measurements of the ambient environment, such as the laboratory."^^ . "MS"^^ . "MS:4000024"^^ . "environment metric"^^ . _:genid5856 . _:genid5856 . _:genid5856 . _:genid5856 "QC metric related to measurements of the ambient environment, such as the laboratory."^^ . _:genid5856 "PSI:MS"^^ . . . _:genid5857 . _:genid5857 . _:genid5857 . _:genid5857 . _:genid5858 . _:genid5858 . _:genid5858 . _:genid5858 . _:genid5859 . _:genid5859 . _:genid5859 . _:genid5859 . _:genid5860 . _:genid5860 . _:genid5860 . _:genid5860 . "The number of XIC that account for the top half of all XIC-FWHM divided by the number of all XIC."^^ . "XIC-WideFrac"^^ . "MS"^^ . "MS:4000050"^^ . "This metric characterises the distribution of precursor peak widths, much as the N50 characterises contig sizes in genome assembly."^^ . "XIC50 fraction"^^ . _:genid5861 . _:genid5861 . _:genid5861 . _:genid5861 "The number of XIC that account for the top half of all XIC-FWHM divided by the number of all XIC."^^ . _:genid5861 "PSI:MS"^^ . _:genid5862 . _:genid5862 . _:genid5862 . _:genid5862 "XIC-WideFrac"^^ . _:genid5862 "PMID:24494671"^^ . . . _:genid5863 . _:genid5863 . _:genid5863 . _:genid5863 . _:genid5864 . _:genid5864 . _:genid5864 . _:genid5864 . _:genid5865 . _:genid5865 . _:genid5865 . _:genid5865 . _:genid5866 . _:genid5866 . _:genid5866 . _:genid5866 . _:genid5867 . _:genid5867 . _:genid5867 . _:genid5867 . _:genid5868 . _:genid5868 . _:genid5868 . _:genid5868 . _:genid5869 . _:genid5869 . _:genid5869 . _:genid5869 . "The first to n-th quantile of peak widths for XICs. A metric's value triplet represents the related QuaMeter metrics of of XIC-FWHM-Q1,Q2,Q3."^^ . "MS"^^ . "XIC-FWHM-Q1"^^ . "XIC-FWHM-Q2"^^ . "XIC-FWHM-Q3"^^ . "MS:4000051"^^ . "XIC-FWHM quantiles"^^ . _:genid5870 . _:genid5870 . _:genid5870 . _:genid5870 "The first to n-th quantile of peak widths for XICs. A metric's value triplet represents the related QuaMeter metrics of of XIC-FWHM-Q1,Q2,Q3."^^ . _:genid5870 "PSI:MS"^^ . _:genid5871 . _:genid5871 . _:genid5871 . _:genid5871 "XIC-FWHM-Q1"^^ . _:genid5871 "PMID:24494671"^^ . _:genid5872 . _:genid5872 . _:genid5872 . _:genid5872 "XIC-FWHM-Q2"^^ . _:genid5872 "PMID:24494671"^^ . _:genid5873 . _:genid5873 . _:genid5873 . _:genid5873 "XIC-FWHM-Q3"^^ . _:genid5873 "PMID:24494671"^^ . . . _:genid5874 . _:genid5874 . _:genid5874 . _:genid5874 . _:genid5875 . _:genid5875 . _:genid5875 . _:genid5875 . _:genid5876 . _:genid5876 . _:genid5876 . _:genid5876 . _:genid5877 . _:genid5877 . _:genid5877 . _:genid5877 . _:genid5878 . _:genid5878 . _:genid5878 . _:genid5878 . _:genid5879 . _:genid5879 . _:genid5879 . _:genid5879 . "The log ratio of successive XIC height quartiles. The metric's value triplet represents the log ratios of XIC-height-Q2 to XIC-height-Q1, XIC-height-Q3 to XIC-height-Q2, XIC-height max to XIC-height-Q3."^^ . "MS"^^ . "XIC-Height-Q2"^^ . "XIC-Height-Q3"^^ . "XIC-Height-Q4"^^ . "MS:4000052"^^ . "XIC-Height quartile ratios"^^ . _:genid5880 . _:genid5880 . _:genid5880 . _:genid5880 "The log ratio of successive XIC height quartiles. The metric's value triplet represents the log ratios of XIC-height-Q2 to XIC-height-Q1, XIC-height-Q3 to XIC-height-Q2, XIC-height max to XIC-height-Q3."^^ . _:genid5880 "PSI:MS"^^ . _:genid5881 . _:genid5881 . _:genid5881 . _:genid5881 "XIC-Height-Q2"^^ . _:genid5881 "PMID:24494671"^^ . _:genid5882 . _:genid5882 . _:genid5882 . _:genid5882 "XIC-Height-Q3"^^ . _:genid5882 "PMID:24494671"^^ . _:genid5883 . _:genid5883 . _:genid5883 . _:genid5883 "XIC-Height-Q4"^^ . _:genid5883 "PMID:24494671"^^ . . . _:genid5884 . _:genid5884 . _:genid5884 . _:genid5884 . _:genid5885 . _:genid5885 . _:genid5885 . _:genid5885 . _:genid5886 . _:genid5886 . _:genid5886 . _:genid5886 . _:genid5887 . _:genid5887 . _:genid5887 . _:genid5887 . _:genid5888 . _:genid5888 . _:genid5888 . _:genid5888 . _:genid5889 . _:genid5889 . _:genid5889 . _:genid5889 . "The retention time duration of the chromatography in seconds."^^ . "MS"^^ . "MS:4000053"^^ . "chromatography duration"^^ . _:genid5890 . _:genid5890 . _:genid5890 . _:genid5890 "The retention time duration of the chromatography in seconds."^^ . _:genid5890 "PSI:MS"^^ . . . _:genid5891 . _:genid5891 . _:genid5891 . _:genid5891 . _:genid5892 . _:genid5892 . _:genid5892 . _:genid5892 . _:genid5893 . _:genid5893 . _:genid5893 . _:genid5893 . _:genid5894 . _:genid5894 . _:genid5894 . _:genid5894 . _:genid5895 . _:genid5895 . _:genid5895 . _:genid5895 . _:genid5896 . _:genid5896 . _:genid5896 . _:genid5896 . "The interval when the respective quarter of the TIC accumulates divided by retention time duration."^^ . "MS"^^ . "RT-TIC-Q1"^^ . "RT-TIC-Q2"^^ . "RT-TIC-Q3"^^ . "RT-TIC-Q4"^^ . "MS:4000054"^^ . "TIC quarters RT fraction"^^ . _:genid5897 . _:genid5897 . _:genid5897 . _:genid5897 "The interval when the respective quarter of the TIC accumulates divided by retention time duration."^^ . _:genid5897 "PSI:QC"^^ . _:genid5898 . _:genid5898 . _:genid5898 . _:genid5898 "RT-TIC-Q1"^^ . _:genid5898 "PMID:24494671"^^ . _:genid5899 . _:genid5899 . _:genid5899 . _:genid5899 "RT-TIC-Q2"^^ . _:genid5899 "PMID:24494671"^^ . _:genid5900 . _:genid5900 . _:genid5900 . _:genid5900 "RT-TIC-Q3"^^ . _:genid5900 "PMID:24494671"^^ . _:genid5901 . _:genid5901 . _:genid5901 . _:genid5901 "RT-TIC-Q4"^^ . _:genid5901 "PMID:24494671"^^ . . . _:genid5902 . _:genid5902 . _:genid5902 . _:genid5902 . _:genid5903 . _:genid5903 . _:genid5903 . _:genid5903 . _:genid5904 . _:genid5904 . _:genid5904 . _:genid5904 . _:genid5905 . _:genid5905 . _:genid5905 . _:genid5905 . _:genid5906 . _:genid5906 . _:genid5906 . _:genid5906 . _:genid5907 . _:genid5907 . _:genid5907 . _:genid5907 . "The interval used for acquisition of the first, second, third, and fourth quarter of all MS1 events divided by retention time duration."^^ . "MS"^^ . "RT-MS-Q1"^^ . "RT-MS-Q2"^^ . "RT-MS-Q3"^^ . "RT-MS-Q4"^^ . "MS:4000055"^^ . "MS1 quarter RT fraction"^^ . _:genid5908 . _:genid5908 . _:genid5908 . _:genid5908 "The interval used for acquisition of the first, second, third, and fourth quarter of all MS1 events divided by retention time duration."^^ . _:genid5908 "PSI:QC"^^ . _:genid5909 . _:genid5909 . _:genid5909 . _:genid5909 "RT-MS-Q1"^^ . _:genid5909 "PMID:24494671"^^ . _:genid5910 . _:genid5910 . _:genid5910 . _:genid5910 "RT-MS-Q2"^^ . _:genid5910 "PMID:24494671"^^ . _:genid5911 . _:genid5911 . _:genid5911 . _:genid5911 "RT-MS-Q3"^^ . _:genid5911 "PMID:24494671"^^ . _:genid5912 . _:genid5912 . _:genid5912 . _:genid5912 "RT-MS-Q4"^^ . _:genid5912 "PMID:24494671"^^ . . . _:genid5913 . _:genid5913 . _:genid5913 . _:genid5913 . _:genid5914 . _:genid5914 . _:genid5914 . _:genid5914 . _:genid5915 . _:genid5915 . _:genid5915 . _:genid5915 . _:genid5916 . _:genid5916 . _:genid5916 . _:genid5916 . _:genid5917 . _:genid5917 . _:genid5917 . _:genid5917 . _:genid5918 . _:genid5918 . _:genid5918 . _:genid5918 . "The interval used for acquisition of the first, second, third, and fourth quarter of all MS2 events divided by retention time duration."^^ . "MS"^^ . "RT-MSMS-Q1"^^ . "RT-MSMS-Q2"^^ . "RT-MSMS-Q3"^^ . "RT-MSMS-Q4"^^ . "MS:4000056"^^ . "MS2 quarter RT fraction"^^ . _:genid5919 . _:genid5919 . _:genid5919 . _:genid5919 "The interval used for acquisition of the first, second, third, and fourth quarter of all MS2 events divided by retention time duration."^^ . _:genid5919 "PSI:QC"^^ . _:genid5920 . _:genid5920 . _:genid5920 . _:genid5920 "RT-MSMS-Q1"^^ . _:genid5920 "PMID:24494671"^^ . _:genid5921 . _:genid5921 . _:genid5921 . _:genid5921 "RT-MSMS-Q2"^^ . _:genid5921 "PMID:24494671"^^ . _:genid5922 . _:genid5922 . _:genid5922 . _:genid5922 "RT-MSMS-Q3"^^ . _:genid5922 "PMID:24494671"^^ . _:genid5923 . _:genid5923 . _:genid5923 . _:genid5923 "RT-MSMS-Q4"^^ . _:genid5923 "PMID:24494671"^^ . . . _:genid5924 . _:genid5924 . _:genid5924 . _:genid5924 . _:genid5925 . _:genid5925 . _:genid5925 . _:genid5925 . _:genid5926 . _:genid5926 . _:genid5926 . _:genid5926 . _:genid5927 . _:genid5927 . _:genid5927 . _:genid5927 . _:genid5928 . _:genid5928 . _:genid5928 . _:genid5928 . _:genid5929 . _:genid5929 . _:genid5929 . _:genid5929 . "The log ratios of successive TIC-change quartiles. The TIC changes are the list of MS1 total ion current (TIC) value changes from one to the next scan, produced when each MS1 TIC is subtracted from the preceding MS1 TIC. The metric's value triplet represents the log ratio of the TIC-change Q2 to Q1, Q3 to Q2, TIC-change-max to Q3"^^ . "MS"^^ . "MS1-TIC-Change-Q2"^^ . "MS1-TIC-Change-Q3"^^ . "MS1-TIC-Change-Q4"^^ . "MS:4000057"^^ . "MS1 TIC-change quartile ratios"^^ . _:genid5930 . _:genid5930 . _:genid5930 . _:genid5930 "The log ratios of successive TIC-change quartiles. The TIC changes are the list of MS1 total ion current (TIC) value changes from one to the next scan, produced when each MS1 TIC is subtracted from the preceding MS1 TIC. The metric's value triplet represents the log ratio of the TIC-change Q2 to Q1, Q3 to Q2, TIC-change-max to Q3"^^ . _:genid5930 "PSI:MS"^^ . _:genid5931 . _:genid5931 . _:genid5931 . _:genid5931 "MS1-TIC-Change-Q2"^^ . _:genid5931 "PMID:24494671"^^ . _:genid5932 . _:genid5932 . _:genid5932 . _:genid5932 "MS1-TIC-Change-Q3"^^ . _:genid5932 "PMID:24494671"^^ . _:genid5933 . _:genid5933 . _:genid5933 . _:genid5933 "MS1-TIC-Change-Q4"^^ . _:genid5933 "PMID:24494671"^^ . . . _:genid5934 . _:genid5934 . _:genid5934 . _:genid5934 . _:genid5935 . _:genid5935 . _:genid5935 . _:genid5935 . _:genid5936 . _:genid5936 . _:genid5936 . _:genid5936 . _:genid5937 . _:genid5937 . _:genid5937 . _:genid5937 . _:genid5938 . _:genid5938 . _:genid5938 . _:genid5938 . _:genid5939 . _:genid5939 . _:genid5939 . _:genid5939 . "The log ratios of successive TIC quartiles. The metric's value triplet represents the log ratios of TIC-Q2 to TIC-Q1, TIC-Q3 to TIC-Q2, TIC-max to TIC-Q3."^^ . "MS"^^ . "MS1-TIC-Q2"^^ . "MS1-TIC-Q3"^^ . "MS1-TIC-Q4"^^ . "MS:4000058"^^ . "MS1 TIC quartile ratios"^^ . _:genid5940 . _:genid5940 . _:genid5940 . _:genid5940 "The log ratios of successive TIC quartiles. The metric's value triplet represents the log ratios of TIC-Q2 to TIC-Q1, TIC-Q3 to TIC-Q2, TIC-max to TIC-Q3."^^ . _:genid5940 "PSI:MS"^^ . _:genid5941 . _:genid5941 . _:genid5941 . _:genid5941 "MS1-TIC-Q2"^^ . _:genid5941 "PMID:24494671"^^ . _:genid5942 . _:genid5942 . _:genid5942 . _:genid5942 "MS1-TIC-Q3"^^ . _:genid5942 "PMID:24494671"^^ . _:genid5943 . _:genid5943 . _:genid5943 . _:genid5943 "MS1-TIC-Q4"^^ . _:genid5943 "PMID:24494671"^^ . . . _:genid5944 . _:genid5944 . _:genid5944 . _:genid5944 . _:genid5945 . _:genid5945 . _:genid5945 . _:genid5945 . _:genid5946 . _:genid5946 . _:genid5946 . _:genid5946 . _:genid5947 . _:genid5947 . _:genid5947 . _:genid5947 . _:genid5948 . _:genid5948 . _:genid5948 . _:genid5948 . "The number of MS1 events in the run."^^ . "MS1-Count"^^ . "MS"^^ . "MS:4000059"^^ . "number of MS1 spectra"^^ . _:genid5949 . _:genid5949 . _:genid5949 . _:genid5949 "The number of MS1 events in the run."^^ . _:genid5949 "PSI:MS"^^ . _:genid5950 . _:genid5950 . _:genid5950 . _:genid5950 "MS1-Count"^^ . _:genid5950 "PMID:24494671"^^ . . . _:genid5951 . _:genid5951 . _:genid5951 . _:genid5951 . _:genid5952 . _:genid5952 . _:genid5952 . _:genid5952 . _:genid5953 . _:genid5953 . _:genid5953 . _:genid5953 . _:genid5954 . _:genid5954 . _:genid5954 . _:genid5954 . _:genid5955 . _:genid5955 . _:genid5955 . _:genid5955 . "The number of MS2 events in the run."^^ . "MS2-Count"^^ . "MS"^^ . "MS:4000060"^^ . "number of MS2 spectra"^^ . _:genid5956 . _:genid5956 . _:genid5956 . _:genid5956 "The number of MS2 events in the run."^^ . _:genid5956 "PSI:MS"^^ . _:genid5957 . _:genid5957 . _:genid5957 . _:genid5957 "MS2-Count"^^ . _:genid5957 "PMID:24494671"^^ . . . _:genid5958 . _:genid5958 . _:genid5958 . _:genid5958 . _:genid5959 . _:genid5959 . _:genid5959 . _:genid5959 . _:genid5960 . _:genid5960 . _:genid5960 . _:genid5960 . _:genid5961 . _:genid5961 . _:genid5961 . _:genid5961 . _:genid5962 . _:genid5962 . _:genid5962 . _:genid5962 . _:genid5963 . _:genid5963 . _:genid5963 . _:genid5963 . "The first to n-th quantile of MS1 peak density (scan peak counts). A value triplet represents the original QuaMeter metrics, the quartiles of MS1 density. The number of values in the tuple implies the quantile mode."^^ . "MS"^^ . "MS1-Density-Q1"^^ . "MS1-Density-Q2"^^ . "MS1-Density-Q3"^^ . "MS:4000061"^^ . "MS1 density quantiles"^^ . _:genid5964 . _:genid5964 . _:genid5964 . _:genid5964 "The first to n-th quantile of MS1 peak density (scan peak counts). A value triplet represents the original QuaMeter metrics, the quartiles of MS1 density. The number of values in the tuple implies the quantile mode."^^ . _:genid5964 "PSI:MS"^^ . _:genid5965 . _:genid5965 . _:genid5965 . _:genid5965 "MS1-Density-Q1"^^ . _:genid5965 "PMID:24494671"^^ . _:genid5966 . _:genid5966 . _:genid5966 . _:genid5966 "MS1-Density-Q2"^^ . _:genid5966 "PMID:24494671"^^ . _:genid5967 . _:genid5967 . _:genid5967 . _:genid5967 "MS1-Density-Q3"^^ . _:genid5967 "PMID:24494671"^^ . . . _:genid5968 . _:genid5968 . _:genid5968 . _:genid5968 . _:genid5969 . _:genid5969 . _:genid5969 . _:genid5969 . _:genid5970 . _:genid5970 . _:genid5970 . _:genid5970 . _:genid5971 . _:genid5971 . _:genid5971 . _:genid5971 . _:genid5972 . _:genid5972 . _:genid5972 . _:genid5972 . _:genid5973 . _:genid5973 . _:genid5973 . _:genid5973 . "The first to n-th quantile of MS2 peak density (scan peak counts). A value triplet represents the original QuaMeter metrics, the quartiles of MS2 density. The number of values in the tuple implies the quantile mode."^^ . "MS"^^ . "MS2-Density-Q1"^^ . "MS2-Density-Q2"^^ . "MS2-Density-Q3"^^ . "MS:4000062"^^ . "MS2 density quantiles"^^ . _:genid5974 . _:genid5974 . _:genid5974 . _:genid5974 "The first to n-th quantile of MS2 peak density (scan peak counts). A value triplet represents the original QuaMeter metrics, the quartiles of MS2 density. The number of values in the tuple implies the quantile mode."^^ . _:genid5974 "PSI:MS"^^ . _:genid5975 . _:genid5975 . _:genid5975 . _:genid5975 "MS2-Density-Q1"^^ . _:genid5975 "PMID:24494671"^^ . _:genid5976 . _:genid5976 . _:genid5976 . _:genid5976 "MS2-Density-Q2"^^ . _:genid5976 "PMID:24494671"^^ . _:genid5977 . _:genid5977 . _:genid5977 . _:genid5977 "MS2-Density-Q3"^^ . _:genid5977 "PMID:24494671"^^ . . . _:genid5978 . _:genid5978 . _:genid5978 . _:genid5978 . _:genid5979 . _:genid5979 . _:genid5979 . _:genid5979 . _:genid5980 . _:genid5980 . _:genid5980 . _:genid5980 . _:genid5981 . _:genid5981 . _:genid5981 . _:genid5981 . _:genid5982 . _:genid5982 . _:genid5982 . _:genid5982 . _:genid5983 . _:genid5983 . _:genid5983 . _:genid5983 . "The fraction of MS/MS precursors of the corresponding charge. The fractions [0,1] are given in the 'Fraction' column, corresponding charges in the 'Charge state' column. The highest charge state is to be interpreted as that charge state or higher."^^ . "MS2-PrecZ-1"^^ . "MS2-PrecZ-2"^^ . "MS2-PrecZ-3"^^ . "MS2-PrecZ-4"^^ . "MS2-PrecZ-5"^^ . "MS2-PrecZ-more"^^ . "MS"^^ . "IS-3A"^^ . "IS-3B"^^ . "IS-3C"^^ . "MS:4000063"^^ . "the MS2-PrecZ metrics can be directly read from the table respective table rows, the ratios of IS-3 metrics must be derived from the respective table rows, IS-3A as ratio of +1 over +2, IS-3B as ratio of +3 over +2, IS-3C as +4 over +2."^^ . "MS2 known precursor charges fractions"^^ . _:genid5984 . _:genid5984 . _:genid5984 . _:genid5984 "The fraction of MS/MS precursors of the corresponding charge. The fractions [0,1] are given in the 'Fraction' column, corresponding charges in the 'Charge state' column. The highest charge state is to be interpreted as that charge state or higher."^^ . _:genid5984 "PSI:MS"^^ . _:genid5985 . _:genid5985 . _:genid5985 . _:genid5985 "MS2-PrecZ-1"^^ . _:genid5985 "PMID:24494671"^^ . _:genid5986 . _:genid5986 . _:genid5986 . _:genid5986 "MS2-PrecZ-2"^^ . _:genid5986 "PMID:24494671"^^ . _:genid5987 . _:genid5987 . _:genid5987 . _:genid5987 "MS2-PrecZ-3"^^ . _:genid5987 "PMID:24494671"^^ . _:genid5988 . _:genid5988 . _:genid5988 . _:genid5988 "MS2-PrecZ-4"^^ . _:genid5988 "PMID:24494671"^^ . _:genid5989 . _:genid5989 . _:genid5989 . _:genid5989 "MS2-PrecZ-5"^^ . _:genid5989 "PMID:24494671"^^ . _:genid5990 . _:genid5990 . _:genid5990 . _:genid5990 "MS2-PrecZ-more"^^ . _:genid5990 "PMID:24494671"^^ . _:genid5991 . _:genid5991 . _:genid5991 . _:genid5991 "IS-3A"^^ . _:genid5991 "PMID:19837981"^^ . _:genid5992 . _:genid5992 . _:genid5992 . _:genid5992 "IS-3B"^^ . _:genid5992 "PMID:19837981"^^ . _:genid5993 . _:genid5993 . _:genid5993 . _:genid5993 "IS-3C"^^ . _:genid5993 "PMID:19837981"^^ . . . _:genid5994 . _:genid5994 . _:genid5994 . _:genid5994 . _:genid5995 . _:genid5995 . _:genid5995 . _:genid5995 . _:genid5996 . _:genid5996 . _:genid5996 . _:genid5996 . _:genid5997 . _:genid5997 . _:genid5997 . _:genid5997 . _:genid5998 . _:genid5998 . _:genid5998 . _:genid5998 . _:genid5999 . _:genid5999 . _:genid5999 . _:genid5999 . "The fractions of inferred charge state of MS/MS precursors. The fractions [0,1] are given in the 'Fraction' column, corresponding charges in the 'Charge state' column. Charge 0 represents unknown charge states."^^ . "MS"^^ . "MS2-PrecZ-likely-1"^^ . "MS2-PrecZ-likely-multi"^^ . "MS:4000064"^^ . "MS2 unknown and likely precursor charges fractions"^^ . _:genid6000 . _:genid6000 . _:genid6000 . _:genid6000 "The fractions of inferred charge state of MS/MS precursors. The fractions [0,1] are given in the 'Fraction' column, corresponding charges in the 'Charge state' column. Charge 0 represents unknown charge states."^^ . _:genid6000 "PSI:MS"^^ . _:genid6001 . _:genid6001 . _:genid6001 . _:genid6001 "MS2-PrecZ-likely-1"^^ . _:genid6001 "PMID:24494671"^^ . _:genid6002 . _:genid6002 . _:genid6002 . _:genid6002 "MS2-PrecZ-likely-multi"^^ . _:genid6002 "PMID:24494671"^^ . . . _:genid6003 . _:genid6003 . _:genid6003 . _:genid6003 . _:genid6004 . _:genid6004 . _:genid6004 . _:genid6004 . _:genid6005 . _:genid6005 . _:genid6005 . _:genid6005 . _:genid6006 . _:genid6006 . _:genid6006 . _:genid6006 . _:genid6007 . _:genid6007 . _:genid6007 . _:genid6007 . "Fastest frequency for MS level 1 collection"^^ . "MS1-Freq-Max"^^ . "MS"^^ . "MS:4000065"^^ . "Spectrum acquisition frequency can be used to gauge the suitability of used instrument settings for the sample content used."^^ . "fastest frequency for MS level 1 collection"^^ . _:genid6008 . _:genid6008 . _:genid6008 . _:genid6008 "Fastest frequency for MS level 1 collection"^^ . _:genid6008 "PSI:MS"^^ . _:genid6009 . _:genid6009 . _:genid6009 . _:genid6009 "MS1-Freq-Max"^^ . _:genid6009 "PMID:24494671"^^ . . . _:genid6010 . _:genid6010 . _:genid6010 . _:genid6010 . _:genid6011 . _:genid6011 . _:genid6011 . _:genid6011 . _:genid6012 . _:genid6012 . _:genid6012 . _:genid6012 . _:genid6013 . _:genid6013 . _:genid6013 . _:genid6013 . _:genid6014 . _:genid6014 . _:genid6014 . _:genid6014 . "Fastest frequency for MS level 2 collection"^^ . "MS2-Freq-Max"^^ . "MS"^^ . "MS:4000066"^^ . "Spectrum acquisition frequency can be used to gauge the suitability of used instrument settings for the sample content used."^^ . "fastest frequency for MS level 2 collection"^^ . _:genid6015 . _:genid6015 . _:genid6015 . _:genid6015 "Fastest frequency for MS level 2 collection"^^ . _:genid6015 "PSI:MS"^^ . _:genid6016 . _:genid6016 . _:genid6016 . _:genid6016 "MS2-Freq-Max"^^ . _:genid6016 "PMID:24494671"^^ . . . _:genid6017 . _:genid6017 . _:genid6017 . _:genid6017 . _:genid6018 . _:genid6018 . _:genid6018 . _:genid6018 . _:genid6019 . _:genid6019 . _:genid6019 . _:genid6019 . _:genid6020 . _:genid6020 . _:genid6020 . _:genid6020 . _:genid6021 . _:genid6021 . _:genid6021 . _:genid6021 . _:genid6022 . _:genid6022 . _:genid6022 . _:genid6022 . "The duration of the mass spectrometry acquisition (as measured by the time between the last scan and first scan) in seconds."^^ . "MS"^^ . "MS:4000067"^^ . "MS run duration"^^ . _:genid6023 . _:genid6023 . _:genid6023 . _:genid6023 "The duration of the mass spectrometry acquisition (as measured by the time between the last scan and first scan) in seconds."^^ . _:genid6023 "PSI:MS"^^ . . . _:genid6024 . _:genid6024 . _:genid6024 . _:genid6024 . _:genid6025 . _:genid6025 . _:genid6025 . _:genid6025 . _:genid6026 . _:genid6026 . _:genid6026 . _:genid6026 . _:genid6027 . _:genid6027 . _:genid6027 . _:genid6027 . _:genid6028 . _:genid6028 . _:genid6028 . _:genid6028 . _:genid6029 . _:genid6029 . _:genid6029 . _:genid6029 . _:genid6030 . _:genid6030 . _:genid6030 . _:genid6030 . "The minimal proportion of peaks needed to account for at least 50% of the total ion current in each individual spectrum considered, recorded in a mandatory fraction column. Either USI or native spectrum identifier columns must be present as well."^^ . "MS"^^ . "MS:4000068"^^ . "spectra half-TIC"^^ . _:genid6031 . _:genid6031 . _:genid6031 . _:genid6031 "The minimal proportion of peaks needed to account for at least 50% of the total ion current in each individual spectrum considered, recorded in a mandatory fraction column. Either USI or native spectrum identifier columns must be present as well."^^ . _:genid6031 "PSI:MS"^^ . . . _:genid6032 . _:genid6032 . _:genid6032 . _:genid6032 . _:genid6033 . _:genid6033 . _:genid6033 . _:genid6033 . _:genid6034 . _:genid6034 . _:genid6034 . _:genid6034 . _:genid6035 . _:genid6035 . _:genid6035 . _:genid6035 . _:genid6036 . _:genid6036 . _:genid6036 . _:genid6036 . "Upper and lower limit of m/z precursor values at which MSn spectra are recorded."^^ . "MS"^^ . "MS:4000069"^^ . "m/z acquisition range"^^ . _:genid6037 . _:genid6037 . _:genid6037 . _:genid6037 "Upper and lower limit of m/z precursor values at which MSn spectra are recorded."^^ . _:genid6037 "PSI:MS"^^ . . . _:genid6038 . _:genid6038 . _:genid6038 . _:genid6038 . _:genid6039 . _:genid6039 . _:genid6039 . _:genid6039 . _:genid6040 . _:genid6040 . _:genid6040 . _:genid6040 . _:genid6041 . _:genid6041 . _:genid6041 . _:genid6041 . _:genid6042 . _:genid6042 . _:genid6042 . _:genid6042 . "Upper and lower limit of retention time at which spectra are recorded."^^ . "MS"^^ . "MS:4000070"^^ . "retention time acquisition range"^^ . _:genid6043 . _:genid6043 . _:genid6043 . _:genid6043 "Upper and lower limit of retention time at which spectra are recorded."^^ . _:genid6043 "PSI:MS"^^ . . . _:genid6044 . _:genid6044 . _:genid6044 . _:genid6044 . _:genid6045 . _:genid6045 . _:genid6045 . _:genid6045 . _:genid6046 . _:genid6046 . _:genid6046 . _:genid6046 . _:genid6047 . _:genid6047 . _:genid6047 . _:genid6047 . _:genid6048 . _:genid6048 . _:genid6048 . _:genid6048 . "The number of chromatograms recorded for the run."^^ . "MS"^^ . "MS:4000071"^^ . "number of chromatograms"^^ . _:genid6049 . _:genid6049 . _:genid6049 . _:genid6049 "The number of chromatograms recorded for the run."^^ . _:genid6049 "PSI:MS"^^ . . _:genid6050 . _:genid6050 . _:genid6050 . _:genid6050 . _:genid6051 . _:genid6051 . _:genid6051 . _:genid6051 . _:genid6052 . _:genid6052 . _:genid6052 . _:genid6052 . _:genid6053 . _:genid6053 . _:genid6053 . _:genid6053 . _:genid6054 . _:genid6054 . _:genid6054 . _:genid6054 . "Observed mass accuracy in ppm, calculated by 1E6 x (observed m/z - theoretical m/z)/theoretical m/z of a selected and identified ion in a mass spectrum."^^ . "MS"^^ . "MS:4000072"^^ . "observed mass accuracy"^^ . _:genid6055 . _:genid6055 . _:genid6055 . _:genid6055 "Observed mass accuracy in ppm, calculated by 1E6 x (observed m/z - theoretical m/z)/theoretical m/z of a selected and identified ion in a mass spectrum."^^ . _:genid6055 "PSI:MS"^^ . . . "A QC metric based on a QC sample of known content."^^ . "MS"^^ . "MS:4000073"^^ . "QC sample metric"^^ . _:genid6056 . _:genid6056 . _:genid6056 . _:genid6056 "A QC metric based on a QC sample of known content."^^ . _:genid6056 "PSI:MS"^^ . . . "A QC metric based on a QC sample of known and high complexity content."^^ . "MS"^^ . "MS:4000074"^^ . "high complexity QC sample metric"^^ . _:genid6057 . _:genid6057 . _:genid6057 . _:genid6057 "A QC metric based on a QC sample of known and high complexity content."^^ . _:genid6057 "PSI:MS"^^ . . . "A QC metric based on a QC sample of known and low complexity content."^^ . "MS"^^ . "MS:4000075"^^ . "low complexity QC sample metric"^^ . _:genid6058 . _:genid6058 . _:genid6058 . _:genid6058 "A QC metric based on a QC sample of known and low complexity content."^^ . _:genid6058 "PSI:MS"^^ . . . "A QC metric based on the results of a QC2 sample measurement. A QC2 sample is made from Pierce HeLa protein digest standard, see Pichler et al. Chiva et al. for details on QC sample design."^^ . "MS"^^ . "MS:4000076"^^ . "Expected peptides from QC2 sample measurement are: 'YAEAVTR','STLTDSLVC(Carbamidomethyl)K','SLADELALVDVLEDK','NPDDITNEEYGEFYK','LAVDEEENADNNTK','FEELNMDLFR','EAALSTALSEK','DDVAQTDLLQIDPNFGSK','RFPGYDSESK','EATTEFSVDAR','EQFLDGDGWTSR','TPAQFDADELR','LGDLYEEEMR','EVSTYIK','FAFQAEVNR'"^^ . "QC2 sample metric"^^ . _:genid6059 . _:genid6059 . _:genid6059 . _:genid6059 "A QC metric based on the results of a QC2 sample measurement. A QC2 sample is made from Pierce HeLa protein digest standard, see Pichler et al. Chiva et al. for details on QC sample design."^^ . _:genid6059 "PMID:23088386"^^ . _:genid6059 "PMID:29324744"^^ . _:genid6059 "PSI:MS"^^ . . . "A QC metric based on the results of a QC1 sample measurement. A QC1 sample is made from trypsin-digested BSA MS Standard (CAM modified), see Pichler et al. Chiva et al. for details on QC sample design)."^^ . "MS"^^ . "MS:4000077"^^ . "Expected peptides from QC1 sample measurement are: 'LVNELTEFAK','HLVDEPQNLIK','VPQVSTPTLVEVSR','EAC(Carbamidomethyl)FAVEGPK','EYEATLEEC(Carbamidomethyl)C(Carbamidomethyl)AK','EC(Carbamidomethyl)C(Carbamidomethyl)HGDLLEC(Carbamidomethyl)ADDR','SLHTLFGDELC(Carbamidomethyl)K','TC(Carbamidomethyl)VADESHAGC(Carbamidomethyl)EK','YIC(Carbamidomethyl)DNQDTISSK','NEC(Carbamidomethyl)FLSHK'"^^ . "QC1 sample metric"^^ . _:genid6060 . _:genid6060 . _:genid6060 . _:genid6060 "A QC metric based on the results of a QC1 sample measurement. A QC1 sample is made from trypsin-digested BSA MS Standard (CAM modified), see Pichler et al. Chiva et al. for details on QC sample design)."^^ . _:genid6060 "PMID:23088386"^^ . _:genid6060 "PMID:29324744"^^ . _:genid6060 "PSI:MS"^^ . . . _:genid6061 . _:genid6061 . _:genid6061 . _:genid6061 . _:genid6062 . _:genid6062 . _:genid6062 . _:genid6062 . _:genid6063 . _:genid6063 . _:genid6063 . _:genid6063 . _:genid6064 . _:genid6064 . _:genid6064 . _:genid6064 . "Observed mass accuracy for the peptides of a QC2 sample measurement. The table should contain the peptides as described in the QC2 sample metric term, missing are interpreted as not detected."^^ . "MS"^^ . "MS:4000078"^^ . "QC2 sample mass accuracies"^^ . _:genid6065 . _:genid6065 . _:genid6065 . _:genid6065 "Observed mass accuracy for the peptides of a QC2 sample measurement. The table should contain the peptides as described in the QC2 sample metric term, missing are interpreted as not detected."^^ . _:genid6065 "PSI:MS"^^ . . . _:genid6066 . _:genid6066 . _:genid6066 . _:genid6066 . _:genid6067 . _:genid6067 . _:genid6067 . _:genid6067 . _:genid6068 . _:genid6068 . _:genid6068 . _:genid6068 . _:genid6069 . _:genid6069 . _:genid6069 . _:genid6069 . _:genid6070 . _:genid6070 . _:genid6070 . _:genid6070 . _:genid6071 . _:genid6071 . _:genid6071 . _:genid6071 . _:genid6072 . _:genid6072 . _:genid6072 . _:genid6072 . _:genid6073 . _:genid6073 . _:genid6073 . _:genid6073 . "Observed intensities for the peptides of a QC2 sample measurement within 5 ppm and +/- 240 s RT tolerance. Different metrics of observed intensities are possible, at least one must be present. The table should contain the peptides as defined in the parent QC2 sample metric term, missing are interpreted as not detected."^^ . "MS"^^ . "MS:4000079"^^ . "QC2 sample intensities"^^ . _:genid6074 . _:genid6074 . _:genid6074 . _:genid6074 "Observed intensities for the peptides of a QC2 sample measurement within 5 ppm and +/- 240 s RT tolerance. Different metrics of observed intensities are possible, at least one must be present. The table should contain the peptides as defined in the parent QC2 sample metric term, missing are interpreted as not detected."^^ . _:genid6074 "PSI:MS"^^ . . "An organizational header for concepts representing mostly abstract entities."^^ . "Conceptual Entity"^^ . "MS"^^ . "NCIT:C20181"^^ . "Conceptual Entity"^^ . _:genid6075 . _:genid6075 . _:genid6075 . _:genid6075 "An organizational header for concepts representing mostly abstract entities."^^ . _:genid6075 "NCI"^^ . _:genid6076 . _:genid6076 . _:genid6076 . _:genid6076 "Conceptual Entity"^^ . _:genid6076 "PT"^^ . _:genid6076 "NCI"^^ . . "A distinguishing quality or prominent aspect of a person, object, action, process, or substance."^^ . "Property or Attribute"^^ . "MS"^^ . "NCIT:C20189"^^ . "Property or Attribute"^^ . _:genid6077 . _:genid6077 . _:genid6077 . _:genid6077 "A distinguishing quality or prominent aspect of a person, object, action, process, or substance."^^ . _:genid6077 "NCI"^^ . _:genid6078 . _:genid6078 . _:genid6078 . _:genid6078 "Property or Attribute"^^ . _:genid6078 "PT"^^ . _:genid6078 "NCI"^^ . _:genid6079 . _:genid6079 . _:genid6079 . _:genid6079 "Property or Attribute"^^ . _:genid6079 "PT"^^ . _:genid6079 "NICHD"^^ . . . "Terms used to indicate units of time or other terms associated with time."^^ . "Temporal Qualifier"^^ . "MS"^^ . "NCIT:C21514"^^ . "Temporal Qualifier"^^ . _:genid6080 . _:genid6080 . _:genid6080 . _:genid6080 "Terms used to indicate units of time or other terms associated with time."^^ . _:genid6080 "NCI"^^ . _:genid6081 . _:genid6081 . _:genid6081 . _:genid6081 "Temporal Qualifier"^^ . _:genid6081 "PT"^^ . _:genid6081 "NCI"^^ . _:genid6082 . _:genid6082 . _:genid6082 . _:genid6082 "Temporal Qualifier"^^ . _:genid6082 "PT"^^ . _:genid6082 "NICHD"^^ . . . "The period of time during which something continues."^^ . "MS"^^ . "NCIT:C25330"^^ . "Duration"^^ . _:genid6083 . _:genid6083 . _:genid6083 . _:genid6083 "The period of time during which something continues."^^ . _:genid6083 "NCI"^^ . . . "A thing done."^^ . "Action"^^ . "Generic Action"^^ . "MS"^^ . "NCIT:C25404"^^ . . "Action"^^ . _:genid6084 . _:genid6084 . _:genid6084 . _:genid6084 "A thing done."^^ . _:genid6084 "NCI"^^ . _:genid6085 . _:genid6085 . _:genid6085 . _:genid6085 "Action"^^ . _:genid6085 "PT"^^ . _:genid6085 "NCI"^^ . _:genid6086 . _:genid6086 . _:genid6086 . _:genid6086 "Action"^^ . _:genid6086 "SY"^^ . _:genid6086 "caDSR"^^ . _:genid6087 . _:genid6087 . _:genid6087 . _:genid6087 "Generic Action"^^ . _:genid6087 "SY"^^ . _:genid6087 "NCI"^^ . . . "The distinguishing qualities or prominent aspect of a person, object, action, process, or substance."^^ . "Characteristic"^^ . "Characteristics"^^ . "Feature"^^ . "Features"^^ . "MS"^^ . "NCIT:C25447"^^ . "Characteristic"^^ . _:genid6088 . _:genid6088 . _:genid6088 . _:genid6088 "The distinguishing qualities or prominent aspect of a person, object, action, process, or substance."^^ . _:genid6088 "NCI"^^ . _:genid6089 . _:genid6089 . _:genid6089 . _:genid6089 "Characteristic"^^ . _:genid6089 "PT"^^ . _:genid6089 "NCI"^^ . _:genid6090 . _:genid6090 . _:genid6090 . _:genid6090 "Characteristic"^^ . _:genid6090 "PT"^^ . _:genid6090 "NICHD"^^ . _:genid6091 . _:genid6091 . _:genid6091 . _:genid6091 "Characteristic"^^ . _:genid6091 "SY"^^ . _:genid6091 "caDSR"^^ . _:genid6092 . _:genid6092 . _:genid6092 . _:genid6092 "Characteristics"^^ . _:genid6092 "SY"^^ . _:genid6092 "NCI"^^ . _:genid6093 . _:genid6093 . _:genid6093 . _:genid6093 "Feature"^^ . _:genid6093 "SY"^^ . _:genid6093 "NCI"^^ . _:genid6094 . _:genid6094 . _:genid6094 . _:genid6094 "Features"^^ . _:genid6094 "SY"^^ . _:genid6094 "caDSR"^^ . . . "A term that helps define and render a concept unique."^^ . "Modifier"^^ . "Qualifier"^^ . "MS"^^ . "NCIT:C41009"^^ . "Qualifier"^^ . _:genid6095 . _:genid6095 . _:genid6095 . _:genid6095 "A term that helps define and render a concept unique."^^ . _:genid6095 "NCI"^^ . _:genid6096 . _:genid6096 . _:genid6096 . _:genid6096 "Modifier"^^ . _:genid6096 "SY"^^ . _:genid6096 "NCI"^^ . _:genid6097 . _:genid6097 . _:genid6097 . _:genid6097 "Qualifier"^^ . _:genid6097 "PT"^^ . _:genid6097 "NCI"^^ . . "An active process; excludes processes and mechanisms which fulfill biological functions."^^ . "Activity"^^ . "General activity"^^ . "MS"^^ . "NCIT:C43431"^^ . "Activity"^^ . _:genid6098 . _:genid6098 . _:genid6098 . _:genid6098 "An active process; excludes processes and mechanisms which fulfill biological functions."^^ . _:genid6098 "NCI"^^ . _:genid6099 . _:genid6099 . _:genid6099 . _:genid6099 "Activity"^^ . _:genid6099 "PT"^^ . _:genid6099 "BRIDG 3.0.3"^^ . _:genid6100 . _:genid6100 . _:genid6100 . _:genid6100 "Activity"^^ . _:genid6100 "PT"^^ . _:genid6100 "BRIDG 5.3"^^ . _:genid6101 . _:genid6101 . _:genid6101 . _:genid6101 "Activity"^^ . _:genid6101 "PT"^^ . _:genid6101 "NCI"^^ . _:genid6102 . _:genid6102 . _:genid6102 . _:genid6102 "Activity"^^ . _:genid6102 "SY"^^ . _:genid6102 "caDSR"^^ . _:genid6103 . _:genid6103 . _:genid6103 . _:genid6103 "General activity"^^ . _:genid6103 "SY"^^ . _:genid6103 "caDSR"^^ . . . "The amount of something per unit size."^^ . "MS"^^ . "NCIT:C45781"^^ . "Density"^^ . _:genid6104 . _:genid6104 . _:genid6104 . _:genid6104 "The amount of something per unit size."^^ . _:genid6104 "NCI"^^ . . . "Span a region or interval of distance, space or time."^^ . "MS"^^ . "NCIT:C68811"^^ . "Cover"^^ . _:genid6105 . _:genid6105 . _:genid6105 . _:genid6105 "Span a region or interval of distance, space or time."^^ . _:genid6105 "NCI"^^ . . . "An observation in a data set that is numerically distant from the rest of the data."^^ . "MS"^^ . "NCIT:C79083"^^ . "Outlier"^^ . _:genid6106 . _:genid6106 . _:genid6106 . _:genid6106 "An observation in a data set that is numerically distant from the rest of the data."^^ . _:genid6106 "NCI"^^ . . _:genid6107 . _:genid6107 . _:genid6107 . _:genid6107 . "PSI Extended FASTA Format controlled vocabulary term."^^ . "MS"^^ . "PEFF:0000001"^^ . "PEFF CV term"^^ . _:genid6108 . _:genid6108 . _:genid6108 . _:genid6108 "PSI Extended FASTA Format controlled vocabulary term."^^ . _:genid6108 "PSI:PEFF"^^ . . . "CV term that may appear in a PEFF file header section."^^ . "MS"^^ . "PEFF:0000002"^^ . "PEFF file header section term"^^ . _:genid6109 . _:genid6109 . _:genid6109 . _:genid6109 "CV term that may appear in a PEFF file header section."^^ . _:genid6109 "PSI:PEFF"^^ . . . "CV term that may appear in a description line of a PEFF file individual sequence entry."^^ . "MS"^^ . "PEFF:0000003"^^ . "PEFF file sequence entry term"^^ . _:genid6110 . _:genid6110 . _:genid6110 . _:genid6110 "CV term that may appear in a description line of a PEFF file individual sequence entry."^^ . _:genid6110 "PSI:PEFF"^^ . . . _:genid6111 . _:genid6111 . _:genid6111 . _:genid6111 . "PEFF keyword for the sequence database name."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0000008"^^ . "DbName"^^ . _:genid6112 . _:genid6112 . _:genid6112 . _:genid6112 "PEFF keyword for the sequence database name."^^ . _:genid6112 "PSI:PEFF"^^ . _:genid6113 . _:genid6113 . _:genid6113 . _:genid6113 "value-type:xsd:string"^^ . _:genid6113 "The allowed value-type for this CV term."^^ . . . _:genid6114 . _:genid6114 . _:genid6114 . _:genid6114 . "PEFF keyword for the sequence database prefix."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0000009"^^ . "Prefix"^^ . _:genid6115 . _:genid6115 . _:genid6115 . _:genid6115 "PEFF keyword for the sequence database prefix."^^ . _:genid6115 "PSI:PEFF"^^ . _:genid6116 . _:genid6116 . _:genid6116 . _:genid6116 "value-type:xsd:string"^^ . _:genid6116 "The allowed value-type for this CV term."^^ . . . _:genid6117 . _:genid6117 . _:genid6117 . _:genid6117 . "PEFF keyword for the sequence database short description."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0000010"^^ . "DbDescription"^^ . _:genid6118 . _:genid6118 . _:genid6118 . _:genid6118 "PEFF keyword for the sequence database short description."^^ . _:genid6118 "PSI:PEFF"^^ . _:genid6119 . _:genid6119 . _:genid6119 . _:genid6119 "value-type:xsd:string"^^ . _:genid6119 "The allowed value-type for this CV term."^^ . . . _:genid6120 . _:genid6120 . _:genid6120 . _:genid6120 . "PEFF keyword for the specifying whether the sequence database is a decoy database."^^ . "value-type:xsd:boolean"^^ . "MS"^^ . "PEFF:0000011"^^ . "Decoy"^^ . _:genid6121 . _:genid6121 . _:genid6121 . _:genid6121 "PEFF keyword for the specifying whether the sequence database is a decoy database."^^ . _:genid6121 "PSI:PEFF"^^ . _:genid6122 . _:genid6122 . _:genid6122 . _:genid6122 "value-type:xsd:boolean"^^ . _:genid6122 "The allowed value-type for this CV term."^^ . . . _:genid6123 . _:genid6123 . _:genid6123 . _:genid6123 . "PEFF keyword for the source of the database file."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0000012"^^ . "DbSource"^^ . _:genid6124 . _:genid6124 . _:genid6124 . _:genid6124 "PEFF keyword for the source of the database file."^^ . _:genid6124 "PSI:PEFF"^^ . _:genid6125 . _:genid6125 . _:genid6125 . _:genid6125 "value-type:xsd:string"^^ . _:genid6125 "The allowed value-type for this CV term."^^ . . . _:genid6126 . _:genid6126 . _:genid6126 . _:genid6126 . "PEFF keyword for the database version (release date) according to database provider."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0000013"^^ . "DbVersion"^^ . _:genid6127 . _:genid6127 . _:genid6127 . _:genid6127 "PEFF keyword for the database version (release date) according to database provider."^^ . _:genid6127 "PSI:PEFF"^^ . _:genid6128 . _:genid6128 . _:genid6128 . _:genid6128 "value-type:xsd:string"^^ . _:genid6128 "The allowed value-type for this CV term."^^ . . . "OBSOLETE PEFF keyword for the database date (release or file date of the source) according to database provider."^^ . "MS"^^ . "PEFF:0000014"^^ . "This term was obsoleted."^^ . "DbDate"^^ . "true"^^ . _:genid6129 . _:genid6129 . _:genid6129 . _:genid6129 "OBSOLETE PEFF keyword for the database date (release or file date of the source) according to database provider."^^ . _:genid6129 "PSI:PEFF"^^ . . . _:genid6130 . _:genid6130 . _:genid6130 . _:genid6130 . "PEFF keyword for the sumber of sequence entries in the database."^^ . "value-type:xsd:integer"^^ . "MS"^^ . "PEFF:0000015"^^ . "NumberOfEntries"^^ . _:genid6131 . _:genid6131 . _:genid6131 . _:genid6131 "PEFF keyword for the sumber of sequence entries in the database."^^ . _:genid6131 "PSI:PEFF"^^ . _:genid6132 . _:genid6132 . _:genid6132 . _:genid6132 "value-type:xsd:integer"^^ . _:genid6132 "The allowed value-type for this CV term."^^ . . . _:genid6133 . _:genid6133 . _:genid6133 . _:genid6133 . "PEFF keyword for the description of the conversion from original format to this current one."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0000016"^^ . "Conversion"^^ . _:genid6134 . _:genid6134 . _:genid6134 . _:genid6134 "PEFF keyword for the description of the conversion from original format to this current one."^^ . _:genid6134 "PSI:PEFF"^^ . _:genid6135 . _:genid6135 . _:genid6135 . _:genid6135 "value-type:xsd:string"^^ . _:genid6135 "The allowed value-type for this CV term."^^ . . . _:genid6136 . _:genid6136 . _:genid6136 . _:genid6136 . _:genid6137 . _:genid6137 . _:genid6137 . _:genid6137 . "PEFF keyword for the molecular type of the sequences."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0000017"^^ . "SequenceType"^^ . _:genid6138 . _:genid6138 . _:genid6138 . _:genid6138 "PEFF keyword for the molecular type of the sequences."^^ . _:genid6138 "PSI:PEFF"^^ . _:genid6139 . _:genid6139 . _:genid6139 . _:genid6139 "value-type:xsd:string"^^ . _:genid6139 "The allowed value-type for this CV term."^^ . . . _:genid6140 . _:genid6140 . _:genid6140 . _:genid6140 . "PEFF keyword for database specific keywords not included in the current controlled vocabulary."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0000018"^^ . "SpecificKey"^^ . _:genid6141 . _:genid6141 . _:genid6141 . _:genid6141 "PEFF keyword for database specific keywords not included in the current controlled vocabulary."^^ . _:genid6141 "PSI:PEFF"^^ . _:genid6142 . _:genid6142 . _:genid6142 . _:genid6142 "value-type:xsd:string"^^ . _:genid6142 "The allowed value-type for this CV term."^^ . . . _:genid6143 . _:genid6143 . _:genid6143 . _:genid6143 . "PEFF keyword for the specific values for a custom key."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0000019"^^ . "SpecificValue"^^ . _:genid6144 . _:genid6144 . _:genid6144 . _:genid6144 "PEFF keyword for the specific values for a custom key."^^ . _:genid6144 "PSI:PEFF"^^ . _:genid6145 . _:genid6145 . _:genid6145 . _:genid6145 "value-type:xsd:string"^^ . _:genid6145 "The allowed value-type for this CV term."^^ . . . _:genid6146 . _:genid6146 . _:genid6146 . _:genid6146 . "PEFF keyword for the short description of the PEFF file."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0000020"^^ . "DatabaseDescription"^^ . _:genid6147 . _:genid6147 . _:genid6147 . _:genid6147 "PEFF keyword for the short description of the PEFF file."^^ . _:genid6147 "PSI:PEFF"^^ . _:genid6148 . _:genid6148 . _:genid6148 . _:genid6148 "value-type:xsd:string"^^ . _:genid6148 "The allowed value-type for this CV term."^^ . . . _:genid6149 . _:genid6149 . _:genid6149 . _:genid6149 . "PEFF keyword for a general comment."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0000021"^^ . "GeneralComment"^^ . _:genid6150 . _:genid6150 . _:genid6150 . _:genid6150 "PEFF keyword for a general comment."^^ . _:genid6150 "PSI:PEFF"^^ . _:genid6151 . _:genid6151 . _:genid6151 . _:genid6151 "value-type:xsd:string"^^ . _:genid6151 "The allowed value-type for this CV term."^^ . . . _:genid6152 . _:genid6152 . _:genid6152 . _:genid6152 . "PEFF keyword that when set to 'true' indicates that the database contains complete proteoforms."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0000022"^^ . "ProteoformDb"^^ . _:genid6153 . _:genid6153 . _:genid6153 . _:genid6153 "PEFF keyword that when set to 'true' indicates that the database contains complete proteoforms."^^ . _:genid6153 "PSI:PEFF"^^ . _:genid6154 . _:genid6154 . _:genid6154 . _:genid6154 "value-type:xsd:string"^^ . _:genid6154 "The allowed value-type for this CV term."^^ . . . _:genid6155 . _:genid6155 . _:genid6155 . _:genid6155 . "PEFF keyword for the short tag (abbreviation) and longer definition used to annotate a sequence annotation (such as variant or modification) in the OptionalTag location."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0000023"^^ . "OptionalTagDef"^^ . _:genid6156 . _:genid6156 . _:genid6156 . _:genid6156 "PEFF keyword for the short tag (abbreviation) and longer definition used to annotate a sequence annotation (such as variant or modification) in the OptionalTag location."^^ . _:genid6156 "PSI:PEFF"^^ . _:genid6157 . _:genid6157 . _:genid6157 . _:genid6157 "value-type:xsd:string"^^ . _:genid6157 "The allowed value-type for this CV term."^^ . . . _:genid6158 . _:genid6158 . _:genid6158 . _:genid6158 . "PEFF keyword that when set to 'true' indicates that entries in the database have identifiers for each annotation."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0000024"^^ . "HasAnnotationIdentifiers"^^ . _:genid6159 . _:genid6159 . _:genid6159 . _:genid6159 "PEFF keyword that when set to 'true' indicates that entries in the database have identifiers for each annotation."^^ . _:genid6159 "PSI:PEFF"^^ . _:genid6160 . _:genid6160 . _:genid6160 . _:genid6160 "value-type:xsd:string"^^ . _:genid6160 "The allowed value-type for this CV term."^^ . . . _:genid6161 . _:genid6161 . _:genid6161 . _:genid6161 . "OBSOLETE Sequence database unique identifier."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001001"^^ . "This term was made obsolete because decided in Heidelberg 2018-04 that this is redundant."^^ . "DbUniqueId"^^ . "true"^^ . _:genid6162 . _:genid6162 . _:genid6162 . _:genid6162 "OBSOLETE Sequence database unique identifier."^^ . _:genid6162 "PSI:PEFF"^^ . _:genid6163 . _:genid6163 . _:genid6163 . _:genid6163 "value-type:xsd:string"^^ . _:genid6163 "The allowed value-type for this CV term."^^ . . . _:genid6164 . _:genid6164 . _:genid6164 . _:genid6164 . "PEFF keyword for the protein full name."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001002"^^ . "PName"^^ . _:genid6165 . _:genid6165 . _:genid6165 . _:genid6165 "PEFF keyword for the protein full name."^^ . _:genid6165 "PSI:PEFF"^^ . _:genid6166 . _:genid6166 . _:genid6166 . _:genid6166 "value-type:xsd:string"^^ . _:genid6166 "The allowed value-type for this CV term."^^ . . . _:genid6167 . _:genid6167 . _:genid6167 . _:genid6167 . "PEFF keyword for the NCBI taxonomy identifier."^^ . "value-type:xsd:int"^^ . "MS"^^ . "PEFF:0001003"^^ . "NcbiTaxId"^^ . _:genid6168 . _:genid6168 . _:genid6168 . _:genid6168 "PEFF keyword for the NCBI taxonomy identifier."^^ . _:genid6168 "PSI:PEFF"^^ . _:genid6169 . _:genid6169 . _:genid6169 . _:genid6169 "value-type:xsd:int"^^ . _:genid6169 "The allowed value-type for this CV term."^^ . . . _:genid6170 . _:genid6170 . _:genid6170 . _:genid6170 . "PEFF keyword for the taxonomy name (latin or common name)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001004"^^ . "TaxName"^^ . _:genid6171 . _:genid6171 . _:genid6171 . _:genid6171 "PEFF keyword for the taxonomy name (latin or common name)."^^ . _:genid6171 "PSI:PEFF"^^ . _:genid6172 . _:genid6172 . _:genid6172 . _:genid6172 "value-type:xsd:string"^^ . _:genid6172 "The allowed value-type for this CV term."^^ . . . _:genid6173 . _:genid6173 . _:genid6173 . _:genid6173 . "PEFF keyword for the gene name."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001005"^^ . "GName"^^ . _:genid6174 . _:genid6174 . _:genid6174 . _:genid6174 "PEFF keyword for the gene name."^^ . _:genid6174 "PSI:PEFF"^^ . _:genid6175 . _:genid6175 . _:genid6175 . _:genid6175 "value-type:xsd:string"^^ . _:genid6175 "The allowed value-type for this CV term."^^ . . . _:genid6176 . _:genid6176 . _:genid6176 . _:genid6176 . "PEFF keyword for the sequence length."^^ . "value-type:xsd:int"^^ . "MS"^^ . "PEFF:0001006"^^ . "Length"^^ . _:genid6177 . _:genid6177 . _:genid6177 . _:genid6177 "PEFF keyword for the sequence length."^^ . _:genid6177 "PSI:PEFF"^^ . _:genid6178 . _:genid6178 . _:genid6178 . _:genid6178 "value-type:xsd:int"^^ . _:genid6178 "The allowed value-type for this CV term."^^ . . . _:genid6179 . _:genid6179 . _:genid6179 . _:genid6179 . "PEFF keyword for the sequence version."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001007"^^ . "SV"^^ . _:genid6180 . _:genid6180 . _:genid6180 . _:genid6180 "PEFF keyword for the sequence version."^^ . _:genid6180 "PSI:PEFF"^^ . _:genid6181 . _:genid6181 . _:genid6181 . _:genid6181 "value-type:xsd:string"^^ . _:genid6181 "The allowed value-type for this CV term."^^ . . . _:genid6182 . _:genid6182 . _:genid6182 . _:genid6182 . "PEFF keyword for the entry version."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001008"^^ . "EV"^^ . _:genid6183 . _:genid6183 . _:genid6183 . _:genid6183 "PEFF keyword for the entry version."^^ . _:genid6183 "PSI:PEFF"^^ . _:genid6184 . _:genid6184 . _:genid6184 . _:genid6184 "value-type:xsd:string"^^ . _:genid6184 "The allowed value-type for this CV term."^^ . . . _:genid6185 . _:genid6185 . _:genid6185 . _:genid6185 . "PEFF keyword for the Protein Evidence; A UniProtKB code 1-5."^^ . "value-type:xsd:int"^^ . "MS"^^ . "PEFF:0001009"^^ . "PE"^^ . _:genid6186 . _:genid6186 . _:genid6186 . _:genid6186 "PEFF keyword for the Protein Evidence; A UniProtKB code 1-5."^^ . _:genid6186 "PSI:PEFF"^^ . _:genid6187 . _:genid6187 . _:genid6187 . _:genid6187 "value-type:xsd:int"^^ . _:genid6187 "The allowed value-type for this CV term."^^ . . . _:genid6188 . _:genid6188 . _:genid6188 . _:genid6188 . _:genid6189 . _:genid6189 . _:genid6189 . _:genid6189 . "PEFF keyword for information on how the full length original protein sequence can be processed into shorter components such as signal peptides and chains."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001010"^^ . "Processed"^^ . _:genid6190 . _:genid6190 . _:genid6190 . _:genid6190 "PEFF keyword for information on how the full length original protein sequence can be processed into shorter components such as signal peptides and chains."^^ . _:genid6190 "PSI:PEFF"^^ . _:genid6191 . _:genid6191 . _:genid6191 . _:genid6191 "value-type:xsd:string"^^ . _:genid6191 "The allowed value-type for this CV term."^^ . . . _:genid6192 . _:genid6192 . _:genid6192 . _:genid6192 . _:genid6193 . _:genid6193 . _:genid6193 . _:genid6193 . "OBSOLETE Sequence variation (substitution, insertion, deletion)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001011"^^ . "This term was made obsolete in favor of VariantSimple and VariantComplex."^^ . "Variant"^^ . "true"^^ . _:genid6194 . _:genid6194 . _:genid6194 . _:genid6194 "OBSOLETE Sequence variation (substitution, insertion, deletion)."^^ . _:genid6194 "PSI:PEFF"^^ . _:genid6195 . _:genid6195 . _:genid6195 . _:genid6195 "value-type:xsd:string"^^ . _:genid6195 "The allowed value-type for this CV term."^^ . . . _:genid6196 . _:genid6196 . _:genid6196 . _:genid6196 . _:genid6197 . _:genid6197 . _:genid6197 . _:genid6197 . "PEFF keyword for the modified residue with PSI-MOD identifier."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001012"^^ . "ModResPsi"^^ . _:genid6198 . _:genid6198 . _:genid6198 . _:genid6198 "PEFF keyword for the modified residue with PSI-MOD identifier."^^ . _:genid6198 "PSI:PEFF"^^ . _:genid6199 . _:genid6199 . _:genid6199 . _:genid6199 "value-type:xsd:string"^^ . _:genid6199 "The allowed value-type for this CV term."^^ . . . _:genid6200 . _:genid6200 . _:genid6200 . _:genid6200 . _:genid6201 . _:genid6201 . _:genid6201 . _:genid6201 . "PEFF keyword for the modified residue without aPSI-MOD or UniMod identifier."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001013"^^ . "ModRes"^^ . _:genid6202 . _:genid6202 . _:genid6202 . _:genid6202 "PEFF keyword for the modified residue without aPSI-MOD or UniMod identifier."^^ . _:genid6202 "PSI:PEFF"^^ . _:genid6203 . _:genid6203 . _:genid6203 . _:genid6203 "value-type:xsd:string"^^ . _:genid6203 "The allowed value-type for this CV term."^^ . . . _:genid6204 . _:genid6204 . _:genid6204 . _:genid6204 . "PEFF keyword for the Alternative Accession Code."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001014"^^ . "AltAC"^^ . _:genid6205 . _:genid6205 . _:genid6205 . _:genid6205 "PEFF keyword for the Alternative Accession Code."^^ . _:genid6205 "PSI:PEFF"^^ . _:genid6206 . _:genid6206 . _:genid6206 . _:genid6206 "value-type:xsd:string"^^ . _:genid6206 "The allowed value-type for this CV term."^^ . . . _:genid6207 . _:genid6207 . _:genid6207 . _:genid6207 . _:genid6208 . _:genid6208 . _:genid6208 . _:genid6208 . "PEFF keyword for the sequence status. Complete or Fragment."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001015"^^ . "SeqStatus"^^ . _:genid6209 . _:genid6209 . _:genid6209 . _:genid6209 "PEFF keyword for the sequence status. Complete or Fragment."^^ . _:genid6209 "PSI:PEFF"^^ . _:genid6210 . _:genid6210 . _:genid6210 . _:genid6210 "value-type:xsd:string"^^ . _:genid6210 "The allowed value-type for this CV term."^^ . . . _:genid6211 . _:genid6211 . _:genid6211 . _:genid6211 . "PEFF keyword for the entry associated comment."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001016"^^ . "CC"^^ . _:genid6212 . _:genid6212 . _:genid6212 . _:genid6212 "PEFF keyword for the entry associated comment."^^ . _:genid6212 "PSI:PEFF"^^ . _:genid6213 . _:genid6213 . _:genid6213 . _:genid6213 "value-type:xsd:string"^^ . _:genid6213 "The allowed value-type for this CV term."^^ . . . _:genid6214 . _:genid6214 . _:genid6214 . _:genid6214 . "PEFF keyword for the entry associated keyword(s)."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001017"^^ . "KW"^^ . _:genid6215 . _:genid6215 . _:genid6215 . _:genid6215 "PEFF keyword for the entry associated keyword(s)."^^ . _:genid6215 "PSI:PEFF"^^ . _:genid6216 . _:genid6216 . _:genid6216 . _:genid6216 "value-type:xsd:string"^^ . _:genid6216 "The allowed value-type for this CV term."^^ . . . _:genid6217 . _:genid6217 . _:genid6217 . _:genid6217 . "PEFF keyword for the Gene Ontology code."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001018"^^ . "GO"^^ . _:genid6218 . _:genid6218 . _:genid6218 . _:genid6218 "PEFF keyword for the Gene Ontology code."^^ . _:genid6218 "PSI:PEFF"^^ . _:genid6219 . _:genid6219 . _:genid6219 . _:genid6219 "value-type:xsd:string"^^ . _:genid6219 "The allowed value-type for this CV term."^^ . . . _:genid6220 . _:genid6220 . _:genid6220 . _:genid6220 . "PEFF keyword for the cross-reference to an external resource."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001019"^^ . "XRef"^^ . _:genid6221 . _:genid6221 . _:genid6221 . _:genid6221 "PEFF keyword for the cross-reference to an external resource."^^ . _:genid6221 "PSI:PEFF"^^ . _:genid6222 . _:genid6222 . _:genid6222 . _:genid6222 "value-type:xsd:string"^^ . _:genid6222 "The allowed value-type for this CV term."^^ . . . _:genid6223 . _:genid6223 . _:genid6223 . _:genid6223 . _:genid6224 . _:genid6224 . _:genid6224 . _:genid6224 . "Portion of a newly synthesized protein that contributes to a final structure after other components such as signal peptides are removed."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001020"^^ . "mature protein"^^ . _:genid6225 . _:genid6225 . _:genid6225 . _:genid6225 "Portion of a newly synthesized protein that contributes to a final structure after other components such as signal peptides are removed."^^ . _:genid6225 "PSI:PEFF"^^ . _:genid6226 . _:genid6226 . _:genid6226 . _:genid6226 "value-type:xsd:string"^^ . _:genid6226 "The allowed value-type for this CV term."^^ . . . _:genid6227 . _:genid6227 . _:genid6227 . _:genid6227 . _:genid6228 . _:genid6228 . _:genid6228 . _:genid6228 . "Short peptide present at the N-terminus of a newly synthesized protein that is cleaved off and is not part of the final mature protein."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001021"^^ . "signal peptide"^^ . _:genid6229 . _:genid6229 . _:genid6229 . _:genid6229 "Short peptide present at the N-terminus of a newly synthesized protein that is cleaved off and is not part of the final mature protein."^^ . _:genid6229 "PSI:PEFF"^^ . _:genid6230 . _:genid6230 . _:genid6230 . _:genid6230 "value-type:xsd:string"^^ . _:genid6230 "The allowed value-type for this CV term."^^ . . . _:genid6231 . _:genid6231 . _:genid6231 . _:genid6231 . _:genid6232 . _:genid6232 . _:genid6232 . _:genid6232 . "Short peptide present at the N-terminus of a newly synthesized protein that helps the protein through the membrane of its destination organelle."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001022"^^ . "transit peptide"^^ . _:genid6233 . _:genid6233 . _:genid6233 . _:genid6233 "Short peptide present at the N-terminus of a newly synthesized protein that helps the protein through the membrane of its destination organelle."^^ . _:genid6233 "PSI:PEFF"^^ . _:genid6234 . _:genid6234 . _:genid6234 . _:genid6234 "value-type:xsd:string"^^ . _:genid6234 "The allowed value-type for this CV term."^^ . . . _:genid6235 . _:genid6235 . _:genid6235 . _:genid6235 . _:genid6236 . _:genid6236 . _:genid6236 . _:genid6236 . "PEFF keyword for the sequence conflict; a UniProtKB term."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001023"^^ . "Conflict"^^ . _:genid6237 . _:genid6237 . _:genid6237 . _:genid6237 "PEFF keyword for the sequence conflict; a UniProtKB term."^^ . _:genid6237 "PSI:PEFF"^^ . _:genid6238 . _:genid6238 . _:genid6238 . _:genid6238 "value-type:xsd:string"^^ . _:genid6238 "The allowed value-type for this CV term."^^ . . . _:genid6239 . _:genid6239 . _:genid6239 . _:genid6239 . "PEFF keyword for the Sequence checksum in crc64."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001024"^^ . "Crc64"^^ . _:genid6240 . _:genid6240 . _:genid6240 . _:genid6240 "PEFF keyword for the Sequence checksum in crc64."^^ . _:genid6240 "PSI:PEFF"^^ . _:genid6241 . _:genid6241 . _:genid6241 . _:genid6241 "value-type:xsd:string"^^ . _:genid6241 "The allowed value-type for this CV term."^^ . . . _:genid6242 . _:genid6242 . _:genid6242 . _:genid6242 . "PEFF keyword for the sequence range of a domain."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001025"^^ . "Domain"^^ . _:genid6243 . _:genid6243 . _:genid6243 . _:genid6243 "PEFF keyword for the sequence range of a domain."^^ . _:genid6243 "PSI:PEFF"^^ . _:genid6244 . _:genid6244 . _:genid6244 . _:genid6244 "value-type:xsd:string"^^ . _:genid6244 "The allowed value-type for this CV term."^^ . . . _:genid6245 . _:genid6245 . _:genid6245 . _:genid6245 . "PEFF keyword for the UniProtKB specific Protein identifier ID; a UniProtKB term."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001026"^^ . "ID"^^ . _:genid6246 . _:genid6246 . _:genid6246 . _:genid6246 "PEFF keyword for the UniProtKB specific Protein identifier ID; a UniProtKB term."^^ . _:genid6246 "PSI:PEFF"^^ . _:genid6247 . _:genid6247 . _:genid6247 . _:genid6247 "value-type:xsd:string"^^ . _:genid6247 "The allowed value-type for this CV term."^^ . . . _:genid6248 . _:genid6248 . _:genid6248 . _:genid6248 . _:genid6249 . _:genid6249 . _:genid6249 . _:genid6249 . "PEFF keyword for the modified residue with UniMod identifier."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001027"^^ . "ModResUnimod"^^ . _:genid6250 . _:genid6250 . _:genid6250 . _:genid6250 "PEFF keyword for the modified residue with UniMod identifier."^^ . _:genid6250 "PSI:PEFF"^^ . _:genid6251 . _:genid6251 . _:genid6251 . _:genid6251 "value-type:xsd:string"^^ . _:genid6251 "The allowed value-type for this CV term."^^ . . . _:genid6252 . _:genid6252 . _:genid6252 . _:genid6252 . _:genid6253 . _:genid6253 . _:genid6253 . _:genid6253 . "PEFF keyword for the simple sequence variation of a single amino acid change. A change to a stop codon is permitted with a * symbol. More complex variations must be encoded with the VariantComplex term."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001028"^^ . "VariantSimple"^^ . _:genid6254 . _:genid6254 . _:genid6254 . _:genid6254 "PEFF keyword for the simple sequence variation of a single amino acid change. A change to a stop codon is permitted with a * symbol. More complex variations must be encoded with the VariantComplex term."^^ . _:genid6254 "PSI:PEFF"^^ . _:genid6255 . _:genid6255 . _:genid6255 . _:genid6255 "value-type:xsd:string"^^ . _:genid6255 "The allowed value-type for this CV term."^^ . . . _:genid6256 . _:genid6256 . _:genid6256 . _:genid6256 . _:genid6257 . _:genid6257 . _:genid6257 . _:genid6257 . "PEFF keyword for a sequence variation that is more complex than a single amino acid change or change to a stop codon."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001029"^^ . "VariantComplex"^^ . _:genid6258 . _:genid6258 . _:genid6258 . _:genid6258 "PEFF keyword for a sequence variation that is more complex than a single amino acid change or change to a stop codon."^^ . _:genid6258 "PSI:PEFF"^^ . _:genid6259 . _:genid6259 . _:genid6259 . _:genid6259 "value-type:xsd:string"^^ . _:genid6259 "The allowed value-type for this CV term."^^ . . . _:genid6260 . _:genid6260 . _:genid6260 . _:genid6260 . "PEFF keyword for the proteoforms of this protein, constructed as a set of annotation identifiers."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001030"^^ . "Proteoform"^^ . _:genid6261 . _:genid6261 . _:genid6261 . _:genid6261 "PEFF keyword for the proteoforms of this protein, constructed as a set of annotation identifiers."^^ . _:genid6261 "PSI:PEFF"^^ . _:genid6262 . _:genid6262 . _:genid6262 . _:genid6262 "value-type:xsd:string"^^ . _:genid6262 "The allowed value-type for this CV term."^^ . . . _:genid6263 . _:genid6263 . _:genid6263 . _:genid6263 . "PEFF keyword for the disulfide bonds in this protein, constructed as a sets of annotation identifiers of two half-cystine modifications."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001031"^^ . "DisulfideBond"^^ . _:genid6264 . _:genid6264 . _:genid6264 . _:genid6264 "PEFF keyword for the disulfide bonds in this protein, constructed as a sets of annotation identifiers of two half-cystine modifications."^^ . _:genid6264 "PSI:PEFF"^^ . _:genid6265 . _:genid6265 . _:genid6265 . _:genid6265 "value-type:xsd:string"^^ . _:genid6265 "The allowed value-type for this CV term."^^ . . . "PEFF keyword describing the type of processing event being described."^^ . "MS"^^ . "PEFF:0001032"^^ . "PEFF molecule processing keyword"^^ . _:genid6266 . _:genid6266 . _:genid6266 . _:genid6266 "PEFF keyword describing the type of processing event being described."^^ . _:genid6266 "PSI:PEFF"^^ . . . _:genid6267 . _:genid6267 . _:genid6267 . _:genid6267 . "PEFF keyword for the individual protein entry comment. It is discouraged to put parsable information here. This is only for free-text commentary."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001033"^^ . "Comment"^^ . _:genid6268 . _:genid6268 . _:genid6268 . _:genid6268 "PEFF keyword for the individual protein entry comment. It is discouraged to put parsable information here. This is only for free-text commentary."^^ . _:genid6268 "PSI:PEFF"^^ . _:genid6269 . _:genid6269 . _:genid6269 . _:genid6269 "value-type:xsd:string"^^ . _:genid6269 "The allowed value-type for this CV term."^^ . . . _:genid6270 . _:genid6270 . _:genid6270 . _:genid6270 . _:genid6271 . _:genid6271 . _:genid6271 . _:genid6271 . "Short peptide that is cleaved off a newly synthesized protein and generally immediately degraded in the process of protein maturation, and is not a signal peptide or transit peptide."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001034"^^ . "propeptide"^^ . _:genid6272 . _:genid6272 . _:genid6272 . _:genid6272 "Short peptide that is cleaved off a newly synthesized protein and generally immediately degraded in the process of protein maturation, and is not a signal peptide or transit peptide."^^ . _:genid6272 "PSI:PEFF"^^ . _:genid6273 . _:genid6273 . _:genid6273 . _:genid6273 "value-type:xsd:string"^^ . _:genid6273 "The allowed value-type for this CV term."^^ . . . _:genid6274 . _:genid6274 . _:genid6274 . _:genid6274 . _:genid6275 . _:genid6275 . _:genid6275 . _:genid6275 . "N-terminal methionine residue of a protein that can be co-translationally cleaved."^^ . "value-type:xsd:string"^^ . "MS"^^ . "PEFF:0001035"^^ . "initiator methionine"^^ . _:genid6276 . _:genid6276 . _:genid6276 . _:genid6276 "N-terminal methionine residue of a protein that can be co-translationally cleaved."^^ . _:genid6276 "PSI:PEFF"^^ . _:genid6277 . _:genid6277 . _:genid6277 . _:genid6277 "value-type:xsd:string"^^ . _:genid6277 "The allowed value-type for this CV term."^^ . . . "([0-9]+|[A-Z*](|.+)?)."^^ . "MS"^^ . "PEFF:1002001"^^ . "regular expression for a value in a key-value pair of a PEFF description line describing one sequence position followed by one PEFF term name and one optional comment"^^ . _:genid6278 . _:genid6278 . _:genid6278 . _:genid6278 "([0-9]+|[A-Z*](|.+)?)."^^ . _:genid6278 "PSI:PEFF"^^ . . . "(AA|NA|DNA|cDNA|RNA|RNAi|tRNA|rRNA|siRNA|mDNA|mRNA|snoRNA|ncRNA|EST|[a-z0-9A-Z]+)."^^ . "MS"^^ . "PEFF:1002002"^^ . "regular expression for PEFF molecular sequence type"^^ . _:genid6279 . _:genid6279 . _:genid6279 . _:genid6279 "(AA|NA|DNA|cDNA|RNA|RNAi|tRNA|rRNA|siRNA|mDNA|mRNA|snoRNA|ncRNA|EST|[a-z0-9A-Z]+)."^^ . _:genid6279 "PSI:PEFF"^^ . . . "(Complete|Fragment|[a-z0-9A-Z]+)."^^ . "MS"^^ . "PEFF:1002003"^^ . "regular expression for PEFF sequence status"^^ . _:genid6280 . _:genid6280 . _:genid6280 . _:genid6280 "(Complete|Fragment|[a-z0-9A-Z]+)."^^ . _:genid6280 "PSI:PEFF"^^ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .